Multiple sequence alignment - TraesCS3A01G301100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G301100 chr3A 100.000 6431 0 0 1 6431 534997409 535003839 0.000000e+00 11876.0
1 TraesCS3A01G301100 chr3A 91.958 286 22 1 3003 3287 44433584 44433299 3.610000e-107 399.0
2 TraesCS3A01G301100 chr3A 90.909 264 24 0 3906 4169 44433222 44432959 7.930000e-94 355.0
3 TraesCS3A01G301100 chr3A 87.075 294 29 4 1333 1617 44434233 44433940 2.240000e-84 324.0
4 TraesCS3A01G301100 chr3A 87.209 258 30 2 1624 1878 44433876 44433619 2.270000e-74 291.0
5 TraesCS3A01G301100 chr3A 86.235 247 15 8 6163 6408 146886908 146887136 3.850000e-62 250.0
6 TraesCS3A01G301100 chr3A 88.554 166 17 1 4232 4395 44432845 44432680 3.930000e-47 200.0
7 TraesCS3A01G301100 chr3A 84.884 172 20 3 5086 5252 44432392 44432222 1.110000e-37 169.0
8 TraesCS3A01G301100 chr3D 93.834 2887 114 20 1 2839 415543767 415540897 0.000000e+00 4287.0
9 TraesCS3A01G301100 chr3D 92.764 2847 126 26 2995 5785 415540898 415538076 0.000000e+00 4043.0
10 TraesCS3A01G301100 chr3D 91.376 545 24 9 5889 6430 415537913 415537389 0.000000e+00 725.0
11 TraesCS3A01G301100 chr3D 83.600 500 53 18 3906 4380 31726133 31725638 5.920000e-120 442.0
12 TraesCS3A01G301100 chr3D 91.065 291 20 3 3003 3287 31726511 31726221 7.820000e-104 388.0
13 TraesCS3A01G301100 chr3D 87.633 283 31 3 1010 1288 31727582 31727300 6.220000e-85 326.0
14 TraesCS3A01G301100 chr3D 80.583 206 30 7 5055 5252 31725406 31725203 4.020000e-32 150.0
15 TraesCS3A01G301100 chr3B 93.500 2523 94 29 349 2839 541524034 541521550 0.000000e+00 3687.0
16 TraesCS3A01G301100 chr3B 93.574 2054 82 18 2995 5018 541521551 541519518 0.000000e+00 3016.0
17 TraesCS3A01G301100 chr3B 86.484 1095 73 34 5020 6049 541519473 541518389 0.000000e+00 1133.0
18 TraesCS3A01G301100 chr3B 90.451 377 14 11 6057 6431 541518220 541517864 1.620000e-130 477.0
19 TraesCS3A01G301100 chr3B 90.493 284 16 3 71 353 541526699 541526426 1.320000e-96 364.0
20 TraesCS3A01G301100 chr3B 85.185 270 18 10 6163 6430 518933881 518934130 2.300000e-64 257.0
21 TraesCS3A01G301100 chr3B 90.698 172 13 3 4232 4400 53816097 53815926 6.490000e-55 226.0
22 TraesCS3A01G301100 chr3B 85.446 213 11 7 6163 6373 515160347 515160153 3.040000e-48 204.0
23 TraesCS3A01G301100 chr3B 96.154 78 3 0 1 78 541526955 541526878 1.880000e-25 128.0
24 TraesCS3A01G301100 chr6D 79.552 1027 134 51 3729 4713 449483942 449484934 0.000000e+00 664.0
25 TraesCS3A01G301100 chr6D 90.685 365 26 5 2998 3357 449483410 449483771 4.510000e-131 479.0
26 TraesCS3A01G301100 chr6D 90.809 272 25 0 1351 1622 449482046 449482317 1.320000e-96 364.0
27 TraesCS3A01G301100 chr6D 86.786 280 32 5 1631 1906 449482355 449482633 2.250000e-79 307.0
28 TraesCS3A01G301100 chr6D 84.797 296 38 4 1019 1307 449481585 449481880 2.270000e-74 291.0
29 TraesCS3A01G301100 chr6B 79.119 1044 137 46 3733 4729 681088215 681089224 0.000000e+00 645.0
30 TraesCS3A01G301100 chr6B 86.213 573 61 7 1351 1906 681086348 681086919 7.130000e-169 604.0
31 TraesCS3A01G301100 chr6B 78.074 1049 150 48 3728 4729 681415148 681416163 2.000000e-164 590.0
32 TraesCS3A01G301100 chr6B 85.205 561 58 13 1351 1906 681413297 681413837 2.620000e-153 553.0
33 TraesCS3A01G301100 chr6B 84.452 566 54 19 2998 3557 681087671 681088208 1.590000e-145 527.0
34 TraesCS3A01G301100 chr6B 90.678 354 25 7 3009 3357 681414624 681414974 1.260000e-126 464.0
35 TraesCS3A01G301100 chr6B 86.408 309 32 7 1009 1307 681085870 681086178 4.810000e-86 329.0
36 TraesCS3A01G301100 chr6B 95.597 159 7 0 2839 2997 226361676 226361518 8.270000e-64 255.0
37 TraesCS3A01G301100 chr6B 94.479 163 5 2 2839 3001 377935537 377935695 1.380000e-61 248.0
38 TraesCS3A01G301100 chr6B 86.047 172 18 3 5085 5252 681089400 681089569 5.120000e-41 180.0
39 TraesCS3A01G301100 chr6B 84.663 163 20 2 5094 5252 681416345 681416506 2.400000e-34 158.0
40 TraesCS3A01G301100 chr6A 79.810 946 114 49 3728 4618 595184917 595185840 9.160000e-173 617.0
41 TraesCS3A01G301100 chr6A 84.588 558 67 12 1351 1889 595183350 595183907 2.640000e-148 536.0
42 TraesCS3A01G301100 chr6A 91.411 326 23 2 2996 3316 595184356 595184681 5.920000e-120 442.0
43 TraesCS3A01G301100 chr6A 85.417 240 30 4 1021 1256 595182882 595183120 1.790000e-60 244.0
44 TraesCS3A01G301100 chr1A 87.854 247 11 6 6163 6408 137798274 137798502 8.220000e-69 272.0
45 TraesCS3A01G301100 chr7D 95.031 161 8 0 2839 2999 454079250 454079410 2.980000e-63 254.0
46 TraesCS3A01G301100 chr2B 95.541 157 7 0 2841 2997 608226881 608226725 1.070000e-62 252.0
47 TraesCS3A01G301100 chr4D 94.969 159 8 0 2839 2997 34661685 34661527 3.850000e-62 250.0
48 TraesCS3A01G301100 chr4A 94.969 159 8 0 2839 2997 137967137 137966979 3.850000e-62 250.0
49 TraesCS3A01G301100 chr4A 94.969 159 8 0 2839 2997 137972672 137972830 3.850000e-62 250.0
50 TraesCS3A01G301100 chr4A 94.286 35 2 0 460 494 59673998 59673964 3.000000e-03 54.7
51 TraesCS3A01G301100 chr2D 94.969 159 8 0 2839 2997 134301646 134301488 3.850000e-62 250.0
52 TraesCS3A01G301100 chr5D 94.410 161 9 0 2839 2999 529218324 529218164 1.380000e-61 248.0
53 TraesCS3A01G301100 chrUn 85.915 213 10 7 6163 6373 4345387 4345581 6.530000e-50 209.0
54 TraesCS3A01G301100 chrUn 85.915 213 10 7 6163 6373 131819065 131818871 6.530000e-50 209.0
55 TraesCS3A01G301100 chrUn 85.915 213 10 7 6163 6373 378239727 378239921 6.530000e-50 209.0
56 TraesCS3A01G301100 chr7A 87.302 126 7 3 6283 6408 500548552 500548668 1.120000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G301100 chr3A 534997409 535003839 6430 False 11876.000000 11876 100.00000 1 6431 1 chr3A.!!$F2 6430
