Multiple sequence alignment - TraesCS3A01G299500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G299500 chr3A 100.000 6340 0 0 1 6340 533657326 533663665 0.000000e+00 11708.0
1 TraesCS3A01G299500 chr3A 85.546 595 70 9 3582 4163 743897202 743896611 5.440000e-170 608.0
2 TraesCS3A01G299500 chr3A 89.619 289 28 2 3878 4166 10028154 10027868 3.610000e-97 366.0
3 TraesCS3A01G299500 chr3B 91.717 3332 166 45 2704 5978 543469561 543466283 0.000000e+00 4523.0
4 TraesCS3A01G299500 chr3B 88.612 2248 130 52 61 2253 543472012 543469836 0.000000e+00 2617.0
5 TraesCS3A01G299500 chr3B 92.115 279 12 6 6069 6340 543466277 543466002 9.970000e-103 385.0
6 TraesCS3A01G299500 chr3B 93.607 219 6 4 2301 2513 543469839 543469623 2.850000e-83 320.0
7 TraesCS3A01G299500 chr3B 85.200 250 34 2 3522 3769 59965639 59965391 2.930000e-63 254.0
8 TraesCS3A01G299500 chr3D 88.982 3821 199 84 308 4017 417164844 417161135 0.000000e+00 4519.0
9 TraesCS3A01G299500 chr3D 87.474 2363 145 69 4071 6340 417161135 417158831 0.000000e+00 2584.0
10 TraesCS3A01G299500 chr3D 86.894 908 89 8 3285 4163 535744406 535745312 0.000000e+00 990.0
11 TraesCS3A01G299500 chr3D 84.412 340 21 12 1 324 417167360 417167037 7.990000e-79 305.0
12 TraesCS3A01G299500 chr3D 82.178 202 24 11 482 676 346308868 346309064 5.090000e-36 163.0
13 TraesCS3A01G299500 chr3D 81.731 104 17 2 1785 1887 3825057 3824955 1.130000e-12 86.1
14 TraesCS3A01G299500 chr3D 94.444 54 3 0 4758 4811 535745339 535745392 4.070000e-12 84.2
15 TraesCS3A01G299500 chr2A 88.660 1455 116 25 2293 3709 621870099 621868656 0.000000e+00 1727.0
16 TraesCS3A01G299500 chr2A 87.559 852 74 13 3728 4553 621860883 621860038 0.000000e+00 957.0
17 TraesCS3A01G299500 chr2A 83.249 197 23 8 482 673 613321790 613321599 8.450000e-39 172.0
18 TraesCS3A01G299500 chr4D 87.808 894 86 9 3285 4158 19302941 19303831 0.000000e+00 1026.0
19 TraesCS3A01G299500 chr4A 86.233 908 94 11 3285 4163 741259146 741258241 0.000000e+00 955.0
20 TraesCS3A01G299500 chr4A 85.746 905 105 11 3285 4166 738580398 738579495 0.000000e+00 935.0
21 TraesCS3A01G299500 chr4A 94.828 58 3 0 4757 4814 741258215 741258158 2.430000e-14 91.6
22 TraesCS3A01G299500 chrUn 85.987 892 94 13 3301 4163 221213140 221214029 0.000000e+00 926.0
23 TraesCS3A01G299500 chrUn 83.163 196 24 6 482 673 83300047 83299857 3.040000e-38 171.0
24 TraesCS3A01G299500 chrUn 96.364 55 2 0 4757 4811 221214055 221214109 2.430000e-14 91.6
25 TraesCS3A01G299500 chrUn 81.720 93 16 1 1785 1877 31931089 31931180 6.820000e-10 76.8
26 TraesCS3A01G299500 chr7A 85.142 599 72 8 3582 4166 543306684 543306089 1.180000e-166 597.0
27 TraesCS3A01G299500 chr7A 85.321 545 63 7 3582 4112 690713156 690713697 1.200000e-151 547.0
28 TraesCS3A01G299500 chr7A 83.249 197 23 9 482 673 176272000 176271809 8.450000e-39 172.0
29 TraesCS3A01G299500 chr7A 87.778 90 11 0 5970 6059 714673767 714673856 8.690000e-19 106.0
30 TraesCS3A01G299500 chr7A 89.286 84 7 2 5983 6066 628840084 628840003 3.130000e-18 104.0
31 TraesCS3A01G299500 chr7A 85.000 100 14 1 5971 6069 181833203 181833302 4.040000e-17 100.0
32 TraesCS3A01G299500 chr5D 83.906 640 61 15 1228 1867 46121080 46120483 1.980000e-159 573.0
33 TraesCS3A01G299500 chr5D 83.380 361 60 0 4387 4747 478163956 478163596 1.020000e-87 335.0
34 TraesCS3A01G299500 chr5D 77.132 258 22 13 1823 2078 196874970 196875192 1.440000e-21 115.0
35 TraesCS3A01G299500 chr5D 90.361 83 8 0 5977 6059 159649180 159649262 6.720000e-20 110.0
36 TraesCS3A01G299500 chr1D 81.061 660 113 11 4382 5032 424730664 424731320 3.390000e-142 516.0
37 TraesCS3A01G299500 chr1D 82.812 320 55 0 2809 3128 424729322 424729641 2.890000e-73 287.0
38 TraesCS3A01G299500 chr1D 86.294 197 23 3 1693 1887 424728483 424728677 1.790000e-50 211.0
39 TraesCS3A01G299500 chr1D 85.057 174 25 1 1360 1533 424728141 424728313 6.530000e-40 176.0
40 TraesCS3A01G299500 chr1A 81.202 649 112 10 4384 5024 520573062 520573708 1.220000e-141 514.0
41 TraesCS3A01G299500 chr1A 86.802 197 22 3 1693 1887 520570759 520570953 3.850000e-52 217.0
42 TraesCS3A01G299500 chr1A 80.132 302 41 9 1389 1690 297845701 297845983 2.320000e-49 207.0
43 TraesCS3A01G299500 chr1A 81.439 264 33 9 1285 1533 520570327 520570589 1.080000e-47 202.0
44 TraesCS3A01G299500 chr2D 88.438 320 33 4 3849 4166 152014932 152014615 3.590000e-102 383.0
45 TraesCS3A01G299500 chr2D 88.506 87 10 0 5982 6068 608374144 608374230 8.690000e-19 106.0
46 TraesCS3A01G299500 chr5A 77.626 657 127 15 4387 5024 597290132 597289477 1.290000e-101 381.0
47 TraesCS3A01G299500 chr5A 77.108 498 75 29 1367 1852 597292258 597291788 1.060000e-62 252.0
48 TraesCS3A01G299500 chr5A 91.200 125 8 3 1741 1862 37195272 37195148 3.930000e-37 167.0
49 TraesCS3A01G299500 chr5A 92.771 83 6 0 5980 6062 245964802 245964720 3.100000e-23 121.0
50 TraesCS3A01G299500 chr1B 90.311 289 26 2 3875 4163 681771878 681772164 1.670000e-100 377.0
51 TraesCS3A01G299500 chr1B 87.817 197 20 3 1693 1887 573859140 573859334 1.780000e-55 228.0
52 TraesCS3A01G299500 chr1B 87.574 169 21 0 1360 1528 573858798 573858966 5.010000e-46 196.0
53 TraesCS3A01G299500 chr1B 86.316 95 13 0 5968 6062 364125426 364125332 3.130000e-18 104.0
54 TraesCS3A01G299500 chr5B 83.934 361 58 0 4387 4747 585752600 585752240 4.710000e-91 346.0
55 TraesCS3A01G299500 chr5B 76.236 526 85 31 1339 1852 585754751 585754254 6.350000e-60 243.0
56 TraesCS3A01G299500 chr5B 91.250 80 7 0 5983 6062 176235068 176234989 6.720000e-20 110.0
57 TraesCS3A01G299500 chr7B 93.194 191 12 1 3299 3488 161224081 161224271 4.840000e-71 279.0
58 TraesCS3A01G299500 chr7B 85.830 247 32 2 3522 3766 161224269 161224514 6.310000e-65 259.0
59 TraesCS3A01G299500 chr7D 84.103 195 23 7 483 673 265002365 265002555 1.400000e-41 182.0
