Multiple sequence alignment - TraesCS3A01G300400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G300400 chr3A 100.000 4157 0 0 1 4157 534466453 534470609 0.000000e+00 7677.0
1 TraesCS3A01G300400 chr3A 94.581 203 5 1 1028 1224 534449070 534449272 4.040000e-80 309.0
2 TraesCS3A01G300400 chr3A 89.394 132 13 1 3293 3423 16144163 16144032 9.250000e-37 165.0
3 TraesCS3A01G300400 chr3D 87.150 2825 191 74 564 3301 415684038 415681299 0.000000e+00 3048.0
4 TraesCS3A01G300400 chr3D 95.775 568 17 4 1 565 55748248 55747685 0.000000e+00 909.0
5 TraesCS3A01G300400 chr3D 94.718 568 27 2 1 566 580357498 580356932 0.000000e+00 880.0
6 TraesCS3A01G300400 chr3D 94.030 201 6 2 994 1194 415688948 415688754 2.430000e-77 300.0
7 TraesCS3A01G300400 chr7D 86.985 2720 180 82 564 3205 6379187 6376564 0.000000e+00 2902.0
8 TraesCS3A01G300400 chr7D 96.283 565 20 1 1 565 5573323 5572760 0.000000e+00 926.0
9 TraesCS3A01G300400 chr7D 95.944 567 20 2 1 565 618290829 618290264 0.000000e+00 917.0
10 TraesCS3A01G300400 chr7D 95.070 568 25 2 1 566 618295087 618294521 0.000000e+00 891.0
11 TraesCS3A01G300400 chr7D 95.070 568 25 2 1 566 618306259 618305693 0.000000e+00 891.0
12 TraesCS3A01G300400 chr7D 94.340 106 6 0 4050 4155 291501288 291501183 3.330000e-36 163.0
13 TraesCS3A01G300400 chr7D 94.340 106 3 2 4050 4155 350096402 350096300 4.300000e-35 159.0
14 TraesCS3A01G300400 chr3B 87.994 1391 101 34 564 1949 542513295 542511966 0.000000e+00 1583.0
15 TraesCS3A01G300400 chr3B 85.985 1213 84 40 2148 3301 542511718 542510533 0.000000e+00 1219.0
16 TraesCS3A01G300400 chr3B 87.113 194 19 5 3601 3789 542509831 542509639 9.050000e-52 215.0
17 TraesCS3A01G300400 chr3B 86.387 191 21 1 3862 4052 542509149 542508964 1.960000e-48 204.0
18 TraesCS3A01G300400 chr3B 97.170 106 3 0 4050 4155 24694165 24694270 3.300000e-41 180.0
19 TraesCS3A01G300400 chr3B 97.115 104 3 0 4051 4154 663554294 663554397 4.270000e-40 176.0
20 TraesCS3A01G300400 chr3B 90.840 131 11 1 1957 2087 542511928 542511799 1.540000e-39 174.0
21 TraesCS3A01G300400 chr3B 88.550 131 13 2 3294 3423 436445205 436445334 1.550000e-34 158.0
22 TraesCS3A01G300400 chr2D 97.703 566 13 0 1 566 547030524 547029959 0.000000e+00 974.0
23 TraesCS3A01G300400 chr2D 84.211 228 30 5 994 1219 13403090 13403313 2.520000e-52 217.0
24 TraesCS3A01G300400 chr2D 96.226 106 4 0 4050 4155 318335440 318335335 1.540000e-39 174.0
25 TraesCS3A01G300400 chr4D 96.466 566 19 1 1 566 96580745 96581309 0.000000e+00 933.0
26 TraesCS3A01G300400 chr4D 80.470 553 100 8 1340 1888 44422856 44423404 2.310000e-112 416.0
27 TraesCS3A01G300400 chr4D 88.727 275 25 3 1650 1924 299136749 299137017 8.610000e-87 331.0
28 TraesCS3A01G300400 chr4D 96.154 104 4 0 4052 4155 43834211 43834108 1.990000e-38 171.0
29 TraesCS3A01G300400 chr4D 95.283 106 5 0 4050 4155 338447144 338447249 7.150000e-38 169.0
30 TraesCS3A01G300400 chr4D 95.745 47 2 0 1957 2003 299137122 299137168 4.460000e-10 76.8
31 TraesCS3A01G300400 chr1D 95.238 567 25 1 1 565 389547733 389547167 0.000000e+00 896.0
32 TraesCS3A01G300400 chr1D 96.262 107 3 1 4050 4155 235996345 235996239 1.540000e-39 174.0
33 TraesCS3A01G300400 chr1D 90.323 124 12 0 3296 3419 436108213 436108090 3.330000e-36 163.0
34 TraesCS3A01G300400 chr1D 88.636 132 14 1 3293 3424 264129250 264129120 4.300000e-35 159.0
35 TraesCS3A01G300400 chr1D 87.591 137 16 1 3287 3423 304252140 304252275 1.550000e-34 158.0
36 TraesCS3A01G300400 chr1D 84.516 155 20 4 3296 3447 97537674 97537521 2.590000e-32 150.0
37 TraesCS3A01G300400 chr4B 79.024 553 108 8 1340 1888 64081881 64082429 5.080000e-99 372.0
38 TraesCS3A01G300400 chr4B 95.192 104 5 0 4052 4155 115094704 115094807 9.250000e-37 165.0
39 TraesCS3A01G300400 chr4B 88.321 137 12 4 3290 3424 383097928 383097794 1.200000e-35 161.0
40 TraesCS3A01G300400 chr4B 87.770 139 16 1 3293 3430 546272566 546272704 1.200000e-35 161.0
41 TraesCS3A01G300400 chr4B 84.426 122 15 4 1331 1449 592626973 592627093 2.630000e-22 117.0
42 TraesCS3A01G300400 chr6A 84.987 373 47 4 1538 1903 119767222 119766852 1.830000e-98 370.0
43 TraesCS3A01G300400 chr6A 89.062 192 18 2 1039 1227 119767491 119767300 6.950000e-58 235.0
44 TraesCS3A01G300400 chr6A 89.922 129 13 0 3297 3425 346345565 346345437 2.570000e-37 167.0
45 TraesCS3A01G300400 chr6A 94.444 108 6 0 4050 4157 453903405 453903298 2.570000e-37 167.0
46 TraesCS3A01G300400 chr4A 77.577 553 116 8 1340 1888 555517637 555517089 1.110000e-85 327.0
47 TraesCS3A01G300400 chr4A 96.296 108 4 0 4050 4157 36747248 36747141 1.190000e-40 178.0
48 TraesCS3A01G300400 chr4A 94.690 113 6 0 4045 4157 595062911 595062799 4.270000e-40 176.0
49 TraesCS3A01G300400 chr4A 96.262 107 4 0 4051 4157 637832594 637832700 4.270000e-40 176.0
50 TraesCS3A01G300400 chr4A 85.981 107 14 1 1340 1445 678128882 678128988 3.400000e-21 113.0
51 TraesCS3A01G300400 chrUn 77.076 554 117 10 1340 1888 183186544 183185996 1.120000e-80 311.0
52 TraesCS3A01G300400 chrUn 89.844 128 13 0 3296 3423 263456492 263456365 9.250000e-37 165.0
53 TraesCS3A01G300400 chrUn 89.062 128 14 0 3296 3423 207766859 207766732 4.300000e-35 159.0
54 TraesCS3A01G300400 chrUn 88.462 130 15 0 3296 3425 17025386 17025257 1.550000e-34 158.0
55 TraesCS3A01G300400 chrUn 88.462 130 15 0 3296 3425 17027619 17027490 1.550000e-34 158.0
56 TraesCS3A01G300400 chrUn 88.462 130 15 0 3296 3425 292131060 292131189 1.550000e-34 158.0
57 TraesCS3A01G300400 chrUn 88.462 130 15 0 3296 3425 302852130 302852259 1.550000e-34 158.0
58 TraesCS3A01G300400 chrUn 88.462 130 15 0 3296 3425 302859425 302859296 1.550000e-34 158.0
59 TraesCS3A01G300400 chrUn 88.281 128 15 0 3296 3423 100201290 100201163 2.000000e-33 154.0
60 TraesCS3A01G300400 chrUn 88.189 127 15 0 3297 3423 211980890 211981016 7.200000e-33 152.0
61 TraesCS3A01G300400 chr6D 78.390 472 67 21 2336 2787 99802253 99801797 1.470000e-69 274.0
62 TraesCS3A01G300400 chr6D 89.418 189 20 0 1039 1227 100388105 100387917 5.370000e-59 239.0
63 TraesCS3A01G300400 chr6D 96.154 104 4 0 4051 4154 312761098 312760995 1.990000e-38 171.0
64 TraesCS3A01G300400 chr6D 89.844 128 13 0 3296 3423 90116888 90116761 9.250000e-37 165.0
65 TraesCS3A01G300400 chr6D 89.764 127 13 0 3297 3423 379557154 379557280 3.330000e-36 163.0
66 TraesCS3A01G300400 chr2B 84.810 237 31 3 994 1230 140773869 140773638 2.500000e-57 233.0
67 TraesCS3A01G300400 chr2B 86.986 146 17 2 3287 3430 520150035 520149890 3.330000e-36 163.0
68 TraesCS3A01G300400 chr6B 82.692 260 45 0 1590 1849 184171964 184171705 8.990000e-57 231.0
69 TraesCS3A01G300400 chr6B 77.377 305 51 11 2149 2444 184169367 184169072 9.250000e-37 165.0
70 TraesCS3A01G300400 chr5A 97.196 107 3 0 4051 4157 29636803 29636909 9.180000e-42 182.0
71 TraesCS3A01G300400 chr5A 89.922 129 13 0 3296 3424 478892125 478891997 2.570000e-37 167.0
72 TraesCS3A01G300400 chr2A 96.330 109 4 0 4049 4157 377816567 377816675 3.300000e-41 180.0
73 TraesCS3A01G300400 chr1B 97.170 106 3 0 4050 4155 198150199 198150094 3.300000e-41 180.0