1 TraesCS3A01G301100 chr3A 44432222 44434233 2011 True 289.666667 399 88.43150 1333 5252 6 chr3A.!!$R1 3919
2 TraesCS3A01G301100 chr3D 415537389 415543767 6378 True 3018.333333 4287 92.65800 1 6430 3 chr3D.!!$R2 6429
3 TraesCS3A01G301100 chr3D 31725203 31727582 2379 True 326.500000 442 85.72025 1010 5252 4 chr3D.!!$R1 4242
4 TraesCS3A01G301100 chr3B 541517864 541526955 9091 True 1467.500000 3687 91.77600 1 6431 6 chr3B.!!$R3 6430
5 TraesCS3A01G301100 chr6D 449481585 449484934 3349 False 421.000000 664 86.52580 1019 4713 5 chr6D.!!$F1 3694
6 TraesCS3A01G301100 chr6B 681085870 681089569 3699 False 457.000000 645 84.44780 1009 5252 5 chr6B.!!$F2 4243
7 TraesCS3A01G301100 chr6B 681413297 681416506 3209 False 441.250000 590 84.65500 1351 5252 4 chr6B.!!$F3 3901
8 TraesCS3A01G301100 chr6A 595182882 595185840 2958 False 459.750000 617 85.30650 1021 4618 4 chr6A.!!$F1 3597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 313 0.514691 GAAGCAGCACGACCTTTGAG 59.485 55.000 0.00 0.0 0.00 3.02 F
1116 3767 0.613012 GCCATGGGAGCAGAAGGTTT 60.613 55.000 15.13 0.0 0.00 3.27 F
2095 5875 0.995024 AATGTGAAGGACCTCAGGGG 59.005 55.000 0.00 0.0 41.89 4.79 F
3736 7620 1.036707 GACTCCTCCGCTAGAGCATT 58.963 55.000 1.89 0.0 41.74 3.56 F
3870 7765 1.388768 TGCGATTTTACTTCTCGTGCG 59.611 47.619 0.00 0.0 34.96 5.34 F
5275 9378 0.877213 GCTGCAACACAAGGCCAAAG 60.877 55.000 5.01 0.0 0.00 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 4787 0.454600 CCATTCATGAGGCAGCACAC 59.545 55.000 0.00 0.0 0.00 3.82 R
2680 6496 0.254462 TGGTGGCGATATTCTTGGCA 59.746 50.000 0.00 0.0 41.35 4.92 R
4053 7950 0.036388 GCTGTTTCCCCGACTCATCA 60.036 55.000 0.00 0.0 0.00 3.07 R
5256 9358 0.877213 CTTTGGCCTTGTGTTGCAGC 60.877 55.000 3.32 0.0 0.00 5.25 R
5354 9457 1.002659 CAACTACGGGTCCACATTCCA 59.997 52.381 0.00 0.0 0.00 3.53 R
6122 10488 0.810648 TCATTCTTGGCCGAATGCAC 59.189 50.000 22.01 0.0 46.15 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 313 0.514691 GAAGCAGCACGACCTTTGAG 59.485 55.000 0.00 0.00 0.00 3.02
134 328 3.555139 CCTTTGAGCTGTCGATCTGAATC 59.445 47.826 0.00 0.00 0.00 2.52
191 385 1.188863 ACATTTGCATCCTTGGCTCC 58.811 50.000 0.00 0.00 0.00 4.70
192 386 1.187974 CATTTGCATCCTTGGCTCCA 58.812 50.000 0.00 0.00 0.00 3.86
219 413 5.582689 AATATTGAGGTTTACAAGGCTGC 57.417 39.130 0.00 0.00 0.00 5.25
297 492 8.862550 ATAGAGTTTTGCTTCTTTGAACAAAG 57.137 30.769 17.80 17.80 46.82 2.77
316 511 9.508567 GAACAAAGGCATTTCTAATTGACTATC 57.491 33.333 0.00 0.00 28.79 2.08
365 2956 8.925161 TTGACTAGCAATACCATTTTAAATGC 57.075 30.769 11.82 1.68 0.00 3.56
395 2986 7.584987 ACTGAAAACCTGAAAAATCGTATCTG 58.415 34.615 0.00 0.00 0.00 2.90
494 3086 8.154203 TCAAAGTTACATCTTGAAGACCATGTA 58.846 33.333 0.00 0.00 31.83 2.29
509 3101 6.180472 AGACCATGTAGATTTCCGAAATGTT 58.820 36.000 11.15 2.50 0.00 2.71
529 3125 8.553459 AATGTTACTTATTCTGAACTGGAGTG 57.447 34.615 0.00 0.00 0.00 3.51
538 3134 5.801531 TCTGAACTGGAGTGCTAGTAAAA 57.198 39.130 0.00 0.00 34.42 1.52
553 3149 6.318648 TGCTAGTAAAATAGATTTGGTGCAGG 59.681 38.462 0.00 0.00 32.27 4.85
556 3152 6.721318 AGTAAAATAGATTTGGTGCAGGAGA 58.279 36.000 0.00 0.00 32.27 3.71
557 3153 5.904362 AAAATAGATTTGGTGCAGGAGAC 57.096 39.130 0.00 0.00 0.00 3.36
558 3154 4.574674 AATAGATTTGGTGCAGGAGACA 57.425 40.909 0.00 0.00 0.00 3.41
559 3155 2.191128 AGATTTGGTGCAGGAGACAC 57.809 50.000 0.00 0.00 37.31 3.67
560 3156 1.421268 AGATTTGGTGCAGGAGACACA 59.579 47.619 0.00 0.00 39.87 3.72
562 3158 2.363306 TTTGGTGCAGGAGACACAAT 57.637 45.000 0.00 0.00 39.87 2.71
563 3159 2.363306 TTGGTGCAGGAGACACAATT 57.637 45.000 0.00 0.00 39.87 2.32
564 3160 2.363306 TGGTGCAGGAGACACAATTT 57.637 45.000 0.00 0.00 39.87 1.82
565 3161 2.229792 TGGTGCAGGAGACACAATTTC 58.770 47.619 0.00 0.00 39.87 2.17
566 3162 1.541588 GGTGCAGGAGACACAATTTCC 59.458 52.381 0.00 0.00 39.87 3.13
586 3192 5.129368 TCCTAATTAAGGGCTTCTGCAAT 57.871 39.130 0.00 0.00 46.55 3.56
596 3202 1.666888 GCTTCTGCAATTTGTGACGGG 60.667 52.381 0.00 0.00 39.41 5.28
609 3215 1.134699 GTGACGGGATGCATCTTGAGA 60.135 52.381 25.28 5.51 0.00 3.27
741 3347 1.672145 GGTACCGCTCTGGACAAGAAC 60.672 57.143 0.00 0.00 42.00 3.01
777 3383 2.875296 AGCTCTGAGTGGCCTATAGAG 58.125 52.381 17.15 17.15 36.17 2.43
793 3399 1.963985 AGAGATTTGAGGGACCAGCT 58.036 50.000 0.00 0.00 0.00 4.24
884 3521 3.641437 AACACCACCATTCATGTTTCG 57.359 42.857 0.00 0.00 31.27 3.46
886 3523 0.887933 ACCACCATTCATGTTTCGGC 59.112 50.000 0.00 0.00 0.00 5.54
955 3599 2.325583 TCTGTCTTTGCTCGTTTGGT 57.674 45.000 0.00 0.00 0.00 3.67
1026 3670 4.013050 AGAGCTTACAAAAGGATGAAGCC 58.987 43.478 0.00 0.00 42.79 4.35
1116 3767 0.613012 GCCATGGGAGCAGAAGGTTT 60.613 55.000 15.13 0.00 0.00 3.27
1363 4179 5.072741 AGTCTTGTGCCAAACTGAATATGT 58.927 37.500 0.00 0.00 0.00 2.29
1514 4330 7.499895 GTGGGGTTATACTGGAATATTCGAAAA 59.500 37.037 0.00 0.00 0.00 2.29
1518 4334 9.503399 GGTTATACTGGAATATTCGAAAAGGAT 57.497 33.333 0.00 8.63 0.00 3.24
1686 4595 2.684881 CCATTTCTGCATACCAGGTGTC 59.315 50.000 0.76 0.00 42.05 3.67
1848 4757 1.282157 CCCCTTGCTAGCTTACCAACT 59.718 52.381 17.23 0.00 0.00 3.16
2028 5786 2.160205 GTGTTAAAGAACAGGGGCCTC 58.840 52.381 0.84 0.00 46.20 4.70
2048 5828 3.332187 CTCCTTCCTTCCTTCCTTCCTTT 59.668 47.826 0.00 0.00 0.00 3.11
2095 5875 0.995024 AATGTGAAGGACCTCAGGGG 59.005 55.000 0.00 0.00 41.89 4.79
2135 5915 5.147162 CGCTTCATTGAAGTTTAAGGTGTC 58.853 41.667 23.66 5.95 41.27 3.67