60 TraesCS3A01G299500 chr6B 83.163 196 25 5 482 673 696012341 696012532 8.450000e-39 172.0
61 TraesCS3A01G299500 chr4B 83.000 200 25 6 482 676 551080523 551080328 8.450000e-39 172.0
62 TraesCS3A01G299500 chr6A 89.655 87 8 1 5974 6059 428782 428696 6.720000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G299500 chr3A 533657326 533663665 6339 False 11708.000000 11708 100.000000 1 6340 1 chr3A.!!$F1 6339
1 TraesCS3A01G299500 chr3A 743896611 743897202 591 True 608.000000 608 85.546000 3582 4163 1 chr3A.!!$R2 581
2 TraesCS3A01G299500 chr3B 543466002 543472012 6010 True 1961.250000 4523 91.512750 61 6340 4 chr3B.!!$R2 6279
3 TraesCS3A01G299500 chr3D 417158831 417167360 8529 True 2469.333333 4519 86.956000 1 6340 3 chr3D.!!$R2 6339
4 TraesCS3A01G299500 chr3D 535744406 535745392 986 False 537.100000 990 90.669000 3285 4811 2 chr3D.!!$F2 1526
5 TraesCS3A01G299500 chr2A 621868656 621870099 1443 True 1727.000000 1727 88.660000 2293 3709 1 chr2A.!!$R3 1416
6 TraesCS3A01G299500 chr2A 621860038 621860883 845 True 957.000000 957 87.559000 3728 4553 1 chr2A.!!$R2 825
7 TraesCS3A01G299500 chr4D 19302941 19303831 890 False 1026.000000 1026 87.808000 3285 4158 1 chr4D.!!$F1 873
8 TraesCS3A01G299500 chr4A 738579495 738580398 903 True 935.000000 935 85.746000 3285 4166 1 chr4A.!!$R1 881
9 TraesCS3A01G299500 chr4A 741258158 741259146 988 True 523.300000 955 90.530500 3285 4814 2 chr4A.!!$R2 1529
10 TraesCS3A01G299500 chrUn 221213140 221214109 969 False 508.800000 926 91.175500 3301 4811 2 chrUn.!!$F2 1510
11 TraesCS3A01G299500 chr7A 543306089 543306684 595 True 597.000000 597 85.142000 3582 4166 1 chr7A.!!$R2 584
12 TraesCS3A01G299500 chr7A 690713156 690713697 541 False 547.000000 547 85.321000 3582 4112 1 chr7A.!!$F2 530
13 TraesCS3A01G299500 chr5D 46120483 46121080 597 True 573.000000 573 83.906000 1228 1867 1 chr5D.!!$R1 639
14 TraesCS3A01G299500 chr1D 424728141 424731320 3179 False 297.500000 516 83.806000 1360 5032 4 chr1D.!!$F1 3672
15 TraesCS3A01G299500 chr1A 520570327 520573708 3381 False 311.000000 514 83.147667 1285 5024 3 chr1A.!!$F2 3739
16 TraesCS3A01G299500 chr5A 597289477 597292258 2781 True 316.500000 381 77.367000 1367 5024 2 chr5A.!!$R3 3657
17 TraesCS3A01G299500 chr1B 573858798 573859334 536 False 212.000000 228 87.695500 1360 1887 2 chr1B.!!$F2 527
18 TraesCS3A01G299500 chr5B 585752240 585754751 2511 True 294.500000 346 80.085000 1339 4747 2 chr5B.!!$R2 3408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
339 2568 0.109132 CCGCTGCTTTCCAATCCAAC 60.109 55.000 0.0 0.0 0.00 3.77 F
1104 3398 0.038159 CTCTTCTTCCGTCTTGGCGT 60.038 55.000 0.0 0.0 37.80 5.68 F
1105 3399 0.038526 TCTTCTTCCGTCTTGGCGTC 60.039 55.000 0.0 0.0 37.80 5.19 F
1138 3432 0.106268 CTCCAGCCTAGCCTCAGAGA 60.106 60.000 0.0 0.0 0.00 3.10 F
2611 5004 0.326595 TCAAATGAGGGTGCCGCTTA 59.673 50.000 0.0 0.0 0.00 3.09 F
2615 5008 0.546122 ATGAGGGTGCCGCTTATTCA 59.454 50.000 0.0 0.0 0.00 2.57 F
2616 5009 0.326595 TGAGGGTGCCGCTTATTCAA 59.673 50.000 0.0 0.0 0.00 2.69 F
2617 5010 1.064758 TGAGGGTGCCGCTTATTCAAT 60.065 47.619 0.0 0.0 0.00 2.57 F
3965 6963 1.339151 CCCAGGAAGCACAAGTAGGAC 60.339 57.143 0.0 0.0 0.00 3.85 F
4975 8364 1.133809 TCCTTCTGTTCCAGGGGGTG 61.134 60.000 0.0 0.0 34.93 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2289 4649 0.394565 AGCAACACTCCAGTCCAGTC 59.605 55.000 0.00 0.0 0.00 3.51 R
2442 4821 0.108585 CCCACATACTCCATTCCGGG 59.891 60.000 0.00 0.0 34.36 5.73 R
2596 4989 0.546122 TGAATAAGCGGCACCCTCAT 59.454 50.000 1.45 0.0 0.00 2.90 R
2700 5093 6.719370 AGTATTGTTCAAAATGAAGCCTACCA 59.281 34.615 0.00 0.0 37.00 3.25 R
3827 6822 1.318576 AACCGCAAGAAAGGGACAAG 58.681 50.000 0.00 0.0 43.02 3.16 R
4274 7620 1.718711 CAAAACGGATTCGCGCATTTT 59.281 42.857 8.75 0.0 40.63 1.82 R
4299 7646 4.256920 GTGCTCATCAGGTGTAAGAATGT 58.743 43.478 0.00 0.0 0.00 2.71 R
4340 7695 6.273495 TCAGTGGTACATAAATATATGGGGCA 59.727 38.462 0.00 0.0 44.52 5.36 R
5131 8521 0.179702 TGATCATCAGCCAGAGCCAC 59.820 55.000 0.00 0.0 41.25 5.01 R
6139 9633 0.249114 GCTAGCTAGACAAGGCCGTC 60.249 60.000 25.15 0.0 36.08 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.712510 GGATGAATGGATGGATGGGGA 59.287 52.381 0.00 0.00 0.00 4.81
25 26 1.379776 ATGGATGGATGGGGATGGAG 58.620 55.000 0.00 0.00 0.00 3.86
26 27 0.271619 TGGATGGATGGGGATGGAGA 59.728 55.000 0.00 0.00 0.00 3.71
27 28 0.695347 GGATGGATGGGGATGGAGAC 59.305 60.000 0.00 0.00 0.00 3.36
28 29 0.322975 GATGGATGGGGATGGAGACG 59.677 60.000 0.00 0.00 0.00 4.18
29 30 1.130054 ATGGATGGGGATGGAGACGG 61.130 60.000 0.00 0.00 0.00 4.79
30 31 2.427753 GATGGGGATGGAGACGGC 59.572 66.667 0.00 0.00 0.00 5.68
31 32 3.171388 ATGGGGATGGAGACGGCC 61.171 66.667 0.00 0.00 0.00 6.13
35 36 4.222847 GGATGGAGACGGCCGGAC 62.223 72.222 31.76 22.49 0.00 4.79
36 37 4.570663 GATGGAGACGGCCGGACG 62.571 72.222 32.33 32.33 40.31 4.79
138 149 4.980805 TGTCCCGTTGCACTCGCC 62.981 66.667 5.14 0.00 37.32 5.54
198 209 4.832248 CTCTTGTCAAGTTACCCATGCTA 58.168 43.478 12.30 0.00 0.00 3.49
199 210 4.832248 TCTTGTCAAGTTACCCATGCTAG 58.168 43.478 12.30 0.00 0.00 3.42
201 212 5.482526 TCTTGTCAAGTTACCCATGCTAGTA 59.517 40.000 12.30 0.00 0.00 1.82
202 213 5.339008 TGTCAAGTTACCCATGCTAGTAG 57.661 43.478 0.00 0.00 0.00 2.57
205 216 6.096423 TGTCAAGTTACCCATGCTAGTAGTAG 59.904 42.308 0.00 0.00 0.00 2.57
208 219 7.284034 TCAAGTTACCCATGCTAGTAGTAGTAC 59.716 40.741 6.47 0.00 0.00 2.73
209 220 6.909076 AGTTACCCATGCTAGTAGTAGTACT 58.091 40.000 14.57 14.57 42.49 2.73
210 221 6.997476 AGTTACCCATGCTAGTAGTAGTACTC 59.003 42.308 13.60 1.81 40.23 2.59
211 222 5.649970 ACCCATGCTAGTAGTAGTACTCT 57.350 43.478 13.60 6.77 40.23 3.24
227 244 8.842280 AGTAGTACTCTTATGCTAATGAGACAC 58.158 37.037 0.00 6.21 0.00 3.67
