Multiple sequence alignment - TraesCS3A01G301000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G301000 chr3A 100.000 3461 0 0 1 3461 534994613 534998073 0.000000e+00 6392.0
1 TraesCS3A01G301000 chr3D 94.644 2614 79 26 874 3461 415545663 415543085 0.000000e+00 3995.0
2 TraesCS3A01G301000 chr3D 93.220 59 2 2 65 121 415576229 415576171 6.150000e-13 86.1
3 TraesCS3A01G301000 chr3B 96.064 2007 64 8 873 2874 541528874 541526878 0.000000e+00 3254.0
4 TraesCS3A01G301000 chr3B 88.272 324 14 12 3145 3461 541524034 541523728 1.960000e-97 366.0
5 TraesCS3A01G301000 chr3B 90.493 284 16 3 2867 3149 541526699 541526426 7.060000e-97 364.0
6 TraesCS3A01G301000 chr1D 87.805 82 6 4 727 807 479719591 479719513 3.680000e-15 93.5
7 TraesCS3A01G301000 chr5D 79.279 111 18 4 713 819 538530053 538530162 4.790000e-09 73.1
8 TraesCS3A01G301000 chr4A 94.286 35 2 0 3256 3290 59673998 59673964 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G301000 chr3A 534994613 534998073 3460 False 6392 6392 100.000000 1 3461 1 chr3A.!!$F1 3460
1 TraesCS3A01G301000 chr3D 415543085 415545663 2578 True 3995 3995 94.644000 874 3461 1 chr3D.!!$R1 2587
2 TraesCS3A01G301000 chr3B 541523728 541528874 5146 True 1328 3254 91.609667 873 3461 3 chr3B.!!$R1 2588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.034756 TGTAGCAAAGCTCGGCTGAA 59.965 50.0 19.20 7.02 39.62 3.02 F
951 952 0.114364 AAGGGCCGGGATTTCTGTTT 59.886 50.0 2.18 0.00 0.00 2.83 F
1708 1709 0.321564 TGGTGCCATCGAAACTGGAG 60.322 55.0 7.74 0.00 35.70 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 1828 1.281867 ACATTCCTCTCGGCCATTTCA 59.718 47.619 2.24 0.00 0.00 2.69 R
2130 2131 1.195448 GGCTGTGACATTGTCTCAACG 59.805 52.381 18.96 11.55 35.99 4.10 R
2930 3121 1.522258 GCAACAAAAGTCCATTGCACG 59.478 47.619 3.06 0.00 45.38 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.850046 AGCTGCCAACTAATCCCTTATAT 57.150 39.130 0.00 0.00 0.00 0.86
23 24 6.206180 AGCTGCCAACTAATCCCTTATATT 57.794 37.500 0.00 0.00 0.00 1.28
24 25 7.329746 AGCTGCCAACTAATCCCTTATATTA 57.670 36.000 0.00 0.00 0.00 0.98
25 26 7.755618 AGCTGCCAACTAATCCCTTATATTAA 58.244 34.615 0.00 0.00 0.00 1.40
26 27 8.224720 AGCTGCCAACTAATCCCTTATATTAAA 58.775 33.333 0.00 0.00 0.00 1.52
27 28 9.025041 GCTGCCAACTAATCCCTTATATTAAAT 57.975 33.333 0.00 0.00 0.00 1.40
78 79 8.897872 TTTCGAGACAAAACTATTTTCTAGGT 57.102 30.769 0.00 0.00 0.00 3.08
79 80 7.884816 TCGAGACAAAACTATTTTCTAGGTG 57.115 36.000 0.00 0.00 0.00 4.00
80 81 7.439381 TCGAGACAAAACTATTTTCTAGGTGT 58.561 34.615 0.00 0.00 0.00 4.16
81 82 8.579006 TCGAGACAAAACTATTTTCTAGGTGTA 58.421 33.333 0.00 0.00 0.00 2.90
82 83 8.861101 CGAGACAAAACTATTTTCTAGGTGTAG 58.139 37.037 0.00 0.00 0.00 2.74
83 84 8.549338 AGACAAAACTATTTTCTAGGTGTAGC 57.451 34.615 0.00 0.00 0.00 3.58
84 85 8.154856 AGACAAAACTATTTTCTAGGTGTAGCA 58.845 33.333 0.00 0.00 0.00 3.49
85 86 8.685838 ACAAAACTATTTTCTAGGTGTAGCAA 57.314 30.769 0.00 0.00 0.00 3.91
86 87 9.127277 ACAAAACTATTTTCTAGGTGTAGCAAA 57.873 29.630 0.00 0.00 0.00 3.68
87 88 9.612620 CAAAACTATTTTCTAGGTGTAGCAAAG 57.387 33.333 0.00 0.00 26.93 2.77
88 89 6.986904 ACTATTTTCTAGGTGTAGCAAAGC 57.013 37.500 0.00 0.00 26.93 3.51
89 90 6.712276 ACTATTTTCTAGGTGTAGCAAAGCT 58.288 36.000 0.00 0.00 43.41 3.74
90 91 6.819146 ACTATTTTCTAGGTGTAGCAAAGCTC 59.181 38.462 0.00 0.00 40.44 4.09
91 92 2.941453 TCTAGGTGTAGCAAAGCTCG 57.059 50.000 0.00 0.00 40.44 5.03
92 93 1.476891 TCTAGGTGTAGCAAAGCTCGG 59.523 52.381 0.00 0.00 40.44 4.63
93 94 0.108329 TAGGTGTAGCAAAGCTCGGC 60.108 55.000 0.00 1.50 40.44 5.54
94 95 1.376037 GGTGTAGCAAAGCTCGGCT 60.376 57.895 15.39 15.39 42.56 5.52
95 96 1.639298 GGTGTAGCAAAGCTCGGCTG 61.639 60.000 19.20 2.11 39.62 4.85
96 97 0.670546 GTGTAGCAAAGCTCGGCTGA 60.671 55.000 19.20 0.00 39.62 4.26
97 98 0.034756 TGTAGCAAAGCTCGGCTGAA 59.965 50.000 19.20 7.02 39.62 3.02
98 99 1.339055 TGTAGCAAAGCTCGGCTGAAT 60.339 47.619 19.20 0.00 39.62 2.57
99 100 2.093711 TGTAGCAAAGCTCGGCTGAATA 60.094 45.455 19.20 0.00 39.62 1.75
100 101 2.338577 AGCAAAGCTCGGCTGAATAT 57.661 45.000 10.94 0.00 39.62 1.28
101 102 3.475566 AGCAAAGCTCGGCTGAATATA 57.524 42.857 10.94 0.00 39.62 0.86
102 103 3.397482 AGCAAAGCTCGGCTGAATATAG 58.603 45.455 10.94 0.00 39.62 1.31
103 104 2.481952 GCAAAGCTCGGCTGAATATAGG 59.518 50.000 0.00 0.00 39.62 2.57
104 105 3.803715 GCAAAGCTCGGCTGAATATAGGA 60.804 47.826 0.00 0.00 39.62 2.94
105 106 3.669251 AAGCTCGGCTGAATATAGGAC 57.331 47.619 0.00 0.00 39.62 3.85
106 107 1.896465 AGCTCGGCTGAATATAGGACC 59.104 52.381 0.00 0.00 37.57 4.46
107 108 1.618837 GCTCGGCTGAATATAGGACCA 59.381 52.381 0.00 0.00 0.00 4.02
108 109 2.037251 GCTCGGCTGAATATAGGACCAA 59.963 50.000 0.00 0.00 0.00 3.67
109 110 3.494398 GCTCGGCTGAATATAGGACCAAA 60.494 47.826 0.00 0.00 0.00 3.28
110 111 4.703897 CTCGGCTGAATATAGGACCAAAA 58.296 43.478 0.00 0.00 0.00 2.44
111 112 4.448210 TCGGCTGAATATAGGACCAAAAC 58.552 43.478 0.00 0.00 0.00 2.43
112 113 4.080807 TCGGCTGAATATAGGACCAAAACA 60.081 41.667 0.00 0.00 0.00 2.83
113 114 4.638421 CGGCTGAATATAGGACCAAAACAA 59.362 41.667 0.00 0.00 0.00 2.83
114 115 5.448632 CGGCTGAATATAGGACCAAAACAAC 60.449 44.000 0.00 0.00 0.00 3.32
115 116 5.163550 GGCTGAATATAGGACCAAAACAACC 60.164 44.000 0.00 0.00 0.00 3.77
116 117 5.163550 GCTGAATATAGGACCAAAACAACCC 60.164 44.000 0.00 0.00 0.00 4.11
117 118 5.893500 TGAATATAGGACCAAAACAACCCA 58.106 37.500 0.00 0.00 0.00 4.51
118 119 6.315714 TGAATATAGGACCAAAACAACCCAA 58.684 36.000 0.00 0.00 0.00 4.12
119 120 6.957020 TGAATATAGGACCAAAACAACCCAAT 59.043 34.615 0.00 0.00 0.00 3.16
120 121 8.116669 TGAATATAGGACCAAAACAACCCAATA 58.883 33.333 0.00 0.00 0.00 1.90