2251 6043 8.934023 AAATAGTCAACTTTATCACCTGGAAA 57.066 30.769 0.00 0.00 0.00 3.13
2285 6077 1.405872 GCATGCCATTTGATCCCTCA 58.594 50.000 6.36 0.00 0.00 3.86
2323 6122 2.677914 TCACCTCACTTCTTCACCAGA 58.322 47.619 0.00 0.00 0.00 3.86
2358 6157 5.459536 TCTATCAGCTGAGATTGCGTATT 57.540 39.130 22.96 3.39 35.28 1.89
2423 6222 2.759795 GCTCCTCAGCACCCCTTT 59.240 61.111 0.00 0.00 46.06 3.11
2593 6409 1.806542 GTCATTGACCTGACGCATGTT 59.193 47.619 5.44 0.00 36.50 2.71
2649 6465 6.837048 TCATGTAGGTACTGTAAGCTTCCATA 59.163 38.462 0.00 0.00 41.52 2.74
2650 6466 6.461110 TGTAGGTACTGTAAGCTTCCATAC 57.539 41.667 0.00 2.93 41.52 2.39
2651 6467 5.953548 TGTAGGTACTGTAAGCTTCCATACA 59.046 40.000 0.00 0.03 41.52 2.29
2680 6496 7.677745 AGCAGGAGTGTATATAGGAATGATCTT 59.322 37.037 0.00 0.00 0.00 2.40
2789 6617 4.753107 TCATTGGTCAGGTTCGTAAAACTC 59.247 41.667 0.00 0.00 26.60 3.01
2837 6669 9.605955 TGTGTTCATCGATACTTTGTTTAAATG 57.394 29.630 0.00 0.00 0.00 2.32
2838 6670 9.607285 GTGTTCATCGATACTTTGTTTAAATGT 57.393 29.630 0.00 0.00 0.00 2.71
2839 6671 9.820229 TGTTCATCGATACTTTGTTTAAATGTC 57.180 29.630 0.00 0.00 0.00 3.06
2840 6672 9.274065 GTTCATCGATACTTTGTTTAAATGTCC 57.726 33.333 0.00 0.00 0.00 4.02
2841 6673 7.981142 TCATCGATACTTTGTTTAAATGTCCC 58.019 34.615 0.00 0.00 0.00 4.46
2842 6674 7.827236 TCATCGATACTTTGTTTAAATGTCCCT 59.173 33.333 0.00 0.00 0.00 4.20
2843 6675 7.605410 TCGATACTTTGTTTAAATGTCCCTC 57.395 36.000 0.00 0.00 0.00 4.30
2844 6676 6.596497 TCGATACTTTGTTTAAATGTCCCTCC 59.404 38.462 0.00 0.00 0.00 4.30
2845 6677 6.456449 CGATACTTTGTTTAAATGTCCCTCCG 60.456 42.308 0.00 0.00 0.00 4.63
2846 6678 4.466827 ACTTTGTTTAAATGTCCCTCCGT 58.533 39.130 0.00 0.00 0.00 4.69
2847 6679 4.891168 ACTTTGTTTAAATGTCCCTCCGTT 59.109 37.500 0.00 0.00 0.00 4.44
2848 6680 5.009310 ACTTTGTTTAAATGTCCCTCCGTTC 59.991 40.000 0.00 0.00 0.00 3.95
2849 6681 3.414269 TGTTTAAATGTCCCTCCGTTCC 58.586 45.455 0.00 0.00 0.00 3.62
2850 6682 3.073356 TGTTTAAATGTCCCTCCGTTCCT 59.927 43.478 0.00 0.00 0.00 3.36
2851 6683 4.286549 TGTTTAAATGTCCCTCCGTTCCTA 59.713 41.667 0.00 0.00 0.00 2.94
2852 6684 5.221884 TGTTTAAATGTCCCTCCGTTCCTAA 60.222 40.000 0.00 0.00 0.00 2.69
2853 6685 5.502089 TTAAATGTCCCTCCGTTCCTAAA 57.498 39.130 0.00 0.00 0.00 1.85
2854 6686 4.586306 AAATGTCCCTCCGTTCCTAAAT 57.414 40.909 0.00 0.00 0.00 1.40
2855 6687 5.703730 AAATGTCCCTCCGTTCCTAAATA 57.296 39.130 0.00 0.00 0.00 1.40
2856 6688 5.906772 AATGTCCCTCCGTTCCTAAATAT 57.093 39.130 0.00 0.00 0.00 1.28
2857 6689 7.383156 AAATGTCCCTCCGTTCCTAAATATA 57.617 36.000 0.00 0.00 0.00 0.86
2858 6690 7.383156 AATGTCCCTCCGTTCCTAAATATAA 57.617 36.000 0.00 0.00 0.00 0.98
2859 6691 6.415206 TGTCCCTCCGTTCCTAAATATAAG 57.585 41.667 0.00 0.00 0.00 1.73
2860 6692 5.901276 TGTCCCTCCGTTCCTAAATATAAGT 59.099 40.000 0.00 0.00 0.00 2.24
2861 6693 6.041296 TGTCCCTCCGTTCCTAAATATAAGTC 59.959 42.308 0.00 0.00 0.00 3.01
2862 6694 6.267242 GTCCCTCCGTTCCTAAATATAAGTCT 59.733 42.308 0.00 0.00 0.00 3.24
2863 6695 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2864 6696 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2865 6697 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2866 6698 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2881 6713 6.428385 AGTCTTTTTAGAGATTCCAATGCG 57.572 37.500 0.00 0.00 0.00 4.73
2882 6714 5.355350 AGTCTTTTTAGAGATTCCAATGCGG 59.645 40.000 0.00 0.00 0.00 5.69
2883 6715 5.354234 GTCTTTTTAGAGATTCCAATGCGGA 59.646 40.000 0.00 0.00 44.40 5.54
2884 6716 5.354234 TCTTTTTAGAGATTCCAATGCGGAC 59.646 40.000 0.00 0.00 46.36 4.79
2885 6717 4.487714 TTTAGAGATTCCAATGCGGACT 57.512 40.909 0.00 0.00 46.36 3.85
2886 6718 5.607939 TTTAGAGATTCCAATGCGGACTA 57.392 39.130 0.00 0.00 46.36 2.59
2887 6719 3.460857 AGAGATTCCAATGCGGACTAC 57.539 47.619 0.00 0.00 46.36 2.73
2888 6720 2.766263 AGAGATTCCAATGCGGACTACA 59.234 45.455 0.00 0.00 46.36 2.74
2889 6721 3.389329 AGAGATTCCAATGCGGACTACAT 59.611 43.478 0.00 0.00 46.36 2.29
2890 6722 4.588951 AGAGATTCCAATGCGGACTACATA 59.411 41.667 0.00 0.00 46.36 2.29
2891 6723 5.247110 AGAGATTCCAATGCGGACTACATAT 59.753 40.000 0.00 0.00 46.36 1.78
2892 6724 5.240891 AGATTCCAATGCGGACTACATATG 58.759 41.667 0.00 0.00 46.36 1.78
2893 6725 3.401033 TCCAATGCGGACTACATATGG 57.599 47.619 7.80 0.00 39.64 2.74
2894 6726 2.969262 TCCAATGCGGACTACATATGGA 59.031 45.455 7.80 0.00 39.64 3.41
2895 6727 3.006859 TCCAATGCGGACTACATATGGAG 59.993 47.826 13.77 13.77 39.64 3.86
2896 6728 2.738846 CAATGCGGACTACATATGGAGC 59.261 50.000 15.30 7.75 0.00 4.70
2897 6729 1.408969 TGCGGACTACATATGGAGCA 58.591 50.000 15.30 5.14 0.00 4.26
2898 6730 1.760029 TGCGGACTACATATGGAGCAA 59.240 47.619 15.30 0.00 0.00 3.91
2899 6731 2.169561 TGCGGACTACATATGGAGCAAA 59.830 45.455 15.30 0.00 0.00 3.68
2900 6732 3.202906 GCGGACTACATATGGAGCAAAA 58.797 45.455 15.30 0.00 0.00 2.44
2901 6733 3.815401 GCGGACTACATATGGAGCAAAAT 59.185 43.478 15.30 0.00 0.00 1.82
2902 6734 4.319766 GCGGACTACATATGGAGCAAAATG 60.320 45.833 15.30 0.84 0.00 2.32
2903 6735 5.056480 CGGACTACATATGGAGCAAAATGA 58.944 41.667 15.30 0.00 0.00 2.57
2904 6736 5.178252 CGGACTACATATGGAGCAAAATGAG 59.822 44.000 15.30 0.00 0.00 2.90
2905 6737 6.058183 GGACTACATATGGAGCAAAATGAGT 58.942 40.000 15.30 0.00 0.00 3.41
2906 6738 6.017605 GGACTACATATGGAGCAAAATGAGTG 60.018 42.308 15.30 0.00 0.00 3.51
2907 6739 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
2908 6740 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
2909 6741 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
2910 6742 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