228 245 7.646548 AGTACTCTTATGCTAATGAGACACA 57.353 36.000 0.00 0.00 0.00 3.72
229 246 7.711846 AGTACTCTTATGCTAATGAGACACAG 58.288 38.462 0.00 0.00 0.00 3.66
230 247 6.782082 ACTCTTATGCTAATGAGACACAGA 57.218 37.500 8.19 0.00 0.00 3.41
233 250 6.333416 TCTTATGCTAATGAGACACAGACAC 58.667 40.000 0.00 0.00 0.00 3.67
239 257 1.167781 TGAGACACAGACACGCGGTA 61.168 55.000 12.47 0.00 0.00 4.02
278 296 1.729881 GCCATTTGCAGATCCCGAC 59.270 57.895 0.00 0.00 40.77 4.79
285 303 1.248101 TGCAGATCCCGACGACAAGA 61.248 55.000 0.00 0.00 0.00 3.02
292 310 0.320421 CCCGACGACAAGAACACCAT 60.320 55.000 0.00 0.00 0.00 3.55
310 328 4.153475 CACCATGGTTTCCACGTTAACTAG 59.847 45.833 16.84 0.00 35.80 2.57
334 2563 3.443045 CCGCCGCTGCTTTCCAAT 61.443 61.111 0.00 0.00 34.43 3.16
336 2565 2.491621 GCCGCTGCTTTCCAATCC 59.508 61.111 0.00 0.00 33.53 3.01
339 2568 0.109132 CCGCTGCTTTCCAATCCAAC 60.109 55.000 0.00 0.00 0.00 3.77
392 2621 4.962751 CAGTAGTACGTTAATCGAGCTGAC 59.037 45.833 0.00 0.00 42.86 3.51
400 2629 2.558554 AATCGAGCTGACGAACGGGG 62.559 60.000 1.28 0.00 45.16 5.73
443 2672 0.462403 AGCTACTCTCTCCGTCCGTC 60.462 60.000 0.00 0.00 0.00 4.79
444 2673 1.438562 GCTACTCTCTCCGTCCGTCC 61.439 65.000 0.00 0.00 0.00 4.79
445 2674 1.152989 CTACTCTCTCCGTCCGTCCG 61.153 65.000 0.00 0.00 0.00 4.79
446 2675 3.878519 CTCTCTCCGTCCGTCCGC 61.879 72.222 0.00 0.00 0.00 5.54
464 2693 2.794910 CCGCGGAATAAGTGTACATCTG 59.205 50.000 24.07 0.00 0.00 2.90
472 2701 7.196331 GGAATAAGTGTACATCTGGATTTTGC 58.804 38.462 0.00 0.00 0.00 3.68
474 2703 3.009723 AGTGTACATCTGGATTTTGCCG 58.990 45.455 0.00 0.00 0.00 5.69
475 2704 1.742831 TGTACATCTGGATTTTGCCGC 59.257 47.619 0.00 0.00 0.00 6.53
477 2706 0.813184 ACATCTGGATTTTGCCGCAG 59.187 50.000 0.00 0.00 0.00 5.18
478 2707 0.813184 CATCTGGATTTTGCCGCAGT 59.187 50.000 0.00 0.00 0.00 4.40
554 2803 9.774742 ATTAGATTCGCTTTGAAATGTACTTTC 57.225 29.630 9.52 9.52 43.05 2.62
583 2832 8.763049 ATATATCAAGTTGACGTCACATATGG 57.237 34.615 19.90 6.28 0.00 2.74
588 2837 5.142061 AGTTGACGTCACATATGGTTACA 57.858 39.130 19.90 0.00 0.00 2.41
594 2843 6.146510 TGACGTCACATATGGTTACACTTTTC 59.853 38.462 15.76 0.00 0.00 2.29
706 2965 0.256464 CCGTCCTCCACTCCTACTCT 59.744 60.000 0.00 0.00 0.00 3.24
726 2994 1.194781 GGTCTCCAGCTGGAACCAGA 61.195 60.000 36.75 28.70 46.30 3.86
738 3006 1.478654 GGAACCAGAGGCCAAAGTGAA 60.479 52.381 5.01 0.00 0.00 3.18
739 3007 1.882623 GAACCAGAGGCCAAAGTGAAG 59.117 52.381 5.01 0.00 0.00 3.02
740 3008 0.538287 ACCAGAGGCCAAAGTGAAGC 60.538 55.000 5.01 0.00 0.00 3.86
744 3012 4.500265 GGCCAAAGTGAAGCCAGA 57.500 55.556 0.00 0.00 46.34 3.86
745 3013 2.261215 GGCCAAAGTGAAGCCAGAG 58.739 57.895 0.00 0.00 46.34 3.35
746 3014 1.246737 GGCCAAAGTGAAGCCAGAGG 61.247 60.000 0.00 0.00 46.34 3.69
747 3015 0.250901 GCCAAAGTGAAGCCAGAGGA 60.251 55.000 0.00 0.00 0.00 3.71
828 3101 2.043992 CGGTGTGGTAATCATAGGGGA 58.956 52.381 0.00 0.00 0.00 4.81
829 3102 2.037251 CGGTGTGGTAATCATAGGGGAG 59.963 54.545 0.00 0.00 0.00 4.30
830 3103 3.314693 GGTGTGGTAATCATAGGGGAGA 58.685 50.000 0.00 0.00 0.00 3.71
831 3104 3.325135 GGTGTGGTAATCATAGGGGAGAG 59.675 52.174 0.00 0.00 0.00 3.20
832 3105 3.967987 GTGTGGTAATCATAGGGGAGAGT 59.032 47.826 0.00 0.00 0.00 3.24
920 3203 4.111016 CCGCGACGTGGTGAGCTA 62.111 66.667 19.36 0.00 0.00 3.32
923 3206 1.514443 GCGACGTGGTGAGCTACTC 60.514 63.158 0.00 0.00 0.00 2.59
924 3207 1.873863 CGACGTGGTGAGCTACTCA 59.126 57.895 0.00 0.00 38.25 3.41
944 3227 0.322975 GAGCTGAGCTGTTTCCTCCA 59.677 55.000 13.71 0.00 39.88 3.86
973 3266 3.005539 TCACTCCTCCCTGCTGCC 61.006 66.667 0.00 0.00 0.00 4.85
1028 3321 2.827642 GTGGGATCCTGCTGCTGC 60.828 66.667 12.58 8.89 40.20 5.25
1033 3326 4.816984 ATCCTGCTGCTGCCTGCC 62.817 66.667 13.47 0.00 42.00 4.85
1077 3370 1.995542 TCCTCCTGCCATTTCCTTCTT 59.004 47.619 0.00 0.00 0.00 2.52
1093 3387 3.055458 CCTTCTTCCCCTGTCTCTTCTTC 60.055 52.174 0.00 0.00 0.00 2.87
1102 3396 1.000955 TGTCTCTTCTTCCGTCTTGGC 59.999 52.381 0.00 0.00 37.80 4.52
1103 3397 0.243907 TCTCTTCTTCCGTCTTGGCG 59.756 55.000 0.00 0.00 37.80 5.69
1104 3398 0.038159 CTCTTCTTCCGTCTTGGCGT 60.038 55.000 0.00 0.00 37.80 5.68
1105 3399 0.038526 TCTTCTTCCGTCTTGGCGTC 60.039 55.000 0.00 0.00 37.80 5.19
1136 3430 1.760086 GCTCCAGCCTAGCCTCAGA 60.760 63.158 0.00 0.00 33.73 3.27
1138 3432 0.106268 CTCCAGCCTAGCCTCAGAGA 60.106 60.000 0.00 0.00 0.00 3.10
1143 3437 0.459489 GCCTAGCCTCAGAGAGTGTG 59.541 60.000 0.00 0.00 0.00 3.82
1144 3438 1.846007 CCTAGCCTCAGAGAGTGTGT 58.154 55.000 0.00 0.00 0.00 3.72
2005 4365 1.819288 CAACGAGAAGGAGGTGAGCTA 59.181 52.381 0.00 0.00 0.00 3.32
2135 4495 3.803082 CGCATTGGTGGTCGCAGG 61.803 66.667 0.00 0.00 0.00 4.85
2239 4599 6.332635 TGGATAGTTGAGATTGGGTTATCCAT 59.667 38.462 6.29 0.00 46.52 3.41
2240 4600 6.881602 GGATAGTTGAGATTGGGTTATCCATC 59.118 42.308 0.00 0.00 46.52 3.51
2243 4603 6.125029 AGTTGAGATTGGGTTATCCATCTTG 58.875 40.000 0.00 0.00 46.52 3.02
2245 4605 3.823304 GAGATTGGGTTATCCATCTTGGC 59.177 47.826 0.00 0.00 46.52 4.52
2288 4648 0.334676 TTGGCCCCTATCACTTTGGG 59.665 55.000 0.00 0.00 41.23 4.12
2381 4748 3.688694 AGTTGGTTAACGTGATGGCTA 57.311 42.857 0.00 0.00 41.71 3.93
2382 4749 3.332034 AGTTGGTTAACGTGATGGCTAC 58.668 45.455 0.00 0.00 41.71 3.58
2383 4750 3.007614 AGTTGGTTAACGTGATGGCTACT 59.992 43.478 0.00 0.00 41.71 2.57
2442 4821 5.613358 ACTGTTTGGTTGAAGATTCGATC 57.387 39.130 0.00 0.00 0.00 3.69
2457 4836 1.893137 TCGATCCCGGAATGGAGTATG 59.107 52.381 0.73 0.00 42.00 2.39
2495 4874 1.734420 TTTTGGGGATGGGGTGCTCA 61.734 55.000 0.00 0.00 0.00 4.26
2533 4912 5.371526 CACATCCCAGTTATGCTTGTCTAT 58.628 41.667 0.00 0.00 0.00 1.98
2534 4913 5.468072 CACATCCCAGTTATGCTTGTCTATC 59.532 44.000 0.00 0.00 0.00 2.08
2538 4917 6.721318 TCCCAGTTATGCTTGTCTATCTTTT 58.279 36.000 0.00 0.00 0.00 2.27
