Multiple sequence alignment - TraesCS3A01G298300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G298300 chr3A 100.000 7127 0 0 1 7127 532651854 532644728 0.000000e+00 13162.0
1 TraesCS3A01G298300 chr3A 94.118 51 1 1 7079 7127 532488579 532488529 7.670000e-10 76.8
2 TraesCS3A01G298300 chr3D 93.657 6558 241 81 622 7078 418403969 418410452 0.000000e+00 9644.0
3 TraesCS3A01G298300 chr3D 87.219 579 38 20 27 589 418403418 418403976 1.690000e-175 627.0
4 TraesCS3A01G298300 chr3D 88.618 369 21 9 6563 6911 418481907 418482274 5.110000e-116 429.0
5 TraesCS3A01G298300 chr3D 88.380 284 14 7 6646 6911 418704887 418705169 2.480000e-84 324.0
6 TraesCS3A01G298300 chr3D 94.545 55 1 1 7075 7127 418410486 418410540 4.580000e-12 84.2
7 TraesCS3A01G298300 chr3D 94.444 54 1 1 7076 7127 418482388 418482441 1.650000e-11 82.4
8 TraesCS3A01G298300 chr3D 92.593 54 2 1 7076 7127 418705291 418705344 7.670000e-10 76.8
9 TraesCS3A01G298300 chr3B 94.406 2181 73 15 4936 7074 544816792 544818965 0.000000e+00 3306.0
10 TraesCS3A01G298300 chr3B 93.548 124 6 2 6577 6699 545008196 545008318 4.390000e-42 183.0
11 TraesCS3A01G298300 chr3B 94.215 121 4 3 6580 6699 544921555 544921673 1.580000e-41 182.0
12 TraesCS3A01G298300 chr3B 84.153 183 14 2 6743 6911 545008319 545008500 5.720000e-36 163.0
13 TraesCS3A01G298300 chr3B 83.060 183 16 2 6743 6911 544921674 544921855 1.240000e-32 152.0
14 TraesCS3A01G298300 chr3B 90.741 54 3 1 7076 7127 544921969 544922022 3.570000e-08 71.3
15 TraesCS3A01G298300 chr3B 90.741 54 3 1 7076 7127 545008614 545008667 3.570000e-08 71.3
16 TraesCS3A01G298300 chr4B 87.162 148 10 6 6151 6295 498417448 498417589 7.400000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G298300 chr3A 532644728 532651854 7126 True 13162.000000 13162 100.000 1 7127 1 chr3A.!!$R2 7126
1 TraesCS3A01G298300 chr3D 418403418 418410540 7122 False 3451.733333 9644 91.807 27 7127 3 chr3D.!!$F1 7100
2 TraesCS3A01G298300 chr3D 418481907 418482441 534 False 255.700000 429 91.531 6563 7127 2 chr3D.!!$F2 564
3 TraesCS3A01G298300 chr3B 544816792 544818965 2173 False 3306.000000 3306 94.406 4936 7074 1 chr3B.!!$F1 2138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
847 870 0.032017 GGAGGGAGAAGTAGGAGGCA 60.032 60.000 0.00 0.0 0.00 4.75 F
1183 1246 0.034089 GGTGCTGCCCTGGTAGATTT 60.034 55.000 5.38 0.0 0.00 2.17 F
1186 1249 0.034089 GCTGCCCTGGTAGATTTGGT 60.034 55.000 5.38 0.0 0.00 3.67 F
1315 1398 0.112995 TTCCCATGCTGTTCTTGCCT 59.887 50.000 0.00 0.0 0.00 4.75 F
1316 1399 0.322816 TCCCATGCTGTTCTTGCCTC 60.323 55.000 0.00 0.0 0.00 4.70 F
