Multiple sequence alignment - TraesCS3A01G299600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G299600 chr3A 100.000 2627 0 0 1 2627 533996088 533993462 0.000000e+00 4852.0
1 TraesCS3A01G299600 chr3A 87.037 162 19 2 1833 1993 533979720 533979560 5.780000e-42 182.0
2 TraesCS3A01G299600 chr3B 88.455 1689 96 40 169 1818 542928830 542930458 0.000000e+00 1947.0
3 TraesCS3A01G299600 chr3B 86.997 1615 115 50 76 1644 542896678 542898243 0.000000e+00 1731.0
4 TraesCS3A01G299600 chr3B 85.340 764 58 20 1178 1937 543067716 543068429 0.000000e+00 741.0
5 TraesCS3A01G299600 chr3B 91.833 502 30 5 1413 1912 543181483 543181975 0.000000e+00 689.0
6 TraesCS3A01G299600 chr3B 80.804 672 66 35 768 1417 543173911 543174541 3.960000e-128 468.0
7 TraesCS3A01G299600 chr3B 88.920 352 19 9 321 670 543173431 543173764 1.450000e-112 416.0
8 TraesCS3A01G299600 chr3B 86.087 230 16 8 73 295 543035451 543035671 1.570000e-57 233.0
9 TraesCS3A01G299600 chr3B 89.247 186 19 1 1986 2170 744366538 744366723 5.650000e-57 231.0
10 TraesCS3A01G299600 chr3B 92.208 154 7 2 301 449 542896455 542896608 2.050000e-51 213.0
11 TraesCS3A01G299600 chr3B 91.736 121 7 3 1833 1953 543095182 543095065 5.820000e-37 165.0
12 TraesCS3A01G299600 chr3B 78.355 231 21 20 1673 1889 542810079 542810294 3.550000e-24 122.0
13 TraesCS3A01G299600 chr3B 93.506 77 4 1 1913 1988 543068779 543068855 2.140000e-21 113.0
14 TraesCS3A01G299600 chr3B 82.051 117 11 8 183 295 543183538 543183648 1.000000e-14 91.6
15 TraesCS3A01G299600 chr3B 83.750 80 7 5 76 155 542928558 542928631 1.300000e-08 71.3
16 TraesCS3A01G299600 chr3D 87.016 1548 110 47 389 1882 416575006 416576516 0.000000e+00 1661.0
17 TraesCS3A01G299600 chr3D 87.539 963 79 20 1036 1988 416951683 416952614 0.000000e+00 1075.0
18 TraesCS3A01G299600 chr3D 80.581 757 62 48 321 1024 416948948 416949672 3.020000e-139 505.0
19 TraesCS3A01G299600 chr3D 90.667 375 33 2 1262 1636 416915592 416915964 5.050000e-137 497.0
20 TraesCS3A01G299600 chr3D 87.296 307 16 14 297 593 416914092 416914385 1.950000e-86 329.0
21 TraesCS3A01G299600 chr3D 87.162 296 20 8 1 288 416912223 416912508 1.170000e-83 320.0
22 TraesCS3A01G299600 chr3D 82.698 341 18 22 1653 1988 416926149 416926453 5.580000e-67 265.0
23 TraesCS3A01G299600 chr3D 83.113 302 26 11 1 299 416566698 416566977 4.340000e-63 252.0
24 TraesCS3A01G299600 chr3D 90.385 156 10 3 1834 1987 416989973 416990125 1.590000e-47 200.0
25 TraesCS3A01G299600 chr3D 92.562 121 6 2 1833 1953 416936503 416936386 1.250000e-38 171.0
26 TraesCS3A01G299600 chr3D 79.570 279 24 22 1626 1894 416563042 416563297 4.500000e-38 169.0
27 TraesCS3A01G299600 chr3D 84.783 138 17 3 1986 2122 586666660 586666526 4.560000e-28 135.0
28 TraesCS3A01G299600 chr5B 81.942 1174 128 46 610 1721 511292034 511293185 0.000000e+00 917.0
29 TraesCS3A01G299600 chr5B 90.710 183 16 1 1989 2170 115371368 115371550 2.610000e-60 243.0
30 TraesCS3A01G299600 chr5A 83.062 1045 96 45 623 1617 536970286 536971299 0.000000e+00 874.0
31 TraesCS3A01G299600 chr5A 87.097 186 23 1 1989 2173 464574078 464573893 2.650000e-50 209.0
32 TraesCS3A01G299600 chr5D 83.896 888 95 28 767 1617 423474099 423474975 0.000000e+00 804.0
33 TraesCS3A01G299600 chr5D 84.043 188 23 3 1989 2170 545630470 545630284 9.660000e-40 174.0
34 TraesCS3A01G299600 chr5D 92.188 64 3 1 610 671 423473618 423473681 3.600000e-14 89.8
35 TraesCS3A01G299600 chr7A 96.617 266 8 1 2362 2627 148409643 148409379 8.630000e-120 440.0
36 TraesCS3A01G299600 chr7A 96.604 265 8 1 2363 2627 167863309 167863572 3.100000e-119 438.0
37 TraesCS3A01G299600 chr7A 80.000 185 29 4 1993 2170 592296664 592296847 2.120000e-26 130.0
38 TraesCS3A01G299600 chr6B 96.617 266 8 1 2362 2627 638449158 638449422 8.630000e-120 440.0
39 TraesCS3A01G299600 chr2A 96.617 266 8 1 2362 2627 18596688 18596952 8.630000e-120 440.0
40 TraesCS3A01G299600 chr2A 96.958 263 7 1 2365 2627 486908764 486909025 8.630000e-120 440.0
41 TraesCS3A01G299600 chr2A 80.541 185 33 3 1989 2171 313439112 313438929 3.530000e-29 139.0
42 TraesCS3A01G299600 chr1A 96.617 266 8 1 2362 2627 382256231 382255967 8.630000e-120 440.0
43 TraesCS3A01G299600 chr1A 96.591 264 8 1 2364 2627 518986319 518986581 1.120000e-118 436.0
44 TraesCS3A01G299600 chr6A 95.926 270 9 2 2359 2627 410575765 410575497 1.120000e-118 436.0
45 TraesCS3A01G299600 chr4A 95.255 274 11 2 2354 2627 532067605 532067876 1.440000e-117 433.0
46 TraesCS3A01G299600 chr7D 80.296 203 26 12 686 880 6445135 6445331 9.800000e-30 141.0
47 TraesCS3A01G299600 chr7D 78.919 185 32 6 1989 2170 491263553 491263373 4.590000e-23 119.0
48 TraesCS3A01G299600 chr6D 86.916 107 10 3 2026 2129 78519270 78519165 1.650000e-22 117.0
49 TraesCS3A01G299600 chr1D 86.567 67 8 1 991 1056 411523326 411523260 3.630000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G299600 chr3A 533993462 533996088 2626 True 4852.00 4852 100.0000 1 2627 1 chr3A.!!$R2 2626
1 TraesCS3A01G299600 chr3B 542928558 542930458 1900 False 1009.15 1947 86.1025 76 1818 2 chr3B.!!$F5 1742
2 TraesCS3A01G299600 chr3B 542896455 542898243 1788 False 972.00 1731 89.6025 76 1644 2 chr3B.!!$F4 1568
3 TraesCS3A01G299600 chr3B 543173431 543174541 1110 False 442.00 468 84.8620 321 1417 2 chr3B.!!$F7 1096
4 TraesCS3A01G299600 chr3B 543067716 543068855 1139 False 427.00 741 89.4230 1178 1988 2 chr3B.!!$F6 810
5 TraesCS3A01G299600 chr3B 543181483 543183648 2165 False 390.30 689 86.9420 183 1912 2 chr3B.!!$F8 1729
6 TraesCS3A01G299600 chr3D 416575006 416576516 1510 False 1661.00 1661 87.0160 389 1882 1 chr3D.!!$F1 1493
7 TraesCS3A01G299600 chr3D 416948948 416952614 3666 False 790.00 1075 84.0600 321 1988 2 chr3D.!!$F6 1667
8 TraesCS3A01G299600 chr3D 416912223 416915964 3741 False 382.00 497 88.3750 1 1636 3 chr3D.!!$F5 1635
9 TraesCS3A01G299600 chr3D 416563042 416566977 3935 False 210.50 252 81.3415 1 1894 2 chr3D.!!$F4 1893
10 TraesCS3A01G299600 chr5B 511292034 511293185 1151 False 917.00 917 81.9420 610 1721 1 chr5B.!!$F2 1111
11 TraesCS3A01G299600 chr5A 536970286 536971299 1013 False 874.00 874 83.0620 623 1617 1 chr5A.!!$F1 994
12 TraesCS3A01G299600 chr5D 423473618 423474975 1357 False 446.90 804 88.0420 610 1617 2 chr5D.!!$F1 1007