2540 4919 6.038714 CCCAGTTATGCTTGTCTATCTTTTCC 59.961 42.308 0.00 0.00 0.00 3.13
2542 4921 7.284034 CCAGTTATGCTTGTCTATCTTTTCCAT 59.716 37.037 0.00 0.00 0.00 3.41
2543 4922 8.341173 CAGTTATGCTTGTCTATCTTTTCCATC 58.659 37.037 0.00 0.00 0.00 3.51
2564 4953 2.159707 CCCAAGACACATTTTAGACGCG 60.160 50.000 3.53 3.53 0.00 6.01
2569 4958 0.521242 CACATTTTAGACGCGGCTGC 60.521 55.000 28.40 7.70 37.91 5.25
2594 4987 4.587584 TTCAATTCATTTGCTGCTGTCA 57.412 36.364 0.00 0.00 35.16 3.58
2596 4989 4.946445 TCAATTCATTTGCTGCTGTCAAA 58.054 34.783 12.76 12.76 37.75 2.69
2605 4998 0.524862 CTGCTGTCAAATGAGGGTGC 59.475 55.000 0.00 0.00 0.00 5.01
2610 5003 1.074775 TCAAATGAGGGTGCCGCTT 59.925 52.632 0.00 0.00 0.00 4.68
2611 5004 0.326595 TCAAATGAGGGTGCCGCTTA 59.673 50.000 0.00 0.00 0.00 3.09
2612 5005 1.064758 TCAAATGAGGGTGCCGCTTAT 60.065 47.619 0.00 0.00 0.00 1.73
2614 5007 1.680338 AATGAGGGTGCCGCTTATTC 58.320 50.000 0.00 0.00 29.47 1.75
2615 5008 0.546122 ATGAGGGTGCCGCTTATTCA 59.454 50.000 0.00 0.00 0.00 2.57
2616 5009 0.326595 TGAGGGTGCCGCTTATTCAA 59.673 50.000 0.00 0.00 0.00 2.69
2617 5010 1.064758 TGAGGGTGCCGCTTATTCAAT 60.065 47.619 0.00 0.00 0.00 2.57
2618 5011 2.171659 TGAGGGTGCCGCTTATTCAATA 59.828 45.455 0.00 0.00 0.00 1.90
2619 5012 2.548480 GAGGGTGCCGCTTATTCAATAC 59.452 50.000 0.00 0.00 0.00 1.89
2620 5013 2.172717 AGGGTGCCGCTTATTCAATACT 59.827 45.455 0.00 0.00 0.00 2.12
2621 5014 2.548480 GGGTGCCGCTTATTCAATACTC 59.452 50.000 0.00 0.00 0.00 2.59
2631 5024 9.088512 CCGCTTATTCAATACTCCATTATAGTC 57.911 37.037 0.00 0.00 0.00 2.59
2673 5066 7.814107 TGCTTTTTAATGTTTCATGCTCCTAAG 59.186 33.333 0.00 0.00 0.00 2.18
2679 5072 9.515226 TTAATGTTTCATGCTCCTAAGTTAGTT 57.485 29.630 9.05 0.00 0.00 2.24
2682 5075 9.686683 ATGTTTCATGCTCCTAAGTTAGTTATT 57.313 29.630 9.05 0.00 0.00 1.40
2684 5077 8.947115 GTTTCATGCTCCTAAGTTAGTTATTGT 58.053 33.333 9.05 0.00 0.00 2.71
2685 5078 9.515226 TTTCATGCTCCTAAGTTAGTTATTGTT 57.485 29.630 9.05 0.00 0.00 2.83
2687 5080 8.540388 TCATGCTCCTAAGTTAGTTATTGTTCT 58.460 33.333 9.05 0.00 0.00 3.01
2688 5081 9.167311 CATGCTCCTAAGTTAGTTATTGTTCTT 57.833 33.333 9.05 0.00 0.00 2.52
2689 5082 8.547967 TGCTCCTAAGTTAGTTATTGTTCTTG 57.452 34.615 9.05 0.00 0.00 3.02
2723 5124 7.716799 ATGGTAGGCTTCATTTTGAACAATA 57.283 32.000 0.00 0.00 32.21 1.90
2744 5147 9.699410 ACAATACTGAATCAGGGAAATATTGAA 57.301 29.630 24.68 0.00 33.29 2.69
2768 5448 9.823098 GAATAATCTGTGCAACTATGATGAATC 57.177 33.333 0.00 0.00 38.04 2.52
3714 6609 5.639757 TGCTTTGTGGACATTATCAAATCG 58.360 37.500 0.00 0.00 31.08 3.34
3740 6672 7.823745 AGGTATGAACTTAGGCATATTTTGG 57.176 36.000 0.00 0.00 30.50 3.28
3827 6822 7.820872 TCTGTTGTAAGTATACTTGGTTTAGGC 59.179 37.037 25.27 9.58 37.40 3.93
3847 6842 2.500229 CTTGTCCCTTTCTTGCGGTTA 58.500 47.619 0.00 0.00 0.00 2.85
3853 6848 2.030274 CCCTTTCTTGCGGTTAACAAGG 60.030 50.000 8.10 9.43 43.79 3.61
3873 6870 2.989166 GGTTTTAGCTGCATTCAGTTGC 59.011 45.455 1.02 0.00 42.29 4.17
3913 6910 8.391106 GTTTGATTAGTATGACAAGTCACATCC 58.609 37.037 4.84 0.00 43.11 3.51
3935 6932 4.787598 CGCAGGATGAATATTTACAAGGC 58.212 43.478 0.00 0.00 39.69 4.35
3965 6963 1.339151 CCCAGGAAGCACAAGTAGGAC 60.339 57.143 0.00 0.00 0.00 3.85
4202 7548 8.851541 ATTGCAATGAAGTTTATTTGGTCAAT 57.148 26.923 12.09 0.00 0.00 2.57
4204 7550 9.941325 TTGCAATGAAGTTTATTTGGTCAATAT 57.059 25.926 0.00 0.00 0.00 1.28
4205 7551 9.585099 TGCAATGAAGTTTATTTGGTCAATATC 57.415 29.630 0.00 0.00 0.00 1.63
4250 7596 5.944007 GGGCAAACTCTATTAGTCTGGAAAA 59.056 40.000 0.00 0.00 37.50 2.29
4251 7597 6.603599 GGGCAAACTCTATTAGTCTGGAAAAT 59.396 38.462 0.00 0.00 37.50 1.82
4252 7598 7.201741 GGGCAAACTCTATTAGTCTGGAAAATC 60.202 40.741 0.00 0.00 37.50 2.17
4254 7600 8.730680 GCAAACTCTATTAGTCTGGAAAATCAA 58.269 33.333 0.00 0.00 37.50 2.57
4258 7604 7.928706 ACTCTATTAGTCTGGAAAATCAATCGG 59.071 37.037 0.00 0.00 30.33 4.18
4260 7606 2.369394 AGTCTGGAAAATCAATCGGCC 58.631 47.619 0.00 0.00 0.00 6.13
4262 7608 3.199946 AGTCTGGAAAATCAATCGGCCTA 59.800 43.478 0.00 0.00 0.00 3.93
4274 7620 3.637911 ATCGGCCTATGTGGTTTGTAA 57.362 42.857 0.00 0.00 38.35 2.41
4282 7628 4.326009 CCTATGTGGTTTGTAAAAATGCGC 59.674 41.667 0.00 0.00 0.00 6.09
4287 7634 3.670991 TGGTTTGTAAAAATGCGCGAATC 59.329 39.130 12.10 0.00 0.00 2.52
4299 7646 1.465020 GCGCGAATCCGTTTTGATCAA 60.465 47.619 12.10 3.38 38.24 2.57
4337 7692 5.452078 TGAGCACCCTTAGTTTTCAAATG 57.548 39.130 0.00 0.00 0.00 2.32
4340 7695 6.127196 TGAGCACCCTTAGTTTTCAAATGTTT 60.127 34.615 0.00 0.00 0.00 2.83
4714 8082 1.271163 TGGGTCGTCACCAAGAAATCC 60.271 52.381 0.00 0.00 45.94 3.01
4838 8221 4.586306 AAGGAGGAATTGTACCCGAAAT 57.414 40.909 0.00 0.00 0.00 2.17
4975 8364 1.133809 TCCTTCTGTTCCAGGGGGTG 61.134 60.000 0.00 0.00 34.93 4.61
5131 8521 1.874019 CATCACCGAACGCGAGAGG 60.874 63.158 15.93 15.10 40.82 3.69
5132 8522 2.341101 ATCACCGAACGCGAGAGGT 61.341 57.895 15.93 15.83 40.82 3.85
5163 8553 3.847081 TGATGATCATCAGAGAGAGGCT 58.153 45.455 30.27 0.00 42.42 4.58
5164 8554 3.574826 TGATGATCATCAGAGAGAGGCTG 59.425 47.826 30.27 0.00 42.42 4.85
5166 8556 3.639952 TGATCATCAGAGAGAGGCTGAA 58.360 45.455 0.00 0.00 44.71 3.02
5167 8557 4.028825 TGATCATCAGAGAGAGGCTGAAA 58.971 43.478 0.00 0.00 44.71 2.69
5168 8558 4.654724 TGATCATCAGAGAGAGGCTGAAAT 59.345 41.667 0.00 0.00 44.71 2.17
5169 8559 4.403585 TCATCAGAGAGAGGCTGAAATG 57.596 45.455 0.00 0.00 44.71 2.32
5170 8560 3.134262 TCATCAGAGAGAGGCTGAAATGG 59.866 47.826 0.00 0.00 44.71 3.16
5171 8561 2.825223 TCAGAGAGAGGCTGAAATGGA 58.175 47.619 0.00 0.00 39.29 3.41
5172 8562 3.176411 TCAGAGAGAGGCTGAAATGGAA 58.824 45.455 0.00 0.00 39.29 3.53
5173 8563 3.779183 TCAGAGAGAGGCTGAAATGGAAT 59.221 43.478 0.00 0.00 39.29 3.01
5174 8564 3.878103 CAGAGAGAGGCTGAAATGGAATG 59.122 47.826 0.00 0.00 35.39 2.67
5175 8565 3.779183 AGAGAGAGGCTGAAATGGAATGA 59.221 43.478 0.00 0.00 0.00 2.57