121 122 8.533569 AATATAGGACCAAAACAACCCAATAG 57.466 34.615 0.00 0.00 0.00 1.73
122 123 3.506398 AGGACCAAAACAACCCAATAGG 58.494 45.455 0.00 0.00 43.78 2.57
138 139 6.924111 CCCAATAGGTTGAATAATACATGGC 58.076 40.000 0.00 0.00 37.53 4.40
139 140 6.071391 CCCAATAGGTTGAATAATACATGGCC 60.071 42.308 0.00 0.00 37.53 5.36
140 141 6.721208 CCAATAGGTTGAATAATACATGGCCT 59.279 38.462 3.32 0.00 37.53 5.19
141 142 7.309377 CCAATAGGTTGAATAATACATGGCCTG 60.309 40.741 3.32 2.01 37.53 4.85
142 143 4.473444 AGGTTGAATAATACATGGCCTGG 58.527 43.478 3.32 0.00 0.00 4.45
143 144 3.005791 GGTTGAATAATACATGGCCTGGC 59.994 47.826 11.05 11.05 0.00 4.85
156 157 3.073274 GGCCTGGCCCATTTACTATAG 57.927 52.381 27.77 0.00 44.06 1.31
157 158 2.290960 GGCCTGGCCCATTTACTATAGG 60.291 54.545 27.77 0.00 44.06 2.57
158 159 2.375509 GCCTGGCCCATTTACTATAGGT 59.624 50.000 7.66 0.00 0.00 3.08
159 160 3.810743 GCCTGGCCCATTTACTATAGGTG 60.811 52.174 7.66 0.00 0.00 4.00
160 161 3.412386 CTGGCCCATTTACTATAGGTGC 58.588 50.000 0.00 0.00 0.00 5.01
161 162 2.107552 TGGCCCATTTACTATAGGTGCC 59.892 50.000 0.00 5.73 37.73 5.01
162 163 2.423577 GCCCATTTACTATAGGTGCCG 58.576 52.381 4.43 0.00 0.00 5.69
163 164 2.224450 GCCCATTTACTATAGGTGCCGT 60.224 50.000 4.43 0.00 0.00 5.68
164 165 3.399330 CCCATTTACTATAGGTGCCGTG 58.601 50.000 4.43 0.00 0.00 4.94
165 166 3.181458 CCCATTTACTATAGGTGCCGTGT 60.181 47.826 4.43 0.00 0.00 4.49
166 167 3.807622 CCATTTACTATAGGTGCCGTGTG 59.192 47.826 4.43 0.00 0.00 3.82
167 168 4.439057 CATTTACTATAGGTGCCGTGTGT 58.561 43.478 4.43 0.00 0.00 3.72
168 169 3.513680 TTACTATAGGTGCCGTGTGTG 57.486 47.619 4.43 0.00 0.00 3.82
169 170 0.535335 ACTATAGGTGCCGTGTGTGG 59.465 55.000 4.43 0.00 0.00 4.17
170 171 0.179084 CTATAGGTGCCGTGTGTGGG 60.179 60.000 0.00 0.00 0.00 4.61
177 178 4.248842 CCGTGTGTGGGCCTGTCA 62.249 66.667 4.53 0.00 0.00 3.58
178 179 2.972505 CGTGTGTGGGCCTGTCAC 60.973 66.667 4.53 12.13 35.82 3.67
179 180 2.191908 GTGTGTGGGCCTGTCACA 59.808 61.111 19.63 19.63 42.11 3.58
182 183 4.248842 TGTGGGCCTGTCACACGG 62.249 66.667 9.02 0.00 39.83 4.94
189 190 4.624364 CTGTCACACGGGCAGGCA 62.624 66.667 0.00 0.00 0.00 4.75
190 191 4.927782 TGTCACACGGGCAGGCAC 62.928 66.667 0.00 0.00 0.00 5.01
216 217 2.562125 TGCCTGGCACGTTTAATCC 58.438 52.632 19.30 0.00 31.71 3.01
217 218 0.250945 TGCCTGGCACGTTTAATCCA 60.251 50.000 19.30 0.00 31.71 3.41
218 219 0.451783 GCCTGGCACGTTTAATCCAG 59.548 55.000 15.17 9.38 44.25 3.86
220 221 0.451783 CTGGCACGTTTAATCCAGGC 59.548 55.000 8.76 0.00 41.71 4.85
221 222 0.963355 TGGCACGTTTAATCCAGGCC 60.963 55.000 0.00 0.00 40.29 5.19
222 223 1.427819 GCACGTTTAATCCAGGCCG 59.572 57.895 0.00 0.00 0.00 6.13
223 224 1.988834 GCACGTTTAATCCAGGCCGG 61.989 60.000 0.00 0.00 0.00 6.13
224 225 1.078001 ACGTTTAATCCAGGCCGGG 60.078 57.895 17.03 17.03 34.36 5.73
225 226 2.478033 CGTTTAATCCAGGCCGGGC 61.478 63.158 22.67 22.67 34.36 6.13
242 243 3.536917 CCGTGCCGGGCTATCTGA 61.537 66.667 21.46 0.00 44.15 3.27
243 244 2.279517 CGTGCCGGGCTATCTGAC 60.280 66.667 21.46 7.72 0.00 3.51
244 245 2.900273 GTGCCGGGCTATCTGACA 59.100 61.111 21.46 0.00 0.00 3.58
245 246 1.521681 GTGCCGGGCTATCTGACAC 60.522 63.158 21.46 3.14 0.00 3.67
246 247 2.279517 GCCGGGCTATCTGACACG 60.280 66.667 12.87 0.00 0.00 4.49
247 248 2.417516 CCGGGCTATCTGACACGG 59.582 66.667 0.00 0.00 32.74 4.94
248 249 2.417516 CGGGCTATCTGACACGGG 59.582 66.667 0.00 0.00 0.00 5.28
249 250 2.125326 CGGGCTATCTGACACGGGA 61.125 63.158 0.00 0.00 0.00 5.14
250 251 1.464376 CGGGCTATCTGACACGGGAT 61.464 60.000 0.00 0.00 0.00 3.85
251 252 0.318762 GGGCTATCTGACACGGGATC 59.681 60.000 0.00 0.00 0.00 3.36
252 253 0.318762 GGCTATCTGACACGGGATCC 59.681 60.000 1.92 1.92 0.00 3.36
253 254 1.333177 GCTATCTGACACGGGATCCT 58.667 55.000 12.58 0.00 0.00 3.24
254 255 2.515854 GCTATCTGACACGGGATCCTA 58.484 52.381 12.58 0.00 0.00 2.94
255 256 3.093057 GCTATCTGACACGGGATCCTAT 58.907 50.000 12.58 0.00 0.00 2.57
256 257 3.511934 GCTATCTGACACGGGATCCTATT 59.488 47.826 12.58 0.00 0.00 1.73
257 258 4.021016 GCTATCTGACACGGGATCCTATTT 60.021 45.833 12.58 0.00 0.00 1.40
258 259 3.819564 TCTGACACGGGATCCTATTTG 57.180 47.619 12.58 6.32 0.00 2.32
259 260 2.434336 TCTGACACGGGATCCTATTTGG 59.566 50.000 12.58 0.00 37.10 3.28
260 261 2.170607 CTGACACGGGATCCTATTTGGT 59.829 50.000 12.58 1.82 37.07 3.67
261 262 2.093181 TGACACGGGATCCTATTTGGTG 60.093 50.000 12.58 12.16 37.07 4.17
262 263 1.308998 CACGGGATCCTATTTGGTGC 58.691 55.000 12.58 0.00 37.07 5.01
263 264 0.179056 ACGGGATCCTATTTGGTGCG 60.179 55.000 12.58 5.70 37.07 5.34
264 265 0.179056 CGGGATCCTATTTGGTGCGT 60.179 55.000 12.58 0.00 37.07 5.24
265 266 1.069513 CGGGATCCTATTTGGTGCGTA 59.930 52.381 12.58 0.00 37.07 4.42
266 267 2.490991 GGGATCCTATTTGGTGCGTAC 58.509 52.381 12.58 0.00 37.07 3.67
267 268 2.158871 GGGATCCTATTTGGTGCGTACA 60.159 50.000 12.58 0.00 37.07 2.90
268 269 2.870411 GGATCCTATTTGGTGCGTACAC 59.130 50.000 3.84 0.00 46.66 2.90
279 280 4.446413 CGTACACCTGGGCCGGTC 62.446 72.222 15.67 0.00 34.29 4.79
280 281 3.315949 GTACACCTGGGCCGGTCA 61.316 66.667 9.07 3.65 34.29 4.02
281 282 2.527123 TACACCTGGGCCGGTCAA 60.527 61.111 9.07 0.00 34.29 3.18
282 283 2.148052 TACACCTGGGCCGGTCAAA 61.148 57.895 9.07 0.00 34.29 2.69
283 284 2.400269 TACACCTGGGCCGGTCAAAC 62.400 60.000 9.07 0.00 34.29 2.93
284 285 3.175710 ACCTGGGCCGGTCAAACT 61.176 61.111 9.07 0.00 29.14 2.66
285 286 1.844289 ACCTGGGCCGGTCAAACTA 60.844 57.895 9.07 0.00 29.14 2.24
286 287 1.376812 CCTGGGCCGGTCAAACTAC 60.377 63.158 9.07 0.00 0.00 2.73
287 288 1.677552 CTGGGCCGGTCAAACTACT 59.322 57.895 9.07 0.00 0.00 2.57