1317 1400 0.323178 CCCATGCTGTTCTTGCCTCT 60.323 55.000 0.00 0.0 0.00 3.69 F
1940 2025 0.389025 GTTTTCTTGCACCCACCCTG 59.611 55.000 0.00 0.0 0.00 4.45 F
3238 3342 1.064758 TGTCTGTTGTGCCTTCACCTT 60.065 47.619 0.00 0.0 42.46 3.50 F
4650 4759 0.625316 TCCAACCATCCCACCATCAG 59.375 55.000 0.00 0.0 0.00 2.90 F
5301 5410 0.835941 CTAGCCAGGCACAGGAGAAT 59.164 55.000 15.80 0.0 37.04 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 2008 0.032615 AACAGGGTGGGTGCAAGAAA 60.033 50.000 0.00 0.0 0.00 2.52 R
2099 2184 0.744281 GGGTCAAACAACACAGGTGG 59.256 55.000 4.24 0.0 34.19 4.61 R
2284 2370 0.880278 ACGACGCAATGTTGACTGCT 60.880 50.000 0.00 0.0 36.38 4.24 R
3222 3326 0.107410 ACGAAGGTGAAGGCACAACA 60.107 50.000 0.00 0.0 46.96 3.33 R
3223 3327 0.586802 GACGAAGGTGAAGGCACAAC 59.413 55.000 0.00 0.0 46.96 3.32 R
3227 3331 1.134220 ACAAAGACGAAGGTGAAGGCA 60.134 47.619 0.00 0.0 0.00 4.75 R
3891 4000 1.886222 CGAGGCCACAAGGGATTGAAA 60.886 52.381 5.01 0.0 40.01 2.69 R
5178 5287 0.615850 CTTTCTCCAGGGACCTCACC 59.384 60.000 0.00 0.0 0.00 4.02 R
5646 5755 0.606401 GGCAAGCACTAAGAGCACCA 60.606 55.000 0.00 0.0 0.00 4.17 R
6910 7050 0.962855 GGTGGCCTCTCTTTTGCTCC 60.963 60.000 3.32 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.932303 TCATTCTCACTTTAAAACGGAGGAG 59.068 40.000 9.33 0.00 0.00 3.69
54 55 3.067684 ACGGAGGAGGTAACATTTTGG 57.932 47.619 0.00 0.00 41.41 3.28
68 69 6.660887 AACATTTTGGTGTAAACAAAGCAG 57.339 33.333 0.00 0.00 38.84 4.24
77 78 0.894141 AAACAAAGCAGCACACCACA 59.106 45.000 0.00 0.00 0.00 4.17
78 79 1.113788 AACAAAGCAGCACACCACAT 58.886 45.000 0.00 0.00 0.00 3.21
83 84 0.327259 AGCAGCACACCACATCTCAT 59.673 50.000 0.00 0.00 0.00 2.90
84 85 1.556451 AGCAGCACACCACATCTCATA 59.444 47.619 0.00 0.00 0.00 2.15
85 86 2.172082 AGCAGCACACCACATCTCATAT 59.828 45.455 0.00 0.00 0.00 1.78
86 87 2.947652 GCAGCACACCACATCTCATATT 59.052 45.455 0.00 0.00 0.00 1.28
125 126 6.932356 AACAGTAACATAGGATGCTTGATG 57.068 37.500 0.00 0.00 0.00 3.07
127 128 5.061853 CAGTAACATAGGATGCTTGATGCT 58.938 41.667 0.00 0.00 43.37 3.79
129 130 4.913335 AACATAGGATGCTTGATGCTTG 57.087 40.909 0.00 0.00 43.37 4.01
130 131 4.160642 ACATAGGATGCTTGATGCTTGA 57.839 40.909 0.00 0.00 43.37 3.02
131 132 4.726583 ACATAGGATGCTTGATGCTTGAT 58.273 39.130 0.00 0.00 43.37 2.57
132 133 4.760715 ACATAGGATGCTTGATGCTTGATC 59.239 41.667 0.00 0.00 43.37 2.92
133 134 2.584236 AGGATGCTTGATGCTTGATCC 58.416 47.619 0.00 0.00 40.23 3.36
134 135 1.612463 GGATGCTTGATGCTTGATCCC 59.388 52.381 0.00 0.00 43.37 3.85
135 136 2.584236 GATGCTTGATGCTTGATCCCT 58.416 47.619 0.00 0.00 43.37 4.20
136 137 2.048444 TGCTTGATGCTTGATCCCTC 57.952 50.000 0.00 0.00 43.37 4.30