5176 8566 4.226846 AGAGAGAGGCTGAAATGGAATGAA 59.773 41.667 0.00 0.00 0.00 2.57
5177 8567 4.927049 AGAGAGGCTGAAATGGAATGAAA 58.073 39.130 0.00 0.00 0.00 2.69
5186 8576 7.334921 GGCTGAAATGGAATGAAATGAAAATGA 59.665 33.333 0.00 0.00 0.00 2.57
5324 8714 7.773224 TCTTCTTGACAGTTTACCTTCAAATGA 59.227 33.333 0.00 0.00 0.00 2.57
5363 8753 3.556513 TGTTGTTGTTGTTGTTGTCGTC 58.443 40.909 0.00 0.00 0.00 4.20
5364 8754 3.003378 TGTTGTTGTTGTTGTTGTCGTCA 59.997 39.130 0.00 0.00 0.00 4.35
5366 8756 4.009798 TGTTGTTGTTGTTGTCGTCATC 57.990 40.909 0.00 0.00 0.00 2.92
5480 8876 6.187727 TCTGTGTACTTTGAGGAAGGATTT 57.812 37.500 0.00 0.00 39.79 2.17
5507 8903 3.500982 CGAAATGTGTATGGTTTGGCTG 58.499 45.455 0.00 0.00 0.00 4.85
5529 8933 3.612479 GCTACTTTTGGCTTGTGATGGTG 60.612 47.826 0.00 0.00 0.00 4.17
5551 8968 1.282817 CGACGTTTTGGTCACTGTCA 58.717 50.000 0.00 0.00 36.73 3.58
5552 8969 1.257936 CGACGTTTTGGTCACTGTCAG 59.742 52.381 0.00 0.00 36.73 3.51
5578 8995 2.434702 AGGACGATTAGGGCCTAAGTTG 59.565 50.000 28.46 21.75 29.02 3.16
5579 8996 2.433239 GGACGATTAGGGCCTAAGTTGA 59.567 50.000 28.46 8.24 29.02 3.18
5599 9016 4.090057 GGCTTTGCTCCGTGCGTC 62.090 66.667 0.00 0.00 46.63 5.19
5602 9019 3.300667 CTTTGCTCCGTGCGTCTGC 62.301 63.158 0.00 0.00 46.63 4.26
5655 9076 2.618241 TGCTGTGTGTGATTTGTCCTTC 59.382 45.455 0.00 0.00 0.00 3.46
5682 9103 2.351738 GGACTGTTGTTGCTGTTATGCC 60.352 50.000 0.00 0.00 0.00 4.40
5693 9114 2.888534 TTATGCCGTCGCCTTCGC 60.889 61.111 0.00 0.00 35.26 4.70
5767 9188 2.161609 CAGTTGGGCAACGAGAAATACC 59.838 50.000 0.00 0.00 45.50 2.73
5779 9200 5.335127 ACGAGAAATACCATACGTGTACAC 58.665 41.667 16.32 16.32 32.93 2.90
5837 9278 2.567049 GCCGATCGCCTATACGCT 59.433 61.111 10.32 0.00 0.00 5.07
5868 9309 2.281830 CAGTCTGTCTGTCCCCTCC 58.718 63.158 0.00 0.00 39.17 4.30
5869 9310 0.252012 CAGTCTGTCTGTCCCCTCCT 60.252 60.000 0.00 0.00 39.17 3.69
5879 9331 3.406200 CCCCTCCTCTGTGCCTGG 61.406 72.222 0.00 0.00 0.00 4.45
5913 9365 2.364324 TCCACGGCTATCCATTGTAGAC 59.636 50.000 0.00 0.00 0.00 2.59
5920 9375 5.233988 GGCTATCCATTGTAGACACAGATC 58.766 45.833 0.00 0.00 35.67 2.75
5925 9380 7.798596 ATCCATTGTAGACACAGATCATTTC 57.201 36.000 0.00 0.00 35.67 2.17
5951 9406 6.150474 CCCTACACTCGGTCAAAATTTGTAAT 59.850 38.462 5.56 0.00 0.00 1.89
6004 9497 8.858003 TCTCTCTGTAAACAAATATAAGAGCG 57.142 34.615 0.00 0.00 0.00 5.03
6005 9498 8.467598 TCTCTCTGTAAACAAATATAAGAGCGT 58.532 33.333 0.00 0.00 0.00 5.07
6006 9499 8.997621 TCTCTGTAAACAAATATAAGAGCGTT 57.002 30.769 0.00 0.00 0.00 4.84
6007 9500 9.084164 TCTCTGTAAACAAATATAAGAGCGTTC 57.916 33.333 0.00 0.00 0.00 3.95
6008 9501 8.766000 TCTGTAAACAAATATAAGAGCGTTCA 57.234 30.769 1.01 0.00 0.00 3.18
6009 9502 8.869897 TCTGTAAACAAATATAAGAGCGTTCAG 58.130 33.333 1.01 0.00 0.00 3.02
6010 9503 8.766000 TGTAAACAAATATAAGAGCGTTCAGA 57.234 30.769 1.01 0.00 0.00 3.27
6011 9504 9.378551 TGTAAACAAATATAAGAGCGTTCAGAT 57.621 29.630 1.01 0.00 0.00 2.90
6012 9505 9.851043 GTAAACAAATATAAGAGCGTTCAGATC 57.149 33.333 1.01 0.00 35.01 2.75
6013 9506 8.492673 AAACAAATATAAGAGCGTTCAGATCA 57.507 30.769 1.01 0.00 37.82 2.92
6014 9507 7.470289 ACAAATATAAGAGCGTTCAGATCAC 57.530 36.000 1.01 0.00 37.82 3.06
6015 9508 7.268586 ACAAATATAAGAGCGTTCAGATCACT 58.731 34.615 1.01 0.00 37.82 3.41
6016 9509 8.414003 ACAAATATAAGAGCGTTCAGATCACTA 58.586 33.333 1.01 0.00 37.82 2.74
6017 9510 9.416794 CAAATATAAGAGCGTTCAGATCACTAT 57.583 33.333 1.01 0.00 37.82 2.12
6018 9511 9.988815 AAATATAAGAGCGTTCAGATCACTATT 57.011 29.630 1.01 0.00 37.82 1.73
6019 9512 9.632807 AATATAAGAGCGTTCAGATCACTATTC 57.367 33.333 1.01 0.00 37.82 1.75
6020 9513 5.590530 AAGAGCGTTCAGATCACTATTCT 57.409 39.130 1.01 0.00 37.82 2.40
6021 9514 6.701145 AAGAGCGTTCAGATCACTATTCTA 57.299 37.500 1.01 0.00 37.82 2.10
6022 9515 6.701145 AGAGCGTTCAGATCACTATTCTAA 57.299 37.500 1.01 0.00 37.82 2.10
6023 9516 7.283625 AGAGCGTTCAGATCACTATTCTAAT 57.716 36.000 1.01 0.00 37.82 1.73
6024 9517 7.144661 AGAGCGTTCAGATCACTATTCTAATG 58.855 38.462 1.01 0.00 37.82 1.90
6025 9518 7.013750 AGAGCGTTCAGATCACTATTCTAATGA 59.986 37.037 1.01 0.00 37.82 2.57
6026 9519 7.665690 AGCGTTCAGATCACTATTCTAATGAT 58.334 34.615 0.00 0.00 35.77 2.45
6027 9520 7.812191 AGCGTTCAGATCACTATTCTAATGATC 59.188 37.037 5.50 5.50 46.04 2.92
6059 9552 7.713942 GCTTTTATATTTCTTTACGGAGGGAGA 59.286 37.037 0.00 0.00 0.00 3.71
6061 9554 8.953368 TTTATATTTCTTTACGGAGGGAGAAC 57.047 34.615 0.00 0.00 0.00 3.01
6063 9556 4.532314 TTTCTTTACGGAGGGAGAACTC 57.468 45.455 0.00 0.00 36.76 3.01
6064 9557 3.165087 TCTTTACGGAGGGAGAACTCA 57.835 47.619 4.23 0.00 39.27 3.41
6118 9611 6.956520 CGTAGATTACTAGTGATGATGTAGCG 59.043 42.308 4.64 0.00 0.00 4.26
6144 9638 0.250338 AGTTTTGGACCTGAGACGGC 60.250 55.000 0.00 0.00 0.00 5.68
6262 9757 2.654749 TGATCAACGACAGAGCGATT 57.345 45.000 0.00 0.00 34.83 3.34
6265 9760 1.982612 TCAACGACAGAGCGATTGAG 58.017 50.000 0.00 0.00 32.17 3.02
6270 9765 2.203126 CAGAGCGATTGAGGGGGC 60.203 66.667 0.00 0.00 0.00 5.80
6295 9790 3.164268 TCAATTTGTCACATCAAGGGGG 58.836 45.455 0.00 0.00 0.00 5.40
6296 9791 2.899256 CAATTTGTCACATCAAGGGGGT 59.101 45.455 0.00 0.00 0.00 4.95
6298 9793 0.404040 TTGTCACATCAAGGGGGTCC 59.596 55.000 0.00 0.00 0.00 4.46
6318 9818 5.067954 GTCCTTGGCTGTTTTACTTTAGGA 58.932 41.667 0.00 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 149 4.803908 GCTGGAAGGGAAGGGGCG 62.804 72.222 0.00 0.00 0.00 6.13
201 212 8.842280 GTGTCTCATTAGCATAAGAGTACTACT 58.158 37.037 0.00 0.00 0.00 2.57
202 213 8.622157 TGTGTCTCATTAGCATAAGAGTACTAC 58.378 37.037 0.00 0.00 0.00 2.73
205 216 7.646130 GTCTGTGTCTCATTAGCATAAGAGTAC 59.354 40.741 0.00 0.00 0.00 2.73
208 219 6.475076 GTGTCTGTGTCTCATTAGCATAAGAG 59.525 42.308 0.00 0.00 0.00 2.85