74 TraesCS3A01G300400 chr1B 96.226 106 4 0 4047 4152 392525783 392525888 1.540000e-39 174.0
75 TraesCS3A01G300400 chr1B 96.226 106 3 1 4050 4155 448301998 448301894 5.530000e-39 172.0
76 TraesCS3A01G300400 chr1B 89.394 132 14 0 3293 3424 681792492 681792361 2.570000e-37 167.0
77 TraesCS3A01G300400 chr1A 96.262 107 4 0 4051 4157 240674731 240674625 4.270000e-40 176.0
78 TraesCS3A01G300400 chr5D 89.922 129 13 0 3296 3424 460650657 460650529 2.570000e-37 167.0
79 TraesCS3A01G300400 chr5D 95.192 104 5 0 4052 4155 503764629 503764526 9.250000e-37 165.0
80 TraesCS3A01G300400 chr5D 87.943 141 15 2 3283 3423 527907690 527907828 9.250000e-37 165.0
81 TraesCS3A01G300400 chr5D 89.764 127 13 0 3297 3423 460652760 460652886 3.330000e-36 163.0
82 TraesCS3A01G300400 chr7B 87.857 140 15 2 3288 3425 745482573 745482712 3.330000e-36 163.0
83 TraesCS3A01G300400 chr7B 86.598 97 13 0 1342 1438 32344799 32344895 1.580000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G300400 chr3A 534466453 534470609 4156 False 7677.0 7677 100.0000 1 4157 1 chr3A.!!$F2 4156
1 TraesCS3A01G300400 chr3D 415681299 415684038 2739 True 3048.0 3048 87.1500 564 3301 1 chr3D.!!$R2 2737
2 TraesCS3A01G300400 chr3D 55747685 55748248 563 True 909.0 909 95.7750 1 565 1 chr3D.!!$R1 564
3 TraesCS3A01G300400 chr3D 580356932 580357498 566 True 880.0 880 94.7180 1 566 1 chr3D.!!$R4 565
4 TraesCS3A01G300400 chr7D 6376564 6379187 2623 True 2902.0 2902 86.9850 564 3205 1 chr7D.!!$R2 2641
5 TraesCS3A01G300400 chr7D 5572760 5573323 563 True 926.0 926 96.2830 1 565 1 chr7D.!!$R1 564
6 TraesCS3A01G300400 chr7D 618290264 618295087 4823 True 904.0 917 95.5070 1 566 2 chr7D.!!$R6 565
7 TraesCS3A01G300400 chr7D 618305693 618306259 566 True 891.0 891 95.0700 1 566 1 chr7D.!!$R5 565
8 TraesCS3A01G300400 chr3B 542508964 542513295 4331 True 679.0 1583 87.6638 564 4052 5 chr3B.!!$R1 3488
9 TraesCS3A01G300400 chr2D 547029959 547030524 565 True 974.0 974 97.7030 1 566 1 chr2D.!!$R2 565
10 TraesCS3A01G300400 chr4D 96580745 96581309 564 False 933.0 933 96.4660 1 566 1 chr4D.!!$F2 565
11 TraesCS3A01G300400 chr4D 44422856 44423404 548 False 416.0 416 80.4700 1340 1888 1 chr4D.!!$F1 548
12 TraesCS3A01G300400 chr1D 389547167 389547733 566 True 896.0 896 95.2380 1 565 1 chr1D.!!$R4 564
13 TraesCS3A01G300400 chr4B 64081881 64082429 548 False 372.0 372 79.0240 1340 1888 1 chr4B.!!$F1 548
14 TraesCS3A01G300400 chr6A 119766852 119767491 639 True 302.5 370 87.0245 1039 1903 2 chr6A.!!$R3 864
15 TraesCS3A01G300400 chr4A 555517089 555517637 548 True 327.0 327 77.5770 1340 1888 1 chr4A.!!$R2 548
16 TraesCS3A01G300400 chrUn 183185996 183186544 548 True 311.0 311 77.0760 1340 1888 1 chrUn.!!$R2 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 4361 0.174845 CGGCCAGAGATACACCGAAA 59.825 55.0 2.24 0.0 46.71 3.46 F
1325 5641 0.098025 CGTGTGGTTTGACAAGCGTT 59.902 50.0 0.00 0.0 32.63 4.84 F
1329 5645 0.453793 TGGTTTGACAAGCGTTGTGG 59.546 50.0 7.89 0.0 45.52 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2095 6492 1.000506 GGTCTCGGAACAAGCACTGTA 59.999 52.381 0.00 0.0 37.23 2.74 R
2456 6885 0.387622 CGTCGTCGGTGAAAAGCCTA 60.388 55.000 0.00 0.0 0.00 3.93 R
3298 7772 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.0 46.06 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 4361 0.174845 CGGCCAGAGATACACCGAAA 59.825 55.000 2.24 0.00 46.71 3.46
359 4626 1.409227 CGTCAGCAGCAGATCGTCAC 61.409 60.000 0.00 0.00 0.00 3.67
409 4676 3.428999 CGATCAGTACGTCCAACATCCTT 60.429 47.826 0.00 0.00 0.00 3.36
444 4711 5.119588 TGTTTCTACAGCTATTGTTACGTGC 59.880 40.000 0.00 0.00 41.29 5.34
448 4715 3.399330 ACAGCTATTGTTACGTGCTTGT 58.601 40.909 0.00 0.00 36.31 3.16
651 4933 1.008538 CAAACCTTGACCAGTGCGC 60.009 57.895 0.00 0.00 0.00 6.09
666 4948 4.335647 CGCCTGACCCAAGCACCT 62.336 66.667 0.00 0.00 0.00 4.00
678 4963 0.890542 AAGCACCTGAAGCGCATCAA 60.891 50.000 16.91 0.90 37.01 2.57
697 4982 0.249398 ACCCGCTCACAAGTCATACC 59.751 55.000 0.00 0.00 0.00 2.73
724 5009 6.394025 CGAAGCCTAGATAGTTAGGAAAGT 57.606 41.667 3.33 0.00 42.39 2.66
725 5010 7.507733 CGAAGCCTAGATAGTTAGGAAAGTA 57.492 40.000 3.33 0.00 42.39 2.24
760 5045 4.637771 GGGGTTCCGATGTTGGAG 57.362 61.111 0.00 0.00 39.72 3.86
768 5053 1.519455 CGATGTTGGAGTCTCGCCC 60.519 63.158 0.00 0.00 0.00 6.13
891 5180 3.978723 CTCGGCGTCAGGTCAGCAG 62.979 68.421 6.85 0.00 0.00 4.24
963 5252 4.494515 AAAAAGGCGTGAGGGGTC 57.505 55.556 0.00 0.00 0.00 4.46
965 5254 1.716028 AAAAAGGCGTGAGGGGTCCT 61.716 55.000 0.00 0.00 36.03 3.85
1238 5537 0.263765 TTCGGCCTCCTGGTACCTAT 59.736 55.000 14.36 0.00 35.27 2.57
1239 5538 0.263765 TCGGCCTCCTGGTACCTATT 59.736 55.000 14.36 0.00 35.27 1.73
1247 5546 5.078256 CCTCCTGGTACCTATTACTACCTG 58.922 50.000 14.36 0.00 34.52 4.00
1256 5555 7.013655 GGTACCTATTACTACCTGACAAATCGA 59.986 40.741 4.06 0.00 31.20 3.59
1297 5604 9.483062 CGATTCTTTCATTAAACAAGCTAGAAG 57.517 33.333 0.00 0.00 0.00 2.85
1298 5605 9.283420 GATTCTTTCATTAAACAAGCTAGAAGC 57.717 33.333 0.00 0.00 42.84 3.86
1299 5606 7.145932 TCTTTCATTAAACAAGCTAGAAGCC 57.854 36.000 0.00 0.00 43.77 4.35
1301 5608 8.100791 TCTTTCATTAAACAAGCTAGAAGCCTA 58.899 33.333 0.00 0.00 43.77 3.93
1302 5609 7.849804 TTCATTAAACAAGCTAGAAGCCTAG 57.150 36.000 0.00 0.00 43.77 3.02
1303 5610 7.182817 TCATTAAACAAGCTAGAAGCCTAGA 57.817 36.000 0.00 0.00 43.77 2.43
1307 5614 2.166664 ACAAGCTAGAAGCCTAGAACCG 59.833 50.000 0.00 0.00 43.77 4.44
1323 5639 1.010125 CCGTGTGGTTTGACAAGCG 60.010 57.895 0.00 0.00 32.63 4.68
1324 5640 1.711060 CCGTGTGGTTTGACAAGCGT 61.711 55.000 0.00 0.00 32.63 5.07
1325 5641 0.098025 CGTGTGGTTTGACAAGCGTT 59.902 50.000 0.00 0.00 32.63 4.84
1326 5642 1.544686 GTGTGGTTTGACAAGCGTTG 58.455 50.000 0.00 0.00 32.63 4.10
1328 5644 1.135546 TGTGGTTTGACAAGCGTTGTG 60.136 47.619 7.89 0.00 45.52 3.33
1329 5645 0.453793 TGGTTTGACAAGCGTTGTGG 59.546 50.000 7.89 0.00 45.52 4.17
1330 5646 0.869880 GGTTTGACAAGCGTTGTGGC 60.870 55.000 7.89 0.00 45.52 5.01
1781 6103 2.092882 GCGCAGTTCCTGTACGTCC 61.093 63.158 0.30 0.00 33.43 4.79
1889 6211 2.109126 GCCGTCATGCTCTGGTTCC 61.109 63.158 0.00 0.00 0.00 3.62
1890 6212 1.599047 CCGTCATGCTCTGGTTCCT 59.401 57.895 0.00 0.00 0.00 3.36
1891 6213 0.824109 CCGTCATGCTCTGGTTCCTA 59.176 55.000 0.00 0.00 0.00 2.94
1892 6214 1.471676 CCGTCATGCTCTGGTTCCTAC 60.472 57.143 0.00 0.00 0.00 3.18
1893 6215 1.478510 CGTCATGCTCTGGTTCCTACT 59.521 52.381 0.00 0.00 0.00 2.57
1894 6216 2.688446 CGTCATGCTCTGGTTCCTACTA 59.312 50.000 0.00 0.00 0.00 1.82
1895 6217 3.489398 CGTCATGCTCTGGTTCCTACTAC 60.489 52.174 0.00 0.00 0.00 2.73
1926 6248 4.679373 TGCTTCCTGCTCTAATTAGGAG 57.321 45.455 12.54 9.46 41.33 3.69
1927 6249 4.033709 TGCTTCCTGCTCTAATTAGGAGT 58.966 43.478 12.54 0.00 41.33 3.85
1928 6250 5.208890 TGCTTCCTGCTCTAATTAGGAGTA 58.791 41.667 12.54 7.40 41.33 2.59
1929 6251 5.841237 TGCTTCCTGCTCTAATTAGGAGTAT 59.159 40.000 12.54 0.00 41.33 2.12
1930 6252 6.015010 TGCTTCCTGCTCTAATTAGGAGTATC 60.015 42.308 12.54 0.00 41.33 2.24