288 289 0.391263 CTGGGCCGGTCAAACTACTC 60.391 60.000 9.07 0.00 0.00 2.59
289 290 1.122632 TGGGCCGGTCAAACTACTCA 61.123 55.000 9.07 0.00 0.00 3.41
290 291 0.252197 GGGCCGGTCAAACTACTCAT 59.748 55.000 9.07 0.00 0.00 2.90
291 292 1.339727 GGGCCGGTCAAACTACTCATT 60.340 52.381 9.07 0.00 0.00 2.57
292 293 2.433436 GGCCGGTCAAACTACTCATTT 58.567 47.619 0.00 0.00 0.00 2.32
293 294 2.817844 GGCCGGTCAAACTACTCATTTT 59.182 45.455 0.00 0.00 0.00 1.82
294 295 3.119955 GGCCGGTCAAACTACTCATTTTC 60.120 47.826 0.00 0.00 0.00 2.29
295 296 3.424433 GCCGGTCAAACTACTCATTTTCG 60.424 47.826 1.90 0.00 0.00 3.46
296 297 3.124636 CCGGTCAAACTACTCATTTTCGG 59.875 47.826 0.00 0.00 0.00 4.30
297 298 3.744426 CGGTCAAACTACTCATTTTCGGT 59.256 43.478 0.00 0.00 0.00 4.69
298 299 4.212636 CGGTCAAACTACTCATTTTCGGTT 59.787 41.667 0.00 0.00 0.00 4.44
299 300 5.277634 CGGTCAAACTACTCATTTTCGGTTT 60.278 40.000 0.00 0.00 0.00 3.27
300 301 6.500910 GGTCAAACTACTCATTTTCGGTTTT 58.499 36.000 0.00 0.00 0.00 2.43
301 302 6.416750 GGTCAAACTACTCATTTTCGGTTTTG 59.583 38.462 0.00 0.00 0.00 2.44
302 303 6.416750 GTCAAACTACTCATTTTCGGTTTTGG 59.583 38.462 0.00 0.00 0.00 3.28
303 304 6.319152 TCAAACTACTCATTTTCGGTTTTGGA 59.681 34.615 0.00 0.00 0.00 3.53
304 305 6.702716 AACTACTCATTTTCGGTTTTGGAA 57.297 33.333 0.00 0.00 0.00 3.53
305 306 6.702716 ACTACTCATTTTCGGTTTTGGAAA 57.297 33.333 0.00 0.00 0.00 3.13
306 307 6.500910 ACTACTCATTTTCGGTTTTGGAAAC 58.499 36.000 0.00 0.00 33.43 2.78
307 308 4.689071 ACTCATTTTCGGTTTTGGAAACC 58.311 39.130 11.61 11.61 33.43 3.27
308 309 4.160626 ACTCATTTTCGGTTTTGGAAACCA 59.839 37.500 19.31 0.00 40.28 3.67
309 310 4.688021 TCATTTTCGGTTTTGGAAACCAG 58.312 39.130 19.31 13.04 40.28 4.00
310 311 4.160626 TCATTTTCGGTTTTGGAAACCAGT 59.839 37.500 19.31 0.00 40.28 4.00
311 312 4.538746 TTTTCGGTTTTGGAAACCAGTT 57.461 36.364 19.31 0.00 40.28 3.16
312 313 4.538746 TTTCGGTTTTGGAAACCAGTTT 57.461 36.364 19.31 0.00 40.28 2.66
313 314 4.538746 TTCGGTTTTGGAAACCAGTTTT 57.461 36.364 19.31 0.00 40.28 2.43
314 315 4.538746 TCGGTTTTGGAAACCAGTTTTT 57.461 36.364 19.31 0.00 40.28 1.94
441 442 6.836577 TTTTGACATCCGGAAACATTTTTC 57.163 33.333 9.01 0.00 40.54 2.29
442 443 5.521906 TTGACATCCGGAAACATTTTTCA 57.478 34.783 9.01 0.00 42.72 2.69
443 444 5.521906 TGACATCCGGAAACATTTTTCAA 57.478 34.783 9.01 0.00 42.72 2.69
444 445 5.907207 TGACATCCGGAAACATTTTTCAAA 58.093 33.333 9.01 0.00 42.72 2.69
445 446 6.520272 TGACATCCGGAAACATTTTTCAAAT 58.480 32.000 9.01 0.00 42.72 2.32
446 447 6.644592 TGACATCCGGAAACATTTTTCAAATC 59.355 34.615 9.01 0.00 42.72 2.17
447 448 5.633182 ACATCCGGAAACATTTTTCAAATCG 59.367 36.000 9.01 1.18 42.72 3.34
448 449 3.984633 TCCGGAAACATTTTTCAAATCGC 59.015 39.130 0.00 0.00 42.72 4.58
449 450 3.987220 CCGGAAACATTTTTCAAATCGCT 59.013 39.130 0.00 0.00 42.72 4.93
450 451 4.143347 CCGGAAACATTTTTCAAATCGCTG 60.143 41.667 0.00 0.00 42.72 5.18
451 452 4.679197 CGGAAACATTTTTCAAATCGCTGA 59.321 37.500 6.67 0.00 42.72 4.26
452 453 5.174761 CGGAAACATTTTTCAAATCGCTGAA 59.825 36.000 6.67 0.00 42.72 3.02
453 454 6.292061 CGGAAACATTTTTCAAATCGCTGAAA 60.292 34.615 6.67 3.85 42.72 2.69
462 463 8.417780 TTTTCAAATCGCTGAAAATTTCTTGA 57.582 26.923 7.29 4.79 45.71 3.02
463 464 8.417780 TTTCAAATCGCTGAAAATTTCTTGAA 57.582 26.923 11.81 11.81 41.25 2.69
464 465 8.417780 TTCAAATCGCTGAAAATTTCTTGAAA 57.582 26.923 12.85 0.00 32.39 2.69
465 466 8.064447 TCAAATCGCTGAAAATTTCTTGAAAG 57.936 30.769 7.29 0.00 0.00 2.62
466 467 7.706179 TCAAATCGCTGAAAATTTCTTGAAAGT 59.294 29.630 7.29 0.00 0.00 2.66
467 468 7.629027 AATCGCTGAAAATTTCTTGAAAGTC 57.371 32.000 7.29 1.10 0.00 3.01
468 469 6.130298 TCGCTGAAAATTTCTTGAAAGTCA 57.870 33.333 7.29 4.92 0.00 3.41
469 470 6.559810 TCGCTGAAAATTTCTTGAAAGTCAA 58.440 32.000 7.29 0.00 34.79 3.18
470 471 7.032580 TCGCTGAAAATTTCTTGAAAGTCAAA 58.967 30.769 7.29 0.00 35.73 2.69
471 472 7.009174 TCGCTGAAAATTTCTTGAAAGTCAAAC 59.991 33.333 7.29 1.66 35.73 2.93
472 473 7.201427 CGCTGAAAATTTCTTGAAAGTCAAACA 60.201 33.333 7.29 0.00 35.73 2.83
473 474 8.606602 GCTGAAAATTTCTTGAAAGTCAAACAT 58.393 29.630 7.29 0.00 35.73 2.71
483 484 7.504922 TTGAAAGTCAAACATTTTCAAGTCG 57.495 32.000 7.34 0.00 42.57 4.18
484 485 6.033341 TGAAAGTCAAACATTTTCAAGTCGG 58.967 36.000 0.00 0.00 37.74 4.79
485 486 3.964909 AGTCAAACATTTTCAAGTCGGC 58.035 40.909 0.00 0.00 0.00 5.54
486 487 2.719046 GTCAAACATTTTCAAGTCGGCG 59.281 45.455 0.00 0.00 0.00 6.46
487 488 2.614520 TCAAACATTTTCAAGTCGGCGA 59.385 40.909 4.99 4.99 0.00 5.54
488 489 3.065510 TCAAACATTTTCAAGTCGGCGAA 59.934 39.130 12.92 0.00 0.00 4.70
489 490 2.681152 ACATTTTCAAGTCGGCGAAC 57.319 45.000 12.92 6.24 0.00 3.95
490 491 1.944024 ACATTTTCAAGTCGGCGAACA 59.056 42.857 12.92 0.00 0.00 3.18
491 492 2.552315 ACATTTTCAAGTCGGCGAACAT 59.448 40.909 12.92 0.00 0.00 2.71
492 493 3.004315 ACATTTTCAAGTCGGCGAACATT 59.996 39.130 12.92 4.06 0.00 2.71
493 494 3.701532 TTTTCAAGTCGGCGAACATTT 57.298 38.095 12.92 0.85 0.00 2.32
494 495 3.701532 TTTCAAGTCGGCGAACATTTT 57.298 38.095 12.92 0.00 0.00 1.82
495 496 3.701532 TTCAAGTCGGCGAACATTTTT 57.298 38.095 12.92 0.00 0.00 1.94
555 556 9.442047 AATGTTCACCAAATTAAAAACAGTTCA 57.558 25.926 0.00 0.00 30.95 3.18
556 557 9.612066 ATGTTCACCAAATTAAAAACAGTTCAT 57.388 25.926 0.00 0.00 30.95 2.57
557 558 9.442047 TGTTCACCAAATTAAAAACAGTTCATT 57.558 25.926 0.00 0.00 0.00 2.57
598 599 9.708092 TTTCAGCATATCAAAATTTGTTCATCA 57.292 25.926 5.56 0.00 0.00 3.07
599 600 9.708092 TTCAGCATATCAAAATTTGTTCATCAA 57.292 25.926 5.56 0.00 0.00 2.57
783 784 9.476202 AAATTCTAAACTTCTTTTGAAATCCCG 57.524 29.630 0.00 0.00 35.59 5.14
784 785 7.811117 TTCTAAACTTCTTTTGAAATCCCGA 57.189 32.000 0.00 0.00 38.07 5.14