209 220 6.333416 GTGTCTGTGTCTCATTAGCATAAGA 58.667 40.000 0.00 0.00 0.00 2.10
210 221 5.230936 CGTGTCTGTGTCTCATTAGCATAAG 59.769 44.000 0.00 0.00 0.00 1.73
211 222 5.102313 CGTGTCTGTGTCTCATTAGCATAA 58.898 41.667 0.00 0.00 0.00 1.90
224 241 0.109272 CATCTACCGCGTGTCTGTGT 60.109 55.000 4.92 0.00 0.00 3.72
227 244 0.172578 TTCCATCTACCGCGTGTCTG 59.827 55.000 4.92 2.21 0.00 3.51
228 245 0.456221 CTTCCATCTACCGCGTGTCT 59.544 55.000 4.92 0.00 0.00 3.41
229 246 1.146358 GCTTCCATCTACCGCGTGTC 61.146 60.000 4.92 0.00 0.00 3.67
230 247 1.153628 GCTTCCATCTACCGCGTGT 60.154 57.895 4.92 5.32 0.00 4.49
239 257 2.893398 GGGACGACGCTTCCATCT 59.107 61.111 6.81 0.00 34.45 2.90
278 296 2.031157 GGAAACCATGGTGTTCTTGTCG 60.031 50.000 20.60 0.00 0.00 4.35
285 303 1.770294 AACGTGGAAACCATGGTGTT 58.230 45.000 20.60 14.05 44.23 3.32
292 310 4.669206 TGACTAGTTAACGTGGAAACCA 57.331 40.909 0.00 0.00 0.00 3.67
334 2563 6.391649 AGTTGGTATAATAATCCCCAGTTGGA 59.608 38.462 0.00 0.00 39.18 3.53
336 2565 7.777910 TGAAGTTGGTATAATAATCCCCAGTTG 59.222 37.037 0.00 0.00 0.00 3.16
339 2568 7.944554 ACATGAAGTTGGTATAATAATCCCCAG 59.055 37.037 0.00 0.00 0.00 4.45
374 2603 3.043635 TCGTCAGCTCGATTAACGTAC 57.956 47.619 0.00 0.00 43.13 3.67
375 2604 3.419915 GTTCGTCAGCTCGATTAACGTA 58.580 45.455 0.00 0.00 43.13 3.57
376 2605 2.248487 GTTCGTCAGCTCGATTAACGT 58.752 47.619 0.00 0.00 43.13 3.99
426 2655 1.152989 CGGACGGACGGAGAGAGTAG 61.153 65.000 0.00 0.00 0.00 2.57
443 2672 2.794910 CAGATGTACACTTATTCCGCGG 59.205 50.000 22.12 22.12 0.00 6.46
444 2673 2.794910 CCAGATGTACACTTATTCCGCG 59.205 50.000 0.00 0.00 0.00 6.46
445 2674 4.054780 TCCAGATGTACACTTATTCCGC 57.945 45.455 0.00 0.00 0.00 5.54
446 2675 7.409697 CAAAATCCAGATGTACACTTATTCCG 58.590 38.462 0.00 0.00 0.00 4.30
447 2676 7.196331 GCAAAATCCAGATGTACACTTATTCC 58.804 38.462 0.00 0.00 0.00 3.01
464 2693 2.423538 AGTTGATACTGCGGCAAAATCC 59.576 45.455 16.96 6.92 31.99 3.01
498 2746 3.535280 TCAGTGCCATAAATGCGACTA 57.465 42.857 0.00 0.00 0.00 2.59
499 2747 2.401583 TCAGTGCCATAAATGCGACT 57.598 45.000 0.00 0.00 0.00 4.18
500 2748 3.698029 ATTCAGTGCCATAAATGCGAC 57.302 42.857 0.00 0.00 0.00 5.19
501 2749 4.881273 ACTAATTCAGTGCCATAAATGCGA 59.119 37.500 0.00 0.00 35.62 5.10
572 2821 6.721571 AGAAAAGTGTAACCATATGTGACG 57.278 37.500 1.24 0.00 37.80 4.35
651 2902 5.937492 ATCCCTCCTCCATGAATAAATGT 57.063 39.130 0.00 0.00 0.00 2.71
706 2965 1.461268 TGGTTCCAGCTGGAGACCA 60.461 57.895 38.63 38.63 46.36 4.02
726 2994 0.251077 CTCTGGCTTCACTTTGGCCT 60.251 55.000 3.32 0.00 45.45 5.19
742 3010 5.484998 AGAGAAGAAAATTCAGAGCTCCTCT 59.515 40.000 10.93 7.46 42.11 3.69
743 3011 5.733676 AGAGAAGAAAATTCAGAGCTCCTC 58.266 41.667 10.93 5.15 0.00 3.71
744 3012 5.760484 AGAGAAGAAAATTCAGAGCTCCT 57.240 39.130 10.93 0.00 0.00 3.69
745 3013 6.816134 AAAGAGAAGAAAATTCAGAGCTCC 57.184 37.500 10.93 0.00 0.00 4.70
746 3014 8.098220 AGAAAAGAGAAGAAAATTCAGAGCTC 57.902 34.615 5.27 5.27 0.00 4.09
747 3015 8.998377 GTAGAAAAGAGAAGAAAATTCAGAGCT 58.002 33.333 0.00 0.00 0.00 4.09
828 3101 6.553852 CCTTTATACATACACACCCCTACTCT 59.446 42.308 0.00 0.00 0.00 3.24
829 3102 6.740681 GCCTTTATACATACACACCCCTACTC 60.741 46.154 0.00 0.00 0.00 2.59
830 3103 5.071384 GCCTTTATACATACACACCCCTACT 59.929 44.000 0.00 0.00 0.00 2.57
831 3104 5.303165 GCCTTTATACATACACACCCCTAC 58.697 45.833 0.00 0.00 0.00 3.18
832 3105 4.348754 GGCCTTTATACATACACACCCCTA 59.651 45.833 0.00 0.00 0.00 3.53
923 3206 1.675415 GGAGGAAACAGCTCAGCTCTG 60.675 57.143 0.00 0.00 36.40 3.35
924 3207 0.612744 GGAGGAAACAGCTCAGCTCT 59.387 55.000 0.00 0.00 36.40 4.09
944 3227 1.022903 AGGAGTGAGGGGAGGAAGAT 58.977 55.000 0.00 0.00 0.00 2.40
1077 3370 0.114560 ACGGAAGAAGAGACAGGGGA 59.885 55.000 0.00 0.00 0.00 4.81
1102 3396 1.716826 GAGCTAGAGGTGGACGGACG 61.717 65.000 0.00 0.00 0.00 4.79
1103 3397 1.385756 GGAGCTAGAGGTGGACGGAC 61.386 65.000 0.00 0.00 0.00 4.79
1104 3398 1.076923 GGAGCTAGAGGTGGACGGA 60.077 63.158 0.00 0.00 0.00 4.69
1105 3399 1.379977 TGGAGCTAGAGGTGGACGG 60.380 63.158 0.00 0.00 0.00 4.79
1136 3430 2.076100 CAACACACACACACACACTCT 58.924 47.619 0.00 0.00 0.00 3.24
1138 3432 2.177394 TCAACACACACACACACACT 57.823 45.000 0.00 0.00 0.00 3.55
1143 3437 2.545526 CTCCTCATCAACACACACACAC 59.454 50.000 0.00 0.00 0.00 3.82
1144 3438 2.485302 CCTCCTCATCAACACACACACA 60.485 50.000 0.00 0.00 0.00 3.72
1933 4293 3.039526 CCCCCTCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
1934 4294 3.036959 TCCCCCTCCTCCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
1936 4296 1.869452 AACTCCCCCTCCTCCTCCT 60.869 63.158 0.00 0.00 0.00 3.69
1937 4297 1.383386 GAACTCCCCCTCCTCCTCC 60.383 68.421 0.00 0.00 0.00 4.30
1938 4298 1.383386 GGAACTCCCCCTCCTCCTC 60.383 68.421 0.00 0.00 0.00 3.71
2005 4365 7.173390 TGGAAATTCGTTTCTTTTGGTTTTTGT 59.827 29.630 1.50 0.00 0.00 2.83
2173 4533 3.469739 TCTATCCGCCGGTTAATTTTCC 58.530 45.455 1.63 0.00 0.00 3.13
2184 4544 0.888619 TGGCTCTTATCTATCCGCCG 59.111 55.000 0.00 0.00 40.31 6.46
2187 4547 5.508825 GCATCCTATGGCTCTTATCTATCCG 60.509 48.000 0.00 0.00 0.00 4.18
2245 4605 1.506309 TTGCGTTACTGGCACTGCAG 61.506 55.000 13.48 13.48 40.71 4.41
2288 4648 0.603975 GCAACACTCCAGTCCAGTCC 60.604 60.000 0.00 0.00 0.00 3.85
2289 4649 0.394565 AGCAACACTCCAGTCCAGTC 59.605 55.000 0.00 0.00 0.00 3.51
2290 4650 0.839946 AAGCAACACTCCAGTCCAGT 59.160 50.000 0.00 0.00 0.00 4.00
2291 4651 1.233019 CAAGCAACACTCCAGTCCAG 58.767 55.000 0.00 0.00 0.00 3.86
2359 4726 3.596214 AGCCATCACGTTAACCAACTAG 58.404 45.455 0.00 0.00 32.09 2.57
2381 4748 6.179040 CCCAACACTCAGTAGTAGTAGTAGT 58.821 44.000 0.00 0.00 33.48 2.73
2382 4749 6.093771 CACCCAACACTCAGTAGTAGTAGTAG 59.906 46.154 0.00 0.00 33.48 2.57
2383 4750 5.942236 CACCCAACACTCAGTAGTAGTAGTA 59.058 44.000 0.00 0.00 33.48 1.82
2442 4821 0.108585 CCCACATACTCCATTCCGGG 59.891 60.000 0.00 0.00 34.36 5.73
