Multiple sequence alignment - TraesCS3A01G301200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G301200 chr3A 100.000 5402 0 0 1 5402 535008295 535002894 0.000000e+00 9976.0
1 TraesCS3A01G301200 chr3A 81.549 439 29 24 4288 4725 146887295 146886908 1.130000e-81 315.0
2 TraesCS3A01G301200 chr3A 92.982 114 6 2 2802 2914 582360279 582360391 1.200000e-36 165.0
3 TraesCS3A01G301200 chr3D 95.660 2097 45 16 2908 4999 415535858 415537913 0.000000e+00 3326.0
4 TraesCS3A01G301200 chr3D 89.971 2393 120 51 103 2464 415533149 415535452 0.000000e+00 2979.0
5 TraesCS3A01G301200 chr3D 89.941 338 13 12 2474 2802 415535531 415535856 3.010000e-112 416.0
6 TraesCS3A01G301200 chr3D 88.255 298 28 2 5103 5400 415538076 415538366 3.100000e-92 350.0
7 TraesCS3A01G301200 chr3D 96.078 102 4 0 1 102 23679801 23679902 3.350000e-37 167.0
8 TraesCS3A01G301200 chr3D 90.323 124 10 2 2788 2910 511322132 511322010 1.560000e-35 161.0
9 TraesCS3A01G301200 chr3D 90.090 111 9 2 2 110 581865667 581865557 5.640000e-30 143.0
10 TraesCS3A01G301200 chr3B 94.433 1940 55 21 2906 4831 541516320 541518220 0.000000e+00 2935.0
11 TraesCS3A01G301200 chr3B 89.685 1493 61 46 336 1795 541513844 541515276 0.000000e+00 1818.0
12 TraesCS3A01G301200 chr3B 83.621 1044 60 51 1792 2803 541515357 541516321 0.000000e+00 878.0
13 TraesCS3A01G301200 chr3B 86.190 601 43 16 4839 5400 541518389 541518988 9.940000e-172 614.0
14 TraesCS3A01G301200 chr3B 82.727 440 23 20 4288 4725 518934269 518933881 5.180000e-90 342.0
15 TraesCS3A01G301200 chr3B 95.135 185 8 1 103 287 541513663 541513846 1.900000e-74 291.0
16 TraesCS3A01G301200 chr3B 85.446 213 11 7 4515 4725 515160153 515160347 2.550000e-48 204.0
17 TraesCS3A01G301200 chr2A 80.029 1382 233 39 3014 4376 144262345 144263702 0.000000e+00 983.0
18 TraesCS3A01G301200 chr2A 93.043 115 7 1 2802 2915 602770455 602770569 3.350000e-37 167.0
19 TraesCS3A01G301200 chr2A 76.744 301 53 12 4048 4341 14900088 14899798 9.370000e-33 152.0
20 TraesCS3A01G301200 chr2D 79.825 1368 235 36 3027 4376 136166561 136167905 0.000000e+00 959.0
21 TraesCS3A01G301200 chrUn 78.603 1131 206 30 3259 4375 69740082 69738974 0.000000e+00 715.0
22 TraesCS3A01G301200 chrUn 85.915 213 10 7 4515 4725 4345581 4345387 5.480000e-50 209.0
23 TraesCS3A01G301200 chrUn 85.915 213 10 7 4515 4725 131818871 131819065 5.480000e-50 209.0
24 TraesCS3A01G301200 chrUn 85.915 213 10 7 4515 4725 378239921 378239727 5.480000e-50 209.0
25 TraesCS3A01G301200 chrUn 93.496 123 8 0 4288 4410 4347629 4347507 3.320000e-42 183.0
26 TraesCS3A01G301200 chrUn 93.496 123 8 0 4288 4410 123976789 123976667 3.320000e-42 183.0
27 TraesCS3A01G301200 chrUn 93.496 123 8 0 4288 4410 131816827 131816949 3.320000e-42 183.0
28 TraesCS3A01G301200 chrUn 78.041 296 51 11 4048 4335 18059447 18059736 2.000000e-39 174.0
29 TraesCS3A01G301200 chrUn 85.882 85 12 0 3781 3865 18057910 18057994 2.070000e-14 91.6
30 TraesCS3A01G301200 chr5A 78.040 1143 206 36 3259 4376 464195576 464196698 0.000000e+00 678.0
31 TraesCS3A01G301200 chr5A 91.870 123 7 3 2788 2907 547790003 547790125 9.310000e-38 169.0
32 TraesCS3A01G301200 chr5A 91.597 119 8 2 2791 2908 694973930 694973813 4.330000e-36 163.0
33 TraesCS3A01G301200 chr2B 76.036 1352 261 49 3014 4341 134702952 134704264 1.270000e-180 643.0
34 TraesCS3A01G301200 chr5D 79.150 729 127 22 3259 3985 362898011 362897306 1.050000e-131 481.0
35 TraesCS3A01G301200 chr1A 83.371 439 21 19 4288 4725 137798661 137798274 5.140000e-95 359.0
36 TraesCS3A01G301200 chr1A 89.637 193 19 1 3968 4160 431033578 431033387 1.500000e-60 244.0
37 TraesCS3A01G301200 chr1B 82.500 440 31 23 4288 4725 556351092 556350697 1.440000e-90 344.0
38 TraesCS3A01G301200 chr6A 92.228 193 14 1 3968 4160 53511608 53511417 6.890000e-69 272.0
39 TraesCS3A01G301200 chr1D 90.374 187 18 0 3974 4160 417918736 417918922 4.180000e-61 246.0
40 TraesCS3A01G301200 chr4B 81.268 347 22 17 4288 4633 183821313 183821617 1.940000e-59 241.0
41 TraesCS3A01G301200 chr4A 96.296 108 3 1 1 108 598681501 598681395 5.560000e-40 176.0
42 TraesCS3A01G301200 chr4A 90.476 126 11 1 2798 2922 90353375 90353250 1.200000e-36 165.0
43 TraesCS3A01G301200 chr4A 90.323 124 10 2 2785 2907 557549777 557549899 1.560000e-35 161.0
44 TraesCS3A01G301200 chr5B 92.437 119 7 2 2790 2907 278886869 278886986 9.310000e-38 169.0
45 TraesCS3A01G301200 chr7A 91.667 120 8 2 2791 2908 670536296 670536415 1.200000e-36 165.0
46 TraesCS3A01G301200 chr7A 95.506 89 4 0 1 89 617918871 617918959 5.640000e-30 143.0
47 TraesCS3A01G301200 chr7A 87.302 126 7 3 4480 4605 500548668 500548552 9.440000e-28 135.0
48 TraesCS3A01G301200 chr6D 98.864 88 0 1 1 88 108461130 108461216 7.240000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G301200 chr3A 535002894 535008295 5401 True 9976.00 9976 100.00000 1 5402 1 chr3A.!!$R2 5401
1 TraesCS3A01G301200 chr3D 415533149 415538366 5217 False 1767.75 3326 90.95675 103 5400 4 chr3D.!!$F2 5297
2 TraesCS3A01G301200 chr3B 541513663 541518988 5325 False 1307.20 2935 89.81280 103 5400 5 chr3B.!!$F2 5297
3 TraesCS3A01G301200 chr2A 144262345 144263702 1357 False 983.00 983 80.02900 3014 4376 1 chr2A.!!$F1 1362
4 TraesCS3A01G301200 chr2D 136166561 136167905 1344 False 959.00 959 79.82500 3027 4376 1 chr2D.!!$F1 1349
5 TraesCS3A01G301200 chrUn 69738974 69740082 1108 True 715.00 715 78.60300 3259 4375 1 chrUn.!!$R1 1116
6 TraesCS3A01G301200 chr5A 464195576 464196698 1122 False 678.00 678 78.04000 3259 4376 1 chr5A.!!$F1 1117
7 TraesCS3A01G301200 chr2B 134702952 134704264 1312 False 643.00 643 76.03600 3014 4341 1 chr2B.!!$F1 1327
8 TraesCS3A01G301200 chr5D 362897306 362898011 705 True 481.00 481 79.15000 3259 3985 1 chr5D.!!$R1 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.250814 AACGCCCGGTATCCAAACAA 60.251 50.0 0.00 0.00 0.00 2.83 F
101 102 0.330267 CCGGTATCCAAACAACCCCT 59.670 55.0 0.00 0.00 0.00 4.79 F
1356 1395 0.398318 AGTTCTTGACCAGGCACCTC 59.602 55.0 0.00 0.00 0.00 3.85 F
1889 2035 0.038310 GGCTGGGGTTCAGTTAAGCT 59.962 55.0 0.00 0.00 45.08 3.74 F
2539 2786 0.165079 CGTGTGCACCGTTCCAATAC 59.835 55.0 15.69 0.92 0.00 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1403 1455 0.108424 GAGTAGTCAGTGCTGGCTGG 60.108 60.0 15.71 0.00 46.28 4.85 R
1404 1456 0.108424 GGAGTAGTCAGTGCTGGCTG 60.108 60.0 15.71 0.00 46.28 4.85 R
2467 2642 0.039708 TGCGCGCATATCTCTCTCTG 60.040 55.0 33.09 0.00 0.00 3.35 R
2955 3215 0.106318 GCCATGCTTCCTTCCTCCAT 60.106 55.0 0.00 0.00 0.00 3.41 R
4404 4715 0.026285 CGATCGATCAAACGGTTGGC 59.974 55.0 24.40 5.12 35.29 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.788684 AAATGGTATTAAAACGGGTTTTGC 57.211 33.333 17.34 6.88 42.18 3.68
36 37 4.931661 TGGTATTAAAACGGGTTTTGCA 57.068 36.364 17.34 6.52 42.18 4.08
37 38 5.272283 TGGTATTAAAACGGGTTTTGCAA 57.728 34.783 17.34 0.00 42.18 4.08
38 39 5.667466 TGGTATTAAAACGGGTTTTGCAAA 58.333 33.333 17.34 8.05 42.18 3.68
39 40 6.110707 TGGTATTAAAACGGGTTTTGCAAAA 58.889 32.000 20.46 20.46 42.18 2.44
40 41 6.596497 TGGTATTAAAACGGGTTTTGCAAAAA 59.404 30.769 25.40 7.83 42.18 1.94