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 2793 0.108804 TGCGCTCTGTAGTTGTAGCC 60.109 55.0 9.73 0.0 0.0 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2337 8355 0.034756 ATGTGGCTACGCACAGTGAA 59.965 50.0 4.15 0.0 40.41 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 0.753867 TGGTGGAGTTGAAGCGTGTA 59.246 50.000 0.00 0.00 0.00 2.90
41 43 1.270094 TGGTGGAGTTGAAGCGTGTAG 60.270 52.381 0.00 0.00 0.00 2.74
49 51 2.870411 GTTGAAGCGTGTAGACCTTTGT 59.130 45.455 0.00 0.00 0.00 2.83
78 80 3.057946 GCTTCACCTCCAATTCTTGACAC 60.058 47.826 0.00 0.00 0.00 3.67
112 261 4.156455 TGATGAGTGGGCTCCTTAAATC 57.844 45.455 0.00 0.00 40.95 2.17
119 268 6.951198 TGAGTGGGCTCCTTAAATCAAAAATA 59.049 34.615 0.00 0.00 40.95 1.40
156 305 5.048782 GTCAACAATGTAACTCATCCAAGCA 60.049 40.000 0.00 0.00 35.48 3.91
157 306 5.048782 TCAACAATGTAACTCATCCAAGCAC 60.049 40.000 0.00 0.00 35.48 4.40
166 315 1.962807 TCATCCAAGCACCACAAAAGG 59.037 47.619 0.00 0.00 0.00 3.11
173 507 4.111916 CAAGCACCACAAAAGGTTAACTG 58.888 43.478 5.42 0.00 40.77 3.16
202 536 9.258826 CCAAACAATTCAGTCAAATCATTGTAA 57.741 29.630 0.00 0.00 37.13 2.41
209 543 6.409704 TCAGTCAAATCATTGTAAGCTAGCT 58.590 36.000 12.68 12.68 37.79 3.32
210 544 6.536582 TCAGTCAAATCATTGTAAGCTAGCTC 59.463 38.462 19.65 7.13 37.79 4.09
242 583 4.681978 GAGCCACCGCCAGTCGTT 62.682 66.667 0.00 0.00 36.19 3.85
253 594 3.102515 CAGTCGTTGGAGTGGTACG 57.897 57.895 0.00 0.00 39.49 3.67
254 595 0.388134 CAGTCGTTGGAGTGGTACGG 60.388 60.000 0.00 0.00 39.49 4.02
255 596 0.825010 AGTCGTTGGAGTGGTACGGT 60.825 55.000 0.00 0.00 36.06 4.83
258 599 0.942410 CGTTGGAGTGGTACGGTGTG 60.942 60.000 0.00 0.00 0.00 3.82
261 602 2.580601 GGAGTGGTACGGTGTGGCT 61.581 63.158 0.00 0.00 0.00 4.75
264 605 3.551407 TGGTACGGTGTGGCTGCA 61.551 61.111 0.50 0.00 0.00 4.41
306 2222 9.654919 AAGCTGGGGTTATTAATTATTACATGT 57.345 29.630 2.69 2.69 0.00 3.21
430 2355 2.797462 CGTATGCATGTGCGCGTGA 61.797 57.895 23.37 8.67 45.83 4.35
463 2390 3.303229 CGTTTTTGTCAACCTGCAAAGAC 59.697 43.478 0.00 0.00 36.77 3.01
466 2393 1.388547 TGTCAACCTGCAAAGACACC 58.611 50.000 6.20 0.00 36.20 4.16
518 2448 4.007940 GTGCTTCGCGGACGCAAA 62.008 61.111 17.35 3.45 38.47 3.68
559 2490 0.738975 CACTGCCATTGCCATGAGAG 59.261 55.000 0.00 0.00 36.33 3.20
583 2516 0.750182 CGGACTCTCCTCCCTCTGTC 60.750 65.000 0.00 0.00 33.30 3.51
585 2518 1.409661 GGACTCTCCTCCCTCTGTCTC 60.410 61.905 0.00 0.00 32.53 3.36
596 2529 1.495878 CTCTGTCTCTGTGTGTGTGC 58.504 55.000 0.00 0.00 0.00 4.57
598 2531 1.825285 CTGTCTCTGTGTGTGTGCGC 61.825 60.000 0.00 0.00 0.00 6.09
751 2793 0.108804 TGCGCTCTGTAGTTGTAGCC 60.109 55.000 9.73 0.00 0.00 3.93
763 2805 3.862991 GTAGCCCGAGCCCCTTCC 61.863 72.222 0.00 0.00 41.25 3.46
764 2806 4.408396 TAGCCCGAGCCCCTTCCA 62.408 66.667 0.00 0.00 41.25 3.53
765 2807 3.714078 TAGCCCGAGCCCCTTCCAT 62.714 63.158 0.00 0.00 41.25 3.41
856 3439 1.209261 TCCGGCATCTTGCTAATGTCA 59.791 47.619 0.00 0.00 44.28 3.58
858 3441 2.031420 CCGGCATCTTGCTAATGTCATG 60.031 50.000 0.00 0.00 44.28 3.07
860 3443 3.547413 CGGCATCTTGCTAATGTCATGTG 60.547 47.826 0.00 0.00 44.28 3.21
885 3865 5.491323 TTTCCTCTTCTTCTTTCTCCTCC 57.509 43.478 0.00 0.00 0.00 4.30
917 3897 4.523083 TCTTCTTTTATGTCGAATGGGGG 58.477 43.478 0.00 0.00 0.00 5.40
989 3983 5.251932 TGATCTCATCCTACTCCTACCTAGG 59.748 48.000 7.41 7.41 45.02 3.02
1188 6217 1.078918 GGTAACCACCTACCCGTGC 60.079 63.158 0.00 0.00 42.11 5.34
1196 6226 1.684734 CCTACCCGTGCACTACCCT 60.685 63.158 16.19 0.00 0.00 4.34
1214 6262 2.358957 CCTTCCGATGCTTGACATTGA 58.641 47.619 0.00 0.00 42.12 2.57
1230 6283 3.135348 ACATTGAGACCGATCCATCATGT 59.865 43.478 0.00 0.00 0.00 3.21
1275 6335 0.915364 AGTCCTCCTTCATTCTGCCC 59.085 55.000 0.00 0.00 0.00 5.36
1290 6350 2.580815 CCCTGCATCGAGCTGACA 59.419 61.111 12.79 0.94 44.15 3.58
1333 6393 2.811514 GCCCTCTGCATCGGGATGA 61.812 63.158 21.28 0.00 43.44 2.92
1348 6408 3.942377 ATGATGTGCTGCGCCCCAA 62.942 57.895 11.12 0.00 0.00 4.12
1431 6491 3.148279 CTCGCCTACCTCGCCCTT 61.148 66.667 0.00 0.00 0.00 3.95
1612 6678 1.065998 GGTGGGGCATGAAGTACGTAA 60.066 52.381 0.00 0.00 0.00 3.18
1644 6713 3.893326 TGATCATGTTCGTGGATCAGT 57.107 42.857 0.00 0.00 41.67 3.41
1645 6714 3.524541 TGATCATGTTCGTGGATCAGTG 58.475 45.455 0.00 0.00 41.67 3.66
1646 6715 3.195396 TGATCATGTTCGTGGATCAGTGA 59.805 43.478 0.00 0.00 41.67 3.41
1647 6716 3.893326 TCATGTTCGTGGATCAGTGAT 57.107 42.857 4.98 4.98 0.00 3.06
1648 6717 5.068987 TGATCATGTTCGTGGATCAGTGATA 59.931 40.000 5.38 0.00 41.67 2.15
1649 6718 5.535753 TCATGTTCGTGGATCAGTGATAT 57.464 39.130 5.38 0.00 0.00 1.63
1650 6719 5.917462 TCATGTTCGTGGATCAGTGATATT 58.083 37.500 5.38 0.00 0.00 1.28
1701 6792 1.202110 GCATTCATTCTGCTGTGACGG 60.202 52.381 0.00 0.00 36.68 4.79
1813 6927 6.920758 CGCTGGCTATATAATTAGACTGGATC 59.079 42.308 0.00 0.00 29.39 3.36
1818 6932 9.685828 GGCTATATAATTAGACTGGATCGATTC 57.314 37.037 0.00 0.00 0.00 2.52
1826 6940 8.927675 ATTAGACTGGATCGATTCTAGTAGTT 57.072 34.615 5.06 2.76 45.33 2.24
1829 6943 8.556213 AGACTGGATCGATTCTAGTAGTTATC 57.444 38.462 5.06 1.73 45.33 1.75
1830 6944 7.608761 AGACTGGATCGATTCTAGTAGTTATCC 59.391 40.741 5.06 0.00 45.33 2.59
1831 6945 7.463431 ACTGGATCGATTCTAGTAGTTATCCT 58.537 38.462 5.06 4.14 43.69 3.24
1907 7083 6.473455 GCTATATGTTGGTGAAATTGTTGCTC 59.527 38.462 0.00 0.00 0.00 4.26
1952 7970 8.663911 ACATGTTGTTTCTGGTGTTAAAAATTG 58.336 29.630 0.00 0.00 0.00 2.32
1988 8006 2.313172 GCATCTGCTGGCGTATCCG 61.313 63.158 0.00 0.00 37.80 4.18
1989 8007 1.363807 CATCTGCTGGCGTATCCGA 59.636 57.895 0.00 0.00 37.80 4.55
1990 8008 0.665670 CATCTGCTGGCGTATCCGAG 60.666 60.000 0.00 0.00 37.80 4.63
1991 8009 2.427540 ATCTGCTGGCGTATCCGAGC 62.428 60.000 0.00 0.00 38.58 5.03
1992 8010 3.430565 CTGCTGGCGTATCCGAGCA 62.431 63.158 0.00 0.00 42.55 4.26
1993 8011 2.202878 GCTGGCGTATCCGAGCAA 60.203 61.111 0.00 0.00 38.24 3.91
1994 8012 1.595382 GCTGGCGTATCCGAGCAAT 60.595 57.895 0.00 0.00 38.24 3.56
1995 8013 1.835483 GCTGGCGTATCCGAGCAATG 61.835 60.000 0.00 0.00 38.24 2.82
1996 8014 1.835483 CTGGCGTATCCGAGCAATGC 61.835 60.000 0.00 0.00 37.80 3.56
1997 8015 1.595382 GGCGTATCCGAGCAATGCT 60.595 57.895 7.79 7.79 43.88 3.79
1998 8016 0.319555 GGCGTATCCGAGCAATGCTA 60.320 55.000 8.12 0.00 39.88 3.49