2911 6743 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
2912 6744 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
2913 6745 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
2914 6746 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
2915 6747 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
2949 6781 8.703604 ATGTCTATATACATCCGTATGCAAAC 57.296 34.615 0.00 0.00 38.79 2.93
2950 6782 7.094631 TGTCTATATACATCCGTATGCAAACC 58.905 38.462 0.00 0.00 38.79 3.27
2951 6783 7.039293 TGTCTATATACATCCGTATGCAAACCT 60.039 37.037 0.00 0.00 38.79 3.50
2952 6784 7.817962 GTCTATATACATCCGTATGCAAACCTT 59.182 37.037 0.00 0.00 38.79 3.50
2953 6785 9.027202 TCTATATACATCCGTATGCAAACCTTA 57.973 33.333 0.00 0.00 38.79 2.69
2954 6786 9.817809 CTATATACATCCGTATGCAAACCTTAT 57.182 33.333 0.00 0.00 38.79 1.73
2956 6788 5.499139 ACATCCGTATGCAAACCTTATTG 57.501 39.130 0.00 0.00 36.50 1.90
2957 6789 5.189928 ACATCCGTATGCAAACCTTATTGA 58.810 37.500 0.00 0.00 36.50 2.57
2958 6790 5.650266 ACATCCGTATGCAAACCTTATTGAA 59.350 36.000 0.00 0.00 36.50 2.69
2959 6791 6.151985 ACATCCGTATGCAAACCTTATTGAAA 59.848 34.615 0.00 0.00 36.50 2.69
2960 6792 6.767524 TCCGTATGCAAACCTTATTGAAAT 57.232 33.333 0.00 0.00 31.84 2.17
2961 6793 6.791303 TCCGTATGCAAACCTTATTGAAATC 58.209 36.000 0.00 0.00 31.84 2.17
2962 6794 6.601613 TCCGTATGCAAACCTTATTGAAATCT 59.398 34.615 0.00 0.00 31.84 2.40
2963 6795 6.912591 CCGTATGCAAACCTTATTGAAATCTC 59.087 38.462 0.00 0.00 31.84 2.75
2964 6796 7.201732 CCGTATGCAAACCTTATTGAAATCTCT 60.202 37.037 0.00 0.00 31.84 3.10
2965 6797 8.826710 CGTATGCAAACCTTATTGAAATCTCTA 58.173 33.333 0.00 0.00 31.84 2.43
2988 6820 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
2989 6821 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
2990 6822 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
2991 6823 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2992 6824 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2993 6825 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3437 7304 5.303971 CCAGATCCATTATGTGAGAGAACC 58.696 45.833 0.00 0.00 30.31 3.62
3516 7390 1.964552 GCATCTCCATAGCTGCTTGT 58.035 50.000 7.79 0.00 40.84 3.16
3565 7447 6.210385 GGCAGAGATAAACAGATGGAGATAGA 59.790 42.308 0.00 0.00 0.00 1.98
3606 7488 3.819564 TGGATCAAGCTGTATTACGCT 57.180 42.857 0.00 7.16 38.30 5.07
3607 7489 4.929819 TGGATCAAGCTGTATTACGCTA 57.070 40.909 11.64 1.52 34.96 4.26
3608 7490 4.617959 TGGATCAAGCTGTATTACGCTAC 58.382 43.478 11.64 6.27 34.96 3.58
3609 7491 3.669122 GGATCAAGCTGTATTACGCTACG 59.331 47.826 11.64 7.92 34.96 3.51
3610 7492 2.456989 TCAAGCTGTATTACGCTACGC 58.543 47.619 11.64 0.65 34.96 4.42
3611 7493 1.521423 CAAGCTGTATTACGCTACGCC 59.479 52.381 11.64 0.00 34.96 5.68
3668 7552 2.027073 TGCGTCGTGTCTTCATGGC 61.027 57.895 0.00 0.00 32.46 4.40
3669 7553 2.027073 GCGTCGTGTCTTCATGGCA 61.027 57.895 0.00 0.00 35.17 4.92
3670 7554 1.361668 GCGTCGTGTCTTCATGGCAT 61.362 55.000 0.00 0.00 35.17 4.40
3731 7615 1.490910 TGATCAGACTCCTCCGCTAGA 59.509 52.381 0.00 0.00 0.00 2.43
3736 7620 1.036707 GACTCCTCCGCTAGAGCATT 58.963 55.000 1.89 0.00 41.74 3.56
3790 7683 6.578020 TCGTACCTAATAAATTGCAACTCG 57.422 37.500 0.00 0.00 0.00 4.18
3852 7747 7.148086 TGGTTAGATAACAAAATCTGTCCATGC 60.148 37.037 5.19 0.00 37.23 4.06
3855 7750 5.824624 AGATAACAAAATCTGTCCATGCGAT 59.175 36.000 0.00 0.00 37.23 4.58
3870 7765 1.388768 TGCGATTTTACTTCTCGTGCG 59.611 47.619 0.00 0.00 34.96 5.34
3966 7863 1.807814 ACTTGACTCCTGTTGGTCCT 58.192 50.000 0.00 0.00 34.23 3.85
4041 7938 7.042051 CGTTTCTCAGAATGGTTAGTCTTTGAA 60.042 37.037 0.00 0.00 36.16 2.69
4053 7950 3.825328 AGTCTTTGAAGGCATCAGTGTT 58.175 40.909 0.00 0.00 39.77 3.32
4110 8007 1.827315 TTGCGTACAAGCGTGCAGTC 61.827 55.000 0.00 0.00 38.75 3.51
4169 8066 1.765314 CAAGGAGCAGGTAGGCAGTAT 59.235 52.381 0.00 0.00 35.83 2.12
4403 8371 9.150348 ACAAACTGTTTTCTGGACATTTTAAAG 57.850 29.630 2.41 0.00 31.39 1.85
4562 8568 4.081642 TCCCATTGACAACTACTAGCAGAC 60.082 45.833 0.00 0.00 0.00 3.51
4582 8593 7.977293 AGCAGACATATGTGTGTACGTTTTATA 59.023 33.333 27.92 0.00 40.91 0.98
4645 8663 6.108015 CCAAAAGCATTGTAAATATGTGCCT 58.892 36.000 2.18 0.00 36.50 4.75
4693 8711 8.247562 GTCTTATCAGTAATAGGCAGATGTAGG 58.752 40.741 0.00 0.00 0.00 3.18
4752 8776 6.959639 TTCTCCACTTGCTTAAATTGTCTT 57.040 33.333 0.00 0.00 0.00 3.01
4906 8955 4.338400 ACTTCCAGAGGTTTGCAAAGTAAC 59.662 41.667 13.26 0.58 0.00 2.50
4925 8974 3.988379 ACGCACACAGACAAATTGAAT 57.012 38.095 0.00 0.00 0.00 2.57
4948 8998 9.173939 GAATTTTCATTGTGGACATATCGAATC 57.826 33.333 0.00 0.00 0.00 2.52
5123 9218 9.933723 ATTCTTAGGCATTTTGAATATTATGGC 57.066 29.630 12.35 12.35 42.08 4.40
5223 9325 4.827284 GGACCAAAATTGAGAAGACTTCCA 59.173 41.667 11.67 6.90 0.00 3.53
5258 9360 2.111878 GTGCAGTGGACACCTGCT 59.888 61.111 10.26 0.00 43.74 4.24
5259 9361 2.111669 TGCAGTGGACACCTGCTG 59.888 61.111 19.71 8.39 43.74 4.41
5260 9362 3.360340 GCAGTGGACACCTGCTGC 61.360 66.667 16.46 16.46 42.13 5.25
5269 9372 1.361271 CACCTGCTGCAACACAAGG 59.639 57.895 3.02 2.54 0.00 3.61
5275 9378 0.877213 GCTGCAACACAAGGCCAAAG 60.877 55.000 5.01 0.00 0.00 2.77
5344 9447 8.084985 TGGTATTCTCACAACCATCTATGTAA 57.915 34.615 0.00 0.00 38.36 2.41
5345 9448 8.713971 TGGTATTCTCACAACCATCTATGTAAT 58.286 33.333 0.00 0.00 38.36 1.89
5396 9499 6.844097 TGTAATATGGGGTTTCTTGTTTCC 57.156 37.500 0.00 0.00 0.00 3.13
5397 9500 6.557568 TGTAATATGGGGTTTCTTGTTTCCT 58.442 36.000 0.00 0.00 0.00 3.36
5401 9504 3.230134 TGGGGTTTCTTGTTTCCTGATG 58.770 45.455 0.00 0.00 0.00 3.07