69 70 9.937175 CTGCTAAAAGCTAGTTTTGTATATTCC 57.063 33.333 5.24 0.00 42.97 3.01
70 71 8.899771 TGCTAAAAGCTAGTTTTGTATATTCCC 58.100 33.333 5.24 0.00 42.97 3.97
71 72 8.899771 GCTAAAAGCTAGTTTTGTATATTCCCA 58.100 33.333 5.24 0.00 38.85 4.37
74 75 7.823745 AAGCTAGTTTTGTATATTCCCATGG 57.176 36.000 4.14 4.14 0.00 3.66
75 76 5.770162 AGCTAGTTTTGTATATTCCCATGGC 59.230 40.000 6.09 0.00 0.00 4.40
76 77 5.770162 GCTAGTTTTGTATATTCCCATGGCT 59.230 40.000 6.09 0.00 0.00 4.75
77 78 6.940298 GCTAGTTTTGTATATTCCCATGGCTA 59.060 38.462 6.09 0.00 0.00 3.93
78 79 7.447238 GCTAGTTTTGTATATTCCCATGGCTAA 59.553 37.037 6.09 2.90 0.00 3.09
79 80 7.582667 AGTTTTGTATATTCCCATGGCTAAC 57.417 36.000 6.09 0.00 0.00 2.34
80 81 6.262273 AGTTTTGTATATTCCCATGGCTAACG 59.738 38.462 6.09 0.00 0.00 3.18
81 82 3.670625 TGTATATTCCCATGGCTAACGC 58.329 45.455 6.09 0.00 0.00 4.84
91 92 2.816718 GCTAACGCCCGGTATCCA 59.183 61.111 0.00 0.00 0.00 3.41
92 93 1.144496 GCTAACGCCCGGTATCCAA 59.856 57.895 0.00 0.00 0.00 3.53
93 94 0.462403 GCTAACGCCCGGTATCCAAA 60.462 55.000 0.00 0.00 0.00 3.28
94 95 1.292992 CTAACGCCCGGTATCCAAAC 58.707 55.000 0.00 0.00 0.00 2.93
95 96 0.612229 TAACGCCCGGTATCCAAACA 59.388 50.000 0.00 0.00 0.00 2.83
96 97 0.250814 AACGCCCGGTATCCAAACAA 60.251 50.000 0.00 0.00 0.00 2.83
97 98 0.956902 ACGCCCGGTATCCAAACAAC 60.957 55.000 0.00 0.00 0.00 3.32
98 99 1.650314 CGCCCGGTATCCAAACAACC 61.650 60.000 0.00 0.00 0.00 3.77
99 100 1.317431 GCCCGGTATCCAAACAACCC 61.317 60.000 0.00 0.00 0.00 4.11
100 101 0.681887 CCCGGTATCCAAACAACCCC 60.682 60.000 0.00 0.00 0.00 4.95
101 102 0.330267 CCGGTATCCAAACAACCCCT 59.670 55.000 0.00 0.00 0.00 4.79
139 140 3.851098 ACGGAGTCAATCTAAGAAGTGC 58.149 45.455 0.00 0.00 29.74 4.40
203 209 7.064490 CAGATTTCCTCTCTAGCAAAGAAAGAC 59.936 40.741 0.00 0.00 32.46 3.01
214 220 4.578105 AGCAAAGAAAGACAGAAAGACAGG 59.422 41.667 0.00 0.00 0.00 4.00
260 266 9.499479 GATAGATTAAGATGCTGGAAATTCTCA 57.501 33.333 0.00 0.00 0.00 3.27
265 271 9.649167 ATTAAGATGCTGGAAATTCTCAAAAAG 57.351 29.630 0.00 0.00 0.00 2.27
293 299 3.210227 TCAAGATGCTGGAAAACGTCAA 58.790 40.909 0.00 0.00 0.00 3.18
294 300 3.820467 TCAAGATGCTGGAAAACGTCAAT 59.180 39.130 0.00 0.00 0.00 2.57
295 301 5.000591 TCAAGATGCTGGAAAACGTCAATA 58.999 37.500 0.00 0.00 0.00 1.90
296 302 5.647658 TCAAGATGCTGGAAAACGTCAATAT 59.352 36.000 0.00 0.00 0.00 1.28
297 303 6.150976 TCAAGATGCTGGAAAACGTCAATATT 59.849 34.615 0.00 0.00 0.00 1.28
298 304 6.124088 AGATGCTGGAAAACGTCAATATTC 57.876 37.500 0.00 0.00 0.00 1.75
299 305 4.335082 TGCTGGAAAACGTCAATATTCG 57.665 40.909 0.00 0.00 0.00 3.34
300 306 3.098636 GCTGGAAAACGTCAATATTCGC 58.901 45.455 0.00 0.00 0.00 4.70
301 307 3.342269 CTGGAAAACGTCAATATTCGCG 58.658 45.455 0.00 0.00 0.00 5.87
302 308 2.737783 TGGAAAACGTCAATATTCGCGT 59.262 40.909 5.77 7.71 39.37 6.01
303 309 3.088552 GGAAAACGTCAATATTCGCGTG 58.911 45.455 5.77 0.00 37.64 5.34
304 310 2.798834 AAACGTCAATATTCGCGTGG 57.201 45.000 5.77 0.00 37.64 4.94
305 311 1.999048 AACGTCAATATTCGCGTGGA 58.001 45.000 5.77 0.00 37.64 4.02
306 312 1.999048 ACGTCAATATTCGCGTGGAA 58.001 45.000 5.77 0.00 39.42 3.53
307 313 2.339418 ACGTCAATATTCGCGTGGAAA 58.661 42.857 5.77 0.00 38.36 3.13
330 336 0.509929 GTAAAGACCGTCCGTTGCAC 59.490 55.000 0.00 0.00 0.00 4.57
350 356 2.546494 CCCAAATGGCTCGATCGGC 61.546 63.158 16.41 16.79 0.00 5.54
369 375 1.068588 GCCCACCCAAAGACAAGAAAC 59.931 52.381 0.00 0.00 0.00 2.78
396 402 1.181786 CTCTCCTTTCGGTCTCTGCT 58.818 55.000 0.00 0.00 0.00 4.24
430 436 2.480416 GCTCAACTCGTTCTCATCGGAT 60.480 50.000 0.00 0.00 0.00 4.18
431 437 3.367607 CTCAACTCGTTCTCATCGGATC 58.632 50.000 0.00 0.00 0.00 3.36
432 438 2.112522 CAACTCGTTCTCATCGGATCG 58.887 52.381 0.00 0.00 0.00 3.69
433 439 0.663688 ACTCGTTCTCATCGGATCGG 59.336 55.000 0.00 0.00 0.00 4.18
434 440 0.945099 CTCGTTCTCATCGGATCGGA 59.055 55.000 5.34 5.34 0.00 4.55
561 589 2.004808 GCCAGCCGGTAATCCAAAGC 62.005 60.000 1.90 0.00 33.28 3.51
573 601 1.195115 TCCAAAGCTAGCGAGACCAT 58.805 50.000 9.55 0.00 0.00 3.55
602 630 2.115291 GGAACCATCCAAGCCGAGC 61.115 63.158 0.00 0.00 45.79 5.03
612 640 3.474570 AGCCGAGCTTAGCCAGGG 61.475 66.667 15.39 9.07 33.89 4.45
632 660 2.337879 TTTGGTGTCTTCCAGCGCCT 62.338 55.000 2.29 0.00 44.68 5.52
640 668 3.573772 TTCCAGCGCCTGAGTCGTG 62.574 63.158 2.29 0.00 32.44 4.35
643 671 4.427661 AGCGCCTGAGTCGTGAGC 62.428 66.667 2.29 0.14 0.00 4.26
815 843 1.627297 GCTTCATCCCCTTCTCCGGT 61.627 60.000 0.00 0.00 0.00 5.28
840 868 2.547990 CGGCTCCCCTATATAAACCCT 58.452 52.381 0.00 0.00 0.00 4.34
1269 1308 0.611062 TGGTGACCTACGAGGACCTG 60.611 60.000 0.00 0.00 37.67 4.00
1352 1391 1.118965 TCCGAGTTCTTGACCAGGCA 61.119 55.000 0.00 0.00 0.00 4.75
1353 1392 0.951040 CCGAGTTCTTGACCAGGCAC 60.951 60.000 0.00 0.00 0.00 5.01
1354 1393 0.951040 CGAGTTCTTGACCAGGCACC 60.951 60.000 0.00 0.00 0.00 5.01
1356 1395 0.398318 AGTTCTTGACCAGGCACCTC 59.602 55.000 0.00 0.00 0.00 3.85
1359 1398 3.256960 TTGACCAGGCACCTCCCC 61.257 66.667 0.00 0.00 34.51 4.81
1367 1419 4.423209 GCACCTCCCCCTCCTCCT 62.423 72.222 0.00 0.00 0.00 3.69
1384 1436 3.273080 CTTGCCCTTTGCGTGCTCC 62.273 63.158 0.00 0.00 45.60 4.70
1416 1468 4.340246 CCAGCCAGCCAGCACTGA 62.340 66.667 0.00 0.00 40.25 3.41
1417 1469 3.054503 CAGCCAGCCAGCACTGAC 61.055 66.667 0.00 0.00 40.25 3.51
1418 1470 3.247648 AGCCAGCCAGCACTGACT 61.248 61.111 0.00 0.00 40.25 3.41
1419 1471 1.915266 AGCCAGCCAGCACTGACTA 60.915 57.895 0.00 0.00 40.25 2.59
1420 1472 1.743252 GCCAGCCAGCACTGACTAC 60.743 63.158 0.00 0.00 40.25 2.73
1421 1473 1.978473 CCAGCCAGCACTGACTACT 59.022 57.895 0.00 0.00 40.25 2.57
1422 1474 0.108424 CCAGCCAGCACTGACTACTC 60.108 60.000 0.00 0.00 40.25 2.59
1438 1490 9.041354 ACTGACTACTCCTCATTTAATTTCTCT 57.959 33.333 0.00 0.00 0.00 3.10
1465 1517 1.747355 GGTGAATGAATGAGTGGGCTG 59.253 52.381 0.00 0.00 0.00 4.85
1466 1518 1.747355 GTGAATGAATGAGTGGGCTGG 59.253 52.381 0.00 0.00 0.00 4.85
1467 1519 0.743097 GAATGAATGAGTGGGCTGGC 59.257 55.000 0.00 0.00 0.00 4.85
1468 1520 0.333993 AATGAATGAGTGGGCTGGCT 59.666 50.000 0.00 0.00 0.00 4.75
1487 1539 1.600957 CTGGCTGGCTGTTTCATATCG 59.399 52.381 2.00 0.00 0.00 2.92
1638 1690 0.950555 TCATGAACCTGTGCGTGCTC 60.951 55.000 0.00 0.00 0.00 4.26
1639 1691 0.952497 CATGAACCTGTGCGTGCTCT 60.952 55.000 0.00 0.00 0.00 4.09
1640 1692 0.671781 ATGAACCTGTGCGTGCTCTC 60.672 55.000 0.00 0.00 0.00 3.20
1641 1693 1.005630 GAACCTGTGCGTGCTCTCT 60.006 57.895 0.00 0.00 0.00 3.10
1642 1694 0.601311 GAACCTGTGCGTGCTCTCTT 60.601 55.000 0.00 0.00 0.00 2.85
1643 1695 0.601311 AACCTGTGCGTGCTCTCTTC 60.601 55.000 0.00 0.00 0.00 2.87
1738 1793 0.604073 TTGCACCGACGACTGGATTA 59.396 50.000 0.00 0.00 0.00 1.75
1739 1794 0.604073 TGCACCGACGACTGGATTAA 59.396 50.000 0.00 0.00 0.00 1.40
1740 1795 1.206132 TGCACCGACGACTGGATTAAT 59.794 47.619 0.00 0.00 0.00 1.40
1741 1796 2.427812 TGCACCGACGACTGGATTAATA 59.572 45.455 0.00 0.00 0.00 0.98
1742 1797 3.069016 TGCACCGACGACTGGATTAATAT 59.931 43.478 0.00 0.00 0.00 1.28
1748 1803 7.384115 CACCGACGACTGGATTAATATTAATGT 59.616 37.037 22.48 15.01 33.72 2.71