2457 4836 2.206576 AATGGAACTCTTCAGCCCAC 57.793 50.000 0.00 0.00 30.78 4.61
2495 4874 4.202461 TGGGATGTGCTTTAGAAACACTCT 60.202 41.667 0.00 0.00 38.28 3.24
2533 4912 3.874383 TGTGTCTTGGGATGGAAAAGA 57.126 42.857 0.00 0.00 0.00 2.52
2534 4913 5.473066 AAATGTGTCTTGGGATGGAAAAG 57.527 39.130 0.00 0.00 0.00 2.27
2538 4917 5.253330 GTCTAAAATGTGTCTTGGGATGGA 58.747 41.667 0.00 0.00 0.00 3.41
2540 4919 4.437390 GCGTCTAAAATGTGTCTTGGGATG 60.437 45.833 0.00 0.00 0.00 3.51
2542 4921 3.071479 GCGTCTAAAATGTGTCTTGGGA 58.929 45.455 0.00 0.00 0.00 4.37
2543 4922 2.159707 CGCGTCTAAAATGTGTCTTGGG 60.160 50.000 0.00 0.00 0.00 4.12
2564 4953 3.181504 GCAAATGAATTGAATTGGCAGCC 60.182 43.478 3.66 3.66 41.85 4.85
2569 4958 4.693566 ACAGCAGCAAATGAATTGAATTGG 59.306 37.500 0.00 0.00 41.85 3.16
2594 4987 2.024414 GAATAAGCGGCACCCTCATTT 58.976 47.619 1.45 0.00 0.00 2.32
2596 4989 0.546122 TGAATAAGCGGCACCCTCAT 59.454 50.000 1.45 0.00 0.00 2.90
2605 4998 9.088512 GACTATAATGGAGTATTGAATAAGCGG 57.911 37.037 0.00 0.00 0.00 5.52
2664 5057 8.154856 ACAAGAACAATAACTAACTTAGGAGCA 58.845 33.333 0.88 0.00 0.00 4.26
2665 5058 8.549338 ACAAGAACAATAACTAACTTAGGAGC 57.451 34.615 0.88 0.00 0.00 4.70
2680 5073 9.981114 CCTACCATTAAAAAGAACAAGAACAAT 57.019 29.630 0.00 0.00 0.00 2.71
2682 5075 7.286775 AGCCTACCATTAAAAAGAACAAGAACA 59.713 33.333 0.00 0.00 0.00 3.18
2684 5077 7.833285 AGCCTACCATTAAAAAGAACAAGAA 57.167 32.000 0.00 0.00 0.00 2.52
2685 5078 7.504238 TGAAGCCTACCATTAAAAAGAACAAGA 59.496 33.333 0.00 0.00 0.00 3.02
2687 5080 7.589958 TGAAGCCTACCATTAAAAAGAACAA 57.410 32.000 0.00 0.00 0.00 2.83
2688 5081 7.775053 ATGAAGCCTACCATTAAAAAGAACA 57.225 32.000 0.00 0.00 0.00 3.18
2689 5082 9.489084 AAAATGAAGCCTACCATTAAAAAGAAC 57.511 29.630 0.00 0.00 33.13 3.01
2693 5086 9.267084 GTTCAAAATGAAGCCTACCATTAAAAA 57.733 29.630 0.00 0.00 37.00 1.94
2695 5088 7.957002 TGTTCAAAATGAAGCCTACCATTAAA 58.043 30.769 0.00 0.00 37.00 1.52
2700 5093 6.719370 AGTATTGTTCAAAATGAAGCCTACCA 59.281 34.615 0.00 0.00 37.00 3.25
2744 5147 9.570468 AAGATTCATCATAGTTGCACAGATTAT 57.430 29.630 0.00 0.00 0.00 1.28
2768 5448 9.649167 AAGGAATGAGCTAAAATTTGATTCAAG 57.351 29.630 0.00 0.00 0.00 3.02
3527 6408 7.448748 ACCATACAGAAAAGTCATAAACCAC 57.551 36.000 0.00 0.00 0.00 4.16
3714 6609 8.352942 CCAAAATATGCCTAAGTTCATACCTTC 58.647 37.037 0.00 0.00 0.00 3.46
3757 6741 4.144297 CAGTTCAACTCATCTTTTCCCCA 58.856 43.478 0.00 0.00 0.00 4.96
3804 6799 8.448615 CAAGCCTAAACCAAGTATACTTACAAC 58.551 37.037 17.62 3.35 34.28 3.32
3827 6822 1.318576 AACCGCAAGAAAGGGACAAG 58.681 50.000 0.00 0.00 43.02 3.16
3847 6842 4.342092 ACTGAATGCAGCTAAAACCTTGTT 59.658 37.500 0.00 0.00 46.26 2.83
3913 6910 4.516698 AGCCTTGTAAATATTCATCCTGCG 59.483 41.667 0.00 0.00 0.00 5.18
3935 6932 4.272489 TGTGCTTCCTGGGAAATAATCAG 58.728 43.478 3.55 0.00 33.34 2.90
3965 6963 5.914635 AGTCATGAAAACTTGCAAACATACG 59.085 36.000 0.00 0.00 0.00 3.06
4003 7019 6.665465 ACTTCAAGCGGAACAAAGTTTATAC 58.335 36.000 0.00 0.00 0.00 1.47
4004 7020 6.870971 ACTTCAAGCGGAACAAAGTTTATA 57.129 33.333 0.00 0.00 0.00 0.98
4049 7262 7.391148 AGAACCATTAAACAATATGCGAGTT 57.609 32.000 0.00 0.00 0.00 3.01
4202 7548 9.173021 CCCAAAATTTGATAGTACTGTGTGATA 57.827 33.333 7.37 0.00 0.00 2.15
4204 7550 6.072175 GCCCAAAATTTGATAGTACTGTGTGA 60.072 38.462 7.37 0.00 0.00 3.58
4205 7551 6.092748 GCCCAAAATTTGATAGTACTGTGTG 58.907 40.000 7.37 0.00 0.00 3.82
4207 7553 6.266168 TGCCCAAAATTTGATAGTACTGTG 57.734 37.500 7.37 0.00 0.00 3.66
4225 7571 4.101114 TCCAGACTAATAGAGTTTGCCCA 58.899 43.478 0.00 0.00 38.65 5.36
4250 7596 2.951642 CAAACCACATAGGCCGATTGAT 59.048 45.455 9.24 0.00 43.14 2.57
4251 7597 2.290641 ACAAACCACATAGGCCGATTGA 60.291 45.455 9.24 0.00 43.14 2.57
4252 7598 2.091541 ACAAACCACATAGGCCGATTG 58.908 47.619 0.00 0.00 43.14 2.67
4254 7600 3.637911 TTACAAACCACATAGGCCGAT 57.362 42.857 0.00 0.00 43.14 4.18
4256 7602 4.506886 TTTTTACAAACCACATAGGCCG 57.493 40.909 0.00 0.00 43.14 6.13
4258 7604 4.326009 CGCATTTTTACAAACCACATAGGC 59.674 41.667 0.00 0.00 43.14 3.93
4260 7606 4.030083 CGCGCATTTTTACAAACCACATAG 59.970 41.667 8.75 0.00 0.00 2.23
4262 7608 2.728839 CGCGCATTTTTACAAACCACAT 59.271 40.909 8.75 0.00 0.00 3.21
4274 7620 1.718711 CAAAACGGATTCGCGCATTTT 59.281 42.857 8.75 0.00 40.63 1.82
4282 7628 5.631026 AGAATGTTGATCAAAACGGATTCG 58.369 37.500 10.35 0.00 43.02 3.34
4287 7634 5.856455 GGTGTAAGAATGTTGATCAAAACGG 59.144 40.000 10.35 0.00 32.47 4.44
4299 7646 4.256920 GTGCTCATCAGGTGTAAGAATGT 58.743 43.478 0.00 0.00 0.00 2.71
4337 7692 7.450323 AGTGGTACATAAATATATGGGGCAAAC 59.550 37.037 0.00 0.00 44.52 2.93
4340 7695 6.273495 TCAGTGGTACATAAATATATGGGGCA 59.727 38.462 0.00 0.00 44.52 5.36
4415 7783 6.823689 CGGAGGAGAAAGAAAAGGAATATCAA 59.176 38.462 0.00 0.00 0.00 2.57
4838 8221 5.881443 TGTGTTTCTTCTTTTTAGGTTCCGA 59.119 36.000 0.00 0.00 0.00 4.55
4975 8364 1.731969 CCCGACGACCAAGAACGAC 60.732 63.158 0.00 0.00 0.00 4.34
5077 8467 1.135699 CCACGCGCTTCATCAAATGC 61.136 55.000 5.73 0.00 0.00 3.56
5131 8521 0.179702 TGATCATCAGCCAGAGCCAC 59.820 55.000 0.00 0.00 41.25 5.01
5132 8522 1.071857 GATGATCATCAGCCAGAGCCA 59.928 52.381 27.30 0.00 41.25 4.75
5159 8549 6.363167 TTTCATTTCATTCCATTTCAGCCT 57.637 33.333 0.00 0.00 0.00 4.58
5160 8550 7.334921 TCATTTTCATTTCATTCCATTTCAGCC 59.665 33.333 0.00 0.00 0.00 4.85
5161 8551 8.259049 TCATTTTCATTTCATTCCATTTCAGC 57.741 30.769 0.00 0.00 0.00 4.26
5168 8558 8.784994 CCAACATTTCATTTTCATTTCATTCCA 58.215 29.630 0.00 0.00 0.00 3.53
5169 8559 8.238631 CCCAACATTTCATTTTCATTTCATTCC 58.761 33.333 0.00 0.00 0.00 3.01
5170 8560 8.238631 CCCCAACATTTCATTTTCATTTCATTC 58.761 33.333 0.00 0.00 0.00 2.67
5171 8561 7.724951 ACCCCAACATTTCATTTTCATTTCATT 59.275 29.630 0.00 0.00 0.00 2.57