1931 6253 6.210584 GCTTCCTGCTCTAATTAGGAGTATCT 59.789 42.308 12.54 0.00 41.33 1.98
1932 6254 7.394923 GCTTCCTGCTCTAATTAGGAGTATCTA 59.605 40.741 12.54 0.00 41.33 1.98
1933 6255 8.638629 TTCCTGCTCTAATTAGGAGTATCTAC 57.361 38.462 12.54 0.00 41.33 2.59
1934 6256 7.756614 TCCTGCTCTAATTAGGAGTATCTACA 58.243 38.462 12.54 1.74 35.76 2.74
1935 6257 8.394822 TCCTGCTCTAATTAGGAGTATCTACAT 58.605 37.037 12.54 0.00 35.76 2.29
1949 6271 8.969267 GGAGTATCTACATTACAGACGAAATTG 58.031 37.037 0.00 0.00 33.73 2.32
1951 6273 9.302345 AGTATCTACATTACAGACGAAATTGTG 57.698 33.333 0.00 0.00 0.00 3.33
1952 6274 9.297586 GTATCTACATTACAGACGAAATTGTGA 57.702 33.333 0.00 0.00 0.00 3.58
1954 6276 7.375834 TCTACATTACAGACGAAATTGTGAGT 58.624 34.615 0.00 0.00 0.00 3.41
1955 6277 8.517056 TCTACATTACAGACGAAATTGTGAGTA 58.483 33.333 0.00 0.00 0.00 2.59
1966 6323 8.234136 ACGAAATTGTGAGTATAGGAGTGATA 57.766 34.615 0.00 0.00 0.00 2.15
1968 6325 9.698309 CGAAATTGTGAGTATAGGAGTGATATT 57.302 33.333 0.00 0.00 0.00 1.28
2025 6382 2.945668 GTGATCATTCTAGTGGGTTGCC 59.054 50.000 0.00 0.00 0.00 4.52
2073 6430 1.757118 CCGTCTCCATATGGTCAGTGT 59.243 52.381 21.28 0.00 36.34 3.55
2086 6483 4.673968 TGGTCAGTGTACCAGTAATCTCT 58.326 43.478 9.55 0.00 44.68 3.10
2087 6484 4.462834 TGGTCAGTGTACCAGTAATCTCTG 59.537 45.833 9.55 0.00 44.68 3.35
2088 6485 4.705507 GGTCAGTGTACCAGTAATCTCTGA 59.294 45.833 6.82 0.00 39.50 3.27
2095 6492 6.010850 TGTACCAGTAATCTCTGACTGACTT 58.989 40.000 3.64 0.00 44.88 3.01
2123 6520 3.804063 GCTTGTTCCGAGACCTCTTCTTT 60.804 47.826 0.00 0.00 33.22 2.52
2125 6522 5.539048 CTTGTTCCGAGACCTCTTCTTTAA 58.461 41.667 0.00 0.00 33.22 1.52
2138 6535 9.274206 GACCTCTTCTTTAATAATTCGCCTAAT 57.726 33.333 0.00 0.00 0.00 1.73
2188 6585 6.398095 CATGAACTACAACATCTGGACACTA 58.602 40.000 0.00 0.00 0.00 2.74
2200 6597 4.028131 TCTGGACACTAATGGTATCCGTT 58.972 43.478 0.00 0.00 36.61 4.44
2215 6612 1.732683 CGTTGGTTTCAATGCCGCC 60.733 57.895 0.00 0.00 35.10 6.13
2233 6630 4.130281 GTGAGGTACGCGCGCAAC 62.130 66.667 32.58 27.13 0.00 4.17
2307 6718 7.128077 ACATTCCAAGAAATAATGACCCTGAT 58.872 34.615 0.00 0.00 0.00 2.90
2313 6724 6.520021 AGAAATAATGACCCTGATCCATCA 57.480 37.500 0.00 0.00 35.16 3.07
2316 6745 2.581216 ATGACCCTGATCCATCATGC 57.419 50.000 0.00 0.00 36.02 4.06
2430 6859 1.859564 CTCGTCTTCACGCTCGTCG 60.860 63.158 0.00 0.00 46.28 5.12
2456 6885 4.774503 GCGAGGAAGCAGCTGCCT 62.775 66.667 34.39 23.78 43.50 4.75
2480 6909 0.662374 TTTTCACCGACGACGAGCTC 60.662 55.000 9.28 2.73 42.66 4.09
2543 6972 1.285962 ACCATAGGCCTCAACAGCATT 59.714 47.619 9.68 0.00 0.00 3.56
2573 7003 6.457934 CGGTGCTATCAGGTAGGTATTATACG 60.458 46.154 0.00 0.00 0.00 3.06
2610 7040 7.884816 TCAAGAACGTTATCTGGAAAGTAAG 57.115 36.000 0.00 0.00 0.00 2.34
2627 7057 5.931441 AGTAAGTCTGTTGACAGCAAATC 57.069 39.130 6.27 0.00 45.20 2.17
2628 7058 3.885484 AAGTCTGTTGACAGCAAATCG 57.115 42.857 6.27 0.00 45.20 3.34
2629 7059 3.111853 AGTCTGTTGACAGCAAATCGA 57.888 42.857 6.27 0.00 45.20 3.59
2652 7082 1.696988 TGATGTGACGTGTGTGATCG 58.303 50.000 0.00 0.00 0.00 3.69
2752 7182 4.247380 CTCATCGGCCTGCCCCTC 62.247 72.222 0.00 0.00 0.00 4.30
2799 7231 2.542432 TTAACGCAACGGTAAGGCC 58.458 52.632 0.00 0.00 33.97 5.19
2826 7258 0.616111 ACAGTAGTCCAGGCTCCAGG 60.616 60.000 0.00 0.00 0.00 4.45
2827 7259 0.324738 CAGTAGTCCAGGCTCCAGGA 60.325 60.000 0.00 0.00 0.00 3.86
2828 7260 0.032615 AGTAGTCCAGGCTCCAGGAG 60.033 60.000 12.81 12.81 32.18 3.69
2829 7261 0.033011 GTAGTCCAGGCTCCAGGAGA 60.033 60.000 21.89 0.00 32.18 3.71
2830 7262 0.033011 TAGTCCAGGCTCCAGGAGAC 60.033 60.000 21.89 18.92 38.12 3.36
2833 7265 1.001503 CCAGGCTCCAGGAGACTCT 59.998 63.158 23.73 11.41 46.38 3.24
2834 7266 1.042559 CCAGGCTCCAGGAGACTCTC 61.043 65.000 23.73 1.80 46.38 3.20
2835 7267 0.033208 CAGGCTCCAGGAGACTCTCT 60.033 60.000 23.73 0.00 46.38 3.10
2836 7268 0.033208 AGGCTCCAGGAGACTCTCTG 60.033 60.000 20.71 11.82 46.38 3.35
2837 7269 1.675720 GGCTCCAGGAGACTCTCTGC 61.676 65.000 21.89 2.28 40.21 4.26
2851 7283 5.469421 AGACTCTCTGCTGTTCTGATTTTTG 59.531 40.000 0.00 0.00 0.00 2.44
2852 7284 4.023365 ACTCTCTGCTGTTCTGATTTTTGC 60.023 41.667 0.00 0.00 0.00 3.68
2854 7286 2.030893 TCTGCTGTTCTGATTTTTGCCG 60.031 45.455 0.00 0.00 0.00 5.69
2855 7287 1.000385 TGCTGTTCTGATTTTTGCCGG 60.000 47.619 0.00 0.00 0.00 6.13
2856 7288 1.669795 GCTGTTCTGATTTTTGCCGGG 60.670 52.381 2.18 0.00 0.00 5.73
2857 7289 1.885887 CTGTTCTGATTTTTGCCGGGA 59.114 47.619 2.18 0.00 0.00 5.14
2858 7290 1.885887 TGTTCTGATTTTTGCCGGGAG 59.114 47.619 2.18 0.00 0.00 4.30
2859 7291 2.159382 GTTCTGATTTTTGCCGGGAGA 58.841 47.619 2.18 0.00 0.00 3.71
2861 7293 2.870175 TCTGATTTTTGCCGGGAGAAA 58.130 42.857 14.01 14.01 0.00 2.52
2862 7294 3.430453 TCTGATTTTTGCCGGGAGAAAT 58.570 40.909 21.98 21.98 0.00 2.17
2863 7295 3.193267 TCTGATTTTTGCCGGGAGAAATG 59.807 43.478 25.86 14.24 0.00 2.32
2864 7296 2.270923 GATTTTTGCCGGGAGAAATGC 58.729 47.619 25.86 14.73 0.00 3.56
2868 7300 0.316841 TTGCCGGGAGAAATGCAAAC 59.683 50.000 2.18 0.00 40.46 2.93
2871 7305 1.154035 CGGGAGAAATGCAAACGGC 60.154 57.895 0.00 0.00 45.13 5.68
2948 7382 1.621317 TGCAGACCGTCATCCTGTTTA 59.379 47.619 0.40 0.00 0.00 2.01
2974 7408 3.094572 CCTCTTCAGAACCAAATGGCAT 58.905 45.455 0.00 0.00 39.32 4.40
2987 7421 5.777732 ACCAAATGGCATAAAGAGGTAACAA 59.222 36.000 0.00 0.00 39.32 2.83
2988 7422 6.268847 ACCAAATGGCATAAAGAGGTAACAAA 59.731 34.615 0.00 0.00 39.32 2.83
2989 7423 6.589907 CCAAATGGCATAAAGAGGTAACAAAC 59.410 38.462 0.00 0.00 41.41 2.93
2991 7425 5.699097 TGGCATAAAGAGGTAACAAACAC 57.301 39.130 0.00 0.00 41.41 3.32
2992 7426 4.214545 TGGCATAAAGAGGTAACAAACACG 59.785 41.667 0.00 0.00 41.41 4.49
2994 7428 4.083484 GCATAAAGAGGTAACAAACACGCT 60.083 41.667 0.00 0.00 41.41 5.07
2995 7429 5.562113 GCATAAAGAGGTAACAAACACGCTT 60.562 40.000 0.00 0.00 41.41 4.68
2996 7430 3.963383 AAGAGGTAACAAACACGCTTG 57.037 42.857 0.00 0.00 41.41 4.01
2999 7433 2.610374 GAGGTAACAAACACGCTTGACA 59.390 45.455 0.00 0.00 41.41 3.58
3000 7434 3.011119 AGGTAACAAACACGCTTGACAA 58.989 40.909 0.00 0.00 41.41 3.18
3001 7435 3.440872 AGGTAACAAACACGCTTGACAAA 59.559 39.130 0.00 0.00 41.41 2.83
3002 7436 3.544682 GGTAACAAACACGCTTGACAAAC 59.455 43.478 0.00 0.00 0.00 2.93
3003 7437 3.569250 AACAAACACGCTTGACAAACT 57.431 38.095 0.00 0.00 0.00 2.66
3004 7438 4.688511 AACAAACACGCTTGACAAACTA 57.311 36.364 0.00 0.00 0.00 2.24
3009 7453 2.538449 ACACGCTTGACAAACTAGTTCG 59.462 45.455 8.95 8.71 0.00 3.95
3015 7459 4.962151 GCTTGACAAACTAGTTCGAACAAC 59.038 41.667 28.78 4.15 0.00 3.32
3024 7468 6.345920 ACTAGTTCGAACAACTGAAAAGTG 57.654 37.500 28.78 7.79 0.00 3.16
3025 7469 5.873164 ACTAGTTCGAACAACTGAAAAGTGT 59.127 36.000 28.78 7.04 0.00 3.55
3026 7470 7.037438 ACTAGTTCGAACAACTGAAAAGTGTA 58.963 34.615 28.78 7.80 0.00 2.90
3027 7471 6.730960 AGTTCGAACAACTGAAAAGTGTAA 57.269 33.333 28.78 0.00 0.00 2.41
3061 7518 8.515695 TGATCTTTGATTTCTGATGCACTAAT 57.484 30.769 0.00 0.00 0.00 1.73
3189 7646 4.629115 GCCTGGTTGCGCACACAC 62.629 66.667 11.12 5.71 0.00 3.82