785 786 7.811117 TCTAAACTTCTTTTGAAATCCCGAA 57.189 32.000 0.00 0.00 38.07 4.30
786 787 8.404107 TCTAAACTTCTTTTGAAATCCCGAAT 57.596 30.769 0.00 0.00 38.07 3.34
787 788 8.856103 TCTAAACTTCTTTTGAAATCCCGAATT 58.144 29.630 0.00 0.00 38.07 2.17
788 789 9.476202 CTAAACTTCTTTTGAAATCCCGAATTT 57.524 29.630 0.00 0.00 40.34 1.82
801 802 8.519799 AAATCCCGAATTTCTATAAAGAAGCA 57.480 30.769 0.00 0.00 42.60 3.91
802 803 8.519799 AATCCCGAATTTCTATAAAGAAGCAA 57.480 30.769 0.00 0.00 42.60 3.91
803 804 7.931578 TCCCGAATTTCTATAAAGAAGCAAA 57.068 32.000 0.00 0.00 42.60 3.68
804 805 8.343168 TCCCGAATTTCTATAAAGAAGCAAAA 57.657 30.769 0.00 0.00 42.60 2.44
805 806 8.798402 TCCCGAATTTCTATAAAGAAGCAAAAA 58.202 29.630 0.00 0.00 42.60 1.94
832 833 9.917129 AGTTAAACGAAAAATATAAAACAGGGG 57.083 29.630 0.00 0.00 0.00 4.79
833 834 9.911138 GTTAAACGAAAAATATAAAACAGGGGA 57.089 29.630 0.00 0.00 0.00 4.81
835 836 6.203808 ACGAAAAATATAAAACAGGGGAGC 57.796 37.500 0.00 0.00 0.00 4.70
836 837 5.126545 ACGAAAAATATAAAACAGGGGAGCC 59.873 40.000 0.00 0.00 0.00 4.70
837 838 5.451381 CGAAAAATATAAAACAGGGGAGCCC 60.451 44.000 0.00 0.00 45.90 5.19
868 869 3.486263 GGTTGACCCAAGATCGCG 58.514 61.111 0.00 0.00 0.00 5.87
869 870 2.750888 GGTTGACCCAAGATCGCGC 61.751 63.158 0.00 0.00 0.00 6.86
870 871 2.813474 TTGACCCAAGATCGCGCG 60.813 61.111 26.76 26.76 0.00 6.86
918 919 1.319947 TAGGAGGTCCCCTGTCTGAT 58.680 55.000 8.72 0.00 37.10 2.90
947 948 2.683475 CCAAGGGCCGGGATTTCT 59.317 61.111 11.39 0.00 0.00 2.52
951 952 0.114364 AAGGGCCGGGATTTCTGTTT 59.886 50.000 2.18 0.00 0.00 2.83
959 960 1.068541 GGGATTTCTGTTTGGACGTGC 60.069 52.381 0.00 0.00 0.00 5.34
960 961 1.399727 GGATTTCTGTTTGGACGTGCG 60.400 52.381 1.60 0.00 0.00 5.34
961 962 1.529438 GATTTCTGTTTGGACGTGCGA 59.471 47.619 1.60 0.00 0.00 5.10
962 963 0.653636 TTTCTGTTTGGACGTGCGAC 59.346 50.000 1.60 4.49 0.00 5.19
1418 1419 2.892425 GAGGGCCGTGCATTCTCG 60.892 66.667 0.65 0.00 0.00 4.04
1536 1537 0.535328 TGTTCGACGAAATGGCCCAA 60.535 50.000 12.67 0.00 0.00 4.12
1605 1606 3.793144 CGCAGCTTCAACGCCCTC 61.793 66.667 0.00 0.00 0.00 4.30
1708 1709 0.321564 TGGTGCCATCGAAACTGGAG 60.322 55.000 7.74 0.00 35.70 3.86
1965 1966 0.928922 CAGATGCAGTGACGCTCATC 59.071 55.000 15.12 15.12 34.70 2.92
2054 2055 2.486918 ACAAGGAAAGTACGGGTTTCG 58.513 47.619 0.00 0.00 45.88 3.46
2089 2090 1.280710 ACTTCGGGTGCATGGTTGATA 59.719 47.619 0.00 0.00 0.00 2.15
2122 2123 0.994247 TGGACACCTGGATGATGCTT 59.006 50.000 0.00 0.00 0.00 3.91
2130 2131 4.095483 CACCTGGATGATGCTTTTAGTGTC 59.905 45.833 0.00 0.00 0.00 3.67
2187 2188 1.170290 GCTTACTGTTGCGGGGTTGT 61.170 55.000 0.00 0.00 0.00 3.32
2253 2254 1.561643 TGGTGGAGTTAGAGCCTGAG 58.438 55.000 0.00 0.00 0.00 3.35
2396 2397 1.501582 AGGATGTTAGGAGACAGGCC 58.498 55.000 0.00 0.00 32.19 5.19
2411 2412 0.536460 AGGCCGTTGTCACCGAAATT 60.536 50.000 0.00 0.00 0.00 1.82
2532 2533 2.312741 ACATTGGAGGGTGGATTGATGT 59.687 45.455 0.00 0.00 0.00 3.06
2533 2534 2.512692 TTGGAGGGTGGATTGATGTG 57.487 50.000 0.00 0.00 0.00 3.21
2537 2538 1.679680 GAGGGTGGATTGATGTGCATG 59.320 52.381 0.00 0.00 0.00 4.06
2585 2586 4.103153 ACTCCAAGTTGTGAGGATGAGAAA 59.897 41.667 19.30 0.00 32.80 2.52
2634 2635 3.612479 GCAGGAATTTGAGAAACATGCGT 60.612 43.478 0.00 0.00 0.00 5.24
2653 2654 3.499918 GCGTCTGGGATTCCTAAATCATG 59.500 47.826 2.01 0.00 42.66 3.07
2669 2670 2.323599 TCATGGTTGAATTGGTGCCAA 58.676 42.857 6.08 6.08 40.47 4.52
2728 2729 6.067263 TCGATGTGAAAAGGTTTGTTAAGG 57.933 37.500 0.00 0.00 0.00 2.69
2734 2735 6.183360 TGTGAAAAGGTTTGTTAAGGCTACAG 60.183 38.462 0.00 0.00 0.00 2.74
2736 2737 3.790089 AGGTTTGTTAAGGCTACAGCT 57.210 42.857 0.54 0.00 41.70 4.24
2757 2758 6.591834 CAGCTTTGTTAGTTACTGCTGATAGT 59.408 38.462 12.78 0.00 42.76 2.12
2811 2816 7.559335 AATATTTGGGGAAAGAAGAAAAGCT 57.441 32.000 0.00 0.00 0.00 3.74
2915 3106 0.514691 GAAGCAGCACGACCTTTGAG 59.485 55.000 0.00 0.00 0.00 3.02
2930 3121 3.555139 CCTTTGAGCTGTCGATCTGAATC 59.445 47.826 0.00 0.00 0.00 2.52
2987 3178 1.188863 ACATTTGCATCCTTGGCTCC 58.811 50.000 0.00 0.00 0.00 4.70
2988 3179 1.187974 CATTTGCATCCTTGGCTCCA 58.812 50.000 0.00 0.00 0.00 3.86
3015 3206 5.582689 AATATTGAGGTTTACAAGGCTGC 57.417 39.130 0.00 0.00 0.00 5.25
3093 3285 8.862550 ATAGAGTTTTGCTTCTTTGAACAAAG 57.137 30.769 17.80 17.80 46.82 2.77
3112 3304 9.508567 GAACAAAGGCATTTCTAATTGACTATC 57.491 33.333 0.00 0.00 28.79 2.08
3161 5749 8.925161 TTGACTAGCAATACCATTTTAAATGC 57.075 30.769 11.82 1.68 0.00 3.56
3191 5779 7.584987 ACTGAAAACCTGAAAAATCGTATCTG 58.415 34.615 0.00 0.00 0.00 2.90
3290 5879 8.154203 TCAAAGTTACATCTTGAAGACCATGTA 58.846 33.333 0.00 0.00 31.83 2.29
3305 5894 6.180472 AGACCATGTAGATTTCCGAAATGTT 58.820 36.000 11.15 2.50 0.00 2.71
3325 5918 8.553459 AATGTTACTTATTCTGAACTGGAGTG 57.447 34.615 0.00 0.00 0.00 3.51
3334 5927 5.801531 TCTGAACTGGAGTGCTAGTAAAA 57.198 39.130 0.00 0.00 34.42 1.52
3349 5942 6.318648 TGCTAGTAAAATAGATTTGGTGCAGG 59.681 38.462 0.00 0.00 32.27 4.85
3352 5945 6.721318 AGTAAAATAGATTTGGTGCAGGAGA 58.279 36.000 0.00 0.00 32.27 3.71
3353 5946 5.904362 AAAATAGATTTGGTGCAGGAGAC 57.096 39.130 0.00 0.00 0.00 3.36
3354 5947 4.574674 AATAGATTTGGTGCAGGAGACA 57.425 40.909 0.00 0.00 0.00 3.41
3355 5948 2.191128 AGATTTGGTGCAGGAGACAC 57.809 50.000 0.00 0.00 37.31 3.67
3356 5949 1.421268 AGATTTGGTGCAGGAGACACA 59.579 47.619 0.00 0.00 39.87 3.72
3358 5951 2.363306 TTTGGTGCAGGAGACACAAT 57.637 45.000 0.00 0.00 39.87 2.71
3359 5952 2.363306 TTGGTGCAGGAGACACAATT 57.637 45.000 0.00 0.00 39.87 2.32
3360 5953 2.363306 TGGTGCAGGAGACACAATTT 57.637 45.000 0.00 0.00 39.87 1.82