1999 8017 0.784778 GCGTATCCGAGCAATGCTAC 59.215 55.000 8.12 0.71 39.88 3.58
2000 8018 1.868109 GCGTATCCGAGCAATGCTACA 60.868 52.381 8.12 0.00 39.88 2.74
2001 8019 1.787155 CGTATCCGAGCAATGCTACAC 59.213 52.381 8.12 1.03 39.88 2.90
2002 8020 2.798145 CGTATCCGAGCAATGCTACACA 60.798 50.000 8.12 0.00 39.88 3.72
2003 8021 1.656652 ATCCGAGCAATGCTACACAC 58.343 50.000 8.12 0.00 39.88 3.82
2004 8022 0.320050 TCCGAGCAATGCTACACACA 59.680 50.000 8.12 0.00 39.88 3.72
2005 8023 0.443869 CCGAGCAATGCTACACACAC 59.556 55.000 8.12 0.00 39.88 3.82
2006 8024 0.093535 CGAGCAATGCTACACACACG 59.906 55.000 8.12 1.21 39.88 4.49
2007 8025 0.443869 GAGCAATGCTACACACACGG 59.556 55.000 8.12 0.00 39.88 4.94
2008 8026 0.955428 AGCAATGCTACACACACGGG 60.955 55.000 5.69 0.00 36.99 5.28
2009 8027 1.501741 CAATGCTACACACACGGGC 59.498 57.895 0.00 0.00 0.00 6.13
2010 8028 0.955428 CAATGCTACACACACGGGCT 60.955 55.000 0.00 0.00 0.00 5.19
2011 8029 0.611200 AATGCTACACACACGGGCTA 59.389 50.000 0.00 0.00 0.00 3.93
2012 8030 0.611200 ATGCTACACACACGGGCTAA 59.389 50.000 0.00 0.00 0.00 3.09
2013 8031 0.611200 TGCTACACACACGGGCTAAT 59.389 50.000 0.00 0.00 0.00 1.73
2014 8032 1.002659 TGCTACACACACGGGCTAATT 59.997 47.619 0.00 0.00 0.00 1.40
2015 8033 2.081462 GCTACACACACGGGCTAATTT 58.919 47.619 0.00 0.00 0.00 1.82
2016 8034 2.486592 GCTACACACACGGGCTAATTTT 59.513 45.455 0.00 0.00 0.00 1.82
2017 8035 3.057806 GCTACACACACGGGCTAATTTTT 60.058 43.478 0.00 0.00 0.00 1.94
2018 8036 4.154556 GCTACACACACGGGCTAATTTTTA 59.845 41.667 0.00 0.00 0.00 1.52
2019 8037 4.492791 ACACACACGGGCTAATTTTTAC 57.507 40.909 0.00 0.00 0.00 2.01
2020 8038 3.253921 ACACACACGGGCTAATTTTTACC 59.746 43.478 0.00 0.00 0.00 2.85
2030 8048 6.424683 GGGCTAATTTTTACCGAGATTTACG 58.575 40.000 0.00 0.00 0.00 3.18
2037 8055 2.914379 CCGAGATTTACGGGGATGC 58.086 57.895 0.00 0.00 45.65 3.91
2038 8056 0.393077 CCGAGATTTACGGGGATGCT 59.607 55.000 0.00 0.00 45.65 3.79
2039 8057 1.502231 CGAGATTTACGGGGATGCTG 58.498 55.000 0.00 0.00 0.00 4.41
2040 8058 1.068588 CGAGATTTACGGGGATGCTGA 59.931 52.381 0.00 0.00 0.00 4.26
2041 8059 2.760374 GAGATTTACGGGGATGCTGAG 58.240 52.381 0.00 0.00 0.00 3.35
2042 8060 1.202698 AGATTTACGGGGATGCTGAGC 60.203 52.381 0.00 0.00 0.00 4.26
2043 8061 0.839946 ATTTACGGGGATGCTGAGCT 59.160 50.000 5.83 0.00 0.00 4.09
2044 8062 0.107703 TTTACGGGGATGCTGAGCTG 60.108 55.000 5.83 0.00 0.00 4.24
2045 8063 1.971505 TTACGGGGATGCTGAGCTGG 61.972 60.000 5.83 0.00 0.00 4.85
2046 8064 4.559063 CGGGGATGCTGAGCTGGG 62.559 72.222 5.83 0.00 0.00 4.45
2047 8065 3.092511 GGGGATGCTGAGCTGGGA 61.093 66.667 5.83 0.00 0.00 4.37
2048 8066 2.459086 GGGGATGCTGAGCTGGGAT 61.459 63.158 5.83 0.00 0.00 3.85
2049 8067 1.130054 GGGGATGCTGAGCTGGGATA 61.130 60.000 5.83 0.00 0.00 2.59
2050 8068 0.767375 GGGATGCTGAGCTGGGATAA 59.233 55.000 5.83 0.00 0.00 1.75
2051 8069 1.353694 GGGATGCTGAGCTGGGATAAT 59.646 52.381 5.83 0.00 0.00 1.28
2052 8070 2.224967 GGGATGCTGAGCTGGGATAATT 60.225 50.000 5.83 0.00 0.00 1.40
2053 8071 3.494332 GGATGCTGAGCTGGGATAATTT 58.506 45.455 5.83 0.00 0.00 1.82
2054 8072 3.255149 GGATGCTGAGCTGGGATAATTTG 59.745 47.826 5.83 0.00 0.00 2.32
2055 8073 3.650281 TGCTGAGCTGGGATAATTTGA 57.350 42.857 5.83 0.00 0.00 2.69
2056 8074 4.174704 TGCTGAGCTGGGATAATTTGAT 57.825 40.909 5.83 0.00 0.00 2.57
2057 8075 4.539726 TGCTGAGCTGGGATAATTTGATT 58.460 39.130 5.83 0.00 0.00 2.57
2058 8076 4.340097 TGCTGAGCTGGGATAATTTGATTG 59.660 41.667 5.83 0.00 0.00 2.67
2059 8077 4.261909 GCTGAGCTGGGATAATTTGATTGG 60.262 45.833 0.00 0.00 0.00 3.16
2060 8078 5.128033 TGAGCTGGGATAATTTGATTGGA 57.872 39.130 0.00 0.00 0.00 3.53
2061 8079 5.517924 TGAGCTGGGATAATTTGATTGGAA 58.482 37.500 0.00 0.00 0.00 3.53
2062 8080 5.595542 TGAGCTGGGATAATTTGATTGGAAG 59.404 40.000 0.00 0.00 0.00 3.46
2063 8081 4.897670 AGCTGGGATAATTTGATTGGAAGG 59.102 41.667 0.00 0.00 0.00 3.46
2064 8082 4.895297 GCTGGGATAATTTGATTGGAAGGA 59.105 41.667 0.00 0.00 0.00 3.36
2065 8083 5.363580 GCTGGGATAATTTGATTGGAAGGAA 59.636 40.000 0.00 0.00 0.00 3.36
2066 8084 6.127083 GCTGGGATAATTTGATTGGAAGGAAA 60.127 38.462 0.00 0.00 0.00 3.13
2067 8085 7.422465 TGGGATAATTTGATTGGAAGGAAAG 57.578 36.000 0.00 0.00 0.00 2.62
2068 8086 6.383726 TGGGATAATTTGATTGGAAGGAAAGG 59.616 38.462 0.00 0.00 0.00 3.11
2069 8087 6.183361 GGGATAATTTGATTGGAAGGAAAGGG 60.183 42.308 0.00 0.00 0.00 3.95
2070 8088 6.183361 GGATAATTTGATTGGAAGGAAAGGGG 60.183 42.308 0.00 0.00 0.00 4.79
2071 8089 3.913370 TTTGATTGGAAGGAAAGGGGA 57.087 42.857 0.00 0.00 0.00 4.81
2072 8090 4.418395 TTTGATTGGAAGGAAAGGGGAT 57.582 40.909 0.00 0.00 0.00 3.85
2073 8091 3.386932 TGATTGGAAGGAAAGGGGATG 57.613 47.619 0.00 0.00 0.00 3.51
2074 8092 2.925653 TGATTGGAAGGAAAGGGGATGA 59.074 45.455 0.00 0.00 0.00 2.92
2075 8093 3.053395 TGATTGGAAGGAAAGGGGATGAG 60.053 47.826 0.00 0.00 0.00 2.90
2076 8094 1.298953 TGGAAGGAAAGGGGATGAGG 58.701 55.000 0.00 0.00 0.00 3.86
2077 8095 0.553333 GGAAGGAAAGGGGATGAGGG 59.447 60.000 0.00 0.00 0.00 4.30
2078 8096 0.553333 GAAGGAAAGGGGATGAGGGG 59.447 60.000 0.00 0.00 0.00 4.79
2079 8097 1.584717 AAGGAAAGGGGATGAGGGGC 61.585 60.000 0.00 0.00 0.00 5.80
2080 8098 2.603580 GAAAGGGGATGAGGGGCC 59.396 66.667 0.00 0.00 0.00 5.80
2081 8099 3.029981 AAAGGGGATGAGGGGCCC 61.030 66.667 17.12 17.12 43.91 5.80
2082 8100 3.928172 AAAGGGGATGAGGGGCCCA 62.928 63.158 27.72 4.83 46.57 5.36
2085 8103 4.129148 GGGATGAGGGGCCCACAC 62.129 72.222 25.63 17.57 44.07 3.82
2086 8104 4.129148 GGATGAGGGGCCCACACC 62.129 72.222 25.63 22.08 0.00 4.16
2094 8112 3.909651 GGCCCACACCCCCTGAAA 61.910 66.667 0.00 0.00 0.00 2.69
2095 8113 2.200092 GCCCACACCCCCTGAAAA 59.800 61.111 0.00 0.00 0.00 2.29
2096 8114 1.229177 GCCCACACCCCCTGAAAAT 60.229 57.895 0.00 0.00 0.00 1.82
2097 8115 1.257750 GCCCACACCCCCTGAAAATC 61.258 60.000 0.00 0.00 0.00 2.17
2098 8116 0.114168 CCCACACCCCCTGAAAATCA 59.886 55.000 0.00 0.00 0.00 2.57
2099 8117 1.549203 CCACACCCCCTGAAAATCAG 58.451 55.000 0.32 0.32 43.91 2.90
2106 8124 3.924507 CTGAAAATCAGGGGCCGG 58.075 61.111 0.00 0.00 40.71 6.13
2107 8125 1.000896 CTGAAAATCAGGGGCCGGT 60.001 57.895 1.90 0.00 40.71 5.28
2108 8126 1.304052 TGAAAATCAGGGGCCGGTG 60.304 57.895 1.90 0.00 0.00 4.94
2109 8127 1.001393 GAAAATCAGGGGCCGGTGA 60.001 57.895 1.90 9.43 0.00 4.02