5172 8562 7.232910 ACCCCAACATTTCATTTTCATTTCAT 58.767 30.769 0.00 0.00 0.00 2.57
5173 8563 6.599445 ACCCCAACATTTCATTTTCATTTCA 58.401 32.000 0.00 0.00 0.00 2.69
5174 8564 7.013178 ACAACCCCAACATTTCATTTTCATTTC 59.987 33.333 0.00 0.00 0.00 2.17
5175 8565 6.832900 ACAACCCCAACATTTCATTTTCATTT 59.167 30.769 0.00 0.00 0.00 2.32
5176 8566 6.363882 ACAACCCCAACATTTCATTTTCATT 58.636 32.000 0.00 0.00 0.00 2.57
5177 8567 5.939447 ACAACCCCAACATTTCATTTTCAT 58.061 33.333 0.00 0.00 0.00 2.57
5186 8576 6.493458 GCCATATATCTACAACCCCAACATTT 59.507 38.462 0.00 0.00 0.00 2.32
5257 8647 1.420430 TATCCACCGAAGACCCATCC 58.580 55.000 0.00 0.00 0.00 3.51
5261 8651 3.294214 TCTAGTTATCCACCGAAGACCC 58.706 50.000 0.00 0.00 0.00 4.46
5324 8714 6.509418 ACAACAACAACAACAGTATCACTT 57.491 33.333 0.00 0.00 0.00 3.16
5363 8753 9.599866 TTCCAAAGTACTACATTACAGATGATG 57.400 33.333 0.00 0.00 0.00 3.07
5366 8756 8.338259 GCATTCCAAAGTACTACATTACAGATG 58.662 37.037 0.00 0.00 0.00 2.90
5507 8903 2.558359 ACCATCACAAGCCAAAAGTAGC 59.442 45.455 0.00 0.00 0.00 3.58
5529 8933 1.890510 AGTGACCAAAACGTCGGCC 60.891 57.895 0.00 0.00 35.40 6.13
5551 8968 1.404843 GCCCTAATCGTCCTCTCACT 58.595 55.000 0.00 0.00 0.00 3.41
5552 8969 0.389757 GGCCCTAATCGTCCTCTCAC 59.610 60.000 0.00 0.00 0.00 3.51
5578 8995 2.747855 CACGGAGCAAAGCCCCTC 60.748 66.667 0.00 0.00 0.00 4.30
5594 9011 4.724602 GGACTGCTCGCAGACGCA 62.725 66.667 24.30 2.01 46.30 5.24
5595 9012 3.997064 ATGGACTGCTCGCAGACGC 62.997 63.158 24.30 12.74 46.30 5.19
5602 9019 2.821366 GGCCACATGGACTGCTCG 60.821 66.667 0.87 0.00 41.12 5.03
5603 9020 2.821366 CGGCCACATGGACTGCTC 60.821 66.667 2.24 0.00 42.58 4.26
5655 9076 1.069703 CAGCAACAACAGTCCATCACG 60.070 52.381 0.00 0.00 0.00 4.35
5693 9114 3.684788 AGTAGTAAAATGCAAGTGCCGAG 59.315 43.478 0.00 0.00 41.18 4.63
5751 9172 2.542595 CGTATGGTATTTCTCGTTGCCC 59.457 50.000 0.00 0.00 0.00 5.36
5767 9188 1.640428 CCAGCTGGTGTACACGTATG 58.360 55.000 25.53 14.23 0.00 2.39
5779 9200 0.674895 GCAGACAGTAACCCAGCTGG 60.675 60.000 26.87 26.87 37.07 4.85
5823 9264 1.135632 GGTCTGAGCGTATAGGCGATC 60.136 57.143 11.51 5.85 45.99 3.69
5837 9278 1.832608 AGACTGTGTGCGGGTCTGA 60.833 57.895 0.00 0.00 38.65 3.27
5863 9304 1.783250 AAACCAGGCACAGAGGAGGG 61.783 60.000 0.00 0.00 0.00 4.30
5868 9309 2.038295 AGAGAAGAAACCAGGCACAGAG 59.962 50.000 0.00 0.00 0.00 3.35
5869 9310 2.037772 GAGAGAAGAAACCAGGCACAGA 59.962 50.000 0.00 0.00 0.00 3.41
5879 9331 2.070028 GCCGTGGAAGAGAGAAGAAAC 58.930 52.381 0.00 0.00 0.00 2.78
5913 9365 4.446371 GAGTGTAGGGGAAATGATCTGTG 58.554 47.826 0.00 0.00 0.00 3.66
5920 9375 1.553248 TGACCGAGTGTAGGGGAAATG 59.447 52.381 0.00 0.00 0.00 2.32
5925 9380 2.781681 ATTTTGACCGAGTGTAGGGG 57.218 50.000 0.00 0.00 0.00 4.79
5979 9472 8.467598 ACGCTCTTATATTTGTTTACAGAGAGA 58.532 33.333 4.35 0.00 32.02 3.10
5983 9476 8.766000 TGAACGCTCTTATATTTGTTTACAGA 57.234 30.769 0.00 0.00 0.00 3.41
5984 9477 8.869897 TCTGAACGCTCTTATATTTGTTTACAG 58.130 33.333 0.00 0.00 0.00 2.74
5985 9478 8.766000 TCTGAACGCTCTTATATTTGTTTACA 57.234 30.769 0.00 0.00 0.00 2.41
5986 9479 9.851043 GATCTGAACGCTCTTATATTTGTTTAC 57.149 33.333 0.00 0.00 0.00 2.01
5987 9480 9.594478 TGATCTGAACGCTCTTATATTTGTTTA 57.406 29.630 0.00 0.00 0.00 2.01
5989 9482 7.766278 AGTGATCTGAACGCTCTTATATTTGTT 59.234 33.333 0.00 0.00 0.00 2.83
5991 9484 7.706281 AGTGATCTGAACGCTCTTATATTTG 57.294 36.000 0.00 0.00 0.00 2.32
5992 9485 9.988815 AATAGTGATCTGAACGCTCTTATATTT 57.011 29.630 4.17 0.00 0.00 1.40
5995 9488 8.397575 AGAATAGTGATCTGAACGCTCTTATA 57.602 34.615 4.17 0.00 0.00 0.98
5997 9490 6.701145 AGAATAGTGATCTGAACGCTCTTA 57.299 37.500 4.17 0.00 0.00 2.10
6000 9493 7.142021 TCATTAGAATAGTGATCTGAACGCTC 58.858 38.462 4.17 0.00 31.97 5.03
6001 9494 7.043961 TCATTAGAATAGTGATCTGAACGCT 57.956 36.000 6.26 6.26 31.97 5.07
6002 9495 7.881643 ATCATTAGAATAGTGATCTGAACGC 57.118 36.000 0.00 0.00 43.46 4.84
6030 9523 8.630037 CCCTCCGTAAAGAAATATAAAAGCATT 58.370 33.333 0.00 0.00 0.00 3.56
6031 9524 7.996644 TCCCTCCGTAAAGAAATATAAAAGCAT 59.003 33.333 0.00 0.00 0.00 3.79
6032 9525 7.340256 TCCCTCCGTAAAGAAATATAAAAGCA 58.660 34.615 0.00 0.00 0.00 3.91
6033 9526 7.713942 TCTCCCTCCGTAAAGAAATATAAAAGC 59.286 37.037 0.00 0.00 0.00 3.51
6034 9527 9.609346 TTCTCCCTCCGTAAAGAAATATAAAAG 57.391 33.333 0.00 0.00 0.00 2.27
6035 9528 9.387257 GTTCTCCCTCCGTAAAGAAATATAAAA 57.613 33.333 0.00 0.00 30.10 1.52
6036 9529 8.765517 AGTTCTCCCTCCGTAAAGAAATATAAA 58.234 33.333 0.00 0.00 30.10 1.40
6045 9538 2.826725 AGTGAGTTCTCCCTCCGTAAAG 59.173 50.000 0.00 0.00 0.00 1.85
6046 9539 2.885616 AGTGAGTTCTCCCTCCGTAAA 58.114 47.619 0.00 0.00 0.00 2.01
6047 9540 2.599408 AGTGAGTTCTCCCTCCGTAA 57.401 50.000 0.00 0.00 0.00 3.18
6048 9541 3.947612 ATAGTGAGTTCTCCCTCCGTA 57.052 47.619 0.00 0.00 0.00 4.02
6063 9556 9.307121 GCCTTGCTTCACTACATATATATAGTG 57.693 37.037 20.62 20.62 46.46 2.74
6064 9557 9.035890 TGCCTTGCTTCACTACATATATATAGT 57.964 33.333 0.00 0.00 31.65 2.12
6139 9633 0.249114 GCTAGCTAGACAAGGCCGTC 60.249 60.000 25.15 0.00 36.08 4.79
6144 9638 4.402793 TGGAAACTAGCTAGCTAGACAAGG 59.597 45.833 43.93 25.85 46.56 3.61
6265 9760 0.544120 TGACAAATTGAAGGGCCCCC 60.544 55.000 21.43 12.05 0.00 5.40
6270 9765 4.322198 CCCTTGATGTGACAAATTGAAGGG 60.322 45.833 16.64 16.64 0.00 3.95
6295 9790 5.067954 TCCTAAAGTAAAACAGCCAAGGAC 58.932 41.667 0.00 0.00 0.00 3.85
6296 9791 5.313280 TCCTAAAGTAAAACAGCCAAGGA 57.687 39.130 0.00 0.00 0.00 3.36
6298 9793 7.223971 GGTTTTTCCTAAAGTAAAACAGCCAAG 59.776 37.037 0.00 0.00 41.30 3.61
6300 9795 6.154706 TGGTTTTTCCTAAAGTAAAACAGCCA 59.845 34.615 0.00 6.80 41.30 4.75
6301 9796 6.477688 GTGGTTTTTCCTAAAGTAAAACAGCC 59.522 38.462 0.00 5.07 41.30 4.85
6305 9800 5.459762 GGCGTGGTTTTTCCTAAAGTAAAAC 59.540 40.000 0.00 0.00 39.71 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.