160 161 3.700038 CCTCGAATACAGTACCTCCACTT 59.300 47.826 0.00 0.00 0.00 3.16
179 180 0.178975 TCCCATCACCACCAACCAAC 60.179 55.000 0.00 0.00 0.00 3.77
202 203 5.102953 TGCTAACAGAGTGCTAAATCCAT 57.897 39.130 0.00 0.00 0.00 3.41
207 208 1.777272 AGAGTGCTAAATCCATCCCCC 59.223 52.381 0.00 0.00 0.00 5.40
222 223 1.850345 TCCCCCAAGACCATCATTACC 59.150 52.381 0.00 0.00 0.00 2.85
223 224 1.476833 CCCCCAAGACCATCATTACCG 60.477 57.143 0.00 0.00 0.00 4.02
224 225 1.488812 CCCCAAGACCATCATTACCGA 59.511 52.381 0.00 0.00 0.00 4.69
238 239 8.088365 CCATCATTACCGAAGACAAGTATATGA 58.912 37.037 0.00 0.00 0.00 2.15
293 294 2.544267 GACACAGTTTAGCAGTGACACC 59.456 50.000 0.84 0.00 37.91 4.16
295 296 1.768870 ACAGTTTAGCAGTGACACCCT 59.231 47.619 0.84 1.78 0.00 4.34
296 297 2.224305 ACAGTTTAGCAGTGACACCCTC 60.224 50.000 0.84 0.00 0.00 4.30
323 329 4.132122 ACCCAATGATTTCAAAGTCCCT 57.868 40.909 0.00 0.00 0.00 4.20
337 343 3.680777 AGTCCCTTCCAAAAACAGGAA 57.319 42.857 0.00 0.00 42.62 3.36
347 353 6.739331 TCCAAAAACAGGAAACCACATAAT 57.261 33.333 0.00 0.00 30.71 1.28
350 356 8.875168 TCCAAAAACAGGAAACCACATAATAAT 58.125 29.630 0.00 0.00 30.71 1.28
377 392 8.956533 ATAATAAGAAGAAAAGAGGCAGAGAC 57.043 34.615 0.00 0.00 0.00 3.36
378 393 4.696479 AAGAAGAAAAGAGGCAGAGACA 57.304 40.909 0.00 0.00 0.00 3.41
379 394 4.696479 AGAAGAAAAGAGGCAGAGACAA 57.304 40.909 0.00 0.00 0.00 3.18
380 395 5.041191 AGAAGAAAAGAGGCAGAGACAAA 57.959 39.130 0.00 0.00 0.00 2.83
383 398 4.133078 AGAAAAGAGGCAGAGACAAAGTG 58.867 43.478 0.00 0.00 0.00 3.16
384 399 3.845781 AAAGAGGCAGAGACAAAGTGA 57.154 42.857 0.00 0.00 0.00 3.41
385 400 3.845781 AAGAGGCAGAGACAAAGTGAA 57.154 42.857 0.00 0.00 0.00 3.18
450 465 1.039856 AATCAAGCCACGCCAAAAGT 58.960 45.000 0.00 0.00 0.00 2.66
456 471 1.228124 CCACGCCAAAAGTCTCCCA 60.228 57.895 0.00 0.00 0.00 4.37
460 475 1.339151 ACGCCAAAAGTCTCCCATCTC 60.339 52.381 0.00 0.00 0.00 2.75
475 490 4.670247 TCCCATCTCCCTCTCTTATCTACA 59.330 45.833 0.00 0.00 0.00 2.74
487 502 7.918562 CCTCTCTTATCTACACTTCTTTAGCAC 59.081 40.741 0.00 0.00 0.00 4.40
509 524 3.493350 CCTCCCATCATCTACCGTTTCTG 60.493 52.174 0.00 0.00 0.00 3.02
534 549 0.329596 ACTTCCCCTGCTTGATCCAC 59.670 55.000 0.00 0.00 0.00 4.02
562 577 1.821936 CCTTGCAAGGCAACACCAA 59.178 52.632 31.70 0.00 43.99 3.67
564 579 1.202675 CCTTGCAAGGCAACACCAATT 60.203 47.619 31.70 0.00 43.99 2.32
646 661 3.923827 AATGCAACAAAAGCGTGAAAC 57.076 38.095 0.00 0.00 33.85 2.78
649 664 1.470805 GCAACAAAAGCGTGAAACCCT 60.471 47.619 0.00 0.00 0.00 4.34
650 665 2.223618 GCAACAAAAGCGTGAAACCCTA 60.224 45.455 0.00 0.00 0.00 3.53