3382 5985 5.129368 TCCTAATTAAGGGCTTCTGCAAT 57.871 39.130 0.00 0.00 46.55 3.56
3392 5995 1.666888 GCTTCTGCAATTTGTGACGGG 60.667 52.381 0.00 0.00 39.41 5.28
3405 6008 1.134699 GTGACGGGATGCATCTTGAGA 60.135 52.381 25.28 5.51 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.850046 ATATAAGGGATTAGTTGGCAGCT 57.150 39.130 9.34 9.34 0.00 4.24
1 2 7.996098 TTAATATAAGGGATTAGTTGGCAGC 57.004 36.000 0.00 0.00 0.00 5.25
52 53 9.333724 ACCTAGAAAATAGTTTTGTCTCGAAAA 57.666 29.630 0.00 0.00 31.94 2.29
53 54 8.770828 CACCTAGAAAATAGTTTTGTCTCGAAA 58.229 33.333 0.00 0.00 31.94 3.46
54 55 7.929785 ACACCTAGAAAATAGTTTTGTCTCGAA 59.070 33.333 0.00 0.00 31.94 3.71
55 56 7.439381 ACACCTAGAAAATAGTTTTGTCTCGA 58.561 34.615 0.00 0.00 31.94 4.04
56 57 7.653767 ACACCTAGAAAATAGTTTTGTCTCG 57.346 36.000 0.00 0.00 31.94 4.04
57 58 8.657729 GCTACACCTAGAAAATAGTTTTGTCTC 58.342 37.037 0.00 0.00 31.94 3.36
58 59 8.154856 TGCTACACCTAGAAAATAGTTTTGTCT 58.845 33.333 0.00 0.00 31.94 3.41
59 60 8.319143 TGCTACACCTAGAAAATAGTTTTGTC 57.681 34.615 0.00 0.00 31.94 3.18
60 61 8.685838 TTGCTACACCTAGAAAATAGTTTTGT 57.314 30.769 0.00 0.00 31.94 2.83
61 62 9.612620 CTTTGCTACACCTAGAAAATAGTTTTG 57.387 33.333 0.00 0.00 28.51 2.44
62 63 8.297426 GCTTTGCTACACCTAGAAAATAGTTTT 58.703 33.333 0.00 0.00 28.51 2.43
63 64 7.665974 AGCTTTGCTACACCTAGAAAATAGTTT 59.334 33.333 0.00 0.00 36.99 2.66
64 65 7.168905 AGCTTTGCTACACCTAGAAAATAGTT 58.831 34.615 0.00 0.00 36.99 2.24
65 66 6.712276 AGCTTTGCTACACCTAGAAAATAGT 58.288 36.000 0.00 0.00 36.99 2.12
66 67 6.019479 CGAGCTTTGCTACACCTAGAAAATAG 60.019 42.308 0.00 0.00 39.88 1.73
67 68 5.810587 CGAGCTTTGCTACACCTAGAAAATA 59.189 40.000 0.00 0.00 39.88 1.40
68 69 4.631813 CGAGCTTTGCTACACCTAGAAAAT 59.368 41.667 0.00 0.00 39.88 1.82
69 70 3.994392 CGAGCTTTGCTACACCTAGAAAA 59.006 43.478 0.00 0.00 39.88 2.29
70 71 3.585862 CGAGCTTTGCTACACCTAGAAA 58.414 45.455 0.00 0.00 39.88 2.52
71 72 2.094182 CCGAGCTTTGCTACACCTAGAA 60.094 50.000 0.00 0.00 39.88 2.10
72 73 1.476891 CCGAGCTTTGCTACACCTAGA 59.523 52.381 0.00 0.00 39.88 2.43
73 74 1.927895 CCGAGCTTTGCTACACCTAG 58.072 55.000 0.00 0.00 39.88 3.02
74 75 0.108329 GCCGAGCTTTGCTACACCTA 60.108 55.000 0.00 0.00 39.88 3.08
75 76 1.376037 GCCGAGCTTTGCTACACCT 60.376 57.895 0.00 0.00 39.88 4.00
76 77 1.376037 AGCCGAGCTTTGCTACACC 60.376 57.895 8.98 0.00 39.88 4.16
77 78 0.670546 TCAGCCGAGCTTTGCTACAC 60.671 55.000 10.22 0.00 39.88 2.90
78 79 0.034756 TTCAGCCGAGCTTTGCTACA 59.965 50.000 10.22 0.00 39.88 2.74
79 80 1.373570 ATTCAGCCGAGCTTTGCTAC 58.626 50.000 10.22 0.00 39.88 3.58
80 81 2.979814 TATTCAGCCGAGCTTTGCTA 57.020 45.000 10.22 0.00 39.88 3.49
81 82 2.338577 ATATTCAGCCGAGCTTTGCT 57.661 45.000 5.19 5.19 43.88 3.91
82 83 2.481952 CCTATATTCAGCCGAGCTTTGC 59.518 50.000 0.42 0.42 36.40 3.68
83 84 3.743396 GTCCTATATTCAGCCGAGCTTTG 59.257 47.826 0.00 0.00 36.40 2.77
84 85 3.244249 GGTCCTATATTCAGCCGAGCTTT 60.244 47.826 0.00 0.00 36.40 3.51
85 86 2.300437 GGTCCTATATTCAGCCGAGCTT 59.700 50.000 0.00 0.00 36.40 3.74
86 87 1.896465 GGTCCTATATTCAGCCGAGCT 59.104 52.381 0.00 0.00 40.77 4.09
87 88 1.618837 TGGTCCTATATTCAGCCGAGC 59.381 52.381 0.00 0.00 0.00 5.03
88 89 4.336889 TTTGGTCCTATATTCAGCCGAG 57.663 45.455 0.00 0.00 0.00 4.63
89 90 4.080807 TGTTTTGGTCCTATATTCAGCCGA 60.081 41.667 0.00 0.00 0.00 5.54
90 91 4.196193 TGTTTTGGTCCTATATTCAGCCG 58.804 43.478 0.00 0.00 0.00 5.52
91 92 5.163550 GGTTGTTTTGGTCCTATATTCAGCC 60.164 44.000 0.00 0.00 0.00 4.85
92 93 5.163550 GGGTTGTTTTGGTCCTATATTCAGC 60.164 44.000 0.00 0.00 0.00 4.26
93 94 5.949354 TGGGTTGTTTTGGTCCTATATTCAG 59.051 40.000 0.00 0.00 0.00 3.02
94 95 5.893500 TGGGTTGTTTTGGTCCTATATTCA 58.106 37.500 0.00 0.00 0.00 2.57
95 96 6.844097 TTGGGTTGTTTTGGTCCTATATTC 57.156 37.500 0.00 0.00 0.00 1.75
96 97 7.563556 CCTATTGGGTTGTTTTGGTCCTATATT 59.436 37.037 0.00 0.00 0.00 1.28
97 98 7.066781 CCTATTGGGTTGTTTTGGTCCTATAT 58.933 38.462 0.00 0.00 0.00 0.86
98 99 6.428295 CCTATTGGGTTGTTTTGGTCCTATA 58.572 40.000 0.00 0.00 0.00 1.31
99 100 5.269189 CCTATTGGGTTGTTTTGGTCCTAT 58.731 41.667 0.00 0.00 0.00 2.57
100 101 4.668636 CCTATTGGGTTGTTTTGGTCCTA 58.331 43.478 0.00 0.00 0.00 2.94
101 102 3.506398 CCTATTGGGTTGTTTTGGTCCT 58.494 45.455 0.00 0.00 0.00 3.85
102 103 3.953712 CCTATTGGGTTGTTTTGGTCC 57.046 47.619 0.00 0.00 0.00 4.46
114 115 6.071391 GGCCATGTATTATTCAACCTATTGGG 60.071 42.308 0.00 0.00 41.89 4.12
115 116 6.721208 AGGCCATGTATTATTCAACCTATTGG 59.279 38.462 5.01 0.00 36.39 3.16
116 117 7.309377 CCAGGCCATGTATTATTCAACCTATTG 60.309 40.741 5.01 0.00 37.14 1.90
117 118 6.721208 CCAGGCCATGTATTATTCAACCTATT 59.279 38.462 5.01 0.00 0.00 1.73
118 119 6.248433 CCAGGCCATGTATTATTCAACCTAT 58.752 40.000 5.01 0.00 0.00 2.57
119 120 5.630121 CCAGGCCATGTATTATTCAACCTA 58.370 41.667 5.01 0.00 0.00 3.08
120 121 4.473444 CCAGGCCATGTATTATTCAACCT 58.527 43.478 5.01 0.00 0.00 3.50
121 122 3.005791 GCCAGGCCATGTATTATTCAACC 59.994 47.826 5.01 0.00 0.00 3.77
122 123 4.243007 GCCAGGCCATGTATTATTCAAC 57.757 45.455 5.01 0.00 0.00 3.18
137 138 2.375509 ACCTATAGTAAATGGGCCAGGC 59.624 50.000 13.78 1.26 0.00 4.85
138 139 3.810743 GCACCTATAGTAAATGGGCCAGG 60.811 52.174 13.78 6.76 0.00 4.45
139 140 3.412386 GCACCTATAGTAAATGGGCCAG 58.588 50.000 13.78 0.00 0.00 4.85
140 141 2.107552 GGCACCTATAGTAAATGGGCCA 59.892 50.000 9.61 9.61 36.56 5.36
141 142 2.791655 GGCACCTATAGTAAATGGGCC 58.208 52.381 3.79 3.79 0.00 5.80
142 143 2.224450 ACGGCACCTATAGTAAATGGGC 60.224 50.000 0.00 0.00 0.00 5.36
143 144 3.181458 ACACGGCACCTATAGTAAATGGG 60.181 47.826 0.00 0.00 0.00 4.00
144 145 3.807622 CACACGGCACCTATAGTAAATGG 59.192 47.826 0.00 0.00 0.00 3.16