2110 8128 0.610785 GAAAATCAGGGGCCGGTGAA 60.611 55.000 10.90 0.00 0.00 3.18
2111 8129 0.611896 AAAATCAGGGGCCGGTGAAG 60.612 55.000 10.90 0.00 0.00 3.02
2112 8130 1.497309 AAATCAGGGGCCGGTGAAGA 61.497 55.000 10.90 0.00 0.00 2.87
2113 8131 1.281925 AATCAGGGGCCGGTGAAGAT 61.282 55.000 10.90 0.00 0.00 2.40
2114 8132 1.281925 ATCAGGGGCCGGTGAAGATT 61.282 55.000 10.90 0.00 0.00 2.40
2115 8133 1.000896 CAGGGGCCGGTGAAGATTT 60.001 57.895 1.90 0.00 0.00 2.17
2116 8134 1.000896 AGGGGCCGGTGAAGATTTG 60.001 57.895 1.90 0.00 0.00 2.32
2117 8135 1.304134 GGGGCCGGTGAAGATTTGT 60.304 57.895 1.90 0.00 0.00 2.83
2118 8136 0.898326 GGGGCCGGTGAAGATTTGTT 60.898 55.000 1.90 0.00 0.00 2.83
2119 8137 1.614850 GGGGCCGGTGAAGATTTGTTA 60.615 52.381 1.90 0.00 0.00 2.41
2120 8138 2.164338 GGGCCGGTGAAGATTTGTTAA 58.836 47.619 1.90 0.00 0.00 2.01
2121 8139 2.094906 GGGCCGGTGAAGATTTGTTAAC 60.095 50.000 1.90 0.00 0.00 2.01
2122 8140 2.413634 GGCCGGTGAAGATTTGTTAACG 60.414 50.000 1.90 0.00 0.00 3.18
2123 8141 2.481185 GCCGGTGAAGATTTGTTAACGA 59.519 45.455 1.90 0.00 0.00 3.85
2124 8142 3.058777 GCCGGTGAAGATTTGTTAACGAA 60.059 43.478 10.70 10.70 0.00 3.85
2125 8143 4.708601 CCGGTGAAGATTTGTTAACGAAG 58.291 43.478 13.59 0.00 0.00 3.79
2126 8144 4.449743 CCGGTGAAGATTTGTTAACGAAGA 59.550 41.667 13.59 0.00 0.00 2.87
2127 8145 5.389516 CCGGTGAAGATTTGTTAACGAAGAG 60.390 44.000 13.59 0.31 0.00 2.85
2128 8146 5.404366 CGGTGAAGATTTGTTAACGAAGAGA 59.596 40.000 13.59 0.00 0.00 3.10
2129 8147 6.090898 CGGTGAAGATTTGTTAACGAAGAGAT 59.909 38.462 13.59 0.00 0.00 2.75
2130 8148 7.237173 GGTGAAGATTTGTTAACGAAGAGATG 58.763 38.462 13.59 0.00 0.00 2.90
2131 8149 7.095187 GGTGAAGATTTGTTAACGAAGAGATGT 60.095 37.037 13.59 0.00 0.00 3.06
2132 8150 7.742089 GTGAAGATTTGTTAACGAAGAGATGTG 59.258 37.037 13.59 0.00 0.00 3.21
2133 8151 7.441157 TGAAGATTTGTTAACGAAGAGATGTGT 59.559 33.333 13.59 0.00 0.00 3.72
2134 8152 8.827177 AAGATTTGTTAACGAAGAGATGTGTA 57.173 30.769 13.59 0.00 0.00 2.90
2135 8153 8.827177 AGATTTGTTAACGAAGAGATGTGTAA 57.173 30.769 13.59 0.00 0.00 2.41
2136 8154 9.268268 AGATTTGTTAACGAAGAGATGTGTAAA 57.732 29.630 13.59 0.00 0.00 2.01
2137 8155 9.872757 GATTTGTTAACGAAGAGATGTGTAAAA 57.127 29.630 13.59 0.00 0.00 1.52
2138 8156 9.659830 ATTTGTTAACGAAGAGATGTGTAAAAC 57.340 29.630 13.59 0.00 0.00 2.43
2139 8157 7.773864 TGTTAACGAAGAGATGTGTAAAACA 57.226 32.000 0.26 0.00 44.79 2.83
2153 8171 6.354039 GTGTAAAACACCCATATTACTCCG 57.646 41.667 0.00 0.00 43.05 4.63
2154 8172 5.876460 GTGTAAAACACCCATATTACTCCGT 59.124 40.000 0.00 0.00 43.05 4.69
2155 8173 6.036408 GTGTAAAACACCCATATTACTCCGTC 59.964 42.308 0.00 0.00 43.05 4.79
2156 8174 4.829872 AAACACCCATATTACTCCGTCA 57.170 40.909 0.00 0.00 0.00 4.35
2157 8175 4.402056 AACACCCATATTACTCCGTCAG 57.598 45.455 0.00 0.00 0.00 3.51
2158 8176 3.371965 ACACCCATATTACTCCGTCAGT 58.628 45.455 0.00 0.00 39.41 3.41
2159 8177 3.383825 ACACCCATATTACTCCGTCAGTC 59.616 47.826 0.00 0.00 36.43 3.51
2160 8178 3.637229 CACCCATATTACTCCGTCAGTCT 59.363 47.826 0.00 0.00 36.43 3.24
2161 8179 4.825634 CACCCATATTACTCCGTCAGTCTA 59.174 45.833 0.00 0.00 36.43 2.59
2162 8180 5.048643 CACCCATATTACTCCGTCAGTCTAG 60.049 48.000 0.00 0.00 36.43 2.43
2163 8181 5.163120 ACCCATATTACTCCGTCAGTCTAGA 60.163 44.000 0.00 0.00 36.43 2.43
2164 8182 5.768662 CCCATATTACTCCGTCAGTCTAGAA 59.231 44.000 0.00 0.00 36.43 2.10
2165 8183 6.434652 CCCATATTACTCCGTCAGTCTAGAAT 59.565 42.308 0.00 0.00 36.43 2.40
2166 8184 7.039644 CCCATATTACTCCGTCAGTCTAGAATT 60.040 40.741 0.00 0.00 36.43 2.17
2167 8185 8.361139 CCATATTACTCCGTCAGTCTAGAATTT 58.639 37.037 0.00 0.00 36.43 1.82
2168 8186 9.751542 CATATTACTCCGTCAGTCTAGAATTTT 57.248 33.333 0.00 0.00 36.43 1.82
2169 8187 9.968870 ATATTACTCCGTCAGTCTAGAATTTTC 57.031 33.333 0.00 0.00 36.43 2.29
2170 8188 5.723672 ACTCCGTCAGTCTAGAATTTTCA 57.276 39.130 0.00 0.00 0.00 2.69
2171 8189 5.715070 ACTCCGTCAGTCTAGAATTTTCAG 58.285 41.667 0.00 0.00 0.00 3.02
2172 8190 5.073311 TCCGTCAGTCTAGAATTTTCAGG 57.927 43.478 0.00 0.00 0.00 3.86
2173 8191 3.619038 CCGTCAGTCTAGAATTTTCAGGC 59.381 47.826 0.00 0.00 0.00 4.85
2174 8192 3.304559 CGTCAGTCTAGAATTTTCAGGCG 59.695 47.826 0.00 0.00 0.00 5.52
2175 8193 4.246458 GTCAGTCTAGAATTTTCAGGCGT 58.754 43.478 0.00 0.00 0.00 5.68
2176 8194 5.408356 GTCAGTCTAGAATTTTCAGGCGTA 58.592 41.667 0.00 0.00 0.00 4.42
2177 8195 6.043411 GTCAGTCTAGAATTTTCAGGCGTAT 58.957 40.000 0.00 0.00 0.00 3.06
2178 8196 6.199342 GTCAGTCTAGAATTTTCAGGCGTATC 59.801 42.308 0.00 0.00 0.00 2.24
2179 8197 5.463724 CAGTCTAGAATTTTCAGGCGTATCC 59.536 44.000 0.00 0.00 0.00 2.59
2183 8201 4.446371 AGAATTTTCAGGCGTATCCTCTG 58.554 43.478 0.00 0.00 45.52 3.35
2186 8204 0.325296 TTCAGGCGTATCCTCTGGGT 60.325 55.000 0.00 0.00 45.52 4.51
2188 8206 0.179073 CAGGCGTATCCTCTGGGTTG 60.179 60.000 0.00 0.00 45.52 3.77
2209 8227 3.520721 TGAGATTGAGTGACCCATGTGAT 59.479 43.478 0.00 0.00 0.00 3.06
2223 8241 0.734309 TGTGATCATGCAATCACGGC 59.266 50.000 20.99 4.42 42.25 5.68
2253 8271 2.417719 GGGACGCTATGGCTTAGAATG 58.582 52.381 11.29 3.13 36.09 2.67
2263 8281 1.440145 GCTTAGAATGCCCTCGTGCC 61.440 60.000 0.00 0.00 0.00 5.01
2266 8284 0.107703 TAGAATGCCCTCGTGCCAAG 60.108 55.000 0.00 0.00 0.00 3.61
2282 8300 1.615392 CCAAGTGAGGCCCTTCTTTTG 59.385 52.381 0.00 0.89 0.00 2.44
2294 8312 4.004982 CCCTTCTTTTGATGCCCATTTTG 58.995 43.478 0.00 0.00 0.00 2.44
2296 8314 3.056588 TCTTTTGATGCCCATTTTGCC 57.943 42.857 0.00 0.00 0.00 4.52
2310 8328 3.467374 TTTTGCCTTTGGAATCCACAC 57.533 42.857 0.00 0.00 30.78 3.82
2313 8331 1.595093 GCCTTTGGAATCCACACCCG 61.595 60.000 0.00 0.00 30.78 5.28
2318 8336 1.376812 GGAATCCACACCCGGACAC 60.377 63.158 0.73 0.00 38.07 3.67
2324 8342 1.445942 CACACCCGGACACTTGACT 59.554 57.895 0.73 0.00 0.00 3.41
2328 8346 0.179056 ACCCGGACACTTGACTTGTG 60.179 55.000 0.73 0.00 40.87 3.33
2334 8352 1.290203 ACACTTGACTTGTGTGAGCG 58.710 50.000 0.00 0.00 45.57 5.03
2335 8353 0.583438 CACTTGACTTGTGTGAGCGG 59.417 55.000 0.00 0.00 33.95 5.52
2336 8354 0.178068 ACTTGACTTGTGTGAGCGGT 59.822 50.000 0.00 0.00 0.00 5.68
2337 8355 1.299541 CTTGACTTGTGTGAGCGGTT 58.700 50.000 0.00 0.00 0.00 4.44
2339 8357 1.295792 TGACTTGTGTGAGCGGTTTC 58.704 50.000 0.00 0.00 0.00 2.78