652 667 4.616953 CAACAAAAGCGTGAAACCCTAAT 58.383 39.130 0.00 0.00 0.00 1.73
653 668 4.499037 ACAAAAGCGTGAAACCCTAATC 57.501 40.909 0.00 0.00 0.00 1.75
656 671 0.107848 AGCGTGAAACCCTAATCCCG 60.108 55.000 0.00 0.00 0.00 5.14
657 672 1.712018 GCGTGAAACCCTAATCCCGC 61.712 60.000 0.00 0.00 0.00 6.13
659 674 0.750546 GTGAAACCCTAATCCCGCCC 60.751 60.000 0.00 0.00 0.00 6.13
660 675 1.208844 TGAAACCCTAATCCCGCCCA 61.209 55.000 0.00 0.00 0.00 5.36
661 676 0.033894 GAAACCCTAATCCCGCCCAA 60.034 55.000 0.00 0.00 0.00 4.12
667 682 0.254747 CTAATCCCGCCCAACCAAGA 59.745 55.000 0.00 0.00 0.00 3.02
677 692 0.969149 CCAACCAAGAGGGAAAAGGC 59.031 55.000 0.00 0.00 41.15 4.35
680 695 1.074951 CCAAGAGGGAAAAGGCGGT 59.925 57.895 0.00 0.00 40.01 5.68
690 705 3.991773 GGGAAAAGGCGGTGTTTATTTTC 59.008 43.478 0.00 0.00 38.52 2.29
693 708 1.170442 AGGCGGTGTTTATTTTCGGG 58.830 50.000 0.00 0.00 0.00 5.14
701 716 4.055360 GTGTTTATTTTCGGGCTGCTTTT 58.945 39.130 0.00 0.00 0.00 2.27
710 725 1.726248 CGGGCTGCTTTTAATTTGCAC 59.274 47.619 0.00 0.00 32.91 4.57
806 829 9.768215 ATTTATAGATAGGAGAGAGAAAGAGGG 57.232 37.037 0.00 0.00 0.00 4.30
811 834 1.691163 GGAGAGAGAAAGAGGGAGGGG 60.691 61.905 0.00 0.00 0.00 4.79
813 836 0.340208 GAGAGAAAGAGGGAGGGGGA 59.660 60.000 0.00 0.00 0.00 4.81
815 838 0.340208 GAGAAAGAGGGAGGGGGAGA 59.660 60.000 0.00 0.00 0.00 3.71
836 859 3.197983 AGAGAGAGAAAGAGGAGGGAGA 58.802 50.000 0.00 0.00 0.00 3.71
837 860 3.596046 AGAGAGAGAAAGAGGAGGGAGAA 59.404 47.826 0.00 0.00 0.00 2.87
839 862 3.336694 AGAGAGAAAGAGGAGGGAGAAGT 59.663 47.826 0.00 0.00 0.00 3.01
842 865 3.958147 GAGAAAGAGGAGGGAGAAGTAGG 59.042 52.174 0.00 0.00 0.00 3.18
845 868 1.856920 AGAGGAGGGAGAAGTAGGAGG 59.143 57.143 0.00 0.00 0.00 4.30
846 869 0.263468 AGGAGGGAGAAGTAGGAGGC 59.737 60.000 0.00 0.00 0.00 4.70
847 870 0.032017 GGAGGGAGAAGTAGGAGGCA 60.032 60.000 0.00 0.00 0.00 4.75
849 872 0.689412 AGGGAGAAGTAGGAGGCAGC 60.689 60.000 0.00 0.00 0.00 5.25
850 873 0.978146 GGGAGAAGTAGGAGGCAGCA 60.978 60.000 0.00 0.00 0.00 4.41
851 874 0.463620 GGAGAAGTAGGAGGCAGCAG 59.536 60.000 0.00 0.00 0.00 4.24
852 875 0.179086 GAGAAGTAGGAGGCAGCAGC 60.179 60.000 0.00 0.00 41.10 5.25
855 878 2.513435 GTAGGAGGCAGCAGCAGC 60.513 66.667 2.65 0.00 44.61 5.25
856 879 3.004946 TAGGAGGCAGCAGCAGCA 61.005 61.111 12.41 0.00 45.49 4.41
857 880 3.320879 TAGGAGGCAGCAGCAGCAC 62.321 63.158 12.41 5.00 45.49 4.40
883 914 4.365505 GCCGAGCCGAGCTATCCC 62.366 72.222 0.00 0.00 39.88 3.85
892 942 0.965439 CGAGCTATCCCTTCCCTCAG 59.035 60.000 0.00 0.00 0.00 3.35
904 954 0.633378 TCCCTCAGCTCTCAGATCCA 59.367 55.000 0.00 0.00 0.00 3.41