145 146 4.270084 CACACACGGCACCTATAGTAAATG 59.730 45.833 0.00 0.00 0.00 2.32
146 147 4.439057 CACACACGGCACCTATAGTAAAT 58.561 43.478 0.00 0.00 0.00 1.40
147 148 3.368635 CCACACACGGCACCTATAGTAAA 60.369 47.826 0.00 0.00 0.00 2.01
148 149 2.166870 CCACACACGGCACCTATAGTAA 59.833 50.000 0.00 0.00 0.00 2.24
149 150 1.752498 CCACACACGGCACCTATAGTA 59.248 52.381 0.00 0.00 0.00 1.82
150 151 0.535335 CCACACACGGCACCTATAGT 59.465 55.000 0.00 0.00 0.00 2.12
151 152 0.179084 CCCACACACGGCACCTATAG 60.179 60.000 0.00 0.00 0.00 1.31
152 153 1.901820 CCCACACACGGCACCTATA 59.098 57.895 0.00 0.00 0.00 1.31
153 154 2.668632 CCCACACACGGCACCTAT 59.331 61.111 0.00 0.00 0.00 2.57
154 155 4.323477 GCCCACACACGGCACCTA 62.323 66.667 0.00 0.00 46.27 3.08
160 161 4.248842 TGACAGGCCCACACACGG 62.249 66.667 0.00 0.00 0.00 4.94
161 162 2.972505 GTGACAGGCCCACACACG 60.973 66.667 16.25 0.00 34.81 4.49
162 163 2.191908 TGTGACAGGCCCACACAC 59.808 61.111 18.82 15.09 39.36 3.82
165 166 4.248842 CCGTGTGACAGGCCCACA 62.249 66.667 9.02 9.02 41.68 4.17
172 173 4.624364 TGCCTGCCCGTGTGACAG 62.624 66.667 0.00 0.00 0.00 3.51
173 174 4.927782 GTGCCTGCCCGTGTGACA 62.928 66.667 0.00 0.00 0.00 3.58
198 199 0.250945 TGGATTAAACGTGCCAGGCA 60.251 50.000 11.22 11.22 35.60 4.75
199 200 0.451783 CTGGATTAAACGTGCCAGGC 59.548 55.000 3.66 3.66 43.22 4.85
201 202 0.451783 GCCTGGATTAAACGTGCCAG 59.548 55.000 0.00 12.16 45.81 4.85
202 203 0.963355 GGCCTGGATTAAACGTGCCA 60.963 55.000 0.00 0.00 37.36 4.92
203 204 1.807226 GGCCTGGATTAAACGTGCC 59.193 57.895 0.00 0.00 0.00 5.01
204 205 1.427819 CGGCCTGGATTAAACGTGC 59.572 57.895 0.00 0.00 0.00 5.34
205 206 1.373590 CCCGGCCTGGATTAAACGTG 61.374 60.000 7.60 0.00 42.00 4.49
206 207 1.078001 CCCGGCCTGGATTAAACGT 60.078 57.895 7.60 0.00 42.00 3.99
207 208 2.478033 GCCCGGCCTGGATTAAACG 61.478 63.158 18.87 0.00 42.00 3.60
208 209 2.125326 GGCCCGGCCTGGATTAAAC 61.125 63.158 22.31 0.00 46.69 2.01
209 210 2.277404 GGCCCGGCCTGGATTAAA 59.723 61.111 22.31 0.00 46.69 1.52
227 228 1.521681 GTGTCAGATAGCCCGGCAC 60.522 63.158 13.15 0.00 0.00 5.01
228 229 2.900273 GTGTCAGATAGCCCGGCA 59.100 61.111 13.15 0.00 0.00 5.69
229 230 2.279517 CGTGTCAGATAGCCCGGC 60.280 66.667 0.00 0.00 0.00 6.13
230 231 2.417516 CCGTGTCAGATAGCCCGG 59.582 66.667 0.00 0.00 0.00 5.73
231 232 1.464376 ATCCCGTGTCAGATAGCCCG 61.464 60.000 0.00 0.00 0.00 6.13
232 233 0.318762 GATCCCGTGTCAGATAGCCC 59.681 60.000 0.00 0.00 0.00 5.19
233 234 0.318762 GGATCCCGTGTCAGATAGCC 59.681 60.000 0.00 0.00 0.00 3.93
234 235 1.333177 AGGATCCCGTGTCAGATAGC 58.667 55.000 8.55 0.00 0.00 2.97
235 236 5.473931 CAAATAGGATCCCGTGTCAGATAG 58.526 45.833 8.55 0.00 0.00 2.08
236 237 4.283467 CCAAATAGGATCCCGTGTCAGATA 59.717 45.833 8.55 0.00 41.22 1.98
237 238 3.071602 CCAAATAGGATCCCGTGTCAGAT 59.928 47.826 8.55 0.00 41.22 2.90
238 239 2.434336 CCAAATAGGATCCCGTGTCAGA 59.566 50.000 8.55 0.00 41.22 3.27
239 240 2.170607 ACCAAATAGGATCCCGTGTCAG 59.829 50.000 8.55 0.00 41.22 3.51
240 241 2.093181 CACCAAATAGGATCCCGTGTCA 60.093 50.000 8.55 0.00 41.22 3.58
241 242 2.561569 CACCAAATAGGATCCCGTGTC 58.438 52.381 8.55 0.00 41.22 3.67
242 243 1.408266 GCACCAAATAGGATCCCGTGT 60.408 52.381 8.55 0.00 41.22 4.49
243 244 1.308998 GCACCAAATAGGATCCCGTG 58.691 55.000 8.55 6.71 41.22 4.94
244 245 0.179056 CGCACCAAATAGGATCCCGT 60.179 55.000 8.55 0.00 41.22 5.28
245 246 0.179056 ACGCACCAAATAGGATCCCG 60.179 55.000 8.55 3.80 41.22 5.14
246 247 2.158871 TGTACGCACCAAATAGGATCCC 60.159 50.000 8.55 0.00 41.22 3.85
247 248 2.870411 GTGTACGCACCAAATAGGATCC 59.130 50.000 2.48 2.48 41.22 3.36
262 263 4.446413 GACCGGCCCAGGTGTACG 62.446 72.222 7.10 0.00 46.09 3.67
263 264 2.400269 TTTGACCGGCCCAGGTGTAC 62.400 60.000 7.10 0.00 46.09 2.90
264 265 2.148052 TTTGACCGGCCCAGGTGTA 61.148 57.895 7.10 0.00 46.09 2.90
265 266 3.494254 TTTGACCGGCCCAGGTGT 61.494 61.111 7.10 0.00 46.09 4.16
266 267 2.119484 TAGTTTGACCGGCCCAGGTG 62.119 60.000 7.10 0.00 46.09 4.00
268 269 1.376812 GTAGTTTGACCGGCCCAGG 60.377 63.158 0.00 0.00 37.30 4.45
269 270 0.391263 GAGTAGTTTGACCGGCCCAG 60.391 60.000 0.00 0.00 0.00 4.45
270 271 1.122632 TGAGTAGTTTGACCGGCCCA 61.123 55.000 0.00 0.00 0.00 5.36
271 272 0.252197 ATGAGTAGTTTGACCGGCCC 59.748 55.000 0.00 0.00 0.00 5.80
272 273 2.109425 AATGAGTAGTTTGACCGGCC 57.891 50.000 0.00 0.00 0.00 6.13
273 274 3.424433 CGAAAATGAGTAGTTTGACCGGC 60.424 47.826 0.00 0.00 0.00 6.13
274 275 3.124636 CCGAAAATGAGTAGTTTGACCGG 59.875 47.826 0.00 0.00 0.00 5.28
275 276 3.744426 ACCGAAAATGAGTAGTTTGACCG 59.256 43.478 0.00 0.00 0.00 4.79
276 277 5.684550 AACCGAAAATGAGTAGTTTGACC 57.315 39.130 0.00 0.00 0.00 4.02
277 278 6.416750 CCAAAACCGAAAATGAGTAGTTTGAC 59.583 38.462 0.00 0.00 0.00 3.18
278 279 6.319152 TCCAAAACCGAAAATGAGTAGTTTGA 59.681 34.615 0.00 0.00 0.00 2.69
279 280 6.500041 TCCAAAACCGAAAATGAGTAGTTTG 58.500 36.000 0.00 0.00 0.00 2.93
280 281 6.702716 TCCAAAACCGAAAATGAGTAGTTT 57.297 33.333 0.00 0.00 0.00 2.66
281 282 6.702716 TTCCAAAACCGAAAATGAGTAGTT 57.297 33.333 0.00 0.00 0.00 2.24
282 283 6.460537 GGTTTCCAAAACCGAAAATGAGTAGT 60.461 38.462 5.88 0.00 31.32 2.73
283 284 5.918576 GGTTTCCAAAACCGAAAATGAGTAG 59.081 40.000 5.88 0.00 31.32 2.57
284 285 5.360144 TGGTTTCCAAAACCGAAAATGAGTA 59.640 36.000 14.93 0.00 43.15 2.59
285 286 4.160626 TGGTTTCCAAAACCGAAAATGAGT 59.839 37.500 14.93 0.00 43.15 3.41
286 287 4.688021 TGGTTTCCAAAACCGAAAATGAG 58.312 39.130 14.93 0.00 43.15 2.90
287 288 4.160626 ACTGGTTTCCAAAACCGAAAATGA 59.839 37.500 14.93 0.00 43.15 2.57
288 289 4.438148 ACTGGTTTCCAAAACCGAAAATG 58.562 39.130 14.93 5.51 43.15 2.32