2341 8359 1.003866 GACTTGTGTGAGCGGTTTCAC 60.004 52.381 13.47 13.47 46.02 3.18
2342 8360 1.299541 CTTGTGTGAGCGGTTTCACT 58.700 50.000 18.50 0.00 46.00 3.41
2343 8361 1.003545 CTTGTGTGAGCGGTTTCACTG 60.004 52.381 18.50 10.93 46.00 3.66
2344 8362 0.107897 TGTGTGAGCGGTTTCACTGT 60.108 50.000 18.50 0.00 46.00 3.55
2347 8439 2.243957 TGAGCGGTTTCACTGTGCG 61.244 57.895 2.12 1.99 0.00 5.34
2364 8456 3.267900 CGTAGCCACATCCGGTTAG 57.732 57.895 0.00 0.00 0.00 2.34
2365 8457 0.249322 CGTAGCCACATCCGGTTAGG 60.249 60.000 0.00 0.51 42.97 2.69
2366 8458 0.532196 GTAGCCACATCCGGTTAGGC 60.532 60.000 17.90 17.90 45.54 3.93
2367 8459 1.692173 TAGCCACATCCGGTTAGGCC 61.692 60.000 20.57 0.00 46.35 5.19
2369 8461 1.146263 CCACATCCGGTTAGGCCTC 59.854 63.158 9.68 0.00 40.77 4.70
2370 8462 1.146263 CACATCCGGTTAGGCCTCC 59.854 63.158 9.68 3.89 40.77 4.30
2371 8463 1.003051 ACATCCGGTTAGGCCTCCT 59.997 57.895 9.68 0.00 40.77 3.69
2373 8465 0.546598 CATCCGGTTAGGCCTCCTTT 59.453 55.000 9.68 0.00 40.77 3.11
2374 8466 0.546598 ATCCGGTTAGGCCTCCTTTG 59.453 55.000 9.68 0.00 40.77 2.77
2375 8467 1.077716 CCGGTTAGGCCTCCTTTGG 60.078 63.158 9.68 1.89 34.61 3.28
2376 8468 1.683441 CGGTTAGGCCTCCTTTGGT 59.317 57.895 9.68 0.00 34.61 3.67
2377 8469 0.037734 CGGTTAGGCCTCCTTTGGTT 59.962 55.000 9.68 0.00 34.61 3.67
2378 8470 1.546998 CGGTTAGGCCTCCTTTGGTTT 60.547 52.381 9.68 0.00 34.61 3.27
2380 8472 3.353557 GGTTAGGCCTCCTTTGGTTTAG 58.646 50.000 9.68 0.00 34.61 1.85
2394 10566 7.834181 TCCTTTGGTTTAGAGGAATTTCATAGG 59.166 37.037 0.00 0.00 36.67 2.57
2405 10577 9.859152 AGAGGAATTTCATAGGAATTTTAGAGG 57.141 33.333 0.00 0.00 31.93 3.69
2446 10618 3.895704 TTTCCTTTAGAGCCCTTTGGT 57.104 42.857 0.00 0.00 0.00 3.67
2447 10619 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
2448 10620 3.434940 TCCTTTAGAGCCCTTTGGTTC 57.565 47.619 0.00 0.00 41.91 3.62
2449 10621 2.714250 TCCTTTAGAGCCCTTTGGTTCA 59.286 45.455 0.00 0.00 43.89 3.18
2450 10622 3.333680 TCCTTTAGAGCCCTTTGGTTCAT 59.666 43.478 0.00 0.00 43.89 2.57
2451 10623 4.538490 TCCTTTAGAGCCCTTTGGTTCATA 59.462 41.667 0.00 0.00 43.89 2.15
2452 10624 4.884164 CCTTTAGAGCCCTTTGGTTCATAG 59.116 45.833 0.00 0.00 43.89 2.23
2453 10625 4.503714 TTAGAGCCCTTTGGTTCATAGG 57.496 45.455 0.00 0.00 43.89 2.57
2454 10626 2.562296 AGAGCCCTTTGGTTCATAGGA 58.438 47.619 6.07 0.00 43.89 2.94
2455 10627 2.919602 AGAGCCCTTTGGTTCATAGGAA 59.080 45.455 6.07 0.00 43.89 3.36
2456 10628 3.529319 AGAGCCCTTTGGTTCATAGGAAT 59.471 43.478 6.07 0.00 43.89 3.01
2457 10629 3.633986 GAGCCCTTTGGTTCATAGGAATG 59.366 47.826 6.07 0.00 41.28 2.67
2458 10630 2.695147 GCCCTTTGGTTCATAGGAATGG 59.305 50.000 6.07 0.00 35.14 3.16
2459 10631 3.627237 GCCCTTTGGTTCATAGGAATGGA 60.627 47.826 6.07 0.00 35.14 3.41
2460 10632 4.808042 CCCTTTGGTTCATAGGAATGGAT 58.192 43.478 6.07 0.00 35.14 3.41
2461 10633 5.211201 CCCTTTGGTTCATAGGAATGGATT 58.789 41.667 6.07 0.00 35.14 3.01
2462 10634 5.302823 CCCTTTGGTTCATAGGAATGGATTC 59.697 44.000 6.07 0.00 35.14 2.52
2477 10649 6.649041 AATGGATTCCTATTCCTCCATAGG 57.351 41.667 3.95 0.85 45.51 2.57
2504 10676 7.684317 TGGTTACTATCCTCCACATTTCATA 57.316 36.000 0.00 0.00 0.00 2.15
2506 10678 7.162082 GGTTACTATCCTCCACATTTCATAGG 58.838 42.308 0.00 0.00 0.00 2.57
2507 10679 7.016268 GGTTACTATCCTCCACATTTCATAGGA 59.984 40.741 0.00 0.00 40.50 2.94
2510 10682 7.872138 ACTATCCTCCACATTTCATAGGAAAA 58.128 34.615 6.65 0.00 45.52 2.29
2515 10687 9.540538 TCCTCCACATTTCATAGGAAAATAAAA 57.459 29.630 6.65 0.00 45.52 1.52
2562 10734 7.733402 AAATTCCTTTGATGTCAACCAAATG 57.267 32.000 0.00 3.42 35.28 2.32
2575 10747 5.841810 TCAACCAAATGACATCTTGTTTCC 58.158 37.500 0.00 0.00 0.00 3.13
2576 10748 5.598005 TCAACCAAATGACATCTTGTTTCCT 59.402 36.000 0.00 0.00 0.00 3.36
2580 10752 7.830739 ACCAAATGACATCTTGTTTCCTATTC 58.169 34.615 0.00 0.00 0.00 1.75
2581 10753 7.093771 ACCAAATGACATCTTGTTTCCTATTCC 60.094 37.037 0.00 0.00 0.00 3.01
2583 10755 9.177608 CAAATGACATCTTGTTTCCTATTCCTA 57.822 33.333 0.00 0.00 0.00 2.94
2584 10756 8.738645 AATGACATCTTGTTTCCTATTCCTAC 57.261 34.615 0.00 0.00 0.00 3.18
2586 10758 7.556844 TGACATCTTGTTTCCTATTCCTACTC 58.443 38.462 0.00 0.00 0.00 2.59
2587 10759 7.180229 TGACATCTTGTTTCCTATTCCTACTCA 59.820 37.037 0.00 0.00 0.00 3.41
2588 10760 8.095452 ACATCTTGTTTCCTATTCCTACTCAT 57.905 34.615 0.00 0.00 0.00 2.90
2589 10761 9.213777 ACATCTTGTTTCCTATTCCTACTCATA 57.786 33.333 0.00 0.00 0.00 2.15
2590 10762 9.703892 CATCTTGTTTCCTATTCCTACTCATAG 57.296 37.037 0.00 0.00 0.00 2.23
2591 10763 9.661954 ATCTTGTTTCCTATTCCTACTCATAGA 57.338 33.333 0.00 0.00 0.00 1.98
2592 10764 9.488762 TCTTGTTTCCTATTCCTACTCATAGAA 57.511 33.333 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 2.092429 TGAAGCTCCACAACAAAGGTCT 60.092 45.455 0.00 0.00 0.00 3.85
41 43 2.033424 GTGAAGCTCCACAACAAAGGTC 59.967 50.000 0.00 0.00 37.04 3.85
49 51 2.538790 TGGAGGTGAAGCTCCACAA 58.461 52.632 23.88 5.21 44.02 3.33
67 69 9.349713 TCAACTTATTTACCTGTGTCAAGAATT 57.650 29.630 0.00 0.00 0.00 2.17
78 80 5.066505 GCCCACTCATCAACTTATTTACCTG 59.933 44.000 0.00 0.00 0.00 4.00
119 268 8.617809 GTTACATTGTTGACGGTTATCCATTAT 58.382 33.333 0.00 0.00 0.00 1.28
128 277 4.454504 GGATGAGTTACATTGTTGACGGTT 59.545 41.667 0.00 0.00 39.56 4.44
173 507 7.951530 ATGATTTGACTGAATTGTTTGGTTC 57.048 32.000 0.00 0.00 0.00 3.62
242 583 2.874664 GCCACACCGTACCACTCCA 61.875 63.158 0.00 0.00 0.00 3.86
430 2355 7.274686 CAGGTTGACAAAAACGTGAAAACTTAT 59.725 33.333 4.24 0.00 44.70 1.73
518 2448 2.140717 CAAAGGAAACTACCGCGAAGT 58.859 47.619 8.23 8.14 42.68 3.01
559 2490 2.059190 GGGAGGAGAGTCCGGTTCC 61.059 68.421 0.00 5.14 42.75 3.62
583 2516 4.360027 GCGCGCACACACACAGAG 62.360 66.667 29.10 0.00 0.00 3.35
751 2793 2.615227 CTTGGATGGAAGGGGCTCGG 62.615 65.000 0.00 0.00 0.00 4.63
856 3439 6.067350 AGAAAGAAGAAGAGGAAAAGCACAT 58.933 36.000 0.00 0.00 0.00 3.21
858 3441 5.049060 GGAGAAAGAAGAAGAGGAAAAGCAC 60.049 44.000 0.00 0.00 0.00 4.40
860 3443 5.312895 AGGAGAAAGAAGAAGAGGAAAAGC 58.687 41.667 0.00 0.00 0.00 3.51
885 3865 7.316640 TCGACATAAAAGAAGAAGAAGAGGAG 58.683 38.462 0.00 0.00 0.00 3.69
917 3897 9.980780 GTTAGTTTCTCTTCTCTAATTTCATGC 57.019 33.333 0.00 0.00 0.00 4.06
1188 6217 1.207089 TCAAGCATCGGAAGGGTAGTG 59.793 52.381 0.00 0.00 0.00 2.74