1762 1817 2.480224 TAATGTCCGTTCGATCGACC 57.520 50.000 19.26 10.48 0.00 4.79
1774 1829 3.131478 TCGACCGCTCGATCTGCA 61.131 61.111 0.00 0.00 44.14 4.41
1846 1987 8.908786 ATTATCACAATTACCACATCACCTAG 57.091 34.615 0.00 0.00 0.00 3.02
1847 1988 5.755409 TCACAATTACCACATCACCTAGT 57.245 39.130 0.00 0.00 0.00 2.57
1848 1989 6.860790 TCACAATTACCACATCACCTAGTA 57.139 37.500 0.00 0.00 0.00 1.82
1889 2035 0.038310 GGCTGGGGTTCAGTTAAGCT 59.962 55.000 0.00 0.00 45.08 3.74
1890 2036 1.454201 GCTGGGGTTCAGTTAAGCTC 58.546 55.000 0.00 0.00 45.08 4.09
1891 2037 1.950954 GCTGGGGTTCAGTTAAGCTCC 60.951 57.143 0.00 0.00 45.08 4.70
1892 2038 1.630878 CTGGGGTTCAGTTAAGCTCCT 59.369 52.381 0.00 0.00 35.03 3.69
1893 2039 1.351017 TGGGGTTCAGTTAAGCTCCTG 59.649 52.381 0.00 0.00 35.03 3.86
1894 2040 1.340114 GGGGTTCAGTTAAGCTCCTGG 60.340 57.143 7.82 0.00 35.83 4.45
1895 2041 1.454201 GGTTCAGTTAAGCTCCTGGC 58.546 55.000 7.82 0.00 42.19 4.85
1896 2042 1.271379 GGTTCAGTTAAGCTCCTGGCA 60.271 52.381 7.82 0.00 44.79 4.92
1897 2043 2.504367 GTTCAGTTAAGCTCCTGGCAA 58.496 47.619 7.82 0.00 44.79 4.52
1911 2057 2.103094 CCTGGCAAGCTAGCTACATACA 59.897 50.000 19.70 11.86 34.17 2.29
1914 2060 4.883083 TGGCAAGCTAGCTACATACATAC 58.117 43.478 19.70 0.00 34.17 2.39
1917 2063 5.335426 GGCAAGCTAGCTACATACATACGTA 60.335 44.000 19.70 0.00 34.17 3.57
1947 2112 6.421377 TCAATCATGAAATGGTCTGTTACG 57.579 37.500 0.00 0.00 46.73 3.18
1960 2125 5.644206 TGGTCTGTTACGCATGCTAAAAATA 59.356 36.000 17.13 2.23 0.00 1.40
1961 2126 6.149640 TGGTCTGTTACGCATGCTAAAAATAA 59.850 34.615 17.13 2.15 0.00 1.40
1962 2127 6.468000 GGTCTGTTACGCATGCTAAAAATAAC 59.532 38.462 17.13 13.54 0.00 1.89
1963 2128 6.192137 GTCTGTTACGCATGCTAAAAATAACG 59.808 38.462 17.13 10.16 0.00 3.18
1964 2129 5.325494 TGTTACGCATGCTAAAAATAACGG 58.675 37.500 17.13 0.00 0.00 4.44
1991 2156 4.440880 GAACAGAAGAGACATGATGGAGG 58.559 47.826 0.00 0.00 0.00 4.30
2019 2184 1.081242 GTCATGCGTTTGTGGCCTG 60.081 57.895 3.32 0.00 0.00 4.85
2037 2202 1.194781 TGCTTCCCTCCTGACCTCAC 61.195 60.000 0.00 0.00 0.00 3.51
2043 2208 4.715130 TCCTGACCTCACCCGGGG 62.715 72.222 27.92 12.73 0.00 5.73
2057 2222 1.749258 CGGGGCTTGGCTAGGAAAC 60.749 63.158 0.00 0.00 0.00 2.78
2087 2252 4.459089 GCCTGCTGGGTCGAGGTC 62.459 72.222 12.06 0.00 37.43 3.85
2088 2253 4.135153 CCTGCTGGGTCGAGGTCG 62.135 72.222 0.71 0.00 41.45 4.79
2089 2254 4.803426 CTGCTGGGTCGAGGTCGC 62.803 72.222 0.00 0.00 39.60 5.19
2109 2274 2.406691 GCTCGCTCGCTAACTAATCATG 59.593 50.000 0.00 0.00 0.00 3.07
2205 2380 3.049080 GCGCCAAGATTCCTCCCCT 62.049 63.158 0.00 0.00 0.00 4.79
2206 2381 1.147153 CGCCAAGATTCCTCCCCTC 59.853 63.158 0.00 0.00 0.00 4.30
2207 2382 1.534203 GCCAAGATTCCTCCCCTCC 59.466 63.158 0.00 0.00 0.00 4.30
2208 2383 2.000825 GCCAAGATTCCTCCCCTCCC 62.001 65.000 0.00 0.00 0.00 4.30
2209 2384 1.356494 CCAAGATTCCTCCCCTCCCC 61.356 65.000 0.00 0.00 0.00 4.81
2210 2385 1.006227 AAGATTCCTCCCCTCCCCC 59.994 63.158 0.00 0.00 0.00 5.40
2211 2386 1.550480 AAGATTCCTCCCCTCCCCCT 61.550 60.000 0.00 0.00 0.00 4.79
2212 2387 1.772156 GATTCCTCCCCTCCCCCTG 60.772 68.421 0.00 0.00 0.00 4.45
2213 2388 3.369161 ATTCCTCCCCTCCCCCTGG 62.369 68.421 0.00 0.00 0.00 4.45
2230 2405 3.545703 CCTGGCCTCCACTATTTGTAAG 58.454 50.000 3.32 0.00 0.00 2.34
2271 2446 4.107127 CTAGGCTAGCTTCCTTCCTAGA 57.893 50.000 15.72 0.00 41.19 2.43
2272 2447 3.406512 AGGCTAGCTTCCTTCCTAGAA 57.593 47.619 15.72 0.00 34.36 2.10
2273 2448 3.935172 AGGCTAGCTTCCTTCCTAGAAT 58.065 45.455 15.72 0.00 34.36 2.40
2274 2449 5.081315 AGGCTAGCTTCCTTCCTAGAATA 57.919 43.478 15.72 0.00 34.36 1.75
2275 2450 5.468658 AGGCTAGCTTCCTTCCTAGAATAA 58.531 41.667 15.72 0.00 34.36 1.40
2276 2451 5.305902 AGGCTAGCTTCCTTCCTAGAATAAC 59.694 44.000 15.72 0.00 34.36 1.89
2301 2476 2.223711 ACATTGTGGCGTTTCAAAGTCC 60.224 45.455 0.00 0.00 0.00 3.85
2401 2576 0.758734 TCCATGTCCCGCCAGAATAG 59.241 55.000 0.00 0.00 0.00 1.73
2413 2588 1.153289 AGAATAGGCCACTGCAGCG 60.153 57.895 15.27 3.57 40.13 5.18
2448 2623 1.528309 AGGACCCAACCAACTTGCG 60.528 57.895 0.00 0.00 0.00 4.85
2449 2624 2.335011 GACCCAACCAACTTGCGC 59.665 61.111 0.00 0.00 0.00 6.09
2465 2640 7.533900 CCAACTTGCGCATATATACATGTAAAC 59.466 37.037 12.75 0.00 0.00 2.01
2467 2642 7.572759 ACTTGCGCATATATACATGTAAACAC 58.427 34.615 12.75 0.00 0.00 3.32
2523 2770 1.001815 ACAAATCCGTTTGCTTCCGTG 60.002 47.619 1.12 0.00 46.84 4.94
2531 2778 4.539083 TGCTTCCGTGTGCACCGT 62.539 61.111 15.69 0.00 33.94 4.83
2535 2782 3.387225 TTCCGTGTGCACCGTTCCA 62.387 57.895 15.69 0.00 0.00 3.53
2536 2783 2.871216 TTCCGTGTGCACCGTTCCAA 62.871 55.000 15.69 4.83 0.00 3.53
2537 2784 2.258013 CCGTGTGCACCGTTCCAAT 61.258 57.895 15.69 0.00 0.00 3.16
2538 2785 0.951525 CCGTGTGCACCGTTCCAATA 60.952 55.000 15.69 0.00 0.00 1.90
2539 2786 0.165079 CGTGTGCACCGTTCCAATAC 59.835 55.000 15.69 0.92 0.00 1.89
2540 2787 1.231221 GTGTGCACCGTTCCAATACA 58.769 50.000 15.69 0.00 0.00 2.29
2609 2863 2.474526 GCGCACTGTGTGTATTGATCAC 60.475 50.000 21.10 0.00 35.75 3.06
2637 2891 6.921857 GGTCAAATGCTCCATTTCTTCATATG 59.078 38.462 0.00 0.00 41.40 1.78
2684 2940 2.073220 CGATCGATCGTTACGCCGG 61.073 63.158 33.95 8.07 44.74 6.13
2687 2943 3.613702 CGATCGTTACGCCGGTGC 61.614 66.667 16.69 0.00 0.00 5.01
2698 2954 3.603158 ACGCCGGTGCATATATGAATA 57.397 42.857 16.69 0.00 37.32 1.75
2699 2955 4.137116 ACGCCGGTGCATATATGAATAT 57.863 40.909 16.69 0.00 37.32 1.28
2700 2956 3.871006 ACGCCGGTGCATATATGAATATG 59.129 43.478 16.69 2.71 45.32 1.78
2781 3041 4.154556 GTGCATCAAATTCAAATTGGGGTG 59.845 41.667 0.00 0.00 0.00 4.61
2802 3062 5.993441 GGTGGTACAAAACACTTTCTAGCTA 59.007 40.000 0.00 0.00 44.16 3.32
2803 3063 6.073385 GGTGGTACAAAACACTTTCTAGCTAC 60.073 42.308 0.00 0.00 44.16 3.58
2804 3064 6.704937 GTGGTACAAAACACTTTCTAGCTACT 59.295 38.462 0.00 0.00 44.16 2.57
2805 3065 6.927381 TGGTACAAAACACTTTCTAGCTACTC 59.073 38.462 0.00 0.00 31.92 2.59
2806 3066 6.368243 GGTACAAAACACTTTCTAGCTACTCC 59.632 42.308 0.00 0.00 0.00 3.85
2807 3067 5.306394 ACAAAACACTTTCTAGCTACTCCC 58.694 41.667 0.00 0.00 0.00 4.30
2808 3068 5.071923 ACAAAACACTTTCTAGCTACTCCCT 59.928 40.000 0.00 0.00 0.00 4.20
2809 3069 5.408880 AAACACTTTCTAGCTACTCCCTC 57.591 43.478 0.00 0.00 0.00 4.30
2810 3070 3.367321 ACACTTTCTAGCTACTCCCTCC 58.633 50.000 0.00 0.00 0.00 4.30
2811 3071 2.359531 CACTTTCTAGCTACTCCCTCCG 59.640 54.545 0.00 0.00 0.00 4.63
2812 3072 2.025131 ACTTTCTAGCTACTCCCTCCGT 60.025 50.000 0.00 0.00 0.00 4.69
2813 3073 2.822707 TTCTAGCTACTCCCTCCGTT 57.177 50.000 0.00 0.00 0.00 4.44
2814 3074 2.345124 TCTAGCTACTCCCTCCGTTC 57.655 55.000 0.00 0.00 0.00 3.95
2815 3075 1.133853 TCTAGCTACTCCCTCCGTTCC 60.134 57.143 0.00 0.00 0.00 3.62
2816 3076 0.627451 TAGCTACTCCCTCCGTTCCA 59.373 55.000 0.00 0.00 0.00 3.53
2817 3077 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
2818 3078 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
2819 3079 1.209747 GCTACTCCCTCCGTTCCAAAT 59.790 52.381 0.00 0.00 0.00 2.32
2820 3080 2.355818 GCTACTCCCTCCGTTCCAAATT 60.356 50.000 0.00 0.00 0.00 1.82