289 290 4.746535 ACTGGTTTCCAAAACCGAAAAT 57.253 36.364 14.93 0.00 43.15 1.82
290 291 4.538746 AACTGGTTTCCAAAACCGAAAA 57.461 36.364 14.93 0.00 43.15 2.29
291 292 4.538746 AAACTGGTTTCCAAAACCGAAA 57.461 36.364 14.93 0.00 43.15 3.46
292 293 4.538746 AAAACTGGTTTCCAAAACCGAA 57.461 36.364 14.93 0.49 43.15 4.30
293 294 4.538746 AAAAACTGGTTTCCAAAACCGA 57.461 36.364 14.93 5.66 43.15 4.69
417 418 6.818644 TGAAAAATGTTTCCGGATGTCAAAAA 59.181 30.769 4.15 0.00 42.20 1.94
418 419 6.341316 TGAAAAATGTTTCCGGATGTCAAAA 58.659 32.000 4.15 0.00 42.20 2.44
419 420 5.907207 TGAAAAATGTTTCCGGATGTCAAA 58.093 33.333 4.15 0.00 42.20 2.69
420 421 5.521906 TGAAAAATGTTTCCGGATGTCAA 57.478 34.783 4.15 0.00 42.20 3.18
421 422 5.521906 TTGAAAAATGTTTCCGGATGTCA 57.478 34.783 4.15 5.53 42.20 3.58
422 423 6.183359 CGATTTGAAAAATGTTTCCGGATGTC 60.183 38.462 4.15 0.00 42.20 3.06
423 424 5.633182 CGATTTGAAAAATGTTTCCGGATGT 59.367 36.000 4.15 0.00 42.20 3.06
424 425 5.444481 GCGATTTGAAAAATGTTTCCGGATG 60.444 40.000 4.15 0.00 42.20 3.51
425 426 4.625311 GCGATTTGAAAAATGTTTCCGGAT 59.375 37.500 4.15 0.00 42.20 4.18
426 427 3.984633 GCGATTTGAAAAATGTTTCCGGA 59.015 39.130 0.00 0.00 42.20 5.14
427 428 3.987220 AGCGATTTGAAAAATGTTTCCGG 59.013 39.130 5.90 0.00 42.20 5.14
428 429 4.679197 TCAGCGATTTGAAAAATGTTTCCG 59.321 37.500 5.90 3.52 42.20 4.30
429 430 6.523676 TTCAGCGATTTGAAAAATGTTTCC 57.476 33.333 5.90 0.00 42.20 3.13
438 439 8.417780 TTCAAGAAATTTTCAGCGATTTGAAA 57.582 26.923 11.53 6.20 43.32 2.69
439 440 8.417780 TTTCAAGAAATTTTCAGCGATTTGAA 57.582 26.923 11.53 12.76 35.38 2.69
440 441 7.706179 ACTTTCAAGAAATTTTCAGCGATTTGA 59.294 29.630 11.53 8.14 0.00 2.69
441 442 7.844482 ACTTTCAAGAAATTTTCAGCGATTTG 58.156 30.769 11.53 6.16 0.00 2.32
442 443 7.706179 TGACTTTCAAGAAATTTTCAGCGATTT 59.294 29.630 11.53 0.00 0.00 2.17
443 444 7.202526 TGACTTTCAAGAAATTTTCAGCGATT 58.797 30.769 11.53 0.00 0.00 3.34
444 445 6.738114 TGACTTTCAAGAAATTTTCAGCGAT 58.262 32.000 11.53 0.00 0.00 4.58
445 446 6.130298 TGACTTTCAAGAAATTTTCAGCGA 57.870 33.333 11.53 2.21 0.00 4.93
446 447 6.810888 TTGACTTTCAAGAAATTTTCAGCG 57.189 33.333 11.53 0.00 31.83 5.18
447 448 7.962917 TGTTTGACTTTCAAGAAATTTTCAGC 58.037 30.769 11.53 0.00 37.70 4.26
459 460 6.529829 CCGACTTGAAAATGTTTGACTTTCAA 59.470 34.615 8.45 8.45 43.32 2.69
460 461 6.033341 CCGACTTGAAAATGTTTGACTTTCA 58.967 36.000 0.00 0.00 37.30 2.69
461 462 5.051708 GCCGACTTGAAAATGTTTGACTTTC 60.052 40.000 0.00 0.00 0.00 2.62
462 463 4.803613 GCCGACTTGAAAATGTTTGACTTT 59.196 37.500 0.00 0.00 0.00 2.66
463 464 4.359706 GCCGACTTGAAAATGTTTGACTT 58.640 39.130 0.00 0.00 0.00 3.01
464 465 3.548014 CGCCGACTTGAAAATGTTTGACT 60.548 43.478 0.00 0.00 0.00 3.41
465 466 2.719046 CGCCGACTTGAAAATGTTTGAC 59.281 45.455 0.00 0.00 0.00 3.18
466 467 2.614520 TCGCCGACTTGAAAATGTTTGA 59.385 40.909 0.00 0.00 0.00 2.69
467 468 2.993545 TCGCCGACTTGAAAATGTTTG 58.006 42.857 0.00 0.00 0.00 2.93
468 469 3.181495 TGTTCGCCGACTTGAAAATGTTT 60.181 39.130 0.00 0.00 0.00 2.83
469 470 2.356382 TGTTCGCCGACTTGAAAATGTT 59.644 40.909 0.00 0.00 0.00 2.71
470 471 1.944024 TGTTCGCCGACTTGAAAATGT 59.056 42.857 0.00 0.00 0.00 2.71
471 472 2.679355 TGTTCGCCGACTTGAAAATG 57.321 45.000 0.00 0.00 0.00 2.32
472 473 3.915437 AATGTTCGCCGACTTGAAAAT 57.085 38.095 0.00 0.00 0.00 1.82
473 474 3.701532 AAATGTTCGCCGACTTGAAAA 57.298 38.095 0.00 0.00 0.00 2.29
474 475 3.701532 AAAATGTTCGCCGACTTGAAA 57.298 38.095 0.00 0.00 0.00 2.69
475 476 3.701532 AAAAATGTTCGCCGACTTGAA 57.298 38.095 0.00 0.00 0.00 2.69
529 530 9.442047 TGAACTGTTTTTAATTTGGTGAACATT 57.558 25.926 0.00 0.00 0.00 2.71
530 531 9.612066 ATGAACTGTTTTTAATTTGGTGAACAT 57.388 25.926 0.00 0.00 0.00 2.71
531 532 9.442047 AATGAACTGTTTTTAATTTGGTGAACA 57.558 25.926 0.00 0.00 0.00 3.18
572 573 9.708092 TGATGAACAAATTTTGATATGCTGAAA 57.292 25.926 15.81 0.00 0.00 2.69
573 574 9.708092 TTGATGAACAAATTTTGATATGCTGAA 57.292 25.926 15.81 0.00 35.39 3.02
574 575 9.708092 TTTGATGAACAAATTTTGATATGCTGA 57.292 25.926 15.81 0.00 42.57 4.26
757 758 9.476202 CGGGATTTCAAAAGAAGTTTAGAATTT 57.524 29.630 0.00 0.00 0.00 1.82
758 759 8.856103 TCGGGATTTCAAAAGAAGTTTAGAATT 58.144 29.630 0.00 0.00 0.00 2.17
759 760 8.404107 TCGGGATTTCAAAAGAAGTTTAGAAT 57.596 30.769 0.00 0.00 0.00 2.40
760 761 7.811117 TCGGGATTTCAAAAGAAGTTTAGAA 57.189 32.000 0.00 0.00 0.00 2.10
761 762 7.811117 TTCGGGATTTCAAAAGAAGTTTAGA 57.189 32.000 0.00 0.00 0.00 2.10
762 763 9.476202 AAATTCGGGATTTCAAAAGAAGTTTAG 57.524 29.630 0.00 0.00 32.49 1.85
776 777 8.519799 TGCTTCTTTATAGAAATTCGGGATTT 57.480 30.769 0.00 0.00 39.80 2.17
777 778 8.519799 TTGCTTCTTTATAGAAATTCGGGATT 57.480 30.769 0.00 0.00 39.80 3.01
778 779 8.519799 TTTGCTTCTTTATAGAAATTCGGGAT 57.480 30.769 0.00 0.00 39.80 3.85
779 780 7.931578 TTTGCTTCTTTATAGAAATTCGGGA 57.068 32.000 0.00 0.00 39.80 5.14
780 781 8.980143 TTTTTGCTTCTTTATAGAAATTCGGG 57.020 30.769 0.00 0.00 39.80 5.14
806 807 9.917129 CCCCTGTTTTATATTTTTCGTTTAACT 57.083 29.630 0.00 0.00 0.00 2.24
807 808 9.911138 TCCCCTGTTTTATATTTTTCGTTTAAC 57.089 29.630 0.00 0.00 0.00 2.01
809 810 8.245491 GCTCCCCTGTTTTATATTTTTCGTTTA 58.755 33.333 0.00 0.00 0.00 2.01
810 811 7.094631 GCTCCCCTGTTTTATATTTTTCGTTT 58.905 34.615 0.00 0.00 0.00 3.60
811 812 6.350696 GGCTCCCCTGTTTTATATTTTTCGTT 60.351 38.462 0.00 0.00 0.00 3.85
812 813 5.126545 GGCTCCCCTGTTTTATATTTTTCGT 59.873 40.000 0.00 0.00 0.00 3.85
813 814 5.451381 GGGCTCCCCTGTTTTATATTTTTCG 60.451 44.000 0.00 0.00 41.34 3.46
814 815 5.914033 GGGCTCCCCTGTTTTATATTTTTC 58.086 41.667 0.00 0.00 41.34 2.29
815 816 5.950544 GGGCTCCCCTGTTTTATATTTTT 57.049 39.130 0.00 0.00 41.34 1.94