1196 6226 3.002791 GTCTCAATGTCAAGCATCGGAA 58.997 45.455 0.00 0.00 36.67 4.30
1214 6262 0.107456 GGCACATGATGGATCGGTCT 59.893 55.000 0.00 0.00 0.00 3.85
1230 6283 0.322456 GACACCATACCAGCTTGGCA 60.322 55.000 1.89 0.00 42.67 4.92
1275 6335 1.138636 CGTCTGTCAGCTCGATGCAG 61.139 60.000 10.32 6.81 45.94 4.41
1612 6678 6.536582 CACGAACATGATCAGAAGAAATAGGT 59.463 38.462 0.00 0.00 0.00 3.08
1644 6713 5.215845 TCATCAGTACCTGGTGGAATATCA 58.784 41.667 10.23 0.00 42.33 2.15
1645 6714 5.540337 TCTCATCAGTACCTGGTGGAATATC 59.460 44.000 10.23 0.00 42.33 1.63
1646 6715 5.467738 TCTCATCAGTACCTGGTGGAATAT 58.532 41.667 10.23 0.00 42.33 1.28
1647 6716 4.878968 TCTCATCAGTACCTGGTGGAATA 58.121 43.478 10.23 0.00 42.33 1.75
1648 6717 3.708631 CTCTCATCAGTACCTGGTGGAAT 59.291 47.826 10.23 0.00 42.33 3.01
1649 6718 3.099905 CTCTCATCAGTACCTGGTGGAA 58.900 50.000 10.23 0.00 42.33 3.53
1650 6719 2.739943 CTCTCATCAGTACCTGGTGGA 58.260 52.381 10.23 4.87 42.33 4.02
1701 6792 2.953466 TACGGCACTACTCCATCAAC 57.047 50.000 0.00 0.00 0.00 3.18
1818 6932 9.756571 AGGTGGAATACATAGGATAACTACTAG 57.243 37.037 0.00 0.00 33.70 2.57
1829 6943 9.853177 AGAGAAAATTAAGGTGGAATACATAGG 57.147 33.333 0.00 0.00 0.00 2.57
1840 6957 8.425577 ACGATCACATAGAGAAAATTAAGGTG 57.574 34.615 0.00 0.00 0.00 4.00
1907 7083 3.807553 TGTGTGCATGGATATACACTGG 58.192 45.455 7.12 0.00 42.80 4.00
1988 8006 0.443869 CCGTGTGTGTAGCATTGCTC 59.556 55.000 15.81 7.72 40.44 4.26
1989 8007 0.955428 CCCGTGTGTGTAGCATTGCT 60.955 55.000 16.63 16.63 43.41 3.91
1990 8008 1.501741 CCCGTGTGTGTAGCATTGC 59.498 57.895 0.00 0.00 0.00 3.56
1991 8009 0.955428 AGCCCGTGTGTGTAGCATTG 60.955 55.000 0.00 0.00 0.00 2.82
1992 8010 0.611200 TAGCCCGTGTGTGTAGCATT 59.389 50.000 0.00 0.00 0.00 3.56
1993 8011 0.611200 TTAGCCCGTGTGTGTAGCAT 59.389 50.000 0.00 0.00 0.00 3.79
1994 8012 0.611200 ATTAGCCCGTGTGTGTAGCA 59.389 50.000 0.00 0.00 0.00 3.49
1995 8013 1.734163 AATTAGCCCGTGTGTGTAGC 58.266 50.000 0.00 0.00 0.00 3.58
1996 8014 4.759516 AAAAATTAGCCCGTGTGTGTAG 57.240 40.909 0.00 0.00 0.00 2.74
1997 8015 4.455190 GGTAAAAATTAGCCCGTGTGTGTA 59.545 41.667 0.00 0.00 0.00 2.90
1998 8016 3.253921 GGTAAAAATTAGCCCGTGTGTGT 59.746 43.478 0.00 0.00 0.00 3.72
1999 8017 3.668491 CGGTAAAAATTAGCCCGTGTGTG 60.668 47.826 0.00 0.00 34.10 3.82
2000 8018 2.485038 CGGTAAAAATTAGCCCGTGTGT 59.515 45.455 0.00 0.00 34.10 3.72
2001 8019 2.743126 TCGGTAAAAATTAGCCCGTGTG 59.257 45.455 0.00 0.00 39.62 3.82
2002 8020 3.004862 CTCGGTAAAAATTAGCCCGTGT 58.995 45.455 0.00 0.00 39.62 4.49
2003 8021 3.264104 TCTCGGTAAAAATTAGCCCGTG 58.736 45.455 0.00 0.00 39.62 4.94
2004 8022 3.615224 TCTCGGTAAAAATTAGCCCGT 57.385 42.857 0.00 0.00 39.62 5.28
2005 8023 5.494632 AAATCTCGGTAAAAATTAGCCCG 57.505 39.130 0.00 0.00 39.98 6.13
2006 8024 6.424683 CGTAAATCTCGGTAAAAATTAGCCC 58.575 40.000 0.00 0.00 0.00 5.19
2007 8025 6.424683 CCGTAAATCTCGGTAAAAATTAGCC 58.575 40.000 0.00 0.00 42.62 3.93
2008 8026 6.424683 CCCGTAAATCTCGGTAAAAATTAGC 58.575 40.000 3.78 0.00 45.63 3.09
2009 8027 6.762661 TCCCCGTAAATCTCGGTAAAAATTAG 59.237 38.462 3.78 0.00 45.63 1.73
2010 8028 6.648192 TCCCCGTAAATCTCGGTAAAAATTA 58.352 36.000 3.78 0.00 45.63 1.40
2011 8029 5.499313 TCCCCGTAAATCTCGGTAAAAATT 58.501 37.500 3.78 0.00 45.63 1.82
2012 8030 5.101648 TCCCCGTAAATCTCGGTAAAAAT 57.898 39.130 3.78 0.00 45.63 1.82
2013 8031 4.550076 TCCCCGTAAATCTCGGTAAAAA 57.450 40.909 3.78 0.00 45.63 1.94
2014 8032 4.444536 CATCCCCGTAAATCTCGGTAAAA 58.555 43.478 3.78 0.00 45.63 1.52
2015 8033 3.742013 GCATCCCCGTAAATCTCGGTAAA 60.742 47.826 3.78 0.00 45.63 2.01
2016 8034 2.224113 GCATCCCCGTAAATCTCGGTAA 60.224 50.000 3.78 0.00 45.63 2.85
2017 8035 1.342174 GCATCCCCGTAAATCTCGGTA 59.658 52.381 3.78 0.00 45.63 4.02
2018 8036 0.106149 GCATCCCCGTAAATCTCGGT 59.894 55.000 3.78 0.00 45.63 4.69
2019 8037 0.393077 AGCATCCCCGTAAATCTCGG 59.607 55.000 0.00 0.00 46.49 4.63
2020 8038 1.068588 TCAGCATCCCCGTAAATCTCG 59.931 52.381 0.00 0.00 0.00 4.04
2021 8039 2.760374 CTCAGCATCCCCGTAAATCTC 58.240 52.381 0.00 0.00 0.00 2.75
2022 8040 1.202698 GCTCAGCATCCCCGTAAATCT 60.203 52.381 0.00 0.00 0.00 2.40
2023 8041 1.202698 AGCTCAGCATCCCCGTAAATC 60.203 52.381 0.00 0.00 0.00 2.17
2024 8042 0.839946 AGCTCAGCATCCCCGTAAAT 59.160 50.000 0.00 0.00 0.00 1.40
2025 8043 0.107703 CAGCTCAGCATCCCCGTAAA 60.108 55.000 0.00 0.00 0.00 2.01
2026 8044 1.522092 CAGCTCAGCATCCCCGTAA 59.478 57.895 0.00 0.00 0.00 3.18
2027 8045 2.434843 CCAGCTCAGCATCCCCGTA 61.435 63.158 0.00 0.00 0.00 4.02
2028 8046 3.790437 CCAGCTCAGCATCCCCGT 61.790 66.667 0.00 0.00 0.00 5.28
2029 8047 4.559063 CCCAGCTCAGCATCCCCG 62.559 72.222 0.00 0.00 0.00 5.73
2030 8048 1.130054 TATCCCAGCTCAGCATCCCC 61.130 60.000 0.00 0.00 0.00 4.81
2031 8049 0.767375 TTATCCCAGCTCAGCATCCC 59.233 55.000 0.00 0.00 0.00 3.85
2032 8050 2.875094 ATTATCCCAGCTCAGCATCC 57.125 50.000 0.00 0.00 0.00 3.51
2033 8051 4.139786 TCAAATTATCCCAGCTCAGCATC 58.860 43.478 0.00 0.00 0.00 3.91
2034 8052 4.174704 TCAAATTATCCCAGCTCAGCAT 57.825 40.909 0.00 0.00 0.00 3.79
2035 8053 3.650281 TCAAATTATCCCAGCTCAGCA 57.350 42.857 0.00 0.00 0.00 4.41
2036 8054 4.261909 CCAATCAAATTATCCCAGCTCAGC 60.262 45.833 0.00 0.00 0.00 4.26
2037 8055 5.135383 TCCAATCAAATTATCCCAGCTCAG 58.865 41.667 0.00 0.00 0.00 3.35
2038 8056 5.128033 TCCAATCAAATTATCCCAGCTCA 57.872 39.130 0.00 0.00 0.00 4.26
2039 8057 5.010415 CCTTCCAATCAAATTATCCCAGCTC 59.990 44.000 0.00 0.00 0.00 4.09
2040 8058 4.897670 CCTTCCAATCAAATTATCCCAGCT 59.102 41.667 0.00 0.00 0.00 4.24
2041 8059 4.895297 TCCTTCCAATCAAATTATCCCAGC 59.105 41.667 0.00 0.00 0.00 4.85
2042 8060 7.418254 CCTTTCCTTCCAATCAAATTATCCCAG 60.418 40.741 0.00 0.00 0.00 4.45
2043 8061 6.383726 CCTTTCCTTCCAATCAAATTATCCCA 59.616 38.462 0.00 0.00 0.00 4.37
2044 8062 6.183361 CCCTTTCCTTCCAATCAAATTATCCC 60.183 42.308 0.00 0.00 0.00 3.85
2045 8063 6.183361 CCCCTTTCCTTCCAATCAAATTATCC 60.183 42.308 0.00 0.00 0.00 2.59
2046 8064 6.611236 TCCCCTTTCCTTCCAATCAAATTATC 59.389 38.462 0.00 0.00 0.00 1.75
2047 8065 6.511208 TCCCCTTTCCTTCCAATCAAATTAT 58.489 36.000 0.00 0.00 0.00 1.28
2048 8066 5.909760 TCCCCTTTCCTTCCAATCAAATTA 58.090 37.500 0.00 0.00 0.00 1.40
2049 8067 4.762220 TCCCCTTTCCTTCCAATCAAATT 58.238 39.130 0.00 0.00 0.00 1.82