3286 7760 6.194967 TGAGAGGGACTACAGTAATCATTCA 58.805 40.000 0.00 0.00 41.55 2.57
3293 7767 7.068348 GGGACTACAGTAATCATTCAGTGTAGA 59.932 40.741 18.61 0.00 45.47 2.59
3301 7775 8.634444 AGTAATCATTCAGTGTAGATGTACTCC 58.366 37.037 1.30 0.00 0.00 3.85
3302 7776 5.854010 TCATTCAGTGTAGATGTACTCCC 57.146 43.478 1.30 0.00 0.00 4.30
3303 7777 5.519808 TCATTCAGTGTAGATGTACTCCCT 58.480 41.667 1.30 0.00 0.00 4.20
3304 7778 5.594725 TCATTCAGTGTAGATGTACTCCCTC 59.405 44.000 1.30 0.00 0.00 4.30
3305 7779 3.899726 TCAGTGTAGATGTACTCCCTCC 58.100 50.000 1.30 0.00 0.00 4.30
3306 7780 2.619177 CAGTGTAGATGTACTCCCTCCG 59.381 54.545 1.30 0.00 0.00 4.63
3307 7781 2.241685 AGTGTAGATGTACTCCCTCCGT 59.758 50.000 1.30 0.00 0.00 4.69
3308 7782 2.617774 GTGTAGATGTACTCCCTCCGTC 59.382 54.545 1.30 0.00 0.00 4.79
3309 7783 2.228925 GTAGATGTACTCCCTCCGTCC 58.771 57.143 0.00 0.00 0.00 4.79
3310 7784 0.465824 AGATGTACTCCCTCCGTCCG 60.466 60.000 0.00 0.00 0.00 4.79
3311 7785 1.453762 GATGTACTCCCTCCGTCCGG 61.454 65.000 0.00 0.00 0.00 5.14
3312 7786 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
3313 7787 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3314 7788 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3315 7789 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3316 7790 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3317 7791 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3318 7792 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3319 7793 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3320 7794 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3321 7795 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3322 7796 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3323 7797 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3324 7798 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3325 7799 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3326 7800 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3327 7801 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3328 7802 6.918800 CCGTCCGGAAATACTTGTCATCAAG 61.919 48.000 5.23 6.44 45.65 3.02
3329 7803 8.994207 CCGTCCGGAAATACTTGTCATCAAGA 62.994 46.154 5.23 0.31 44.37 3.02
3417 7891 9.502091 TTGATAATAAGTATTTCCGGATGAAGG 57.498 33.333 4.15 0.00 33.63 3.46
3418 7892 8.100791 TGATAATAAGTATTTCCGGATGAAGGG 58.899 37.037 4.15 0.00 33.63 3.95
3419 7893 5.906772 ATAAGTATTTCCGGATGAAGGGT 57.093 39.130 4.15 0.00 33.63 4.34
3420 7894 3.560636 AGTATTTCCGGATGAAGGGTG 57.439 47.619 4.15 0.00 33.63 4.61
3421 7895 2.844348 AGTATTTCCGGATGAAGGGTGT 59.156 45.455 4.15 0.00 33.63 4.16
3422 7896 4.035112 AGTATTTCCGGATGAAGGGTGTA 58.965 43.478 4.15 0.00 33.63 2.90
3423 7897 4.658901 AGTATTTCCGGATGAAGGGTGTAT 59.341 41.667 4.15 0.00 33.63 2.29
3424 7898 4.519906 ATTTCCGGATGAAGGGTGTATT 57.480 40.909 4.15 0.00 33.63 1.89
3425 7899 3.553828 TTCCGGATGAAGGGTGTATTC 57.446 47.619 4.15 0.00 0.00 1.75
3426 7900 2.759355 TCCGGATGAAGGGTGTATTCT 58.241 47.619 0.00 0.00 0.00 2.40
3427 7901 3.112263 TCCGGATGAAGGGTGTATTCTT 58.888 45.455 0.00 0.00 0.00 2.52
3428 7902 3.521937 TCCGGATGAAGGGTGTATTCTTT 59.478 43.478 0.00 0.00 0.00 2.52
3436 7910 5.550403 TGAAGGGTGTATTCTTTAAGGGTCT 59.450 40.000 0.00 0.00 0.00 3.85
3440 7914 5.646793 GGGTGTATTCTTTAAGGGTCTTCAC 59.353 44.000 0.00 0.00 0.00 3.18
3477 7952 8.729805 AATCTCTTGAAGCATAAGGTTAGAAG 57.270 34.615 0.00 0.00 35.19 2.85
3491 7966 4.458642 AGGTTAGAAGTTAGTCTCGTGGTC 59.541 45.833 0.00 0.00 0.00 4.02
3499 7974 3.680786 TCTCGTGGTCTGCGGTGG 61.681 66.667 0.00 0.00 0.00 4.61
3500 7975 4.742201 CTCGTGGTCTGCGGTGGG 62.742 72.222 0.00 0.00 0.00 4.61
3524 7999 2.391389 GGCGCGATGCTAATAGGCC 61.391 63.158 12.10 0.00 45.43 5.19
3538 8013 1.113517 TAGGCCGATGTCTAGGGTGC 61.114 60.000 0.00 0.00 0.00 5.01
3550 8029 3.630312 GTCTAGGGTGCACTTTTGTTTGA 59.370 43.478 17.98 2.23 0.00 2.69
3556 8035 3.803778 GGTGCACTTTTGTTTGATCTTGG 59.196 43.478 17.98 0.00 0.00 3.61
3557 8036 4.432712 GTGCACTTTTGTTTGATCTTGGT 58.567 39.130 10.32 0.00 0.00 3.67
3562 8041 6.978080 GCACTTTTGTTTGATCTTGGTTTCTA 59.022 34.615 0.00 0.00 0.00 2.10
3574 8053 6.688073 TCTTGGTTTCTAGAGGAGTTTGAT 57.312 37.500 0.00 0.00 0.00 2.57
3575 8054 6.702329 TCTTGGTTTCTAGAGGAGTTTGATC 58.298 40.000 0.00 0.00 0.00 2.92
3577 8056 6.627087 TGGTTTCTAGAGGAGTTTGATCAT 57.373 37.500 0.00 0.00 0.00 2.45
3578 8057 7.020827 TGGTTTCTAGAGGAGTTTGATCATT 57.979 36.000 0.00 0.00 0.00 2.57
3580 8059 7.944554 TGGTTTCTAGAGGAGTTTGATCATTTT 59.055 33.333 0.00 0.00 0.00 1.82
3581 8060 8.239998 GGTTTCTAGAGGAGTTTGATCATTTTG 58.760 37.037 0.00 0.00 0.00 2.44
3582 8061 8.787852 GTTTCTAGAGGAGTTTGATCATTTTGT 58.212 33.333 0.00 0.00 0.00 2.83
3584 8063 8.924511 TCTAGAGGAGTTTGATCATTTTGTTT 57.075 30.769 0.00 0.00 0.00 2.83
3585 8064 9.354673 TCTAGAGGAGTTTGATCATTTTGTTTT 57.645 29.630 0.00 0.00 0.00 2.43
3586 8065 9.403110 CTAGAGGAGTTTGATCATTTTGTTTTG 57.597 33.333 0.00 0.00 0.00 2.44
3587 8066 8.010733 AGAGGAGTTTGATCATTTTGTTTTGA 57.989 30.769 0.00 0.00 0.00 2.69
3590 8069 7.922811 AGGAGTTTGATCATTTTGTTTTGAGAC 59.077 33.333 0.00 0.00 0.00 3.36
3591 8070 7.922811 GGAGTTTGATCATTTTGTTTTGAGACT 59.077 33.333 0.00 0.00 0.00 3.24
3681 8689 4.459337 CACTGATAAACCAAAGAACCTCCC 59.541 45.833 0.00 0.00 0.00 4.30
3689 8697 4.777463 ACCAAAGAACCTCCCATATAACG 58.223 43.478 0.00 0.00 0.00 3.18
3695 8703 2.690840 ACCTCCCATATAACGCTCCTT 58.309 47.619 0.00 0.00 0.00 3.36
3709 8717 1.927895 CTCCTTGCGACATGTAGGAC 58.072 55.000 10.49 0.00 33.40 3.85
3710 8718 1.478510 CTCCTTGCGACATGTAGGACT 59.521 52.381 10.49 0.00 33.40 3.85
3711 8719 1.204704 TCCTTGCGACATGTAGGACTG 59.795 52.381 10.49 2.59 32.00 3.51
3712 8720 1.066858 CCTTGCGACATGTAGGACTGT 60.067 52.381 6.55 0.00 0.00 3.55
3713 8721 2.263077 CTTGCGACATGTAGGACTGTC 58.737 52.381 8.11 0.00 38.69 3.51
3717 8725 1.630148 GACATGTAGGACTGTCGCAC 58.370 55.000 0.00 2.84 33.14 5.34
3719 8727 0.802222 CATGTAGGACTGTCGCACCG 60.802 60.000 1.07 0.00 0.00 4.94
3720 8728 1.945354 ATGTAGGACTGTCGCACCGG 61.945 60.000 0.00 0.00 0.00 5.28
3761 8773 1.373497 AGTCAGCCGTTTCTCGCTG 60.373 57.895 2.66 2.66 41.38 5.18
3769 8781 2.724839 GCCGTTTCTCGCTGTTTATGTG 60.725 50.000 0.00 0.00 38.35 3.21
3789 8801 4.887071 TGTGCCAGATGTTGTACTCTTTTT 59.113 37.500 0.00 0.00 0.00 1.94
3790 8802 5.215160 GTGCCAGATGTTGTACTCTTTTTG 58.785 41.667 0.00 0.00 0.00 2.44
3791 8803 4.887071 TGCCAGATGTTGTACTCTTTTTGT 59.113 37.500 0.00 0.00 0.00 2.83
3792 8804 5.008613 TGCCAGATGTTGTACTCTTTTTGTC 59.991 40.000 0.00 0.00 0.00 3.18
3793 8805 5.239525 GCCAGATGTTGTACTCTTTTTGTCT 59.760 40.000 0.00 0.00 0.00 3.41
3794 8806 6.426937 GCCAGATGTTGTACTCTTTTTGTCTA 59.573 38.462 0.00 0.00 0.00 2.59
3795 8807 7.041372 GCCAGATGTTGTACTCTTTTTGTCTAA 60.041 37.037 0.00 0.00 0.00 2.10
3796 8808 8.836413 CCAGATGTTGTACTCTTTTTGTCTAAA 58.164 33.333 0.00 0.00 0.00 1.85
3797 8809 9.869844 CAGATGTTGTACTCTTTTTGTCTAAAG 57.130 33.333 0.00 0.00 36.64 1.85
3798 8810 9.832445 AGATGTTGTACTCTTTTTGTCTAAAGA 57.168 29.630 0.00 0.00 40.76 2.52