851 852 2.750888 GCGCGATCTTGGGTCAACC 61.751 63.158 12.10 0.00 40.81 3.77
852 853 2.785258 GCGCGATCTTGGGTCAAC 59.215 61.111 12.10 0.00 0.00 3.18
853 854 2.813474 CGCGCGATCTTGGGTCAA 60.813 61.111 28.94 0.00 0.00 3.18
856 857 4.760047 AAGCGCGCGATCTTGGGT 62.760 61.111 37.18 8.25 0.00 4.51
857 858 3.929948 GAAGCGCGCGATCTTGGG 61.930 66.667 37.18 1.14 0.00 4.12
858 859 1.970917 AAAGAAGCGCGCGATCTTGG 61.971 55.000 37.60 11.25 33.86 3.61
859 860 0.585029 GAAAGAAGCGCGCGATCTTG 60.585 55.000 37.60 11.92 33.86 3.02
860 861 1.696832 GGAAAGAAGCGCGCGATCTT 61.697 55.000 34.31 34.31 35.00 2.40
861 862 2.167861 GGAAAGAAGCGCGCGATCT 61.168 57.895 37.18 30.71 0.00 2.75
862 863 2.321400 GGAAAGAAGCGCGCGATC 59.679 61.111 37.18 28.95 0.00 3.69
863 864 3.195698 GGGAAAGAAGCGCGCGAT 61.196 61.111 37.18 28.60 0.00 4.58
864 865 4.673298 TGGGAAAGAAGCGCGCGA 62.673 61.111 37.18 4.89 0.00 5.87
865 866 4.152625 CTGGGAAAGAAGCGCGCG 62.153 66.667 28.44 28.44 0.00 6.86
866 867 4.467062 GCTGGGAAAGAAGCGCGC 62.467 66.667 26.66 26.66 0.00 6.86
870 871 4.467062 GCGCGCTGGGAAAGAAGC 62.467 66.667 26.67 0.00 36.03 3.86
871 872 3.031964 CTGCGCGCTGGGAAAGAAG 62.032 63.158 33.29 13.95 0.00 2.85
872 873 3.049674 CTGCGCGCTGGGAAAGAA 61.050 61.111 33.29 7.29 0.00 2.52
918 919 1.850549 CCCTTGGGGTCAAACCTGA 59.149 57.895 0.00 0.00 38.64 3.86
947 948 2.962786 CCGTCGCACGTCCAAACA 60.963 61.111 7.68 0.00 40.58 2.83
960 961 2.108344 TTTTTCCGCTTCGCACCGTC 62.108 55.000 0.00 0.00 0.00 4.79
961 962 2.181521 TTTTTCCGCTTCGCACCGT 61.182 52.632 0.00 0.00 0.00 4.83
962 963 1.724581 GTTTTTCCGCTTCGCACCG 60.725 57.895 0.00 0.00 0.00 4.94
963 964 1.371267 GGTTTTTCCGCTTCGCACC 60.371 57.895 0.00 0.00 0.00 5.01
964 965 0.933047 GTGGTTTTTCCGCTTCGCAC 60.933 55.000 0.00 0.00 42.91 5.34
965 966 1.357334 GTGGTTTTTCCGCTTCGCA 59.643 52.632 0.00 0.00 42.91 5.10
966 967 1.371267 GGTGGTTTTTCCGCTTCGC 60.371 57.895 0.00 0.00 45.32 4.70
970 971 2.841160 GCGTGGTGGTTTTTCCGCT 61.841 57.895 0.00 0.00 45.32 5.52
1143 1144 1.681327 GGTGGTGGAGCGTAGGAGA 60.681 63.158 0.00 0.00 0.00 3.71
1708 1709 2.205074 CACGTACTCATGGATCCAAGC 58.795 52.381 20.67 0.07 0.00 4.01
1827 1828 1.281867 ACATTCCTCTCGGCCATTTCA 59.718 47.619 2.24 0.00 0.00 2.69
1965 1966 2.606308 GGCACATGCACAAAGAACAGAG 60.606 50.000 6.15 0.00 44.36 3.35
2054 2055 1.734465 CGAAGTGCTTGATTCCAGGTC 59.266 52.381 0.00 0.00 0.00 3.85
2080 2081 6.219473 CAGAGCGACTAAGAATATCAACCAT 58.781 40.000 0.00 0.00 0.00 3.55
2089 2090 2.166664 GGTGTCCAGAGCGACTAAGAAT 59.833 50.000 0.00 0.00 33.70 2.40
2130 2131 1.195448 GGCTGTGACATTGTCTCAACG 59.805 52.381 18.96 11.55 35.99 4.10
2187 2188 1.204704 CGTGAGTCACCATGAGCCTTA 59.795 52.381 17.57 0.00 0.00 2.69
2278 2279 5.063204 CCCTGTCTCGGCATATAAATTTGA 58.937 41.667 0.00 0.00 0.00 2.69
2292 2293 2.997315 TGCCACCTCCCTGTCTCG 60.997 66.667 0.00 0.00 0.00 4.04
2376 2377 2.679082 GGCCTGTCTCCTAACATCCTA 58.321 52.381 0.00 0.00 0.00 2.94
2396 2397 1.268794 TGCCAAATTTCGGTGACAACG 60.269 47.619 6.54 6.54 0.00 4.10
2532 2533 4.277515 AGTTCTTGCTTCTCTACATGCA 57.722 40.909 0.00 0.00 0.00 3.96
2533 2534 4.671250 GCAAGTTCTTGCTTCTCTACATGC 60.671 45.833 24.49 0.00 44.15 4.06
2585 2586 4.428294 AATCGATGTCCATGGTCTCAAT 57.572 40.909 12.58 0.00 0.00 2.57
2634 2635 5.193527 TCAACCATGATTTAGGAATCCCAGA 59.806 40.000 0.00 0.00 40.79 3.86
2653 2654 2.562298 TCTCATTGGCACCAATTCAACC 59.438 45.455 12.25 0.00 43.32 3.77
2669 2670 2.622452 CCCCAAGCAATTCCAGTCTCAT 60.622 50.000 0.00 0.00 0.00 2.90
2706 2707 4.679654 GCCTTAACAAACCTTTTCACATCG 59.320 41.667 0.00 0.00 0.00 3.84
2728 2729 4.691216 AGCAGTAACTAACAAAGCTGTAGC 59.309 41.667 0.00 0.00 42.49 3.58
2734 2735 6.969828 ACTATCAGCAGTAACTAACAAAGC 57.030 37.500 0.00 0.00 0.00 3.51
2736 2737 7.307751 GCACAACTATCAGCAGTAACTAACAAA 60.308 37.037 0.00 0.00 0.00 2.83
2793 2798 6.382859 AGTTAAAAGCTTTTCTTCTTTCCCCA 59.617 34.615 27.03 3.17 32.88 4.96
2794 2799 6.817184 AGTTAAAAGCTTTTCTTCTTTCCCC 58.183 36.000 27.03 5.23 32.88 4.81
2908 3099 2.662006 TCAGATCGACAGCTCAAAGG 57.338 50.000 0.00 0.00 0.00 3.11
2930 3121 1.522258 GCAACAAAAGTCCATTGCACG 59.478 47.619 3.06 0.00 45.38 5.34
2987 3178 8.686334 AGCCTTGTAAACCTCAATATTACAATG 58.314 33.333 9.85 8.80 44.16 2.82
2988 3179 8.686334 CAGCCTTGTAAACCTCAATATTACAAT 58.314 33.333 9.85 0.00 44.16 2.71
3015 3206 5.177511 TGCTCATTTTTGTTAGAGTGACGAG 59.822 40.000 0.00 0.00 0.00 4.18
3093 3285 8.668510 TGAAGAGATAGTCAATTAGAAATGCC 57.331 34.615 0.00 0.00 0.00 4.40
3142 3334 8.971073 AGTCTAAGCATTTAAAATGGTATTGCT 58.029 29.630 4.73 4.73 40.43 3.91
3161 5749 7.639945 ACGATTTTTCAGGTTTTCAGTCTAAG 58.360 34.615 0.00 0.00 0.00 2.18
3191 5779 8.825667 TGGAAACCTTTTTAAGACAAATATGC 57.174 30.769 0.00 0.00 0.00 3.14
3290 5879 9.667107 TCAGAATAAGTAACATTTCGGAAATCT 57.333 29.630 12.86 4.99 0.00 2.40
3305 5894 6.663953 ACTAGCACTCCAGTTCAGAATAAGTA 59.336 38.462 0.00 0.00 0.00 2.24
3325 5918 6.542370 TCCTGCACCAAATCTATTTTACTAGC 59.458 38.462 0.00 0.00 0.00 3.42
3334 5927 3.264193 TGTGTCTCCTGCACCAAATCTAT 59.736 43.478 0.00 0.00 36.11 1.98
3354 5947 8.455899 TGCAGAAGCCCTTAATTAGGAAATTGT 61.456 37.037 0.00 0.00 44.43 2.71
3355 5948 6.127366 TGCAGAAGCCCTTAATTAGGAAATTG 60.127 38.462 0.00 0.00 44.43 2.32
3356 5949 5.957774 TGCAGAAGCCCTTAATTAGGAAATT 59.042 36.000 0.00 0.00 44.43 1.82
3358 5951 4.929479 TGCAGAAGCCCTTAATTAGGAAA 58.071 39.130 0.00 0.00 44.43 3.13
3359 5952 4.584638 TGCAGAAGCCCTTAATTAGGAA 57.415 40.909 0.00 0.00 44.43 3.36
3360 5953 4.584638 TTGCAGAAGCCCTTAATTAGGA 57.415 40.909 0.00 0.00 44.43 2.94
3382 5985 1.811965 CAAGATGCATCCCGTCACAAA 59.188 47.619 23.06 0.00 31.60 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.