5517 9645 5.594724 ATTGAAATTGAAATTGTGCCACG 57.405 34.783 0.00 0.00 0.00 4.94
5520 9648 2.818130 ATTGAAATTGTGCCACGCTT 57.182 40.000 0.00 0.00 0.00 4.68
5557 9689 4.141597 GCTCTTCTAGCCCTTAGGAAATGT 60.142 45.833 0.00 0.00 46.25 2.71
5561 9693 4.843728 TCTAGCCCTTAGGAAATGTGTTG 58.156 43.478 0.00 0.00 33.47 3.33
5563 9695 3.157087 AGCCCTTAGGAAATGTGTTGTG 58.843 45.455 0.00 0.00 33.47 3.33
5569 9701 6.208644 CCTTAGGAAATGTGTTGTGAACTTG 58.791 40.000 0.00 0.00 0.00 3.16
5571 9703 5.913137 AGGAAATGTGTTGTGAACTTGAA 57.087 34.783 0.00 0.00 0.00 2.69
5602 9734 1.357420 TGGCAAGTGTACATGGGGAAT 59.643 47.619 0.00 0.00 0.00 3.01
5603 9735 2.225242 TGGCAAGTGTACATGGGGAATT 60.225 45.455 0.00 0.00 0.00 2.17
5604 9736 2.831526 GGCAAGTGTACATGGGGAATTT 59.168 45.455 0.00 0.00 0.00 1.82
5605 9737 3.260632 GGCAAGTGTACATGGGGAATTTT 59.739 43.478 0.00 0.00 0.00 1.82
5606 9738 4.262851 GGCAAGTGTACATGGGGAATTTTT 60.263 41.667 0.00 0.00 0.00 1.94
5648 9786 5.350365 TGAGAAGTTACATTACAATCACGGC 59.650 40.000 0.00 0.00 0.00 5.68
5717 9855 8.474710 AGTAGGTTGAGACAAGTTTAGAGTTA 57.525 34.615 0.00 0.00 0.00 2.24
5782 9920 1.125093 TCTGAAGTTGGGAGCGGGAA 61.125 55.000 0.00 0.00 0.00 3.97
5785 9923 0.250770 GAAGTTGGGAGCGGGAAGTT 60.251 55.000 0.00 0.00 0.00 2.66
5789 9958 2.359975 GGGAGCGGGAAGTTGTGG 60.360 66.667 0.00 0.00 0.00 4.17
5812 9981 7.560262 GTGGCCCTATCCTTATTTCTTTTAACT 59.440 37.037 0.00 0.00 0.00 2.24
5950 10153 6.103330 GTGATTCCTGAAAGAAGAGGAGTAC 58.897 44.000 0.00 0.00 39.59 2.73
6021 10224 2.145397 TGAATACTGTCGCTCCCTCT 57.855 50.000 0.00 0.00 0.00 3.69
6049 10252 6.931840 ACAGAACCAGAGAGAAGAAAACATAC 59.068 38.462 0.00 0.00 0.00 2.39
6051 10254 7.605691 CAGAACCAGAGAGAAGAAAACATACAT 59.394 37.037 0.00 0.00 0.00 2.29
6052 10255 8.816894 AGAACCAGAGAGAAGAAAACATACATA 58.183 33.333 0.00 0.00 0.00 2.29
6122 10488 1.094785 CCAACAAGGCCGGTCTATTG 58.905 55.000 20.87 20.87 0.00 1.90
6166 10532 5.338559 CGTTTCCAACTTAGCATTACAAACG 59.661 40.000 0.00 0.00 38.07 3.60
6211 10577 6.237942 CCACATAAGAAATGACACGACAGATC 60.238 42.308 0.00 0.00 0.00 2.75
6212 10578 5.812642 ACATAAGAAATGACACGACAGATCC 59.187 40.000 0.00 0.00 0.00 3.36
6213 10579 3.961480 AGAAATGACACGACAGATCCA 57.039 42.857 0.00 0.00 0.00 3.41
6215 10581 5.598416 AGAAATGACACGACAGATCCATA 57.402 39.130 0.00 0.00 0.00 2.74
6216 10582 5.595885 AGAAATGACACGACAGATCCATAG 58.404 41.667 0.00 0.00 0.00 2.23
6217 10583 5.127845 AGAAATGACACGACAGATCCATAGT 59.872 40.000 0.00 0.00 0.00 2.12
6219 10585 4.110036 TGACACGACAGATCCATAGTTG 57.890 45.455 0.00 0.00 0.00 3.16
6220 10586 2.860735 GACACGACAGATCCATAGTTGC 59.139 50.000 0.00 0.00 0.00 4.17
6221 10587 2.233676 ACACGACAGATCCATAGTTGCA 59.766 45.455 0.00 0.00 0.00 4.08
6222 10588 3.118629 ACACGACAGATCCATAGTTGCAT 60.119 43.478 0.00 0.00 0.00 3.96
6223 10589 3.492383 CACGACAGATCCATAGTTGCATC 59.508 47.826 0.00 0.00 0.00 3.91
6224 10590 3.132824 ACGACAGATCCATAGTTGCATCA 59.867 43.478 0.00 0.00 0.00 3.07
6225 10591 4.202295 ACGACAGATCCATAGTTGCATCAT 60.202 41.667 0.00 0.00 0.00 2.45
6226 10592 4.151867 CGACAGATCCATAGTTGCATCATG 59.848 45.833 0.00 0.00 0.00 3.07
6227 10593 5.045012 ACAGATCCATAGTTGCATCATGT 57.955 39.130 0.00 0.00 0.00 3.21
6228 10594 6.178607 ACAGATCCATAGTTGCATCATGTA 57.821 37.500 0.00 0.00 0.00 2.29
6333 10699 4.157105 AGGACACAACAAACAAACAGGTAC 59.843 41.667 0.00 0.00 0.00 3.34
6336 10702 6.431198 ACACAACAAACAAACAGGTACTAG 57.569 37.500 0.00 0.00 36.02 2.57
6337 10703 5.941647 ACACAACAAACAAACAGGTACTAGT 59.058 36.000 0.00 0.00 36.02 2.57
6338 10704 7.104939 ACACAACAAACAAACAGGTACTAGTA 58.895 34.615 0.00 0.00 36.02 1.82
6339 10705 7.064966 ACACAACAAACAAACAGGTACTAGTAC 59.935 37.037 22.53 22.53 36.02 2.73
6346 10712 6.823497 ACAAACAGGTACTAGTACACAACAT 58.177 36.000 29.38 11.66 36.02 2.71
6385 10753 0.869454 CGACTAGTAGCAGCAGCAGC 60.869 60.000 3.17 0.46 45.49 5.25
6409 10777 6.453943 CAGTGTATGTATGCTAGCTGAATCT 58.546 40.000 17.23 0.00 0.00 2.40
6410 10778 6.365518 CAGTGTATGTATGCTAGCTGAATCTG 59.634 42.308 17.23 8.82 0.00 2.90
6411 10779 6.266330 AGTGTATGTATGCTAGCTGAATCTGA 59.734 38.462 17.23 0.00 0.00 3.27
6415 10783 4.753610 TGTATGCTAGCTGAATCTGAATGC 59.246 41.667 17.23 1.79 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 306 2.662006 TCAGATCGACAGCTCAAAGG 57.338 50.000 0.00 0.00 0.00 3.11
134 328 1.522258 GCAACAAAAGTCCATTGCACG 59.478 47.619 3.06 0.00 45.38 5.34
191 385 8.686334 AGCCTTGTAAACCTCAATATTACAATG 58.314 33.333 9.85 8.80 44.16 2.82
192 386 8.686334 CAGCCTTGTAAACCTCAATATTACAAT 58.314 33.333 9.85 0.00 44.16 2.71
219 413 5.177511 TGCTCATTTTTGTTAGAGTGACGAG 59.822 40.000 0.00 0.00 0.00 4.18
297 492 8.668510 TGAAGAGATAGTCAATTAGAAATGCC 57.331 34.615 0.00 0.00 0.00 4.40
346 541 8.971073 AGTCTAAGCATTTAAAATGGTATTGCT 58.029 29.630 4.73 4.73 40.43 3.91
365 2956 7.639945 ACGATTTTTCAGGTTTTCAGTCTAAG 58.360 34.615 0.00 0.00 0.00 2.18
395 2986 8.825667 TGGAAACCTTTTTAAGACAAATATGC 57.174 30.769 0.00 0.00 0.00 3.14
494 3086 9.667107 TCAGAATAAGTAACATTTCGGAAATCT 57.333 29.630 12.86 4.99 0.00 2.40
509 3101 6.663953 ACTAGCACTCCAGTTCAGAATAAGTA 59.336 38.462 0.00 0.00 0.00 2.24
529 3125 6.542370 TCCTGCACCAAATCTATTTTACTAGC 59.458 38.462 0.00 0.00 0.00 3.42
538 3134 3.264193 TGTGTCTCCTGCACCAAATCTAT 59.736 43.478 0.00 0.00 36.11 1.98
558 3154 8.455899 TGCAGAAGCCCTTAATTAGGAAATTGT 61.456 37.037 0.00 0.00 44.43 2.71
559 3155 6.127366 TGCAGAAGCCCTTAATTAGGAAATTG 60.127 38.462 0.00 0.00 44.43 2.32
560 3156 5.957774 TGCAGAAGCCCTTAATTAGGAAATT 59.042 36.000 0.00 0.00 44.43 1.82