3843 8855 9.213799 TGGGTTTAACAAAAATCATTCTTATGC 57.786 29.630 0.00 0.00 0.00 3.14
3872 9330 6.349243 TCGGTTTACTCCAGTTTATCTTCA 57.651 37.500 0.00 0.00 0.00 3.02
3906 9364 9.624697 TGTTAATGAAAAGTGCACATAAATCTC 57.375 29.630 21.04 5.94 0.00 2.75
3909 9367 6.169419 TGAAAAGTGCACATAAATCTCTCG 57.831 37.500 21.04 0.00 0.00 4.04
3912 9370 6.893958 AAAGTGCACATAAATCTCTCGTAG 57.106 37.500 21.04 0.00 0.00 3.51
3915 9373 4.442733 GTGCACATAAATCTCTCGTAGCTC 59.557 45.833 13.17 0.00 0.00 4.09
3918 9376 4.907010 CACATAAATCTCTCGTAGCTCGAC 59.093 45.833 0.00 0.00 44.01 4.20
3933 9391 3.447586 AGCTCGACATTGCTCTAACCTAA 59.552 43.478 0.00 0.00 33.90 2.69
3937 9395 3.369052 CGACATTGCTCTAACCTAACCCA 60.369 47.826 0.00 0.00 0.00 4.51
3939 9397 5.452776 CGACATTGCTCTAACCTAACCCATA 60.453 44.000 0.00 0.00 0.00 2.74
3946 9404 5.043737 TCTAACCTAACCCATACCAATGC 57.956 43.478 0.00 0.00 0.00 3.56
3947 9405 4.724798 TCTAACCTAACCCATACCAATGCT 59.275 41.667 0.00 0.00 0.00 3.79
3948 9406 4.331159 AACCTAACCCATACCAATGCTT 57.669 40.909 0.00 0.00 0.00 3.91
3949 9407 4.331159 ACCTAACCCATACCAATGCTTT 57.669 40.909 0.00 0.00 0.00 3.51
3950 9408 4.683643 ACCTAACCCATACCAATGCTTTT 58.316 39.130 0.00 0.00 0.00 2.27
3951 9409 5.090845 ACCTAACCCATACCAATGCTTTTT 58.909 37.500 0.00 0.00 0.00 1.94
4029 9487 3.565482 CCCATTATCGACTTGGACATTGG 59.435 47.826 10.80 0.00 31.94 3.16
4038 9496 2.311542 ACTTGGACATTGGAATAGCCCA 59.688 45.455 0.00 0.00 34.97 5.36
4078 9536 3.520569 TGAAACAAGGCAAAAGACTTGC 58.479 40.909 10.80 0.78 46.03 4.01
4086 9544 3.177997 GCAAAAGACTTGCCCTTTTCA 57.822 42.857 0.00 0.00 40.62 2.69
4087 9545 3.732212 GCAAAAGACTTGCCCTTTTCAT 58.268 40.909 0.00 0.00 40.62 2.57
4088 9546 4.129380 GCAAAAGACTTGCCCTTTTCATT 58.871 39.130 0.00 0.00 40.62 2.57
4089 9547 4.576053 GCAAAAGACTTGCCCTTTTCATTT 59.424 37.500 0.00 0.00 40.62 2.32
4090 9548 5.757808 GCAAAAGACTTGCCCTTTTCATTTA 59.242 36.000 0.00 0.00 40.62 1.40
4091 9549 6.259829 GCAAAAGACTTGCCCTTTTCATTTAA 59.740 34.615 0.00 0.00 40.62 1.52
4092 9550 7.041167 GCAAAAGACTTGCCCTTTTCATTTAAT 60.041 33.333 0.00 0.00 40.62 1.40
4093 9551 9.487790 CAAAAGACTTGCCCTTTTCATTTAATA 57.512 29.630 0.00 0.00 40.62 0.98
4095 9553 9.710900 AAAGACTTGCCCTTTTCATTTAATAAG 57.289 29.630 0.00 0.00 30.32 1.73
4096 9554 8.650143 AGACTTGCCCTTTTCATTTAATAAGA 57.350 30.769 0.00 0.00 0.00 2.10
4097 9555 9.088987 AGACTTGCCCTTTTCATTTAATAAGAA 57.911 29.630 0.00 0.00 0.00 2.52
4098 9556 9.358872 GACTTGCCCTTTTCATTTAATAAGAAG 57.641 33.333 0.00 0.00 0.00 2.85
4099 9557 9.088987 ACTTGCCCTTTTCATTTAATAAGAAGA 57.911 29.630 0.00 0.00 0.00 2.87
4100 9558 9.578439 CTTGCCCTTTTCATTTAATAAGAAGAG 57.422 33.333 0.00 0.00 0.00 2.85
4101 9559 8.066612 TGCCCTTTTCATTTAATAAGAAGAGG 57.933 34.615 11.55 11.55 41.07 3.69
4102 9560 7.673926 TGCCCTTTTCATTTAATAAGAAGAGGT 59.326 33.333 14.82 0.00 40.27 3.85
4103 9561 8.531982 GCCCTTTTCATTTAATAAGAAGAGGTT 58.468 33.333 14.82 0.00 40.27 3.50
4117 9575 7.971183 AAGAAGAGGTTTTAGAACAGACATC 57.029 36.000 0.00 0.00 37.51 3.06
4118 9576 7.067496 AGAAGAGGTTTTAGAACAGACATCA 57.933 36.000 0.00 0.00 37.51 3.07
4119 9577 6.931840 AGAAGAGGTTTTAGAACAGACATCAC 59.068 38.462 0.00 0.00 37.51 3.06
4120 9578 5.552178 AGAGGTTTTAGAACAGACATCACC 58.448 41.667 0.00 0.00 37.51 4.02
4121 9579 5.071788 AGAGGTTTTAGAACAGACATCACCA 59.928 40.000 0.00 0.00 37.51 4.17
4122 9580 5.690865 AGGTTTTAGAACAGACATCACCAA 58.309 37.500 0.00 0.00 37.51 3.67
4123 9581 5.765182 AGGTTTTAGAACAGACATCACCAAG 59.235 40.000 0.00 0.00 37.51 3.61
4124 9582 5.452777 GTTTTAGAACAGACATCACCAAGC 58.547 41.667 0.00 0.00 35.79 4.01
4125 9583 1.800805 AGAACAGACATCACCAAGCG 58.199 50.000 0.00 0.00 0.00 4.68
4126 9584 0.798776 GAACAGACATCACCAAGCGG 59.201 55.000 0.00 0.00 38.77 5.52
4127 9585 1.237285 AACAGACATCACCAAGCGGC 61.237 55.000 0.00 0.00 34.57 6.53
4128 9586 2.434884 AGACATCACCAAGCGGCG 60.435 61.111 0.51 0.51 34.57 6.46
4129 9587 3.499737 GACATCACCAAGCGGCGG 61.500 66.667 9.78 0.00 34.57 6.13
4130 9588 3.950794 GACATCACCAAGCGGCGGA 62.951 63.158 9.78 0.00 34.57 5.54
4131 9589 2.745884 CATCACCAAGCGGCGGAA 60.746 61.111 9.78 0.00 34.57 4.30
4132 9590 2.033448 ATCACCAAGCGGCGGAAA 59.967 55.556 9.78 0.00 34.57 3.13
4133 9591 1.602323 ATCACCAAGCGGCGGAAAA 60.602 52.632 9.78 0.00 34.57 2.29
4134 9592 1.586154 ATCACCAAGCGGCGGAAAAG 61.586 55.000 9.78 0.00 34.57 2.27
4135 9593 3.670377 ACCAAGCGGCGGAAAAGC 61.670 61.111 9.78 0.00 34.57 3.51
4136 9594 3.669344 CCAAGCGGCGGAAAAGCA 61.669 61.111 9.78 0.00 39.27 3.91
4137 9595 2.334653 CAAGCGGCGGAAAAGCAA 59.665 55.556 9.78 0.00 39.27 3.91
4138 9596 1.299773 CAAGCGGCGGAAAAGCAAA 60.300 52.632 9.78 0.00 39.27 3.68
4139 9597 0.873743 CAAGCGGCGGAAAAGCAAAA 60.874 50.000 9.78 0.00 39.27 2.44
4140 9598 0.874175 AAGCGGCGGAAAAGCAAAAC 60.874 50.000 9.78 0.00 39.27 2.43
4141 9599 1.590259 GCGGCGGAAAAGCAAAACA 60.590 52.632 9.78 0.00 39.27 2.83
4142 9600 1.148759 GCGGCGGAAAAGCAAAACAA 61.149 50.000 9.78 0.00 39.27 2.83
4143 9601 1.496934 CGGCGGAAAAGCAAAACAAT 58.503 45.000 0.00 0.00 39.27 2.71
4144 9602 1.864082 CGGCGGAAAAGCAAAACAATT 59.136 42.857 0.00 0.00 39.27 2.32
4145 9603 3.053455 CGGCGGAAAAGCAAAACAATTA 58.947 40.909 0.00 0.00 39.27 1.40
4146 9604 3.121160 CGGCGGAAAAGCAAAACAATTAC 60.121 43.478 0.00 0.00 39.27 1.89
4147 9605 4.055360 GGCGGAAAAGCAAAACAATTACT 58.945 39.130 0.00 0.00 39.27 2.24
4148 9606 4.149922 GGCGGAAAAGCAAAACAATTACTC 59.850 41.667 0.00 0.00 39.27 2.59
4149 9607 4.982295 GCGGAAAAGCAAAACAATTACTCT 59.018 37.500 0.00 0.00 37.05 3.24
4150 9608 5.117135 GCGGAAAAGCAAAACAATTACTCTC 59.883 40.000 0.00 0.00 37.05 3.20
4151 9609 5.339611 CGGAAAAGCAAAACAATTACTCTCG 59.660 40.000 0.00 0.00 0.00 4.04
4152 9610 5.117135 GGAAAAGCAAAACAATTACTCTCGC 59.883 40.000 0.00 0.00 0.00 5.03
4153 9611 3.455619 AGCAAAACAATTACTCTCGCG 57.544 42.857 0.00 0.00 0.00 5.87
4154 9612 2.159627 AGCAAAACAATTACTCTCGCGG 59.840 45.455 6.13 0.00 0.00 6.46
4155 9613 2.095919 GCAAAACAATTACTCTCGCGGT 60.096 45.455 6.13 0.00 0.00 5.68
4156 9614 3.123959 GCAAAACAATTACTCTCGCGGTA 59.876 43.478 6.13 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.133606 ACCACAATCCCAAACCGACTT 60.134 47.619 0.00 0.00 0.00 3.01
97 4361 2.091555 TGAGGCAAAACCCTAGGTGTTT 60.092 45.455 17.71 17.71 40.58 2.83
359 4626 0.321210 TATGGGTGCGACAGTGTTGG 60.321 55.000 12.54 1.90 0.00 3.77
540 4807 8.815565 TTGTTGGAATATTAGGCAAGTTCATA 57.184 30.769 0.00 0.00 0.00 2.15
651 4933 0.607489 CTTCAGGTGCTTGGGTCAGG 60.607 60.000 0.00 0.00 0.00 3.86
666 4948 3.430862 GCGGGTTGATGCGCTTCA 61.431 61.111 20.86 20.86 0.00 3.02
678 4963 0.249398 GGTATGACTTGTGAGCGGGT 59.751 55.000 0.00 0.00 0.00 5.28
697 4982 3.057174 CCTAACTATCTAGGCTTCGCTGG 60.057 52.174 0.00 0.00 32.32 4.85
712 4997 1.473677 TGCGCGCTACTTTCCTAACTA 59.526 47.619 33.29 2.73 0.00 2.24
719 5004 2.093983 CACGTGCGCGCTACTTTC 59.906 61.111 33.29 13.70 42.83 2.62
721 5006 4.351938 TCCACGTGCGCGCTACTT 62.352 61.111 33.29 18.51 42.83 2.24
722 5007 4.778415 CTCCACGTGCGCGCTACT 62.778 66.667 33.29 11.07 42.83 2.57