2050 8068 4.418395 TCCCCTTTCCTTCCAATCAAAT 57.582 40.909 0.00 0.00 0.00 2.32
2051 8069 3.913370 TCCCCTTTCCTTCCAATCAAA 57.087 42.857 0.00 0.00 0.00 2.69
2052 8070 3.336391 TCATCCCCTTTCCTTCCAATCAA 59.664 43.478 0.00 0.00 0.00 2.57
2053 8071 2.925653 TCATCCCCTTTCCTTCCAATCA 59.074 45.455 0.00 0.00 0.00 2.57
2054 8072 3.560105 CTCATCCCCTTTCCTTCCAATC 58.440 50.000 0.00 0.00 0.00 2.67
2055 8073 2.245806 CCTCATCCCCTTTCCTTCCAAT 59.754 50.000 0.00 0.00 0.00 3.16
2056 8074 1.640670 CCTCATCCCCTTTCCTTCCAA 59.359 52.381 0.00 0.00 0.00 3.53
2057 8075 1.298953 CCTCATCCCCTTTCCTTCCA 58.701 55.000 0.00 0.00 0.00 3.53
2058 8076 0.553333 CCCTCATCCCCTTTCCTTCC 59.447 60.000 0.00 0.00 0.00 3.46
2059 8077 0.553333 CCCCTCATCCCCTTTCCTTC 59.447 60.000 0.00 0.00 0.00 3.46
2060 8078 1.584717 GCCCCTCATCCCCTTTCCTT 61.585 60.000 0.00 0.00 0.00 3.36
2061 8079 2.009302 GCCCCTCATCCCCTTTCCT 61.009 63.158 0.00 0.00 0.00 3.36
2062 8080 2.603580 GCCCCTCATCCCCTTTCC 59.396 66.667 0.00 0.00 0.00 3.13
2063 8081 2.603580 GGCCCCTCATCCCCTTTC 59.396 66.667 0.00 0.00 0.00 2.62
2064 8082 3.029981 GGGCCCCTCATCCCCTTT 61.030 66.667 12.23 0.00 36.50 3.11
2065 8083 4.386100 TGGGCCCCTCATCCCCTT 62.386 66.667 22.27 0.00 41.92 3.95
2068 8086 4.129148 GTGTGGGCCCCTCATCCC 62.129 72.222 22.27 3.40 42.93 3.85
2069 8087 4.129148 GGTGTGGGCCCCTCATCC 62.129 72.222 22.27 17.15 29.60 3.51
2070 8088 4.129148 GGGTGTGGGCCCCTCATC 62.129 72.222 22.27 18.63 42.89 2.92
2077 8095 2.746947 ATTTTCAGGGGGTGTGGGCC 62.747 60.000 0.00 0.00 0.00 5.80
2078 8096 1.229177 ATTTTCAGGGGGTGTGGGC 60.229 57.895 0.00 0.00 0.00 5.36
2079 8097 0.114168 TGATTTTCAGGGGGTGTGGG 59.886 55.000 0.00 0.00 0.00 4.61
2080 8098 1.549203 CTGATTTTCAGGGGGTGTGG 58.451 55.000 0.00 0.00 40.71 4.17
2089 8107 1.000896 ACCGGCCCCTGATTTTCAG 60.001 57.895 0.00 0.00 43.91 3.02
2090 8108 1.304052 CACCGGCCCCTGATTTTCA 60.304 57.895 0.00 0.00 0.00 2.69
2091 8109 0.610785 TTCACCGGCCCCTGATTTTC 60.611 55.000 0.00 0.00 0.00 2.29
2092 8110 0.611896 CTTCACCGGCCCCTGATTTT 60.612 55.000 0.00 0.00 0.00 1.82
2093 8111 1.000896 CTTCACCGGCCCCTGATTT 60.001 57.895 0.00 0.00 0.00 2.17
2094 8112 1.281925 ATCTTCACCGGCCCCTGATT 61.282 55.000 0.00 0.00 0.00 2.57
2095 8113 1.281925 AATCTTCACCGGCCCCTGAT 61.282 55.000 0.00 0.00 0.00 2.90
2096 8114 1.497309 AAATCTTCACCGGCCCCTGA 61.497 55.000 0.00 0.00 0.00 3.86
2097 8115 1.000896 AAATCTTCACCGGCCCCTG 60.001 57.895 0.00 0.00 0.00 4.45
2098 8116 1.000896 CAAATCTTCACCGGCCCCT 60.001 57.895 0.00 0.00 0.00 4.79
2099 8117 0.898326 AACAAATCTTCACCGGCCCC 60.898 55.000 0.00 0.00 0.00 5.80
2100 8118 1.828979 TAACAAATCTTCACCGGCCC 58.171 50.000 0.00 0.00 0.00 5.80
2101 8119 2.413634 CGTTAACAAATCTTCACCGGCC 60.414 50.000 0.00 0.00 0.00 6.13
2102 8120 2.481185 TCGTTAACAAATCTTCACCGGC 59.519 45.455 0.00 0.00 0.00 6.13
2103 8121 4.449743 TCTTCGTTAACAAATCTTCACCGG 59.550 41.667 0.00 0.00 0.00 5.28
2104 8122 5.404366 TCTCTTCGTTAACAAATCTTCACCG 59.596 40.000 6.39 0.00 0.00 4.94
2105 8123 6.780706 TCTCTTCGTTAACAAATCTTCACC 57.219 37.500 6.39 0.00 0.00 4.02
2106 8124 7.742089 CACATCTCTTCGTTAACAAATCTTCAC 59.258 37.037 6.39 0.00 0.00 3.18
2107 8125 7.441157 ACACATCTCTTCGTTAACAAATCTTCA 59.559 33.333 6.39 0.00 0.00 3.02
2108 8126 7.797819 ACACATCTCTTCGTTAACAAATCTTC 58.202 34.615 6.39 0.00 0.00 2.87
2109 8127 7.730364 ACACATCTCTTCGTTAACAAATCTT 57.270 32.000 6.39 0.00 0.00 2.40
2110 8128 8.827177 TTACACATCTCTTCGTTAACAAATCT 57.173 30.769 6.39 0.00 0.00 2.40
2111 8129 9.872757 TTTTACACATCTCTTCGTTAACAAATC 57.127 29.630 6.39 0.00 0.00 2.17
2112 8130 9.659830 GTTTTACACATCTCTTCGTTAACAAAT 57.340 29.630 6.39 0.00 0.00 2.32
2113 8131 8.666573 TGTTTTACACATCTCTTCGTTAACAAA 58.333 29.630 6.39 0.00 0.00 2.83
2114 8132 8.199176 TGTTTTACACATCTCTTCGTTAACAA 57.801 30.769 6.39 0.00 0.00 2.83
2115 8133 7.773864 TGTTTTACACATCTCTTCGTTAACA 57.226 32.000 6.39 0.00 0.00 2.41
2129 8147 6.520401 ACGGAGTAATATGGGTGTTTTACACA 60.520 38.462 11.60 0.00 46.28 3.72
2130 8148 5.876460 ACGGAGTAATATGGGTGTTTTACAC 59.124 40.000 1.39 1.39 44.49 2.90
2131 8149 6.052405 ACGGAGTAATATGGGTGTTTTACA 57.948 37.500 0.00 0.00 41.94 2.41
2149 8167 5.105752 CCTGAAAATTCTAGACTGACGGAG 58.894 45.833 0.00 0.00 0.00 4.63
2150 8168 4.620803 GCCTGAAAATTCTAGACTGACGGA 60.621 45.833 0.00 0.00 0.00 4.69
2151 8169 3.619038 GCCTGAAAATTCTAGACTGACGG 59.381 47.826 0.00 0.00 0.00 4.79
2152 8170 3.304559 CGCCTGAAAATTCTAGACTGACG 59.695 47.826 0.00 0.00 0.00 4.35
2153 8171 4.246458 ACGCCTGAAAATTCTAGACTGAC 58.754 43.478 0.00 0.00 0.00 3.51
2154 8172 4.537135 ACGCCTGAAAATTCTAGACTGA 57.463 40.909 0.00 0.00 0.00 3.41
2155 8173 5.463724 GGATACGCCTGAAAATTCTAGACTG 59.536 44.000 0.00 0.00 0.00 3.51
2156 8174 5.602628 GGATACGCCTGAAAATTCTAGACT 58.397 41.667 0.00 0.00 0.00 3.24
2157 8175 5.908916 GGATACGCCTGAAAATTCTAGAC 57.091 43.478 0.00 0.00 0.00 2.59
2171 8189 0.105039 CTCAACCCAGAGGATACGCC 59.895 60.000 0.00 0.00 46.39 5.68
2172 8190 1.112113 TCTCAACCCAGAGGATACGC 58.888 55.000 0.00 0.00 46.39 4.42
2173 8191 3.384789 TCAATCTCAACCCAGAGGATACG 59.615 47.826 0.00 0.00 46.39 3.06
2174 8192 4.407296 ACTCAATCTCAACCCAGAGGATAC 59.593 45.833 0.00 0.00 36.30 2.24
2175 8193 4.406972 CACTCAATCTCAACCCAGAGGATA 59.593 45.833 0.00 0.00 36.30 2.59
2176 8194 3.199508 CACTCAATCTCAACCCAGAGGAT 59.800 47.826 0.00 0.00 36.30 3.24
2177 8195 2.568956 CACTCAATCTCAACCCAGAGGA 59.431 50.000 0.00 0.00 36.30 3.71
2178 8196 2.568956 TCACTCAATCTCAACCCAGAGG 59.431 50.000 0.00 0.00 36.30 3.69
2179 8197 3.594134 GTCACTCAATCTCAACCCAGAG 58.406 50.000 0.00 0.00 36.97 3.35
2183 8201 1.351017 TGGGTCACTCAATCTCAACCC 59.649 52.381 1.35 1.35 45.41 4.11
2186 8204 3.327464 TCACATGGGTCACTCAATCTCAA 59.673 43.478 0.00 0.00 0.00 3.02
2188 8206 3.616956 TCACATGGGTCACTCAATCTC 57.383 47.619 0.00 0.00 0.00 2.75
2209 8227 0.107066 ATCCAGCCGTGATTGCATGA 60.107 50.000 0.00 0.00 32.63 3.07
2223 8241 0.959553 ATAGCGTCCCGTACATCCAG 59.040 55.000 0.00 0.00 0.00 3.86
2253 8271 2.743928 CTCACTTGGCACGAGGGC 60.744 66.667 0.00 0.00 43.73 5.19
2263 8281 2.586425 TCAAAAGAAGGGCCTCACTTG 58.414 47.619 21.06 15.52 0.00 3.16
2266 8284 1.203287 GCATCAAAAGAAGGGCCTCAC 59.797 52.381 6.46 4.29 0.00 3.51
2272 8290 3.986996 AAATGGGCATCAAAAGAAGGG 57.013 42.857 0.00 0.00 0.00 3.95