562 3158 4.929479 TGCAGAAGCCCTTAATTAGGAAA 58.071 39.130 0.00 0.00 44.43 3.13
563 3159 4.584638 TGCAGAAGCCCTTAATTAGGAA 57.415 40.909 0.00 0.00 44.43 3.36
564 3160 4.584638 TTGCAGAAGCCCTTAATTAGGA 57.415 40.909 0.00 0.00 44.43 2.94
565 3161 5.859205 AATTGCAGAAGCCCTTAATTAGG 57.141 39.130 0.00 0.00 44.33 2.69
566 3162 6.532657 CACAAATTGCAGAAGCCCTTAATTAG 59.467 38.462 0.00 0.00 41.13 1.73
586 3192 1.811965 CAAGATGCATCCCGTCACAAA 59.188 47.619 23.06 0.00 31.60 2.83
730 3336 8.503458 AGAAAATGAGATATGTTCTTGTCCAG 57.497 34.615 0.00 0.00 33.74 3.86
741 3347 8.980610 CACTCAGAGCTAAGAAAATGAGATATG 58.019 37.037 6.98 0.00 38.02 1.78
777 3383 0.620556 TCCAGCTGGTCCCTCAAATC 59.379 55.000 31.58 0.00 36.34 2.17
793 3399 5.298276 GTCACCATCAAGTAACAGTTTTCCA 59.702 40.000 0.00 0.00 0.00 3.53
875 3512 0.237235 GAAAGCACGCCGAAACATGA 59.763 50.000 0.00 0.00 0.00 3.07
876 3513 0.040514 TGAAAGCACGCCGAAACATG 60.041 50.000 0.00 0.00 0.00 3.21
877 3514 0.665835 TTGAAAGCACGCCGAAACAT 59.334 45.000 0.00 0.00 0.00 2.71
878 3515 0.452184 TTTGAAAGCACGCCGAAACA 59.548 45.000 0.00 0.00 0.00 2.83
884 3521 0.598065 ATCCACTTTGAAAGCACGCC 59.402 50.000 4.57 0.00 0.00 5.68
886 3523 1.001487 TGCATCCACTTTGAAAGCACG 60.001 47.619 4.57 0.00 0.00 5.34
955 3599 7.297936 TCTACTTTTATGAGTCACACTGGAA 57.702 36.000 0.00 0.00 0.00 3.53
1026 3670 6.620678 CCATGTTTTGTTATGTACCTTCAGG 58.379 40.000 0.00 0.00 42.17 3.86
1363 4179 8.807118 ACTGAGATAATGAGTCTGTAGAAAACA 58.193 33.333 0.00 0.00 36.42 2.83
1514 4330 0.765510 GAACCCGCCTCCATTATCCT 59.234 55.000 0.00 0.00 0.00 3.24
1518 4334 2.092807 GGTTAAGAACCCGCCTCCATTA 60.093 50.000 0.00 0.00 46.12 1.90
1740 4649 7.289317 TCCCTGTCGTTCCATATATTAAGAAGT 59.711 37.037 0.00 0.00 0.00 3.01
1761 4670 5.412594 TGTCTCGATCAATTTTCTTTCCCTG 59.587 40.000 0.00 0.00 0.00 4.45
1848 4757 4.415881 TCCAAGTAAGCAGTTGTCAGAA 57.584 40.909 0.00 0.00 33.86 3.02
1878 4787 0.454600 CCATTCATGAGGCAGCACAC 59.545 55.000 0.00 0.00 0.00 3.82
1932 5682 7.147497 TGGAATTCTGAGCCACATAAGAAGATA 60.147 37.037 5.23 0.00 32.50 1.98
2028 5786 3.074538 TGAAAGGAAGGAAGGAAGGAAGG 59.925 47.826 0.00 0.00 0.00 3.46
2135 5915 1.341080 ATTTTCCAAGTGGTGCCTGG 58.659 50.000 0.00 0.00 36.34 4.45
2251 6043 2.364324 GGCATGCCAATGATGATTCAGT 59.636 45.455 32.08 0.00 35.67 3.41
2296 6088 5.763204 GGTGAAGAAGTGAGGTGAACAAATA 59.237 40.000 0.00 0.00 0.00 1.40
2323 6122 3.881688 AGCTGATAGATCGCTGCATTTTT 59.118 39.130 0.00 0.00 36.10 1.94
2358 6157 5.181811 CAGTGATGGAAACTTCTATGCAACA 59.818 40.000 0.00 0.00 35.62 3.33
2422 6221 9.120538 GGAAGCTAAGGAATGATATGTGTTTAA 57.879 33.333 0.00 0.00 0.00 1.52
2423 6222 8.271458 TGGAAGCTAAGGAATGATATGTGTTTA 58.729 33.333 0.00 0.00 0.00 2.01
2497 6308 2.622977 CCTGGCCTGCCACCTATTTAAA 60.623 50.000 6.80 0.00 41.89 1.52
2523 6334 5.092554 TCTTTGACTGTGTGGTTGTTAGA 57.907 39.130 0.00 0.00 0.00 2.10
2593 6409 1.065199 CCTTCTGGCTCATGGCTAACA 60.065 52.381 6.20 0.00 41.46 2.41
2649 6465 5.208890 TCCTATATACACTCCTGCTGTTGT 58.791 41.667 0.00 0.00 0.00 3.32
2650 6466 5.791336 TCCTATATACACTCCTGCTGTTG 57.209 43.478 0.00 0.00 0.00 3.33
2651 6467 6.554982 TCATTCCTATATACACTCCTGCTGTT 59.445 38.462 0.00 0.00 0.00 3.16
2680 6496 0.254462 TGGTGGCGATATTCTTGGCA 59.746 50.000 0.00 0.00 41.35 4.92
2769 6597 3.125316 CGAGTTTTACGAACCTGACCAA 58.875 45.455 0.00 0.00 0.00 3.67
2789 6617 3.937706 AGGACTTGAGATTTCAGATTGCG 59.062 43.478 0.00 0.00 34.15 4.85
2837 6669 6.267242 AGACTTATATTTAGGAACGGAGGGAC 59.733 42.308 0.00 0.00 0.00 4.46
2838 6670 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2839 6671 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2840 6672 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2855 6687 8.616076 CGCATTGGAATCTCTAAAAAGACTTAT 58.384 33.333 0.00 0.00 0.00 1.73
2856 6688 7.065803 CCGCATTGGAATCTCTAAAAAGACTTA 59.934 37.037 0.00 0.00 42.00 2.24
2857 6689 6.127897 CCGCATTGGAATCTCTAAAAAGACTT 60.128 38.462 0.00 0.00 42.00 3.01
2858 6690 5.355350 CCGCATTGGAATCTCTAAAAAGACT 59.645 40.000 0.00 0.00 42.00 3.24
2859 6691 5.354234 TCCGCATTGGAATCTCTAAAAAGAC 59.646 40.000 0.00 0.00 46.38 3.01
2860 6692 5.496556 TCCGCATTGGAATCTCTAAAAAGA 58.503 37.500 0.00 0.00 46.38 2.52
2861 6693 5.818136 TCCGCATTGGAATCTCTAAAAAG 57.182 39.130 0.00 0.00 46.38 2.27
2874 6706 3.329386 CTCCATATGTAGTCCGCATTGG 58.671 50.000 1.24 0.00 40.09 3.16
2875 6707 2.738846 GCTCCATATGTAGTCCGCATTG 59.261 50.000 1.24 0.00 0.00 2.82
2876 6708 2.368548 TGCTCCATATGTAGTCCGCATT 59.631 45.455 1.24 0.00 0.00 3.56
2877 6709 1.970640 TGCTCCATATGTAGTCCGCAT 59.029 47.619 1.24 0.00 0.00 4.73
2878 6710 1.408969 TGCTCCATATGTAGTCCGCA 58.591 50.000 1.24 0.00 0.00 5.69
2879 6711 2.526304 TTGCTCCATATGTAGTCCGC 57.474 50.000 1.24 0.00 0.00 5.54
2880 6712 5.056480 TCATTTTGCTCCATATGTAGTCCG 58.944 41.667 1.24 0.00 0.00 4.79
2881 6713 6.017605 CACTCATTTTGCTCCATATGTAGTCC 60.018 42.308 1.24 0.00 0.00 3.85
2882 6714 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
2883 6715 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
2884 6716 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
2885 6717 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
2886 6718 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
2887 6719 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
2888 6720 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
2889 6721 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
2890 6722 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
2891 6723 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