745 5030 1.736032 CGAGACTCCAACATCGGAACC 60.736 57.143 0.00 0.00 33.65 3.62
751 5036 0.460987 CAGGGCGAGACTCCAACATC 60.461 60.000 0.00 0.00 0.00 3.06
752 5037 0.904865 TCAGGGCGAGACTCCAACAT 60.905 55.000 0.00 0.00 0.00 2.71
801 5090 3.129502 CCGATGCAGCTGGTGGTG 61.130 66.667 17.12 0.00 43.87 4.17
878 5167 3.117171 GCTGCTGCTGACCTGACG 61.117 66.667 10.92 0.00 36.03 4.35
963 5252 2.046892 AGCAAGCACGTAGGCAGG 60.047 61.111 0.36 0.00 35.83 4.85
965 5254 3.049674 GCAGCAAGCACGTAGGCA 61.050 61.111 0.36 0.00 44.79 4.75
1224 5523 5.078256 CAGGTAGTAATAGGTACCAGGAGG 58.922 50.000 15.94 0.00 41.19 4.30
1238 5537 6.335471 TGAAGTCGATTTGTCAGGTAGTAA 57.665 37.500 0.00 0.00 0.00 2.24
1239 5538 5.970317 TGAAGTCGATTTGTCAGGTAGTA 57.030 39.130 0.00 0.00 0.00 1.82
1271 5570 9.483062 CTTCTAGCTTGTTTAATGAAAGAATCG 57.517 33.333 0.00 0.00 28.37 3.34
1277 5576 8.100791 TCTAGGCTTCTAGCTTGTTTAATGAAA 58.899 33.333 0.00 0.00 41.99 2.69
1288 5595 2.166664 CACGGTTCTAGGCTTCTAGCTT 59.833 50.000 0.00 0.00 41.99 3.74
1307 5614 1.135517 ACAACGCTTGTCAAACCACAC 60.136 47.619 0.00 0.00 40.56 3.82
1624 5940 1.293498 GAGCGTCATGACCCACACT 59.707 57.895 20.03 9.58 0.00 3.55
1676 5992 1.211969 CGACGACGACCCAGTTGAT 59.788 57.895 0.00 0.00 42.66 2.57
1926 6248 9.297586 TCACAATTTCGTCTGTAATGTAGATAC 57.702 33.333 0.00 0.00 0.00 2.24
1927 6249 9.516314 CTCACAATTTCGTCTGTAATGTAGATA 57.484 33.333 0.00 0.00 0.00 1.98
1928 6250 8.035394 ACTCACAATTTCGTCTGTAATGTAGAT 58.965 33.333 0.00 0.00 0.00 1.98
1929 6251 7.375834 ACTCACAATTTCGTCTGTAATGTAGA 58.624 34.615 0.00 0.00 0.00 2.59
1930 6252 7.582435 ACTCACAATTTCGTCTGTAATGTAG 57.418 36.000 0.00 0.00 0.00 2.74
1932 6254 9.302345 CTATACTCACAATTTCGTCTGTAATGT 57.698 33.333 0.00 0.00 0.00 2.71
1933 6255 8.755941 CCTATACTCACAATTTCGTCTGTAATG 58.244 37.037 0.00 0.00 0.00 1.90
1934 6256 8.692710 TCCTATACTCACAATTTCGTCTGTAAT 58.307 33.333 0.00 0.00 0.00 1.89
1935 6257 8.058667 TCCTATACTCACAATTTCGTCTGTAA 57.941 34.615 0.00 0.00 0.00 2.41
1949 6271 7.383572 CAGCACAAATATCACTCCTATACTCAC 59.616 40.741 0.00 0.00 0.00 3.51
1951 6273 6.367422 GCAGCACAAATATCACTCCTATACTC 59.633 42.308 0.00 0.00 0.00 2.59
1952 6274 6.183361 TGCAGCACAAATATCACTCCTATACT 60.183 38.462 0.00 0.00 0.00 2.12
1954 6276 6.173427 TGCAGCACAAATATCACTCCTATA 57.827 37.500 0.00 0.00 0.00 1.31
1955 6277 5.039920 TGCAGCACAAATATCACTCCTAT 57.960 39.130 0.00 0.00 0.00 2.57
1966 6323 3.063510 TCTCTAAGCTGCAGCACAAAT 57.936 42.857 38.24 20.93 45.16 2.32
1968 6325 2.289882 ACATCTCTAAGCTGCAGCACAA 60.290 45.455 38.24 22.16 45.16 3.33
2006 6363 3.118261 TCAGGCAACCCACTAGAATGATC 60.118 47.826 0.00 0.00 37.17 2.92
2025 6382 4.904241 ACTTGAATCTCTGGGTTCTTCAG 58.096 43.478 0.00 0.00 0.00 3.02
2073 6430 7.173032 TGTAAGTCAGTCAGAGATTACTGGTA 58.827 38.462 0.00 0.00 42.72 3.25
2095 6492 1.000506 GGTCTCGGAACAAGCACTGTA 59.999 52.381 0.00 0.00 37.23 2.74
2125 6522 9.574516 AATTCAACCTCTTATTAGGCGAATTAT 57.425 29.630 14.51 0.00 43.46 1.28
2138 6535 5.592282 TGTTGCAACAGAATTCAACCTCTTA 59.408 36.000 27.96 0.00 38.32 2.10
2141 6538 4.305989 TGTTGCAACAGAATTCAACCTC 57.694 40.909 27.96 0.00 38.32 3.85
2188 6585 4.381505 GCATTGAAACCAACGGATACCATT 60.382 41.667 0.00 0.00 0.00 3.16
2200 6597 2.596046 ACGGCGGCATTGAAACCA 60.596 55.556 13.24 0.00 0.00 3.67
2229 6626 2.435059 GGAGGACAGAGCGGTTGC 60.435 66.667 0.00 0.00 43.24 4.17
2230 6627 1.216710 GAGGAGGACAGAGCGGTTG 59.783 63.158 0.00 0.00 0.00 3.77
2231 6628 1.985116 GGAGGAGGACAGAGCGGTT 60.985 63.158 0.00 0.00 0.00 4.44
2232 6629 2.363147 GGAGGAGGACAGAGCGGT 60.363 66.667 0.00 0.00 0.00 5.68
2233 6630 3.151022 GGGAGGAGGACAGAGCGG 61.151 72.222 0.00 0.00 0.00 5.52
2234 6631 3.151022 GGGGAGGAGGACAGAGCG 61.151 72.222 0.00 0.00 0.00 5.03
2242 6639 2.443632 GGAATTAGAAAGGGGGAGGAGG 59.556 54.545 0.00 0.00 0.00 4.30
2307 6718 0.392863 CGAACACTGGGCATGATGGA 60.393 55.000 0.00 0.00 0.00 3.41
2313 6724 3.049674 CACGCGAACACTGGGCAT 61.050 61.111 15.93 0.00 0.00 4.40
2456 6885 0.387622 CGTCGTCGGTGAAAAGCCTA 60.388 55.000 0.00 0.00 0.00 3.93
2573 7003 3.620374 ACGTTCTTGATGATGACTGATGC 59.380 43.478 0.00 0.00 0.00 3.91
2610 7040 3.433274 TCATCGATTTGCTGTCAACAGAC 59.567 43.478 14.20 6.07 46.59 3.51
2627 7057 2.028404 CACACACGTCACATCATCATCG 59.972 50.000 0.00 0.00 0.00 3.84
2628 7058 3.253230 TCACACACGTCACATCATCATC 58.747 45.455 0.00 0.00 0.00 2.92
2629 7059 3.317603 TCACACACGTCACATCATCAT 57.682 42.857 0.00 0.00 0.00 2.45
2652 7082 2.076863 CTGGAAGGAATCACCAACGAC 58.923 52.381 0.00 0.00 42.04 4.34
2752 7182 4.749310 AAGCCGAGGACAGCTGCG 62.749 66.667 15.27 9.17 39.87 5.18
2819 7251 0.684153 AGCAGAGAGTCTCCTGGAGC 60.684 60.000 19.08 13.56 0.00 4.70
2823 7255 2.094597 CAGAACAGCAGAGAGTCTCCTG 60.095 54.545 16.74 18.24 0.00 3.86
2826 7258 4.454728 AATCAGAACAGCAGAGAGTCTC 57.545 45.455 12.54 12.54 0.00 3.36
2827 7259 4.888326 AAATCAGAACAGCAGAGAGTCT 57.112 40.909 0.00 0.00 0.00 3.24
2828 7260 5.687828 CAAAAATCAGAACAGCAGAGAGTC 58.312 41.667 0.00 0.00 0.00 3.36
2829 7261 4.023365 GCAAAAATCAGAACAGCAGAGAGT 60.023 41.667 0.00 0.00 0.00 3.24
2830 7262 4.474113 GCAAAAATCAGAACAGCAGAGAG 58.526 43.478 0.00 0.00 0.00 3.20
2831 7263 3.254166 GGCAAAAATCAGAACAGCAGAGA 59.746 43.478 0.00 0.00 0.00 3.10
2833 7265 2.030893 CGGCAAAAATCAGAACAGCAGA 60.031 45.455 0.00 0.00 0.00 4.26
2834 7266 2.322161 CGGCAAAAATCAGAACAGCAG 58.678 47.619 0.00 0.00 0.00 4.24
2835 7267 1.000385 CCGGCAAAAATCAGAACAGCA 60.000 47.619 0.00 0.00 0.00 4.41
2836 7268 1.669795 CCCGGCAAAAATCAGAACAGC 60.670 52.381 0.00 0.00 0.00 4.40
2837 7269 1.885887 TCCCGGCAAAAATCAGAACAG 59.114 47.619 0.00 0.00 0.00 3.16
2851 7283 1.154035 CGTTTGCATTTCTCCCGGC 60.154 57.895 0.00 0.00 0.00 6.13
2852 7284 1.506262 CCGTTTGCATTTCTCCCGG 59.494 57.895 0.00 0.00 0.00 5.73
2854 7286 1.132453 GTAGCCGTTTGCATTTCTCCC 59.868 52.381 0.00 0.00 44.83 4.30
2855 7287 2.084546 AGTAGCCGTTTGCATTTCTCC 58.915 47.619 0.00 0.00 44.83 3.71
2856 7288 2.742053 TCAGTAGCCGTTTGCATTTCTC 59.258 45.455 0.00 0.00 44.83 2.87
2857 7289 2.778299 TCAGTAGCCGTTTGCATTTCT 58.222 42.857 0.00 0.00 44.83 2.52
2858 7290 3.764885 ATCAGTAGCCGTTTGCATTTC 57.235 42.857 0.00 0.00 44.83 2.17
2859 7291 3.758554 AGAATCAGTAGCCGTTTGCATTT 59.241 39.130 0.00 0.00 44.83 2.32
2861 7293 2.679837 CAGAATCAGTAGCCGTTTGCAT 59.320 45.455 0.00 0.00 44.83 3.96
2862 7294 2.076100 CAGAATCAGTAGCCGTTTGCA 58.924 47.619 0.00 0.00 44.83 4.08
2863 7295 2.076863 ACAGAATCAGTAGCCGTTTGC 58.923 47.619 0.00 0.00 41.71 3.68
2864 7296 3.067106 ACACAGAATCAGTAGCCGTTTG 58.933 45.455 0.00 0.00 0.00 2.93
2868 7300 2.159421 ACGTACACAGAATCAGTAGCCG 60.159 50.000 0.00 0.00 0.00 5.52
2871 7305 3.833442 TGCACGTACACAGAATCAGTAG 58.167 45.455 0.00 0.00 0.00 2.57
2948 7382 5.198965 CCATTTGGTTCTGAAGAGGATCAT 58.801 41.667 0.00 0.00 37.82 2.45
2974 7408 5.006941 GTCAAGCGTGTTTGTTACCTCTTTA 59.993 40.000 0.00 0.00 0.00 1.85
2987 7421 3.000925 CGAACTAGTTTGTCAAGCGTGTT 59.999 43.478 10.02 10.82 0.00 3.32
2988 7422 2.538449 CGAACTAGTTTGTCAAGCGTGT 59.462 45.455 10.02 0.00 0.00 4.49
2989 7423 2.792674 TCGAACTAGTTTGTCAAGCGTG 59.207 45.455 20.10 0.00 0.00 5.34