2821 3081 3.118519 GCTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
2822 3082 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2823 3083 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2824 3084 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2825 3085 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2826 3086 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2827 3087 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2828 3088 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2829 3089 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2830 3090 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2831 3091 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2832 3092 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2833 3093 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2834 3094 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2835 3095 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2836 3096 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
2837 3097 4.092821 CCAAATTACTCGTCGCAGAAATGA 59.907 41.667 0.00 0.00 39.69 2.57
2838 3098 5.251081 CAAATTACTCGTCGCAGAAATGAG 58.749 41.667 0.00 0.00 39.69 2.90
2839 3099 3.570926 TTACTCGTCGCAGAAATGAGT 57.429 42.857 3.72 3.72 44.25 3.41
2840 3100 1.702886 ACTCGTCGCAGAAATGAGTG 58.297 50.000 0.00 0.00 41.82 3.51
2841 3101 1.000163 ACTCGTCGCAGAAATGAGTGT 60.000 47.619 0.00 0.00 41.82 3.55
2842 3102 2.228103 ACTCGTCGCAGAAATGAGTGTA 59.772 45.455 0.00 0.00 41.82 2.90
2843 3103 3.119459 ACTCGTCGCAGAAATGAGTGTAT 60.119 43.478 0.00 0.00 41.82 2.29
2844 3104 3.435566 TCGTCGCAGAAATGAGTGTATC 58.564 45.455 0.00 0.00 39.69 2.24
2845 3105 3.128764 TCGTCGCAGAAATGAGTGTATCT 59.871 43.478 0.00 0.00 39.69 1.98
2846 3106 4.334481 TCGTCGCAGAAATGAGTGTATCTA 59.666 41.667 0.00 0.00 39.69 1.98
2847 3107 4.672862 CGTCGCAGAAATGAGTGTATCTAG 59.327 45.833 0.00 0.00 39.69 2.43
2848 3108 5.504173 CGTCGCAGAAATGAGTGTATCTAGA 60.504 44.000 0.00 0.00 39.69 2.43
2849 3109 6.266323 GTCGCAGAAATGAGTGTATCTAGAA 58.734 40.000 0.00 0.00 39.69 2.10
2850 3110 6.197468 GTCGCAGAAATGAGTGTATCTAGAAC 59.803 42.308 0.00 0.00 39.69 3.01
2851 3111 6.095580 TCGCAGAAATGAGTGTATCTAGAACT 59.904 38.462 0.00 0.00 0.00 3.01
2852 3112 7.282450 TCGCAGAAATGAGTGTATCTAGAACTA 59.718 37.037 0.00 0.00 0.00 2.24
2853 3113 7.915923 CGCAGAAATGAGTGTATCTAGAACTAA 59.084 37.037 0.00 0.00 0.00 2.24
2854 3114 9.587772 GCAGAAATGAGTGTATCTAGAACTAAA 57.412 33.333 0.00 0.00 0.00 1.85
2882 3142 8.753497 ACATCTAGATATATCCATACTTGCGA 57.247 34.615 4.54 0.00 0.00 5.10
2883 3143 8.625651 ACATCTAGATATATCCATACTTGCGAC 58.374 37.037 4.54 0.00 0.00 5.19
2884 3144 8.624776 CATCTAGATATATCCATACTTGCGACA 58.375 37.037 4.54 0.00 0.00 4.35
2885 3145 8.575649 TCTAGATATATCCATACTTGCGACAA 57.424 34.615 9.18 0.00 0.00 3.18
2886 3146 8.678199 TCTAGATATATCCATACTTGCGACAAG 58.322 37.037 9.18 15.16 0.00 3.16
2887 3147 7.233389 AGATATATCCATACTTGCGACAAGT 57.767 36.000 22.53 22.53 0.00 3.16
2888 3148 8.349568 AGATATATCCATACTTGCGACAAGTA 57.650 34.615 24.52 24.52 37.18 2.24
2889 3149 8.803235 AGATATATCCATACTTGCGACAAGTAA 58.197 33.333 25.44 15.64 36.45 2.24
2890 3150 9.587772 GATATATCCATACTTGCGACAAGTAAT 57.412 33.333 25.44 19.44 36.45 1.89
2891 3151 9.944376 ATATATCCATACTTGCGACAAGTAATT 57.056 29.630 25.44 14.21 36.45 1.40
2892 3152 6.604735 ATCCATACTTGCGACAAGTAATTC 57.395 37.500 25.44 0.00 36.45 2.17
2893 3153 4.565166 TCCATACTTGCGACAAGTAATTCG 59.435 41.667 25.44 17.44 36.45 3.34
2894 3154 4.565166 CCATACTTGCGACAAGTAATTCGA 59.435 41.667 25.44 12.14 37.43 3.71
2895 3155 5.062934 CCATACTTGCGACAAGTAATTCGAA 59.937 40.000 25.44 0.00 37.43 3.71
2896 3156 4.385244 ACTTGCGACAAGTAATTCGAAC 57.615 40.909 19.21 0.00 37.43 3.95
2897 3157 3.121126 ACTTGCGACAAGTAATTCGAACG 60.121 43.478 19.21 0.00 37.43 3.95
2898 3158 1.722464 TGCGACAAGTAATTCGAACGG 59.278 47.619 0.00 0.00 37.43 4.44
2899 3159 1.987770 GCGACAAGTAATTCGAACGGA 59.012 47.619 0.00 0.00 37.43 4.69
2900 3160 2.601763 GCGACAAGTAATTCGAACGGAT 59.398 45.455 0.00 0.00 37.43 4.18
2901 3161 3.541516 GCGACAAGTAATTCGAACGGATG 60.542 47.826 0.00 0.00 37.43 3.51
2902 3162 3.855379 CGACAAGTAATTCGAACGGATGA 59.145 43.478 0.00 0.00 37.43 2.92
2903 3163 4.325204 CGACAAGTAATTCGAACGGATGAA 59.675 41.667 0.00 0.00 37.43 2.57
2904 3164 5.498700 CGACAAGTAATTCGAACGGATGAAG 60.499 44.000 0.00 0.00 37.43 3.02
2905 3165 5.235516 ACAAGTAATTCGAACGGATGAAGT 58.764 37.500 0.00 0.00 0.00 3.01
4395 4706 4.710167 AAGTACGGCCCGCCCAAC 62.710 66.667 1.23 0.00 0.00 3.77
4404 4715 3.353836 CCGCCCAACAAGTGACCG 61.354 66.667 0.00 0.00 0.00 4.79
4471 4792 4.508128 CCGTCCGTCCGTCCATGG 62.508 72.222 4.97 4.97 0.00 3.66
4473 4794 4.077184 GTCCGTCCGTCCATGGCA 62.077 66.667 6.96 0.00 0.00 4.92
4474 4795 3.080765 TCCGTCCGTCCATGGCAT 61.081 61.111 6.96 0.00 0.00 4.40
4475 4796 2.124736 CCGTCCGTCCATGGCATT 60.125 61.111 6.96 0.00 0.00 3.56
4476 4797 2.180204 CCGTCCGTCCATGGCATTC 61.180 63.158 6.96 0.00 0.00 2.67
4477 4798 1.449423 CGTCCGTCCATGGCATTCA 60.449 57.895 6.96 0.00 0.00 2.57
4501 4822 6.365518 CAGATTCAGCTAGCATACATACACTG 59.634 42.308 18.83 9.98 0.00 3.66
4523 4846 1.335182 TGCTGCTGCTACTAGTCGATC 59.665 52.381 17.00 0.00 40.48 3.69
4663 4986 9.534565 AGATTGTGCTAGTAGTTACATTACATG 57.465 33.333 9.29 0.00 0.00 3.21
4666 4989 8.871686 TGTGCTAGTAGTTACATTACATGATG 57.128 34.615 0.00 0.00 0.00 3.07
4667 4990 7.438160 TGTGCTAGTAGTTACATTACATGATGC 59.562 37.037 0.00 0.00 0.00 3.91
4668 4991 7.438160 GTGCTAGTAGTTACATTACATGATGCA 59.562 37.037 0.00 0.00 0.00 3.96
4669 4992 7.984617 TGCTAGTAGTTACATTACATGATGCAA 59.015 33.333 0.00 0.00 0.00 4.08
4670 4993 8.276325 GCTAGTAGTTACATTACATGATGCAAC 58.724 37.037 0.00 0.91 34.79 4.17
4671 4994 9.534565 CTAGTAGTTACATTACATGATGCAACT 57.465 33.333 14.25 14.25 42.97 3.16
4675 4998 8.158169 AGTTACATTACATGATGCAACTATGG 57.842 34.615 10.00 0.00 40.24 2.74
4720 5043 1.160329 AGTCAAGTCAAGTGGCGTGC 61.160 55.000 0.00 0.00 0.00 5.34
4764 5087 0.810648 TCATTCTTGGCCGAATGCAC 59.189 50.000 22.01 0.00 46.15 4.57
4781 5104 1.821216 CACAATAGACCGGCCTTGTT 58.179 50.000 0.00 0.00 29.74 2.83
4817 5140 3.621268 TCTCACCTTTCTTTGTTGACGTG 59.379 43.478 0.00 0.00 0.00 4.49
4834 5159 4.643334 TGACGTGCCTACATTACATACTCT 59.357 41.667 0.00 0.00 0.00 3.24
4835 5160 5.824097 TGACGTGCCTACATTACATACTCTA 59.176 40.000 0.00 0.00 0.00 2.43
4836 5161 6.489022 TGACGTGCCTACATTACATACTCTAT 59.511 38.462 0.00 0.00 0.00 1.98
4837 5162 6.678878 ACGTGCCTACATTACATACTCTATG 58.321 40.000 0.00 0.00 41.88 2.23
4865 5351 7.335627 TGTTTTCTTCTCTCTGGTTCTGTTAA 58.664 34.615 0.00 0.00 0.00 2.01
4880 5366 2.753452 CTGTTAAGAGGGAGCGACAGTA 59.247 50.000 0.00 0.00 32.12 2.74
4923 5409 5.708697 TCGTCATACTACATACATACCCCTG 59.291 44.000 0.00 0.00 0.00 4.45
4955 5441 4.090090 CAGGTACTCCTCTTCTTTCAGGA 58.910 47.826 0.00 0.00 43.07 3.86
4964 5451 6.546484 TCCTCTTCTTTCAGGAATCACAATT 58.454 36.000 0.00 0.00 35.75 2.32
4999 5486 3.313526 GCATGTCTGTCTGTTGTTGACTT 59.686 43.478 0.00 0.00 35.63 3.01
5004 5491 7.015226 TGTCTGTCTGTTGTTGACTTAATTG 57.985 36.000 0.00 0.00 35.63 2.32