2282 8300 1.278699 TCCAAAGGCAAAATGGGCATC 59.721 47.619 0.00 0.00 34.89 3.91
2294 8312 1.595093 CGGGTGTGGATTCCAAAGGC 61.595 60.000 7.05 0.00 34.18 4.35
2296 8314 0.037590 TCCGGGTGTGGATTCCAAAG 59.962 55.000 7.05 0.00 34.18 2.77
2310 8328 0.179056 ACACAAGTCAAGTGTCCGGG 60.179 55.000 0.00 0.00 46.57 5.73
2313 8331 1.599542 GCTCACACAAGTCAAGTGTCC 59.400 52.381 0.00 0.00 46.57 4.02
2318 8336 1.299541 AACCGCTCACACAAGTCAAG 58.700 50.000 0.00 0.00 0.00 3.02
2324 8342 1.013596 CAGTGAAACCGCTCACACAA 58.986 50.000 6.59 0.00 46.81 3.33
2328 8346 1.279840 GCACAGTGAAACCGCTCAC 59.720 57.895 4.15 0.00 45.10 3.51
2329 8347 2.243957 CGCACAGTGAAACCGCTCA 61.244 57.895 4.15 0.00 37.80 4.26
2330 8348 0.942410 TACGCACAGTGAAACCGCTC 60.942 55.000 4.15 0.00 37.80 5.03
2331 8349 0.944311 CTACGCACAGTGAAACCGCT 60.944 55.000 4.15 0.00 37.80 5.52
2332 8350 1.491563 CTACGCACAGTGAAACCGC 59.508 57.895 4.15 0.00 37.80 5.68
2334 8352 0.882927 TGGCTACGCACAGTGAAACC 60.883 55.000 4.15 0.00 37.80 3.27
2335 8353 0.234884 GTGGCTACGCACAGTGAAAC 59.765 55.000 4.15 0.00 0.00 2.78
2336 8354 0.179070 TGTGGCTACGCACAGTGAAA 60.179 50.000 4.15 0.00 30.87 2.69
2337 8355 0.034756 ATGTGGCTACGCACAGTGAA 59.965 50.000 4.15 0.00 40.41 3.18
2339 8357 1.361668 GGATGTGGCTACGCACAGTG 61.362 60.000 0.00 0.00 40.41 3.66
2341 8359 2.167219 CGGATGTGGCTACGCACAG 61.167 63.158 0.00 0.00 40.41 3.66
2342 8360 2.125713 CGGATGTGGCTACGCACA 60.126 61.111 0.00 0.00 40.41 4.57
2343 8361 2.890474 CCGGATGTGGCTACGCAC 60.890 66.667 0.00 0.00 40.41 5.34
2344 8362 1.605971 TAACCGGATGTGGCTACGCA 61.606 55.000 9.46 0.00 42.06 5.24
2347 8439 0.532196 GCCTAACCGGATGTGGCTAC 60.532 60.000 9.46 0.00 40.36 3.58
2358 8450 0.037734 AACCAAAGGAGGCCTAACCG 59.962 55.000 4.42 0.00 46.52 4.44
2363 8455 1.636003 CCTCTAAACCAAAGGAGGCCT 59.364 52.381 3.86 3.86 38.82 5.19
2364 8456 1.633945 TCCTCTAAACCAAAGGAGGCC 59.366 52.381 0.00 0.00 43.46 5.19
2365 8457 3.434940 TTCCTCTAAACCAAAGGAGGC 57.565 47.619 0.00 0.00 43.46 4.70
2366 8458 6.010219 TGAAATTCCTCTAAACCAAAGGAGG 58.990 40.000 0.00 0.00 44.69 4.30
2367 8459 7.709149 ATGAAATTCCTCTAAACCAAAGGAG 57.291 36.000 0.00 0.00 40.21 3.69
2369 8461 7.834181 TCCTATGAAATTCCTCTAAACCAAAGG 59.166 37.037 0.00 0.00 0.00 3.11
2370 8462 8.807948 TCCTATGAAATTCCTCTAAACCAAAG 57.192 34.615 0.00 0.00 0.00 2.77
2371 8463 9.768215 ATTCCTATGAAATTCCTCTAAACCAAA 57.232 29.630 0.00 0.00 33.32 3.28
2373 8465 9.768215 AAATTCCTATGAAATTCCTCTAAACCA 57.232 29.630 0.00 0.00 33.32 3.67
2380 8472 9.853177 TCCTCTAAAATTCCTATGAAATTCCTC 57.147 33.333 0.00 0.00 33.32 3.71
2424 10596 4.552674 ACCAAAGGGCTCTAAAGGAAAAA 58.447 39.130 5.94 0.00 37.90 1.94
2425 10597 4.193240 ACCAAAGGGCTCTAAAGGAAAA 57.807 40.909 5.94 0.00 37.90 2.29
2426 10598 3.895704 ACCAAAGGGCTCTAAAGGAAA 57.104 42.857 5.94 0.00 37.90 3.13
2427 10599 3.139397 TGAACCAAAGGGCTCTAAAGGAA 59.861 43.478 5.94 0.00 37.90 3.36
2428 10600 2.714250 TGAACCAAAGGGCTCTAAAGGA 59.286 45.455 5.94 0.00 37.90 3.36
2429 10601 3.154827 TGAACCAAAGGGCTCTAAAGG 57.845 47.619 0.00 0.00 37.90 3.11
2430 10602 4.884164 CCTATGAACCAAAGGGCTCTAAAG 59.116 45.833 0.00 0.00 37.90 1.85
2431 10603 4.538490 TCCTATGAACCAAAGGGCTCTAAA 59.462 41.667 0.00 0.00 37.90 1.85
2432 10604 4.108570 TCCTATGAACCAAAGGGCTCTAA 58.891 43.478 0.00 0.00 37.90 2.10
2433 10605 3.731431 TCCTATGAACCAAAGGGCTCTA 58.269 45.455 0.00 0.00 37.90 2.43
2434 10606 2.562296 TCCTATGAACCAAAGGGCTCT 58.438 47.619 0.00 0.00 37.90 4.09
2435 10607 3.366052 TTCCTATGAACCAAAGGGCTC 57.634 47.619 0.00 0.00 37.90 4.70
2436 10608 3.628257 CCATTCCTATGAACCAAAGGGCT 60.628 47.826 0.00 0.00 33.50 5.19
2437 10609 2.695147 CCATTCCTATGAACCAAAGGGC 59.305 50.000 0.00 0.00 33.50 5.19
2438 10610 4.249638 TCCATTCCTATGAACCAAAGGG 57.750 45.455 0.00 0.00 35.37 3.95
2439 10611 6.396829 GAATCCATTCCTATGAACCAAAGG 57.603 41.667 0.00 0.00 33.37 3.11
2468 10640 6.301169 GGATAGTAACCAATCCTATGGAGG 57.699 45.833 0.00 0.00 43.54 4.30
2476 10648 5.568620 ATGTGGAGGATAGTAACCAATCC 57.431 43.478 0.00 0.00 41.77 3.01
2477 10649 7.054124 TGAAATGTGGAGGATAGTAACCAATC 58.946 38.462 0.00 0.00 34.11 2.67
2478 10650 6.969043 TGAAATGTGGAGGATAGTAACCAAT 58.031 36.000 0.00 0.00 34.11 3.16
2479 10651 6.381498 TGAAATGTGGAGGATAGTAACCAA 57.619 37.500 0.00 0.00 34.11 3.67
2480 10652 6.575244 ATGAAATGTGGAGGATAGTAACCA 57.425 37.500 0.00 0.00 0.00 3.67
2481 10653 7.016268 TCCTATGAAATGTGGAGGATAGTAACC 59.984 40.741 0.00 0.00 31.25 2.85
2482 10654 7.963532 TCCTATGAAATGTGGAGGATAGTAAC 58.036 38.462 0.00 0.00 31.25 2.50
2483 10655 8.561536 TTCCTATGAAATGTGGAGGATAGTAA 57.438 34.615 0.00 0.00 36.22 2.24
2484 10656 8.561536 TTTCCTATGAAATGTGGAGGATAGTA 57.438 34.615 0.00 0.00 36.22 1.82
2485 10657 7.451731 TTTCCTATGAAATGTGGAGGATAGT 57.548 36.000 0.00 0.00 36.22 2.12
2486 10658 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08
2488 10660 9.713684 TTTATTTTCCTATGAAATGTGGAGGAT 57.286 29.630 0.00 0.00 40.08 3.24
2489 10661 9.540538 TTTTATTTTCCTATGAAATGTGGAGGA 57.459 29.630 0.00 0.00 40.08 3.71
2538 10710 7.442062 GTCATTTGGTTGACATCAAAGGAATTT 59.558 33.333 15.68 0.00 42.54 1.82
2540 10712 6.458210 GTCATTTGGTTGACATCAAAGGAAT 58.542 36.000 15.68 0.00 42.54 3.01
2541 10713 5.841810 GTCATTTGGTTGACATCAAAGGAA 58.158 37.500 15.68 4.09 42.54 3.36
2554 10726 7.781324 ATAGGAAACAAGATGTCATTTGGTT 57.219 32.000 9.41 9.41 36.95 3.67
2557 10729 8.059798 AGGAATAGGAAACAAGATGTCATTTG 57.940 34.615 0.00 0.00 0.00 2.32
2558 10730 9.178758 GTAGGAATAGGAAACAAGATGTCATTT 57.821 33.333 0.00 0.00 0.00 2.32
2559 10731 8.552296 AGTAGGAATAGGAAACAAGATGTCATT 58.448 33.333 0.00 0.00 0.00 2.57
2560 10732 8.095452 AGTAGGAATAGGAAACAAGATGTCAT 57.905 34.615 0.00 0.00 0.00 3.06
2562 10734 7.556844 TGAGTAGGAATAGGAAACAAGATGTC 58.443 38.462 0.00 0.00 0.00 3.06
2564 10736 9.703892 CTATGAGTAGGAATAGGAAACAAGATG 57.296 37.037 0.00 0.00 0.00 2.90
2565 10737 9.661954 TCTATGAGTAGGAATAGGAAACAAGAT 57.338 33.333 0.00 0.00 0.00 2.40
2566 10738 9.488762 TTCTATGAGTAGGAATAGGAAACAAGA 57.511 33.333 0.00 0.00 0.00 3.02
2573 10745 9.883293 TCTCAAATTCTATGAGTAGGAATAGGA 57.117 33.333 5.71 0.00 43.77 2.94
2596 10768 9.755804 TGTAGAAAATGAGATGACATGTATCTC 57.244 33.333 24.04 24.04 46.82 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.