2991 7425 3.244345 TGTTCGAACTAGTTTGTCAAGCG 59.756 43.478 27.32 12.33 0.00 4.68
2992 7426 4.789095 TGTTCGAACTAGTTTGTCAAGC 57.211 40.909 27.32 6.39 0.00 4.01
2994 7428 5.870433 TCAGTTGTTCGAACTAGTTTGTCAA 59.130 36.000 27.32 20.58 0.00 3.18
2995 7429 5.412640 TCAGTTGTTCGAACTAGTTTGTCA 58.587 37.500 27.32 16.98 0.00 3.58
2996 7430 5.961395 TCAGTTGTTCGAACTAGTTTGTC 57.039 39.130 27.32 15.06 0.00 3.18
2999 7433 7.094933 ACACTTTTCAGTTGTTCGAACTAGTTT 60.095 33.333 27.32 7.54 0.00 2.66
3000 7434 6.370718 ACACTTTTCAGTTGTTCGAACTAGTT 59.629 34.615 27.32 8.13 0.00 2.24
3001 7435 5.873164 ACACTTTTCAGTTGTTCGAACTAGT 59.127 36.000 27.32 20.27 0.00 2.57
3002 7436 6.345920 ACACTTTTCAGTTGTTCGAACTAG 57.654 37.500 27.32 14.77 0.00 2.57
3003 7437 7.546667 AGTTACACTTTTCAGTTGTTCGAACTA 59.453 33.333 27.32 18.53 0.00 2.24
3004 7438 6.370718 AGTTACACTTTTCAGTTGTTCGAACT 59.629 34.615 27.32 6.11 0.00 3.01
3009 7453 6.679327 AGGAGTTACACTTTTCAGTTGTTC 57.321 37.500 0.00 0.00 0.00 3.18
3015 7459 8.091449 AGATCAACTAGGAGTTACACTTTTCAG 58.909 37.037 0.00 0.00 36.03 3.02
3024 7468 9.660180 AGAAATCAAAGATCAACTAGGAGTTAC 57.340 33.333 0.00 0.00 36.03 2.50
3025 7469 9.658799 CAGAAATCAAAGATCAACTAGGAGTTA 57.341 33.333 0.00 0.00 36.03 2.24
3026 7470 8.378565 TCAGAAATCAAAGATCAACTAGGAGTT 58.621 33.333 0.00 0.00 39.39 3.01
3027 7471 7.911651 TCAGAAATCAAAGATCAACTAGGAGT 58.088 34.615 0.00 0.00 0.00 3.85
3029 7473 7.281774 GCATCAGAAATCAAAGATCAACTAGGA 59.718 37.037 0.00 0.00 0.00 2.94
3030 7474 7.066645 TGCATCAGAAATCAAAGATCAACTAGG 59.933 37.037 0.00 0.00 0.00 3.02
3031 7475 7.909121 GTGCATCAGAAATCAAAGATCAACTAG 59.091 37.037 0.00 0.00 0.00 2.57
3032 7476 7.609146 AGTGCATCAGAAATCAAAGATCAACTA 59.391 33.333 0.00 0.00 0.00 2.24
3033 7477 6.433404 AGTGCATCAGAAATCAAAGATCAACT 59.567 34.615 0.00 0.00 0.00 3.16
3034 7478 6.618811 AGTGCATCAGAAATCAAAGATCAAC 58.381 36.000 0.00 0.00 0.00 3.18
3035 7479 6.829229 AGTGCATCAGAAATCAAAGATCAA 57.171 33.333 0.00 0.00 0.00 2.57
3036 7480 7.926674 TTAGTGCATCAGAAATCAAAGATCA 57.073 32.000 0.00 0.00 0.00 2.92
3043 7496 6.211184 ACCCAAAATTAGTGCATCAGAAATCA 59.789 34.615 0.00 0.00 0.00 2.57
3061 7518 0.397675 TGCATCACCACCACCCAAAA 60.398 50.000 0.00 0.00 0.00 2.44
3093 7550 4.388499 TTCCGCACCCGCTCTTCC 62.388 66.667 0.00 0.00 35.30 3.46
3168 7625 4.043200 GTGCGCAACCAGGCTTCC 62.043 66.667 14.00 0.00 0.00 3.46
3169 7626 3.286751 TGTGCGCAACCAGGCTTC 61.287 61.111 14.00 0.00 0.00 3.86
3173 7630 3.964875 GGTGTGTGCGCAACCAGG 61.965 66.667 21.97 0.00 0.00 4.45
3189 7646 6.907206 ATTCTTTGTGTCAAATTTGTGTGG 57.093 33.333 17.47 4.11 0.00 4.17
3268 7742 7.997482 TCTACACTGAATGATTACTGTAGTCC 58.003 38.462 7.72 0.00 34.95 3.85
3286 7760 2.241685 ACGGAGGGAGTACATCTACACT 59.758 50.000 0.00 0.00 0.00 3.55
3293 7767 1.455217 CCGGACGGAGGGAGTACAT 60.455 63.158 4.40 0.00 37.50 2.29
3298 7772 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3301 7775 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3302 7776 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3303 7777 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3304 7778 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3305 7779 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3306 7780 5.470845 CTTGATGACAAGTATTTCCGGAC 57.529 43.478 1.83 0.00 45.73 4.79
3391 7865 9.502091 CCTTCATCCGGAAATACTTATTATCAA 57.498 33.333 9.01 0.00 34.44 2.57
3392 7866 8.100791 CCCTTCATCCGGAAATACTTATTATCA 58.899 37.037 9.01 0.00 34.44 2.15
3393 7867 8.101419 ACCCTTCATCCGGAAATACTTATTATC 58.899 37.037 9.01 0.00 34.44 1.75
3394 7868 7.883311 CACCCTTCATCCGGAAATACTTATTAT 59.117 37.037 9.01 0.00 34.44 1.28
3395 7869 7.147444 ACACCCTTCATCCGGAAATACTTATTA 60.147 37.037 9.01 0.00 34.44 0.98
3396 7870 6.062095 CACCCTTCATCCGGAAATACTTATT 58.938 40.000 9.01 0.00 34.44 1.40
3397 7871 5.132144 ACACCCTTCATCCGGAAATACTTAT 59.868 40.000 9.01 0.00 34.44 1.73
3398 7872 4.472108 ACACCCTTCATCCGGAAATACTTA 59.528 41.667 9.01 0.00 34.44 2.24
3399 7873 3.265995 ACACCCTTCATCCGGAAATACTT 59.734 43.478 9.01 0.00 34.44 2.24
3400 7874 2.844348 ACACCCTTCATCCGGAAATACT 59.156 45.455 9.01 0.00 34.44 2.12
3401 7875 3.277142 ACACCCTTCATCCGGAAATAC 57.723 47.619 9.01 0.00 34.44 1.89
3402 7876 5.368523 AGAATACACCCTTCATCCGGAAATA 59.631 40.000 9.01 0.00 34.44 1.40
3403 7877 4.166144 AGAATACACCCTTCATCCGGAAAT 59.834 41.667 9.01 0.00 34.44 2.17
3404 7878 3.521937 AGAATACACCCTTCATCCGGAAA 59.478 43.478 9.01 0.00 34.44 3.13
3405 7879 3.112263 AGAATACACCCTTCATCCGGAA 58.888 45.455 9.01 0.00 0.00 4.30
3406 7880 2.759355 AGAATACACCCTTCATCCGGA 58.241 47.619 6.61 6.61 0.00 5.14
3407 7881 3.560636 AAGAATACACCCTTCATCCGG 57.439 47.619 0.00 0.00 0.00 5.14
3408 7882 5.527582 CCTTAAAGAATACACCCTTCATCCG 59.472 44.000 0.00 0.00 0.00 4.18
3409 7883 5.828328 CCCTTAAAGAATACACCCTTCATCC 59.172 44.000 0.00 0.00 0.00 3.51
3410 7884 6.424032 ACCCTTAAAGAATACACCCTTCATC 58.576 40.000 0.00 0.00 0.00 2.92
3411 7885 6.217693 AGACCCTTAAAGAATACACCCTTCAT 59.782 38.462 0.00 0.00 0.00 2.57
3412 7886 5.550403 AGACCCTTAAAGAATACACCCTTCA 59.450 40.000 0.00 0.00 0.00 3.02
3413 7887 6.063496 AGACCCTTAAAGAATACACCCTTC 57.937 41.667 0.00 0.00 0.00 3.46
3414 7888 6.045106 TGAAGACCCTTAAAGAATACACCCTT 59.955 38.462 0.00 0.00 0.00 3.95
3415 7889 5.550403 TGAAGACCCTTAAAGAATACACCCT 59.450 40.000 0.00 0.00 0.00 4.34
3416 7890 5.646793 GTGAAGACCCTTAAAGAATACACCC 59.353 44.000 0.00 0.00 0.00 4.61
3417 7891 6.473758 AGTGAAGACCCTTAAAGAATACACC 58.526 40.000 0.00 0.00 0.00 4.16
3418 7892 7.981102 AAGTGAAGACCCTTAAAGAATACAC 57.019 36.000 0.00 0.00 0.00 2.90
3419 7893 8.846211 CAAAAGTGAAGACCCTTAAAGAATACA 58.154 33.333 0.00 0.00 0.00 2.29
3420 7894 8.847196 ACAAAAGTGAAGACCCTTAAAGAATAC 58.153 33.333 0.00 0.00 0.00 1.89
3421 7895 8.990163 ACAAAAGTGAAGACCCTTAAAGAATA 57.010 30.769 0.00 0.00 0.00 1.75
3422 7896 7.898014 ACAAAAGTGAAGACCCTTAAAGAAT 57.102 32.000 0.00 0.00 0.00 2.40
3423 7897 7.614192 AGAACAAAAGTGAAGACCCTTAAAGAA 59.386 33.333 0.00 0.00 0.00 2.52
3424 7898 7.116736 AGAACAAAAGTGAAGACCCTTAAAGA 58.883 34.615 0.00 0.00 0.00 2.52
3425 7899 7.334844 AGAACAAAAGTGAAGACCCTTAAAG 57.665 36.000 0.00 0.00 0.00 1.85
3426 7900 8.990163 ATAGAACAAAAGTGAAGACCCTTAAA 57.010 30.769 0.00 0.00 0.00 1.52
3466 7941 6.006449 ACCACGAGACTAACTTCTAACCTTA 58.994 40.000 0.00 0.00 0.00 2.69
3477 7952 0.456312 CCGCAGACCACGAGACTAAC 60.456 60.000 0.00 0.00 0.00 2.34
3503 7978 2.730672 CTATTAGCATCGCGCCGGC 61.731 63.158 19.07 19.07 44.04 6.13
3504 7979 2.094659 CCTATTAGCATCGCGCCGG 61.095 63.158 0.00 0.00 44.04 6.13
3505 7980 2.730672 GCCTATTAGCATCGCGCCG 61.731 63.158 0.00 0.00 44.04 6.46
3524 7999 2.386661 AAAGTGCACCCTAGACATCG 57.613 50.000 14.63 0.00 0.00 3.84
3538 8013 8.405531 TCTAGAAACCAAGATCAAACAAAAGTG 58.594 33.333 0.00 0.00 0.00 3.16
3550 8029 6.688073 TCAAACTCCTCTAGAAACCAAGAT 57.312 37.500 0.00 0.00 0.00 2.40
3556 8035 8.787852 ACAAAATGATCAAACTCCTCTAGAAAC 58.212 33.333 0.00 0.00 0.00 2.78
3557 8036 8.924511 ACAAAATGATCAAACTCCTCTAGAAA 57.075 30.769 0.00 0.00 0.00 2.52