5041 5561 9.811995 GGTACTATGTTAATGTTACATCACTCA 57.188 33.333 0.00 0.00 37.42 3.41
5101 5621 5.466127 AAAGAAATAAGGATAGGGCCACA 57.534 39.130 6.18 0.00 0.00 4.17
5104 5655 4.478686 AGAAATAAGGATAGGGCCACAACT 59.521 41.667 6.18 0.00 0.00 3.16
5109 5660 0.463833 GATAGGGCCACAACTTCCCG 60.464 60.000 6.18 0.00 44.70 5.14
5169 5720 9.412460 TGGTTGCTCTCAATTCTGAAATAATAT 57.588 29.630 0.00 0.00 34.29 1.28
5238 5789 4.457834 AGACAAATAAGAGAGTGGGACG 57.542 45.455 0.00 0.00 0.00 4.79
5266 5823 7.899841 CGTGATTGTAATGTAACTTCTCACATG 59.100 37.037 0.00 0.00 35.59 3.21
5272 5829 7.931407 TGTAATGTAACTTCTCACATGTTGACT 59.069 33.333 0.00 0.00 35.59 3.41
5274 5831 5.056480 TGTAACTTCTCACATGTTGACTGG 58.944 41.667 0.00 0.00 0.00 4.00
5277 5834 3.136443 ACTTCTCACATGTTGACTGGGAA 59.864 43.478 0.00 0.00 0.00 3.97
5279 5836 4.163441 TCTCACATGTTGACTGGGAAAA 57.837 40.909 0.00 0.00 0.00 2.29
5280 5837 4.531854 TCTCACATGTTGACTGGGAAAAA 58.468 39.130 0.00 0.00 0.00 1.94
5315 5872 3.196939 ACACTTGCCATTTTGCACATT 57.803 38.095 0.00 0.00 41.88 2.71
5317 5874 3.560896 ACACTTGCCATTTTGCACATTTC 59.439 39.130 0.00 0.00 41.88 2.17
5323 5880 4.272991 TGCCATTTTGCACATTTCAAGTTC 59.727 37.500 0.00 0.00 36.04 3.01
5325 5882 5.740406 CCATTTTGCACATTTCAAGTTCAC 58.260 37.500 0.00 0.00 0.00 3.18
5329 5886 4.446994 TGCACATTTCAAGTTCACAACA 57.553 36.364 0.00 0.00 0.00 3.33
5366 5927 6.932356 CTAGAAGAGCAGCAATTTATTGGA 57.068 37.500 0.00 0.00 38.21 3.53
5369 5930 4.382345 AGAGCAGCAATTTATTGGAAGC 57.618 40.909 0.00 0.00 38.21 3.86
5376 5937 2.923020 CAATTTATTGGAAGCGTGGCAC 59.077 45.455 7.79 7.79 34.22 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 7.282450 TGCAAAACCCGTTTTAATACCATTTTT 59.718 29.630 5.29 0.00 40.45 1.94
11 12 6.766467 TGCAAAACCCGTTTTAATACCATTTT 59.234 30.769 5.29 0.00 40.45 1.82
12 13 6.289064 TGCAAAACCCGTTTTAATACCATTT 58.711 32.000 5.29 0.00 40.45 2.32
13 14 5.855045 TGCAAAACCCGTTTTAATACCATT 58.145 33.333 5.29 0.00 40.45 3.16
14 15 5.470047 TGCAAAACCCGTTTTAATACCAT 57.530 34.783 5.29 0.00 40.45 3.55
15 16 4.931661 TGCAAAACCCGTTTTAATACCA 57.068 36.364 5.29 0.00 40.45 3.25
16 17 6.600246 TTTTGCAAAACCCGTTTTAATACC 57.400 33.333 20.46 0.00 40.45 2.73
43 44 9.937175 GGAATATACAAAACTAGCTTTTAGCAG 57.063 33.333 0.00 0.00 45.56 4.24
44 45 8.899771 GGGAATATACAAAACTAGCTTTTAGCA 58.100 33.333 0.00 0.00 45.56 3.49
45 46 8.899771 TGGGAATATACAAAACTAGCTTTTAGC 58.100 33.333 0.00 0.00 42.84 3.09
48 49 8.695456 CCATGGGAATATACAAAACTAGCTTTT 58.305 33.333 2.85 0.00 31.77 2.27
49 50 7.201911 GCCATGGGAATATACAAAACTAGCTTT 60.202 37.037 15.13 0.00 0.00 3.51
50 51 6.265422 GCCATGGGAATATACAAAACTAGCTT 59.735 38.462 15.13 0.00 0.00 3.74
51 52 5.770162 GCCATGGGAATATACAAAACTAGCT 59.230 40.000 15.13 0.00 0.00 3.32
52 53 5.770162 AGCCATGGGAATATACAAAACTAGC 59.230 40.000 15.13 0.00 0.00 3.42
53 54 8.784043 GTTAGCCATGGGAATATACAAAACTAG 58.216 37.037 15.13 0.00 0.00 2.57
54 55 7.442969 CGTTAGCCATGGGAATATACAAAACTA 59.557 37.037 15.13 0.00 0.00 2.24
55 56 6.262273 CGTTAGCCATGGGAATATACAAAACT 59.738 38.462 15.13 0.00 0.00 2.66
56 57 6.435428 CGTTAGCCATGGGAATATACAAAAC 58.565 40.000 15.13 3.23 0.00 2.43
57 58 5.009210 GCGTTAGCCATGGGAATATACAAAA 59.991 40.000 15.13 0.00 37.42 2.44
58 59 4.517453 GCGTTAGCCATGGGAATATACAAA 59.483 41.667 15.13 0.00 37.42 2.83
59 60 4.069304 GCGTTAGCCATGGGAATATACAA 58.931 43.478 15.13 0.00 37.42 2.41
60 61 3.670625 GCGTTAGCCATGGGAATATACA 58.329 45.455 15.13 0.00 37.42 2.29
74 75 0.462403 TTTGGATACCGGGCGTTAGC 60.462 55.000 6.32 0.00 44.18 3.09
75 76 1.292992 GTTTGGATACCGGGCGTTAG 58.707 55.000 6.32 0.00 0.00 2.34
76 77 0.612229 TGTTTGGATACCGGGCGTTA 59.388 50.000 6.32 0.00 0.00 3.18
77 78 0.250814 TTGTTTGGATACCGGGCGTT 60.251 50.000 6.32 0.00 0.00 4.84
78 79 0.956902 GTTGTTTGGATACCGGGCGT 60.957 55.000 6.32 0.00 0.00 5.68
79 80 1.650314 GGTTGTTTGGATACCGGGCG 61.650 60.000 6.32 0.00 0.00 6.13
80 81 1.317431 GGGTTGTTTGGATACCGGGC 61.317 60.000 6.32 0.00 32.61 6.13
81 82 0.681887 GGGGTTGTTTGGATACCGGG 60.682 60.000 6.32 0.00 32.61 5.73
82 83 0.330267 AGGGGTTGTTTGGATACCGG 59.670 55.000 0.00 0.00 32.61 5.28
83 84 2.209690 AAGGGGTTGTTTGGATACCG 57.790 50.000 0.00 0.00 32.61 4.02
84 85 4.579647 TCTAAGGGGTTGTTTGGATACC 57.420 45.455 0.00 0.00 0.00 2.73
85 86 7.746703 AGATATCTAAGGGGTTGTTTGGATAC 58.253 38.462 2.53 0.00 32.11 2.24
86 87 7.017254 GGAGATATCTAAGGGGTTGTTTGGATA 59.983 40.741 4.89 0.00 33.28 2.59
87 88 6.183361 GGAGATATCTAAGGGGTTGTTTGGAT 60.183 42.308 4.89 0.00 0.00 3.41
88 89 5.132144 GGAGATATCTAAGGGGTTGTTTGGA 59.868 44.000 4.89 0.00 0.00 3.53
89 90 5.104109 TGGAGATATCTAAGGGGTTGTTTGG 60.104 44.000 4.89 0.00 0.00 3.28
90 91 5.823045 GTGGAGATATCTAAGGGGTTGTTTG 59.177 44.000 4.89 0.00 0.00 2.93
91 92 5.396436 CGTGGAGATATCTAAGGGGTTGTTT 60.396 44.000 4.89 0.00 0.00 2.83
92 93 4.101119 CGTGGAGATATCTAAGGGGTTGTT 59.899 45.833 4.89 0.00 0.00 2.83
93 94 3.641906 CGTGGAGATATCTAAGGGGTTGT 59.358 47.826 4.89 0.00 0.00 3.32
94 95 3.006967 CCGTGGAGATATCTAAGGGGTTG 59.993 52.174 4.89 0.00 0.00 3.77
95 96 3.240302 CCGTGGAGATATCTAAGGGGTT 58.760 50.000 4.89 0.00 0.00 4.11
96 97 2.179424 ACCGTGGAGATATCTAAGGGGT 59.821 50.000 21.78 16.65 0.00 4.95
97 98 2.890814 ACCGTGGAGATATCTAAGGGG 58.109 52.381 21.78 16.18 0.00 4.79
98 99 3.439476 CGTACCGTGGAGATATCTAAGGG 59.561 52.174 18.52 18.52 0.00 3.95
99 100 3.439476 CCGTACCGTGGAGATATCTAAGG 59.561 52.174 4.89 5.60 0.00 2.69
100 101 4.321718 TCCGTACCGTGGAGATATCTAAG 58.678 47.826 4.89 0.00 0.00 2.18
101 102 4.356405 TCCGTACCGTGGAGATATCTAA 57.644 45.455 4.89 0.00 0.00 2.10
203 209 5.801350 TTCGCATATTTCCTGTCTTTCTG 57.199 39.130 0.00 0.00 0.00 3.02
260 266 8.585471 TTCCAGCATCTTGATCTATTCTTTTT 57.415 30.769 0.00 0.00 0.00 1.94
265 271 6.037610 ACGTTTTCCAGCATCTTGATCTATTC 59.962 38.462 0.00 0.00 0.00 1.75
268 274 4.832248 ACGTTTTCCAGCATCTTGATCTA 58.168 39.130 0.00 0.00 0.00 1.98
273 279 3.624326 TTGACGTTTTCCAGCATCTTG 57.376 42.857 0.00 0.00 0.00 3.02
299 305 1.458445 GGTCTTTACGAGTTTCCACGC 59.542 52.381 0.00 0.00 0.00 5.34
300 306 1.717645 CGGTCTTTACGAGTTTCCACG 59.282 52.381 0.00 0.00 0.00 4.94
301 307 2.728318 GACGGTCTTTACGAGTTTCCAC 59.272 50.000 0.00 0.00 34.93 4.02
302 308 2.288395 GGACGGTCTTTACGAGTTTCCA 60.288 50.000 8.23 0.00 34.93 3.53
303 309 2.332104 GGACGGTCTTTACGAGTTTCC 58.668 52.381 8.23 0.00 34.93 3.13
304 310 1.981533 CGGACGGTCTTTACGAGTTTC 59.018 52.381 8.23 0.00 34.93 2.78
305 311 1.338020 ACGGACGGTCTTTACGAGTTT 59.662 47.619 8.23 0.00 34.93 2.66
306 312 0.954452 ACGGACGGTCTTTACGAGTT 59.046 50.000 8.23 0.00 34.93 3.01
307 313 0.954452 AACGGACGGTCTTTACGAGT 59.046 50.000 8.23 0.00 34.93 4.18
330 336 1.893808 CGATCGAGCCATTTGGGGG 60.894 63.158 10.26 0.00 37.04 5.40
350 356 1.686587 GGTTTCTTGTCTTTGGGTGGG 59.313 52.381 0.00 0.00 0.00 4.61
369 375 2.184579 GAAAGGAGAGACGGGCGG 59.815 66.667 0.00 0.00 0.00 6.13
433 439 4.891727 ACGCGCCATGGATCGGTC 62.892 66.667 18.40 0.00 0.00 4.79
434 440 4.891727 GACGCGCCATGGATCGGT 62.892 66.667 18.40 10.41 0.00 4.69
561 589 1.299468 GTCGCCATGGTCTCGCTAG 60.299 63.158 14.67 0.00 0.00 3.42