2892 6724 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2893 6725 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2923 6755 9.797556 GTTTGCATACGGATGTATATAGACATA 57.202 33.333 12.82 0.00 40.18 2.29
2924 6756 7.764443 GGTTTGCATACGGATGTATATAGACAT 59.236 37.037 12.70 12.70 42.82 3.06
2925 6757 7.039293 AGGTTTGCATACGGATGTATATAGACA 60.039 37.037 9.90 2.07 39.28 3.41
2926 6758 7.321153 AGGTTTGCATACGGATGTATATAGAC 58.679 38.462 9.90 0.00 39.28 2.59
2927 6759 7.476540 AGGTTTGCATACGGATGTATATAGA 57.523 36.000 9.90 0.00 39.28 1.98
2928 6760 9.817809 ATAAGGTTTGCATACGGATGTATATAG 57.182 33.333 9.90 0.00 39.28 1.31
2930 6762 8.946085 CAATAAGGTTTGCATACGGATGTATAT 58.054 33.333 9.90 0.00 39.28 0.86
2931 6763 8.151596 TCAATAAGGTTTGCATACGGATGTATA 58.848 33.333 9.90 0.00 39.28 1.47
2932 6764 6.995686 TCAATAAGGTTTGCATACGGATGTAT 59.004 34.615 9.90 0.00 42.03 2.29
2933 6765 6.350103 TCAATAAGGTTTGCATACGGATGTA 58.650 36.000 9.90 0.67 35.30 2.29
2934 6766 5.189928 TCAATAAGGTTTGCATACGGATGT 58.810 37.500 9.90 0.00 35.30 3.06
2935 6767 5.749596 TCAATAAGGTTTGCATACGGATG 57.250 39.130 2.22 2.22 36.02 3.51
2936 6768 6.767524 TTTCAATAAGGTTTGCATACGGAT 57.232 33.333 1.02 0.00 0.00 4.18
2937 6769 6.601613 AGATTTCAATAAGGTTTGCATACGGA 59.398 34.615 1.02 0.00 0.00 4.69
2938 6770 6.795399 AGATTTCAATAAGGTTTGCATACGG 58.205 36.000 1.02 0.00 0.00 4.02
2939 6771 7.697691 AGAGATTTCAATAAGGTTTGCATACG 58.302 34.615 1.02 0.00 0.00 3.06
2962 6794 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
2963 6795 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
2964 6796 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
2965 6797 7.174426 CCTCCGTTCCTAAATGTAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
2966 6798 6.653740 CCTCCGTTCCTAAATGTAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
2967 6799 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2968 6800 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2969 6801 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
2970 6802 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
2971 6803 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
2972 6804 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
2973 6805 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
2974 6806 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
2975 6807 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
2976 6808 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
2977 6809 5.484290 CCATATACTCCCTCCGTTCCTAAAT 59.516 44.000 0.00 0.00 0.00 1.40
2978 6810 4.836736 CCATATACTCCCTCCGTTCCTAAA 59.163 45.833 0.00 0.00 0.00 1.85
2979 6811 4.140853 ACCATATACTCCCTCCGTTCCTAA 60.141 45.833 0.00 0.00 0.00 2.69
2980 6812 3.400322 ACCATATACTCCCTCCGTTCCTA 59.600 47.826 0.00 0.00 0.00 2.94
2981 6813 2.179424 ACCATATACTCCCTCCGTTCCT 59.821 50.000 0.00 0.00 0.00 3.36
2982 6814 2.606378 ACCATATACTCCCTCCGTTCC 58.394 52.381 0.00 0.00 0.00 3.62
2983 6815 5.796424 TTAACCATATACTCCCTCCGTTC 57.204 43.478 0.00 0.00 0.00 3.95
2984 6816 6.758806 ATTTAACCATATACTCCCTCCGTT 57.241 37.500 0.00 0.00 0.00 4.44
2985 6817 7.243824 TCTATTTAACCATATACTCCCTCCGT 58.756 38.462 0.00 0.00 0.00 4.69
2986 6818 7.713734 TCTATTTAACCATATACTCCCTCCG 57.286 40.000 0.00 0.00 0.00 4.63
3324 7176 7.248437 ACCAGATGCGTTTAAATAAAAGCTAC 58.752 34.615 19.45 14.38 46.16 3.58
3331 7183 8.773645 CATGAGATACCAGATGCGTTTAAATAA 58.226 33.333 0.00 0.00 0.00 1.40
3332 7184 7.387673 CCATGAGATACCAGATGCGTTTAAATA 59.612 37.037 0.00 0.00 0.00 1.40
3333 7185 6.205464 CCATGAGATACCAGATGCGTTTAAAT 59.795 38.462 0.00 0.00 0.00 1.40
3334 7186 5.527214 CCATGAGATACCAGATGCGTTTAAA 59.473 40.000 0.00 0.00 0.00 1.52
3478 7345 2.172483 CTTCCTGCTACTGTGCCGGT 62.172 60.000 1.90 0.00 38.29 5.28
3480 7347 2.103042 GCTTCCTGCTACTGTGCCG 61.103 63.158 0.00 0.00 38.95 5.69
3516 7390 6.016024 CCCATCTGAATCTGACAAGTTTCAAA 60.016 38.462 0.00 0.00 40.13 2.69
3565 7447 9.228949 GATCCAATGAATACATCTTCTATGCTT 57.771 33.333 0.00 0.00 35.50 3.91
3649 7533 1.781555 CCATGAAGACACGACGCAC 59.218 57.895 0.00 0.00 0.00 5.34
3652 7536 1.078709 AATGCCATGAAGACACGACG 58.921 50.000 0.00 0.00 0.00 5.12
3657 7541 4.082081 CAGCCTAAAAATGCCATGAAGACA 60.082 41.667 0.00 0.00 0.00 3.41
3668 7552 5.100259 CACAGAAGCATCAGCCTAAAAATG 58.900 41.667 0.00 0.00 43.56 2.32
3669 7553 4.159135 CCACAGAAGCATCAGCCTAAAAAT 59.841 41.667 0.00 0.00 43.56 1.82
3670 7554 3.507233 CCACAGAAGCATCAGCCTAAAAA 59.493 43.478 0.00 0.00 43.56 1.94
3711 7595 1.490910 TCTAGCGGAGGAGTCTGATCA 59.509 52.381 0.00 0.00 0.00 2.92
3731 7615 5.711976 AGTGTGGTTAGAAATAAGCAATGCT 59.288 36.000 0.00 0.00 42.56 3.79
3736 7620 3.756434 GCCAGTGTGGTTAGAAATAAGCA 59.244 43.478 0.00 0.00 40.46 3.91
3790 7683 3.456280 TCCTGCAAAATTGTTGAACTGC 58.544 40.909 0.00 0.00 0.00 4.40
3852 7747 1.990563 ACCGCACGAGAAGTAAAATCG 59.009 47.619 0.00 0.00 42.04 3.34
3855 7750 0.863144 GCACCGCACGAGAAGTAAAA 59.137 50.000 0.00 0.00 0.00 1.52
3870 7765 5.904362 ATTAGTGGAATTTCAGAAGCACC 57.096 39.130 0.00 0.00 0.00 5.01
4053 7950 0.036388 GCTGTTTCCCCGACTCATCA 60.036 55.000 0.00 0.00 0.00 3.07
4095 7992 0.319555 TGAGGACTGCACGCTTGTAC 60.320 55.000 0.00 0.00 0.00 2.90
4169 8066 4.085357 ACTTGCAGGATGACAGTAAACA 57.915 40.909 1.40 0.00 39.69 2.83
4234 8191 6.959606 AGATAGACCTGCATATAACCCAAT 57.040 37.500 0.00 0.00 0.00 3.16
4403 8371 8.277713 GCACATCAATAAATAAAATGCACATCC 58.722 33.333 0.00 0.00 0.00 3.51
4645 8663 6.497259 AGACTCACATTTTCAGGGAGTAACTA 59.503 38.462 0.00 0.00 38.82 2.24