3562 8041 8.010733 TCAAAACAAAATGATCAAACTCCTCT 57.989 30.769 0.00 0.00 0.00 3.69
3637 8645 9.299963 TCAGTGATTTTTGTTTTATCAAGTGTG 57.700 29.630 0.00 0.00 30.72 3.82
3651 8659 8.764287 GGTTCTTTGGTTTATCAGTGATTTTTG 58.236 33.333 11.68 0.00 0.00 2.44
3689 8697 0.175760 TCCTACATGTCGCAAGGAGC 59.824 55.000 10.49 0.00 33.18 4.70
3703 8711 2.181021 CCGGTGCGACAGTCCTAC 59.819 66.667 0.00 0.00 0.00 3.18
3743 8755 1.373497 CAGCGAGAAACGGCTGACT 60.373 57.895 7.20 0.00 43.30 3.41
3747 8759 1.732259 CATAAACAGCGAGAAACGGCT 59.268 47.619 0.00 0.00 42.83 5.52
3761 8773 5.643777 AGAGTACAACATCTGGCACATAAAC 59.356 40.000 0.00 0.00 38.20 2.01
3769 8781 5.239525 AGACAAAAAGAGTACAACATCTGGC 59.760 40.000 0.00 0.00 0.00 4.85
3794 8806 9.981114 CCCAAAATAGTACAACATCTTTTCTTT 57.019 29.630 0.00 0.00 0.00 2.52
3795 8807 9.143155 ACCCAAAATAGTACAACATCTTTTCTT 57.857 29.630 0.00 0.00 0.00 2.52
3796 8808 8.706322 ACCCAAAATAGTACAACATCTTTTCT 57.294 30.769 0.00 0.00 0.00 2.52
3797 8809 9.758651 AAACCCAAAATAGTACAACATCTTTTC 57.241 29.630 0.00 0.00 0.00 2.29
3801 8813 9.357161 TGTTAAACCCAAAATAGTACAACATCT 57.643 29.630 0.00 0.00 0.00 2.90
3802 8814 9.968870 TTGTTAAACCCAAAATAGTACAACATC 57.031 29.630 0.00 0.00 0.00 3.06
3817 8829 9.213799 GCATAAGAATGATTTTTGTTAAACCCA 57.786 29.630 0.00 0.00 34.84 4.51
3831 8843 7.396540 AAACCGAAAGAAGCATAAGAATGAT 57.603 32.000 0.00 0.00 34.84 2.45
3843 8855 7.603024 AGATAAACTGGAGTAAACCGAAAGAAG 59.397 37.037 0.00 0.00 0.00 2.85
3872 9330 8.629158 TGTGCACTTTTCATTAACATAGAAAGT 58.371 29.630 19.41 0.00 33.35 2.66
3892 9350 4.363999 AGCTACGAGAGATTTATGTGCAC 58.636 43.478 10.75 10.75 0.00 4.57
3894 9352 3.666334 CGAGCTACGAGAGATTTATGTGC 59.334 47.826 0.00 0.00 45.77 4.57
3909 9367 3.117046 GGTTAGAGCAATGTCGAGCTAC 58.883 50.000 0.00 0.00 42.04 3.58
3912 9370 2.301577 AGGTTAGAGCAATGTCGAGC 57.698 50.000 0.00 0.00 0.00 5.03
3915 9373 3.195661 GGGTTAGGTTAGAGCAATGTCG 58.804 50.000 0.00 0.00 0.00 4.35
3918 9376 5.063880 GGTATGGGTTAGGTTAGAGCAATG 58.936 45.833 0.00 0.00 0.00 2.82
3965 9423 8.931385 CCTTTGGAAATGGTATTTAGAACATG 57.069 34.615 0.00 0.00 36.45 3.21
4053 9511 6.567511 GCAAGTCTTTTGCCTTGTTTCAAAAA 60.568 34.615 0.54 0.00 40.36 1.94
4054 9512 5.106752 GCAAGTCTTTTGCCTTGTTTCAAAA 60.107 36.000 0.54 0.00 40.13 2.44
4055 9513 4.391523 GCAAGTCTTTTGCCTTGTTTCAAA 59.608 37.500 0.54 0.00 40.13 2.69
4056 9514 3.932089 GCAAGTCTTTTGCCTTGTTTCAA 59.068 39.130 0.54 0.00 40.13 2.69
4057 9515 3.520569 GCAAGTCTTTTGCCTTGTTTCA 58.479 40.909 0.54 0.00 40.13 2.69
4066 9524 3.177997 TGAAAAGGGCAAGTCTTTTGC 57.822 42.857 6.55 3.39 42.40 3.68
4067 9525 7.784633 TTAAATGAAAAGGGCAAGTCTTTTG 57.215 32.000 6.55 0.00 42.40 2.44
4069 9527 9.710900 CTTATTAAATGAAAAGGGCAAGTCTTT 57.289 29.630 0.00 0.00 36.15 2.52
4070 9528 9.088987 TCTTATTAAATGAAAAGGGCAAGTCTT 57.911 29.630 0.00 0.00 0.00 3.01
4071 9529 8.650143 TCTTATTAAATGAAAAGGGCAAGTCT 57.350 30.769 0.00 0.00 0.00 3.24
4072 9530 9.358872 CTTCTTATTAAATGAAAAGGGCAAGTC 57.641 33.333 0.00 0.00 0.00 3.01
4073 9531 9.088987 TCTTCTTATTAAATGAAAAGGGCAAGT 57.911 29.630 0.00 0.00 0.00 3.16
4074 9532 9.578439 CTCTTCTTATTAAATGAAAAGGGCAAG 57.422 33.333 0.00 0.00 0.00 4.01
4075 9533 8.531146 CCTCTTCTTATTAAATGAAAAGGGCAA 58.469 33.333 0.00 0.00 27.52 4.52
4076 9534 7.673926 ACCTCTTCTTATTAAATGAAAAGGGCA 59.326 33.333 10.52 0.00 33.52 5.36
4077 9535 8.067751 ACCTCTTCTTATTAAATGAAAAGGGC 57.932 34.615 10.52 0.00 33.52 5.19
4091 9549 9.660180 GATGTCTGTTCTAAAACCTCTTCTTAT 57.340 33.333 0.00 0.00 34.28 1.73
4092 9550 8.647796 TGATGTCTGTTCTAAAACCTCTTCTTA 58.352 33.333 0.00 0.00 34.28 2.10
4093 9551 7.442666 GTGATGTCTGTTCTAAAACCTCTTCTT 59.557 37.037 0.00 0.00 34.28 2.52
4094 9552 6.931840 GTGATGTCTGTTCTAAAACCTCTTCT 59.068 38.462 0.00 0.00 34.28 2.85
4095 9553 6.147985 GGTGATGTCTGTTCTAAAACCTCTTC 59.852 42.308 0.00 0.00 34.28 2.87
4096 9554 5.998363 GGTGATGTCTGTTCTAAAACCTCTT 59.002 40.000 0.00 0.00 34.28 2.85
4097 9555 5.071788 TGGTGATGTCTGTTCTAAAACCTCT 59.928 40.000 0.00 0.00 34.28 3.69
4098 9556 5.305585 TGGTGATGTCTGTTCTAAAACCTC 58.694 41.667 0.00 0.00 34.28 3.85
4099 9557 5.304686 TGGTGATGTCTGTTCTAAAACCT 57.695 39.130 0.00 0.00 34.28 3.50
4100 9558 5.562890 GCTTGGTGATGTCTGTTCTAAAACC 60.563 44.000 0.00 0.00 34.28 3.27
4101 9559 5.452777 GCTTGGTGATGTCTGTTCTAAAAC 58.547 41.667 0.00 0.00 35.85 2.43
4102 9560 4.213270 CGCTTGGTGATGTCTGTTCTAAAA 59.787 41.667 0.00 0.00 0.00 1.52
4103 9561 3.745975 CGCTTGGTGATGTCTGTTCTAAA 59.254 43.478 0.00 0.00 0.00 1.85
4104 9562 3.325870 CGCTTGGTGATGTCTGTTCTAA 58.674 45.455 0.00 0.00 0.00 2.10
4105 9563 2.353704 CCGCTTGGTGATGTCTGTTCTA 60.354 50.000 0.00 0.00 0.00 2.10
4106 9564 1.609061 CCGCTTGGTGATGTCTGTTCT 60.609 52.381 0.00 0.00 0.00 3.01
4107 9565 0.798776 CCGCTTGGTGATGTCTGTTC 59.201 55.000 0.00 0.00 0.00 3.18
4108 9566 1.237285 GCCGCTTGGTGATGTCTGTT 61.237 55.000 0.00 0.00 34.16 3.16
4109 9567 1.672356 GCCGCTTGGTGATGTCTGT 60.672 57.895 0.00 0.00 34.16 3.41
4110 9568 2.743752 CGCCGCTTGGTGATGTCTG 61.744 63.158 0.00 0.00 46.68 3.51
4111 9569 2.434884 CGCCGCTTGGTGATGTCT 60.435 61.111 0.00 0.00 46.68 3.41
4112 9570 3.499737 CCGCCGCTTGGTGATGTC 61.500 66.667 0.00 0.00 46.68 3.06
4113 9571 3.545124 TTCCGCCGCTTGGTGATGT 62.545 57.895 0.00 0.00 46.68 3.06
4114 9572 1.861542 TTTTCCGCCGCTTGGTGATG 61.862 55.000 0.00 0.00 46.68 3.07
4115 9573 1.586154 CTTTTCCGCCGCTTGGTGAT 61.586 55.000 0.00 0.00 46.68 3.06
4116 9574 2.203224 TTTTCCGCCGCTTGGTGA 60.203 55.556 0.00 0.00 46.68 4.02
4117 9575 2.255252 CTTTTCCGCCGCTTGGTG 59.745 61.111 0.00 0.00 43.20 4.17
4118 9576 3.670377 GCTTTTCCGCCGCTTGGT 61.670 61.111 0.00 0.00 34.16 3.67
4119 9577 2.691674 TTTGCTTTTCCGCCGCTTGG 62.692 55.000 0.00 0.00 0.00 3.61
4120 9578 0.873743 TTTTGCTTTTCCGCCGCTTG 60.874 50.000 0.00 0.00 0.00 4.01
4121 9579 0.874175 GTTTTGCTTTTCCGCCGCTT 60.874 50.000 0.00 0.00 0.00 4.68
4122 9580 1.299850 GTTTTGCTTTTCCGCCGCT 60.300 52.632 0.00 0.00 0.00 5.52
4123 9581 1.148759 TTGTTTTGCTTTTCCGCCGC 61.149 50.000 0.00 0.00 0.00 6.53
4124 9582 1.496934 ATTGTTTTGCTTTTCCGCCG 58.503 45.000 0.00 0.00 0.00 6.46
4125 9583 4.055360 AGTAATTGTTTTGCTTTTCCGCC 58.945 39.130 0.00 0.00 0.00 6.13
4126 9584 4.982295 AGAGTAATTGTTTTGCTTTTCCGC 59.018 37.500 0.00 0.00 0.00 5.54
4127 9585 5.339611 CGAGAGTAATTGTTTTGCTTTTCCG 59.660 40.000 0.00 0.00 0.00 4.30
4128 9586 5.117135 GCGAGAGTAATTGTTTTGCTTTTCC 59.883 40.000 0.00 0.00 0.00 3.13
4129 9587 5.164282 CGCGAGAGTAATTGTTTTGCTTTTC 60.164 40.000 0.00 0.00 0.00 2.29
4130 9588 4.675114 CGCGAGAGTAATTGTTTTGCTTTT 59.325 37.500 0.00 0.00 0.00 2.27
4131 9589 4.219033 CGCGAGAGTAATTGTTTTGCTTT 58.781 39.130 0.00 0.00 0.00 3.51
4132 9590 3.364964 CCGCGAGAGTAATTGTTTTGCTT 60.365 43.478 8.23 0.00 0.00 3.91
4133 9591 2.159627 CCGCGAGAGTAATTGTTTTGCT 59.840 45.455 8.23 0.00 0.00 3.91
4134 9592 2.095919 ACCGCGAGAGTAATTGTTTTGC 60.096 45.455 8.23 0.00 0.00 3.68
4135 9593 3.806316 ACCGCGAGAGTAATTGTTTTG 57.194 42.857 8.23 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.