573 601 3.545124 ATGGTTCCGCTTGTCGCCA 62.545 57.895 0.00 0.00 36.73 5.69
612 640 1.282875 GCGCTGGAAGACACCAAAC 59.717 57.895 0.00 0.00 39.59 2.93
632 660 1.737735 CATTGCCGCTCACGACTCA 60.738 57.895 0.00 0.00 43.93 3.41
815 843 2.791613 TATATAGGGGAGCCGGCGCA 62.792 60.000 31.51 11.73 37.52 6.09
840 868 1.128809 TTGGTTACGGGAGGCTGGAA 61.129 55.000 0.00 0.00 0.00 3.53
1227 1266 4.699522 ACGCGGGCCTTGAAGGAC 62.700 66.667 16.93 13.18 45.05 3.85
1228 1267 4.388499 GACGCGGGCCTTGAAGGA 62.388 66.667 16.93 0.00 37.67 3.36
1352 1391 2.456840 CAAGGAGGAGGGGGAGGT 59.543 66.667 0.00 0.00 0.00 3.85
1353 1392 3.093172 GCAAGGAGGAGGGGGAGG 61.093 72.222 0.00 0.00 0.00 4.30
1354 1393 3.093172 GGCAAGGAGGAGGGGGAG 61.093 72.222 0.00 0.00 0.00 4.30
1356 1395 4.767892 AGGGCAAGGAGGAGGGGG 62.768 72.222 0.00 0.00 0.00 5.40
1359 1398 1.680314 GCAAAGGGCAAGGAGGAGG 60.680 63.158 0.00 0.00 43.97 4.30
1361 1400 2.034066 CGCAAAGGGCAAGGAGGA 59.966 61.111 0.00 0.00 45.17 3.71
1400 1452 3.054503 GTCAGTGCTGGCTGGCTG 61.055 66.667 2.00 2.91 38.03 4.85
1401 1453 3.247648 AGTCAGTGCTGGCTGGCT 61.248 61.111 5.43 5.12 44.94 4.75
1402 1454 1.743252 GTAGTCAGTGCTGGCTGGC 60.743 63.158 15.71 5.68 46.28 4.85
1403 1455 0.108424 GAGTAGTCAGTGCTGGCTGG 60.108 60.000 15.71 0.00 46.28 4.85
1404 1456 0.108424 GGAGTAGTCAGTGCTGGCTG 60.108 60.000 15.71 0.00 46.28 4.85
1406 1458 0.174617 GAGGAGTAGTCAGTGCTGGC 59.825 60.000 0.00 0.00 34.93 4.85
1407 1459 1.550327 TGAGGAGTAGTCAGTGCTGG 58.450 55.000 0.00 0.00 0.00 4.85
1408 1460 3.883830 AATGAGGAGTAGTCAGTGCTG 57.116 47.619 0.00 0.00 0.00 4.41
1409 1461 6.552445 ATTAAATGAGGAGTAGTCAGTGCT 57.448 37.500 0.00 0.00 0.00 4.40
1410 1462 7.550906 AGAAATTAAATGAGGAGTAGTCAGTGC 59.449 37.037 0.00 0.00 0.00 4.40
1411 1463 9.092876 GAGAAATTAAATGAGGAGTAGTCAGTG 57.907 37.037 0.00 0.00 0.00 3.66
1412 1464 9.041354 AGAGAAATTAAATGAGGAGTAGTCAGT 57.959 33.333 0.00 0.00 0.00 3.41
1413 1465 9.883142 AAGAGAAATTAAATGAGGAGTAGTCAG 57.117 33.333 0.00 0.00 0.00 3.51
1416 1468 8.951243 GCAAAGAGAAATTAAATGAGGAGTAGT 58.049 33.333 0.00 0.00 0.00 2.73
1417 1469 9.171877 AGCAAAGAGAAATTAAATGAGGAGTAG 57.828 33.333 0.00 0.00 0.00 2.57
1418 1470 8.950210 CAGCAAAGAGAAATTAAATGAGGAGTA 58.050 33.333 0.00 0.00 0.00 2.59
1419 1471 7.094032 CCAGCAAAGAGAAATTAAATGAGGAGT 60.094 37.037 0.00 0.00 0.00 3.85
1420 1472 7.256286 CCAGCAAAGAGAAATTAAATGAGGAG 58.744 38.462 0.00 0.00 0.00 3.69
1421 1473 6.153340 CCCAGCAAAGAGAAATTAAATGAGGA 59.847 38.462 0.00 0.00 0.00 3.71
1422 1474 6.071165 ACCCAGCAAAGAGAAATTAAATGAGG 60.071 38.462 0.00 0.00 0.00 3.86
1438 1490 3.256383 CACTCATTCATTCACCCAGCAAA 59.744 43.478 0.00 0.00 0.00 3.68
1465 1517 0.680921 TATGAAACAGCCAGCCAGCC 60.681 55.000 0.00 0.00 0.00 4.85
1466 1518 1.336125 GATATGAAACAGCCAGCCAGC 59.664 52.381 0.00 0.00 0.00 4.85
1467 1519 1.600957 CGATATGAAACAGCCAGCCAG 59.399 52.381 0.00 0.00 0.00 4.85
1468 1520 1.065491 ACGATATGAAACAGCCAGCCA 60.065 47.619 0.00 0.00 0.00 4.75
1473 1525 3.131396 CCCACTACGATATGAAACAGCC 58.869 50.000 0.00 0.00 0.00 4.85
1487 1539 1.662122 CGTCAATTTACCGCCCACTAC 59.338 52.381 0.00 0.00 0.00 2.73
1638 1690 6.432783 TGACAGTAAGAAGAAGAGAGGAAGAG 59.567 42.308 0.00 0.00 0.00 2.85
1639 1691 6.307776 TGACAGTAAGAAGAAGAGAGGAAGA 58.692 40.000 0.00 0.00 0.00 2.87
1640 1692 6.582677 TGACAGTAAGAAGAAGAGAGGAAG 57.417 41.667 0.00 0.00 0.00 3.46
1641 1693 6.951198 AGATGACAGTAAGAAGAAGAGAGGAA 59.049 38.462 0.00 0.00 0.00 3.36
1642 1694 6.489603 AGATGACAGTAAGAAGAAGAGAGGA 58.510 40.000 0.00 0.00 0.00 3.71
1643 1695 6.773976 AGATGACAGTAAGAAGAAGAGAGG 57.226 41.667 0.00 0.00 0.00 3.69
1678 1733 7.592903 GTGAGGAAGAAGACAAATTAAAGCAAG 59.407 37.037 0.00 0.00 0.00 4.01
1679 1734 7.425606 GTGAGGAAGAAGACAAATTAAAGCAA 58.574 34.615 0.00 0.00 0.00 3.91
1681 1736 6.207614 AGGTGAGGAAGAAGACAAATTAAAGC 59.792 38.462 0.00 0.00 0.00 3.51
1693 1748 6.490040 TCAACCAAATTAAGGTGAGGAAGAAG 59.510 38.462 3.47 0.00 39.86 2.85
1738 1793 5.632347 GGTCGATCGAACGGACATTAATATT 59.368 40.000 21.31 0.00 0.00 1.28
1739 1794 5.159209 GGTCGATCGAACGGACATTAATAT 58.841 41.667 21.31 0.00 0.00 1.28
1740 1795 4.539870 GGTCGATCGAACGGACATTAATA 58.460 43.478 21.31 0.00 0.00 0.98
1741 1796 3.378339 GGTCGATCGAACGGACATTAAT 58.622 45.455 21.31 0.00 0.00 1.40
1742 1797 2.801063 GGTCGATCGAACGGACATTAA 58.199 47.619 21.31 0.00 0.00 1.40
1762 1817 2.070262 TTGGATATGCAGATCGAGCG 57.930 50.000 14.80 0.00 33.85 5.03
1827 1968 9.832445 CTTATTACTAGGTGATGTGGTAATTGT 57.168 33.333 0.00 0.00 35.55 2.71
1828 1969 9.832445 ACTTATTACTAGGTGATGTGGTAATTG 57.168 33.333 0.00 0.00 35.55 2.32
1834 1975 7.113658 ACAGACTTATTACTAGGTGATGTGG 57.886 40.000 0.00 0.00 0.00 4.17
1846 1987 5.919141 CCAGCCGTGTATACAGACTTATTAC 59.081 44.000 5.62 0.00 0.00 1.89
1847 1988 5.010314 CCCAGCCGTGTATACAGACTTATTA 59.990 44.000 5.62 0.00 0.00 0.98
1848 1989 4.202223 CCCAGCCGTGTATACAGACTTATT 60.202 45.833 5.62 0.00 0.00 1.40
1889 2035 1.500474 ATGTAGCTAGCTTGCCAGGA 58.500 50.000 24.88 0.00 0.00 3.86
1890 2036 2.103094 TGTATGTAGCTAGCTTGCCAGG 59.897 50.000 24.88 0.00 0.00 4.45
1891 2037 3.459232 TGTATGTAGCTAGCTTGCCAG 57.541 47.619 24.88 0.00 0.00 4.85
1892 2038 4.558697 CGTATGTATGTAGCTAGCTTGCCA 60.559 45.833 24.88 17.22 0.00 4.92
1893 2039 3.921021 CGTATGTATGTAGCTAGCTTGCC 59.079 47.826 24.88 11.91 0.00 4.52
1894 2040 4.547532 ACGTATGTATGTAGCTAGCTTGC 58.452 43.478 24.88 16.54 0.00 4.01
1911 2057 7.509141 TTTCATGATTGATTGCCATACGTAT 57.491 32.000 1.14 1.14 0.00 3.06
1914 2060 5.631929 CCATTTCATGATTGATTGCCATACG 59.368 40.000 0.00 0.00 0.00 3.06
1917 2063 5.365605 AGACCATTTCATGATTGATTGCCAT 59.634 36.000 0.00 0.00 0.00 4.40
1947 2112 3.789224 CCGTTCCGTTATTTTTAGCATGC 59.211 43.478 10.51 10.51 0.00 4.06
1960 2125 1.684983 TCTCTTCTGTTCCGTTCCGTT 59.315 47.619 0.00 0.00 0.00 4.44
1961 2126 1.000496 GTCTCTTCTGTTCCGTTCCGT 60.000 52.381 0.00 0.00 0.00 4.69
1962 2127 1.000607 TGTCTCTTCTGTTCCGTTCCG 60.001 52.381 0.00 0.00 0.00 4.30
1963 2128 2.814280 TGTCTCTTCTGTTCCGTTCC 57.186 50.000 0.00 0.00 0.00 3.62
1964 2129 3.914312 TCATGTCTCTTCTGTTCCGTTC 58.086 45.455 0.00 0.00 0.00 3.95
1977 2142 2.036992 CTGGCTACCTCCATCATGTCTC 59.963 54.545 0.00 0.00 35.22 3.36
1991 2156 1.021390 AACGCATGACTGCTGGCTAC 61.021 55.000 0.00 0.00 46.65 3.58
2019 2184 1.599576 GTGAGGTCAGGAGGGAAGC 59.400 63.158 0.00 0.00 0.00 3.86
2043 2208 2.750888 CCGCGTTTCCTAGCCAAGC 61.751 63.158 4.92 0.00 0.00 4.01
2086 2251 0.661552 ATTAGTTAGCGAGCGAGCGA 59.338 50.000 1.41 0.00 43.00 4.93
2087 2252 1.046230 GATTAGTTAGCGAGCGAGCG 58.954 55.000 0.00 0.00 43.00 5.03
2088 2253 2.121116 TGATTAGTTAGCGAGCGAGC 57.879 50.000 0.00 0.00 37.41 5.03
2089 2254 2.406691 GCATGATTAGTTAGCGAGCGAG 59.593 50.000 0.00 0.00 0.00 5.03
2109 2274 2.830186 TTTAGGCCCGGTGTGGATGC 62.830 60.000 0.00 0.00 42.00 3.91
2205 2380 2.208562 AATAGTGGAGGCCAGGGGGA 62.209 60.000 5.01 0.00 32.34 4.81
2206 2381 1.289244 AAATAGTGGAGGCCAGGGGG 61.289 60.000 5.01 0.00 32.34 5.40
2207 2382 0.106519 CAAATAGTGGAGGCCAGGGG 60.107 60.000 5.01 0.00 32.34 4.79