4752 8776 6.326375 CAAACAAGTGCAACCAAGTTAACTA 58.674 36.000 8.92 0.00 37.80 2.24
4873 8897 4.124851 ACCTCTGGAAGTAGTATTTGCG 57.875 45.455 0.00 0.00 33.76 4.85
4906 8955 5.231779 TGAAAATTCAATTTGTCTGTGTGCG 59.768 36.000 0.00 0.00 33.55 5.34
4925 8974 7.336679 ACAGATTCGATATGTCCACAATGAAAA 59.663 33.333 0.00 0.00 26.05 2.29
4948 8998 6.037610 GGCCAAGATTAATCACAAGTAGACAG 59.962 42.308 17.56 0.00 0.00 3.51
5122 9217 7.598493 TGCACTGGAGTTCAAAATTAAAATAGC 59.402 33.333 0.00 0.00 0.00 2.97
5123 9218 9.643693 ATGCACTGGAGTTCAAAATTAAAATAG 57.356 29.630 0.00 0.00 0.00 1.73
5223 9325 3.262660 TGCACCTTCATCTCAGAACATCT 59.737 43.478 0.00 0.00 0.00 2.90
5256 9358 0.877213 CTTTGGCCTTGTGTTGCAGC 60.877 55.000 3.32 0.00 0.00 5.25
5258 9360 1.340889 GATCTTTGGCCTTGTGTTGCA 59.659 47.619 3.32 0.00 0.00 4.08
5259 9361 1.340889 TGATCTTTGGCCTTGTGTTGC 59.659 47.619 3.32 0.00 0.00 4.17
5260 9362 3.006110 ACATGATCTTTGGCCTTGTGTTG 59.994 43.478 3.32 0.00 0.00 3.33
5320 9423 8.993121 CATTACATAGATGGTTGTGAGAATACC 58.007 37.037 0.00 0.00 0.00 2.73
5326 9429 5.585844 TGCACATTACATAGATGGTTGTGAG 59.414 40.000 18.22 4.07 37.80 3.51
5327 9430 5.495640 TGCACATTACATAGATGGTTGTGA 58.504 37.500 18.22 7.34 37.80 3.58
5344 9447 2.231964 GTCCACATTCCATGTTGCACAT 59.768 45.455 0.00 0.00 42.70 3.21
5345 9448 1.612950 GTCCACATTCCATGTTGCACA 59.387 47.619 0.00 0.00 42.70 4.57
5354 9457 1.002659 CAACTACGGGTCCACATTCCA 59.997 52.381 0.00 0.00 0.00 3.53
5396 9499 8.341173 GGTGTCTTCTAAATTATCAAGCATCAG 58.659 37.037 0.00 0.00 0.00 2.90
5397 9500 8.049117 AGGTGTCTTCTAAATTATCAAGCATCA 58.951 33.333 0.00 0.00 0.00 3.07
5457 9584 7.661437 GCAAAATGTCTCCATGACCTACATATA 59.339 37.037 0.00 0.00 44.75 0.86
5458 9585 6.488006 GCAAAATGTCTCCATGACCTACATAT 59.512 38.462 0.00 0.00 44.75 1.78
5510 9638 2.923020 CAATTTATTGGAAGCGTGGCAC 59.077 45.455 7.79 7.79 34.22 5.01
5517 9645 4.382345 AGAGCAGCAATTTATTGGAAGC 57.618 40.909 0.00 0.00 38.21 3.86
5520 9648 6.932356 CTAGAAGAGCAGCAATTTATTGGA 57.068 37.500 0.00 0.00 38.21 3.53
5557 9689 4.446994 TGCACATTTCAAGTTCACAACA 57.553 36.364 0.00 0.00 0.00 3.33
5561 9693 5.740406 CCATTTTGCACATTTCAAGTTCAC 58.260 37.500 0.00 0.00 0.00 3.18
5563 9695 4.272991 TGCCATTTTGCACATTTCAAGTTC 59.727 37.500 0.00 0.00 36.04 3.01
5569 9701 3.560896 ACACTTGCCATTTTGCACATTTC 59.439 39.130 0.00 0.00 41.88 2.17
5571 9703 3.196939 ACACTTGCCATTTTGCACATT 57.803 38.095 0.00 0.00 41.88 2.71
5606 9738 4.531854 TCTCACATGTTGACTGGGAAAAA 58.468 39.130 0.00 0.00 0.00 1.94
5607 9739 4.163441 TCTCACATGTTGACTGGGAAAA 57.837 40.909 0.00 0.00 0.00 2.29
5609 9741 3.136443 ACTTCTCACATGTTGACTGGGAA 59.864 43.478 0.00 0.00 0.00 3.97
5612 9744 5.056480 TGTAACTTCTCACATGTTGACTGG 58.944 41.667 0.00 0.00 0.00 4.00
5614 9746 7.931407 TGTAATGTAACTTCTCACATGTTGACT 59.069 33.333 0.00 0.00 35.59 3.41
5620 9752 7.899841 CGTGATTGTAATGTAACTTCTCACATG 59.100 37.037 0.00 0.00 35.59 3.21
5648 9786 4.457834 AGACAAATAAGAGAGTGGGACG 57.542 45.455 0.00 0.00 0.00 4.79
5717 9855 9.412460 TGGTTGCTCTCAATTCTGAAATAATAT 57.588 29.630 0.00 0.00 34.29 1.28
5782 9920 4.478686 AGAAATAAGGATAGGGCCACAACT 59.521 41.667 6.18 0.00 0.00 3.16
5785 9923 5.466127 AAAGAAATAAGGATAGGGCCACA 57.534 39.130 6.18 0.00 0.00 4.17
5845 10014 9.811995 GGTACTATGTTAATGTTACATCACTCA 57.188 33.333 0.00 0.00 37.42 3.41
5882 10051 7.015226 TGTCTGTCTGTTGTTGACTTAATTG 57.985 36.000 0.00 0.00 35.63 2.32
5887 10056 3.313526 GCATGTCTGTCTGTTGTTGACTT 59.686 43.478 0.00 0.00 35.63 3.01
5922 10124 6.546484 TCCTCTTCTTTCAGGAATCACAATT 58.454 36.000 0.00 0.00 35.75 2.32
5931 10134 4.090090 CAGGTACTCCTCTTCTTTCAGGA 58.910 47.826 0.00 0.00 43.07 3.86
5963 10166 5.708697 TCGTCATACTACATACATACCCCTG 59.291 44.000 0.00 0.00 0.00 4.45
6006 10209 2.753452 CTGTTAAGAGGGAGCGACAGTA 59.247 50.000 0.00 0.00 32.12 2.74
6021 10224 7.335627 TGTTTTCTTCTCTCTGGTTCTGTTAA 58.664 34.615 0.00 0.00 0.00 2.01
6049 10252 6.678878 ACGTGCCTACATTACATACTCTATG 58.321 40.000 0.00 0.00 41.88 2.23
6051 10254 5.824097 TGACGTGCCTACATTACATACTCTA 59.176 40.000 0.00 0.00 0.00 2.43
6052 10255 4.643334 TGACGTGCCTACATTACATACTCT 59.357 41.667 0.00 0.00 0.00 3.24
6069 10435 3.621268 TCTCACCTTTCTTTGTTGACGTG 59.379 43.478 0.00 0.00 0.00 4.49
6105 10471 1.821216 CACAATAGACCGGCCTTGTT 58.179 50.000 0.00 0.00 29.74 2.83
6122 10488 0.810648 TCATTCTTGGCCGAATGCAC 59.189 50.000 22.01 0.00 46.15 4.57
6166 10532 1.160329 AGTCAAGTCAAGTGGCGTGC 61.160 55.000 0.00 0.00 0.00 5.34
6211 10577 8.158169 AGTTACATTACATGATGCAACTATGG 57.842 34.615 10.00 0.00 40.24 2.74
6215 10581 9.534565 CTAGTAGTTACATTACATGATGCAACT 57.465 33.333 14.25 14.25 42.97 3.16
6216 10582 8.276325 GCTAGTAGTTACATTACATGATGCAAC 58.724 37.037 0.00 0.91 34.79 4.17
6217 10583 7.984617 TGCTAGTAGTTACATTACATGATGCAA 59.015 33.333 0.00 0.00 0.00 4.08
6219 10585 7.438160 TGTGCTAGTAGTTACATTACATGATGC 59.562 37.037 0.00 0.00 0.00 3.91
6220 10586 8.871686 TGTGCTAGTAGTTACATTACATGATG 57.128 34.615 0.00 0.00 0.00 3.07
6222 10588 9.529325 GATTGTGCTAGTAGTTACATTACATGA 57.471 33.333 0.00 0.00 0.00 3.07
6223 10589 9.534565 AGATTGTGCTAGTAGTTACATTACATG 57.465 33.333 9.29 0.00 0.00 3.21
6363 10729 1.335182 TGCTGCTGCTACTAGTCGATC 59.665 52.381 17.00 0.00 40.48 3.69
6385 10753 6.365518 CAGATTCAGCTAGCATACATACACTG 59.634 42.308 18.83 9.98 0.00 3.66
6409 10777 1.449423 CGTCCGTCCATGGCATTCA 60.449 57.895 6.96 0.00 0.00 2.57
6410 10778 2.180204 CCGTCCGTCCATGGCATTC 61.180 63.158 6.96 0.00 0.00 2.67
6411 10779 2.124736 CCGTCCGTCCATGGCATT 60.125 61.111 6.96 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.