2208 2383 0.625849 ACAAATAGTGGAGGCCAGGG 59.374 55.000 5.01 0.00 32.34 4.45
2209 2384 3.545703 CTTACAAATAGTGGAGGCCAGG 58.454 50.000 5.01 0.00 32.34 4.45
2210 2385 2.945668 GCTTACAAATAGTGGAGGCCAG 59.054 50.000 5.01 0.00 37.18 4.85
2211 2386 2.999331 GCTTACAAATAGTGGAGGCCA 58.001 47.619 5.01 0.00 37.18 5.36
2213 2388 3.118223 AGAGGCTTACAAATAGTGGAGGC 60.118 47.826 0.00 0.00 42.56 4.70
2214 2389 4.762289 AGAGGCTTACAAATAGTGGAGG 57.238 45.455 0.00 0.00 0.00 4.30
2215 2390 5.749109 CGTTAGAGGCTTACAAATAGTGGAG 59.251 44.000 0.00 0.00 0.00 3.86
2216 2391 5.394883 CCGTTAGAGGCTTACAAATAGTGGA 60.395 44.000 0.00 0.00 0.00 4.02
2254 2429 6.163135 TGTTATTCTAGGAAGGAAGCTAGC 57.837 41.667 6.62 6.62 0.00 3.42
2255 2430 9.699703 GTTATGTTATTCTAGGAAGGAAGCTAG 57.300 37.037 0.00 0.00 0.00 3.42
2257 2432 8.090788 TGTTATGTTATTCTAGGAAGGAAGCT 57.909 34.615 0.00 0.00 0.00 3.74
2258 2433 8.910351 ATGTTATGTTATTCTAGGAAGGAAGC 57.090 34.615 0.00 0.00 0.00 3.86
2261 2436 9.613428 CACAATGTTATGTTATTCTAGGAAGGA 57.387 33.333 0.00 0.00 0.00 3.36
2262 2437 8.840321 CCACAATGTTATGTTATTCTAGGAAGG 58.160 37.037 0.00 0.00 0.00 3.46
2263 2438 8.345565 GCCACAATGTTATGTTATTCTAGGAAG 58.654 37.037 0.00 0.00 0.00 3.46
2264 2439 7.011950 CGCCACAATGTTATGTTATTCTAGGAA 59.988 37.037 0.00 0.00 0.00 3.36
2265 2440 6.481976 CGCCACAATGTTATGTTATTCTAGGA 59.518 38.462 0.00 0.00 0.00 2.94
2266 2441 6.260050 ACGCCACAATGTTATGTTATTCTAGG 59.740 38.462 0.00 0.00 0.00 3.02
2267 2442 7.246674 ACGCCACAATGTTATGTTATTCTAG 57.753 36.000 0.00 0.00 0.00 2.43
2268 2443 7.618502 AACGCCACAATGTTATGTTATTCTA 57.381 32.000 0.00 0.00 0.00 2.10
2269 2444 6.509418 AACGCCACAATGTTATGTTATTCT 57.491 33.333 0.00 0.00 0.00 2.40
2270 2445 6.804295 TGAAACGCCACAATGTTATGTTATTC 59.196 34.615 0.00 0.00 0.00 1.75
2271 2446 6.682746 TGAAACGCCACAATGTTATGTTATT 58.317 32.000 0.00 0.00 0.00 1.40
2272 2447 6.260870 TGAAACGCCACAATGTTATGTTAT 57.739 33.333 0.00 0.00 0.00 1.89
2273 2448 5.690997 TGAAACGCCACAATGTTATGTTA 57.309 34.783 0.00 0.00 0.00 2.41
2274 2449 4.576216 TGAAACGCCACAATGTTATGTT 57.424 36.364 0.00 0.00 0.00 2.71
2275 2450 4.576216 TTGAAACGCCACAATGTTATGT 57.424 36.364 0.00 0.00 0.00 2.29
2276 2451 4.981674 ACTTTGAAACGCCACAATGTTATG 59.018 37.500 0.00 0.00 33.02 1.90
2348 2523 3.365265 GCCTTGCCACTCCAACGG 61.365 66.667 0.00 0.00 0.00 4.44
2401 2576 4.487412 GAATGCGCTGCAGTGGCC 62.487 66.667 27.56 13.14 43.65 5.36
2413 2588 1.880340 CTGTCCGCTCTCCGAATGC 60.880 63.158 0.00 0.00 40.02 3.56
2448 2623 9.914131 TCTCTCTGTGTTTACATGTATATATGC 57.086 33.333 6.36 0.00 35.97 3.14
2465 2640 1.684142 CGCGCATATCTCTCTCTGTG 58.316 55.000 8.75 0.00 0.00 3.66
2467 2642 0.039708 TGCGCGCATATCTCTCTCTG 60.040 55.000 33.09 0.00 0.00 3.35
2523 2770 2.033550 TGTTTGTATTGGAACGGTGCAC 59.966 45.455 8.80 8.80 0.00 4.57
2537 2784 9.227490 GCGCATAAATATACAACAATGTTTGTA 57.773 29.630 0.30 3.61 44.59 2.41
2539 2786 7.265916 CGCGCATAAATATACAACAATGTTTG 58.734 34.615 8.75 0.00 41.05 2.93
2540 2787 6.416455 CCGCGCATAAATATACAACAATGTTT 59.584 34.615 8.75 0.00 41.05 2.83
2562 2813 2.127383 CACCGTTCTTTTCGCCGC 60.127 61.111 0.00 0.00 0.00 6.53
2609 2863 4.796038 AGAAATGGAGCATTTGACCAAG 57.204 40.909 0.00 0.00 43.05 3.61
2637 2891 6.018507 GGTTGATGTTAACACGACCCATATAC 60.019 42.308 23.65 10.07 32.22 1.47
2684 2940 9.217278 GGATCCTCATCATATTCATATATGCAC 57.783 37.037 3.84 0.00 42.18 4.57
2698 2954 2.694397 TCCGGAAAGGATCCTCATCAT 58.306 47.619 16.52 0.00 46.98 2.45
2699 2955 2.174685 TCCGGAAAGGATCCTCATCA 57.825 50.000 16.52 0.00 46.98 3.07
2781 3041 6.368243 GGAGTAGCTAGAAAGTGTTTTGTACC 59.632 42.308 0.00 0.00 0.00 3.34
2802 3062 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2803 3063 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2804 3064 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2805 3065 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2806 3066 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2807 3067 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2808 3068 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2809 3069 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
2810 3070 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2811 3071 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
2812 3072 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
2813 3073 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
2814 3074 4.092821 TCATTTCTGCGACGAGTAATTTGG 59.907 41.667 0.00 0.00 0.00 3.28
2815 3075 5.163953 ACTCATTTCTGCGACGAGTAATTTG 60.164 40.000 0.00 0.00 35.24 2.32
2816 3076 4.929808 ACTCATTTCTGCGACGAGTAATTT 59.070 37.500 0.00 0.00 35.24 1.82
2817 3077 4.327357 CACTCATTTCTGCGACGAGTAATT 59.673 41.667 0.00 0.00 35.24 1.40
2818 3078 3.859961 CACTCATTTCTGCGACGAGTAAT 59.140 43.478 0.00 0.00 35.24 1.89
2819 3079 3.242518 CACTCATTTCTGCGACGAGTAA 58.757 45.455 0.00 0.00 35.24 2.24
2820 3080 2.228103 ACACTCATTTCTGCGACGAGTA 59.772 45.455 0.00 0.00 35.24 2.59
2821 3081 1.000163 ACACTCATTTCTGCGACGAGT 60.000 47.619 0.00 0.00 37.42 4.18
2822 3082 1.702886 ACACTCATTTCTGCGACGAG 58.297 50.000 0.00 0.00 0.00 4.18
2823 3083 3.128764 AGATACACTCATTTCTGCGACGA 59.871 43.478 0.00 0.00 0.00 4.20
2824 3084 3.439293 AGATACACTCATTTCTGCGACG 58.561 45.455 0.00 0.00 0.00 5.12
2825 3085 5.822278 TCTAGATACACTCATTTCTGCGAC 58.178 41.667 0.00 0.00 0.00 5.19
2826 3086 6.095580 AGTTCTAGATACACTCATTTCTGCGA 59.904 38.462 0.00 0.00 0.00 5.10
2827 3087 6.269315 AGTTCTAGATACACTCATTTCTGCG 58.731 40.000 0.00 0.00 0.00 5.18
2828 3088 9.587772 TTTAGTTCTAGATACACTCATTTCTGC 57.412 33.333 0.00 0.00 0.00 4.26
2856 3116 9.847224 TCGCAAGTATGGATATATCTAGATGTA 57.153 33.333 15.79 13.32 39.48 2.29
2857 3117 8.625651 GTCGCAAGTATGGATATATCTAGATGT 58.374 37.037 15.79 11.37 39.48 3.06
2858 3118 8.624776 TGTCGCAAGTATGGATATATCTAGATG 58.375 37.037 15.79 1.93 39.48 2.90
2859 3119 8.753497 TGTCGCAAGTATGGATATATCTAGAT 57.247 34.615 10.73 10.73 39.48 1.98
2860 3120 8.575649 TTGTCGCAAGTATGGATATATCTAGA 57.424 34.615 12.42 0.76 39.48 2.43
2861 3121 8.462811 ACTTGTCGCAAGTATGGATATATCTAG 58.537 37.037 19.21 0.00 39.48 2.43
2862 3122 8.349568 ACTTGTCGCAAGTATGGATATATCTA 57.650 34.615 19.21 6.97 39.48 1.98
2863 3123 7.233389 ACTTGTCGCAAGTATGGATATATCT 57.767 36.000 19.21 0.00 39.48 1.98
2864 3124 8.981724 TTACTTGTCGCAAGTATGGATATATC 57.018 34.615 23.59 3.96 33.27 1.63
2865 3125 9.944376 AATTACTTGTCGCAAGTATGGATATAT 57.056 29.630 23.59 14.31 33.27 0.86
2866 3126 9.419297 GAATTACTTGTCGCAAGTATGGATATA 57.581 33.333 23.59 13.16 33.27 0.86
2867 3127 7.116376 CGAATTACTTGTCGCAAGTATGGATAT 59.884 37.037 23.59 15.28 33.27 1.63
2868 3128 6.419710 CGAATTACTTGTCGCAAGTATGGATA 59.580 38.462 23.59 14.15 33.27 2.59
2869 3129 5.234329 CGAATTACTTGTCGCAAGTATGGAT 59.766 40.000 23.59 15.77 33.27 3.41
2870 3130 4.565166 CGAATTACTTGTCGCAAGTATGGA 59.435 41.667 23.59 14.66 33.27 3.41
2871 3131 4.565166 TCGAATTACTTGTCGCAAGTATGG 59.435 41.667 23.59 15.40 37.19 2.74
2872 3132 5.696260 TCGAATTACTTGTCGCAAGTATG 57.304 39.130 23.59 16.74 37.19 2.39
2873 3133 5.220154 CGTTCGAATTACTTGTCGCAAGTAT 60.220 40.000 23.59 14.96 37.19 2.12
2874 3134 4.088923 CGTTCGAATTACTTGTCGCAAGTA 59.911 41.667 20.95 20.95 37.19 2.24
2875 3135 3.121126 CGTTCGAATTACTTGTCGCAAGT 60.121 43.478 22.53 22.53 37.19 3.16
2876 3136 3.395671 CGTTCGAATTACTTGTCGCAAG 58.604 45.455 15.16 15.16 37.19 4.01
2877 3137 2.156117 CCGTTCGAATTACTTGTCGCAA 59.844 45.455 0.00 0.00 37.19 4.85
2878 3138 1.722464 CCGTTCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 37.19 5.10
2879 3139 1.987770 TCCGTTCGAATTACTTGTCGC 59.012 47.619 0.00 0.00 37.19 5.19
2880 3140 3.855379 TCATCCGTTCGAATTACTTGTCG 59.145 43.478 0.00 0.00 38.62 4.35
2881 3141 5.347907 ACTTCATCCGTTCGAATTACTTGTC 59.652 40.000 0.00 0.00 0.00 3.18
2882 3142 5.235516 ACTTCATCCGTTCGAATTACTTGT 58.764 37.500 0.00 0.00 0.00 3.16
2883 3143 5.779806 ACTTCATCCGTTCGAATTACTTG 57.220 39.130 0.00 0.00 0.00 3.16
2884 3144 6.860080 TCTACTTCATCCGTTCGAATTACTT 58.140 36.000 0.00 0.00 0.00 2.24
2885 3145 6.446781 TCTACTTCATCCGTTCGAATTACT 57.553 37.500 0.00 0.00 0.00 2.24
2886 3146 6.916387 TGATCTACTTCATCCGTTCGAATTAC 59.084 38.462 0.00 0.00 0.00 1.89
2887 3147 7.034685 TGATCTACTTCATCCGTTCGAATTA 57.965 36.000 0.00 0.00 0.00 1.40
2888 3148 5.902681 TGATCTACTTCATCCGTTCGAATT 58.097 37.500 0.00 0.00 0.00 2.17
2889 3149 5.515797 TGATCTACTTCATCCGTTCGAAT 57.484 39.130 0.00 0.00 0.00 3.34
2890 3150 4.976224 TGATCTACTTCATCCGTTCGAA 57.024 40.909 0.00 0.00 0.00 3.71
2891 3151 4.976224 TTGATCTACTTCATCCGTTCGA 57.024 40.909 0.00 0.00 0.00 3.71
2892 3152 6.403333 TTTTTGATCTACTTCATCCGTTCG 57.597 37.500 0.00 0.00 0.00 3.95
2951 3211 2.723322 TGCTTCCTTCCTCCATCATG 57.277 50.000 0.00 0.00 0.00 3.07
2953 3213 1.213678 CCATGCTTCCTTCCTCCATCA 59.786 52.381 0.00 0.00 0.00 3.07
2954 3214 1.978454 CCATGCTTCCTTCCTCCATC 58.022 55.000 0.00 0.00 0.00 3.51
2955 3215 0.106318 GCCATGCTTCCTTCCTCCAT 60.106 55.000 0.00 0.00 0.00 3.41
2956 3216 1.304282 GCCATGCTTCCTTCCTCCA 59.696 57.895 0.00 0.00 0.00 3.86
2957 3217 0.106318 ATGCCATGCTTCCTTCCTCC 60.106 55.000 0.00 0.00 0.00 4.30
2958 3218 1.030457 CATGCCATGCTTCCTTCCTC 58.970 55.000 0.00 0.00 0.00 3.71
2959 3219 3.202548 CATGCCATGCTTCCTTCCT 57.797 52.632 0.00 0.00 0.00 3.36
4386 4697 2.983592 GGTCACTTGTTGGGCGGG 60.984 66.667 0.00 0.00 0.00 6.13
4395 4706 1.720694 AAACGGTTGGCGGTCACTTG 61.721 55.000 0.00 0.00 0.00 3.16
4404 4715 0.026285 CGATCGATCAAACGGTTGGC 59.974 55.000 24.40 5.12 35.29 4.52
4471 4792 4.753610 TGTATGCTAGCTGAATCTGAATGC 59.246 41.667 17.23 1.79 0.00 3.56
4473 4794 7.601886 GTGTATGTATGCTAGCTGAATCTGAAT 59.398 37.037 17.23 0.00 0.00 2.57
4474 4795 6.925718 GTGTATGTATGCTAGCTGAATCTGAA 59.074 38.462 17.23 0.00 0.00 3.02
4475 4796 6.266330 AGTGTATGTATGCTAGCTGAATCTGA 59.734 38.462 17.23 0.00 0.00 3.27
4476 4797 6.365518 CAGTGTATGTATGCTAGCTGAATCTG 59.634 42.308 17.23 8.82 0.00 2.90
4477 4798 6.453943 CAGTGTATGTATGCTAGCTGAATCT 58.546 40.000 17.23 0.00 0.00 2.40
4501 4822 0.869454 CGACTAGTAGCAGCAGCAGC 60.869 60.000 3.17 0.46 45.49 5.25
4540 4863 6.823497 ACAAACAGGTACTAGTACACAACAT 58.177 36.000 29.38 11.66 36.02 2.71
4547 4870 7.064966 ACACAACAAACAAACAGGTACTAGTAC 59.935 37.037 22.53 22.53 36.02 2.73
4548 4871 7.104939 ACACAACAAACAAACAGGTACTAGTA 58.895 34.615 0.00 0.00 36.02 1.82
4549 4872 5.941647 ACACAACAAACAAACAGGTACTAGT 59.058 36.000 0.00 0.00 36.02 2.57
4550 4873 6.431198 ACACAACAAACAAACAGGTACTAG 57.569 37.500 0.00 0.00 36.02 2.57
4551 4874 5.354792 GGACACAACAAACAAACAGGTACTA 59.645 40.000 0.00 0.00 36.02 1.82
4552 4875 4.157105 GGACACAACAAACAAACAGGTACT 59.843 41.667 0.00 0.00 43.88 2.73
4553 4876 4.157105 AGGACACAACAAACAAACAGGTAC 59.843 41.667 0.00 0.00 0.00 3.34
4658 4981 6.178607 ACAGATCCATAGTTGCATCATGTA 57.821 37.500 0.00 0.00 0.00 2.29
4660 4983 4.151867 CGACAGATCCATAGTTGCATCATG 59.848 45.833 0.00 0.00 0.00 3.07
4661 4984 4.202295 ACGACAGATCCATAGTTGCATCAT 60.202 41.667 0.00 0.00 0.00 2.45
4662 4985 3.132824 ACGACAGATCCATAGTTGCATCA 59.867 43.478 0.00 0.00 0.00 3.07
4663 4986 3.492383 CACGACAGATCCATAGTTGCATC 59.508 47.826 0.00 0.00 0.00 3.91
4665 4988 2.233676 ACACGACAGATCCATAGTTGCA 59.766 45.455 0.00 0.00 0.00 4.08
4666 4989 2.860735 GACACGACAGATCCATAGTTGC 59.139 50.000 0.00 0.00 0.00 4.17
4667 4990 4.110036 TGACACGACAGATCCATAGTTG 57.890 45.455 0.00 0.00 0.00 3.16
4668 4991 5.344743 AATGACACGACAGATCCATAGTT 57.655 39.130 0.00 0.00 0.00 2.24
4669 4992 5.127845 AGAAATGACACGACAGATCCATAGT 59.872 40.000 0.00 0.00 0.00 2.12
4670 4993 5.595885 AGAAATGACACGACAGATCCATAG 58.404 41.667 0.00 0.00 0.00 2.23
4671 4994 5.598416 AGAAATGACACGACAGATCCATA 57.402 39.130 0.00 0.00 0.00 2.74
4672 4995 4.478206 AGAAATGACACGACAGATCCAT 57.522 40.909 0.00 0.00 0.00 3.41
4673 4996 3.961480 AGAAATGACACGACAGATCCA 57.039 42.857 0.00 0.00 0.00 3.41
4674 4997 5.812642 ACATAAGAAATGACACGACAGATCC 59.187 40.000 0.00 0.00 0.00 3.36
4675 4998 6.237942 CCACATAAGAAATGACACGACAGATC 60.238 42.308 0.00 0.00 0.00 2.75
4720 5043 5.338559 CGTTTCCAACTTAGCATTACAAACG 59.661 40.000 0.00 0.00 38.07 3.60
4764 5087 1.094785 CCAACAAGGCCGGTCTATTG 58.905 55.000 20.87 20.87 0.00 1.90
4834 5159 8.816894 AGAACCAGAGAGAAGAAAACATACATA 58.183 33.333 0.00 0.00 0.00 2.29
4835 5160 7.605691 CAGAACCAGAGAGAAGAAAACATACAT 59.394 37.037 0.00 0.00 0.00 2.29
4836 5161 6.931281 CAGAACCAGAGAGAAGAAAACATACA 59.069 38.462 0.00 0.00 0.00 2.29
4837 5162 6.931840 ACAGAACCAGAGAGAAGAAAACATAC 59.068 38.462 0.00 0.00 0.00 2.39
4865 5351 2.145397 TGAATACTGTCGCTCCCTCT 57.855 50.000 0.00 0.00 0.00 3.69
4936 5422 6.103330 GTGATTCCTGAAAGAAGAGGAGTAC 58.897 44.000 0.00 0.00 39.59 2.73
5074 5594 7.560262 GTGGCCCTATCCTTATTTCTTTTAACT 59.440 37.037 0.00 0.00 0.00 2.24
5097 5617 2.359975 GGGAGCGGGAAGTTGTGG 60.360 66.667 0.00 0.00 0.00 4.17
5101 5621 0.250770 GAAGTTGGGAGCGGGAAGTT 60.251 55.000 0.00 0.00 0.00 2.66
5104 5655 1.125093 TCTGAAGTTGGGAGCGGGAA 61.125 55.000 0.00 0.00 0.00 3.97
5109 5660 2.147150 GTTCTGTCTGAAGTTGGGAGC 58.853 52.381 0.00 0.00 35.01 4.70
5169 5720 8.474710 AGTAGGTTGAGACAAGTTTAGAGTTA 57.525 34.615 0.00 0.00 0.00 2.24
5238 5789 5.350365 TGAGAAGTTACATTACAATCACGGC 59.650 40.000 0.00 0.00 0.00 5.68
5280 5837 4.262851 GGCAAGTGTACATGGGGAATTTTT 60.263 41.667 0.00 0.00 0.00 1.94
5281 5838 3.260632 GGCAAGTGTACATGGGGAATTTT 59.739 43.478 0.00 0.00 0.00 1.82
5282 5839 2.831526 GGCAAGTGTACATGGGGAATTT 59.168 45.455 0.00 0.00 0.00 1.82
5283 5840 2.225242 TGGCAAGTGTACATGGGGAATT 60.225 45.455 0.00 0.00 0.00 2.17
5284 5841 1.357420 TGGCAAGTGTACATGGGGAAT 59.643 47.619 0.00 0.00 0.00 3.01
5315 5872 5.913137 AGGAAATGTGTTGTGAACTTGAA 57.087 34.783 0.00 0.00 0.00 2.69
5317 5874 6.208644 CCTTAGGAAATGTGTTGTGAACTTG 58.791 40.000 0.00 0.00 0.00 3.16
5323 5880 3.157087 AGCCCTTAGGAAATGTGTTGTG 58.843 45.455 0.00 0.00 33.47 3.33
5325 5882 4.843728 TCTAGCCCTTAGGAAATGTGTTG 58.156 43.478 0.00 0.00 33.47 3.33
5329 5886 4.141597 GCTCTTCTAGCCCTTAGGAAATGT 60.142 45.833 0.00 0.00 46.25 2.71
5366 5927 2.818130 ATTGAAATTGTGCCACGCTT 57.182 40.000 0.00 0.00 0.00 4.68
5369 5930 5.594724 ATTGAAATTGAAATTGTGCCACG 57.405 34.783 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.