911 961 1.012841 GCTCTCAGATCCAAAAGCCG 58.987 55.000 0.00 0.00 0.00 5.52
926 976 2.202743 CCGAAGAGAATCGCGCCA 60.203 61.111 0.00 0.00 42.67 5.69
927 977 1.809619 CCGAAGAGAATCGCGCCAA 60.810 57.895 0.00 0.00 42.67 4.52
928 978 1.345176 CGAAGAGAATCGCGCCAAC 59.655 57.895 0.00 0.00 42.67 3.77
929 979 1.078759 CGAAGAGAATCGCGCCAACT 61.079 55.000 0.00 0.00 42.67 3.16
930 980 0.647925 GAAGAGAATCGCGCCAACTC 59.352 55.000 0.00 7.74 42.67 3.01
931 981 1.078759 AAGAGAATCGCGCCAACTCG 61.079 55.000 0.00 0.00 42.67 4.18
977 1039 2.103042 CCGCAGGCTGCTACTGTTC 61.103 63.158 34.17 6.18 46.14 3.18
1056 1118 2.366570 GCCTCCTCCTCCTCCACT 59.633 66.667 0.00 0.00 0.00 4.00
1089 1151 4.629523 GCCGGGGTGGTGAACGAA 62.630 66.667 2.18 0.00 41.21 3.85
1092 1154 0.891904 CCGGGGTGGTGAACGAATTT 60.892 55.000 0.00 0.00 0.00 1.82
1106 1169 1.501169 GAATTTGGTGCGCTTTTGCT 58.499 45.000 9.73 0.00 44.80 3.91
1109 1172 2.641439 TTTGGTGCGCTTTTGCTGGG 62.641 55.000 9.73 0.00 44.80 4.45
1132 1195 1.372087 CCTGGGAGCGTTTGATCTGC 61.372 60.000 0.00 0.00 0.00 4.26
1170 1233 1.674764 TTGTTGGGTTGCTGGTGCTG 61.675 55.000 0.00 0.00 40.48 4.41
1171 1234 3.225798 TTGGGTTGCTGGTGCTGC 61.226 61.111 0.00 0.00 40.48 5.25
1175 1238 3.677648 GTTGCTGGTGCTGCCCTG 61.678 66.667 0.00 3.56 40.48 4.45
1176 1239 4.980702 TTGCTGGTGCTGCCCTGG 62.981 66.667 13.11 0.00 40.48 4.45
1178 1241 4.033776 GCTGGTGCTGCCCTGGTA 62.034 66.667 13.11 0.00 36.04 3.25
1179 1242 2.270205 CTGGTGCTGCCCTGGTAG 59.730 66.667 0.00 0.00 36.04 3.18
1180 1243 2.203922 TGGTGCTGCCCTGGTAGA 60.204 61.111 5.38 0.00 36.04 2.59
1181 1244 1.616327 TGGTGCTGCCCTGGTAGAT 60.616 57.895 5.38 0.00 36.04 1.98
1182 1245 1.207488 TGGTGCTGCCCTGGTAGATT 61.207 55.000 5.38 0.00 36.04 2.40
1183 1246 0.034089 GGTGCTGCCCTGGTAGATTT 60.034 55.000 5.38 0.00 0.00 2.17
1184 1247 1.098050 GTGCTGCCCTGGTAGATTTG 58.902 55.000 5.38 0.00 0.00 2.32
1185 1248 0.034186 TGCTGCCCTGGTAGATTTGG 60.034 55.000 5.38 0.00 0.00 3.28
1186 1249 0.034089 GCTGCCCTGGTAGATTTGGT 60.034 55.000 5.38 0.00 0.00 3.67
1187 1250 1.755179 CTGCCCTGGTAGATTTGGTG 58.245 55.000 0.00 0.00 0.00 4.17
1188 1251 0.323360 TGCCCTGGTAGATTTGGTGC 60.323 55.000 0.00 0.00 0.00 5.01
1189 1252 0.034089 GCCCTGGTAGATTTGGTGCT 60.034 55.000 0.00 0.00 0.00 4.40
1190 1253 2.019156 GCCCTGGTAGATTTGGTGCTC 61.019 57.143 0.00 0.00 0.00 4.26
1191 1254 1.656652 CCTGGTAGATTTGGTGCTCG 58.343 55.000 0.00 0.00 0.00 5.03
1192 1255 1.207089 CCTGGTAGATTTGGTGCTCGA 59.793 52.381 0.00 0.00 0.00 4.04
1193 1256 2.544685 CTGGTAGATTTGGTGCTCGAG 58.455 52.381 8.45 8.45 0.00 4.04
1194 1257 1.291132 GGTAGATTTGGTGCTCGAGC 58.709 55.000 30.42 30.42 42.50 5.03
1231 1294 1.446907 CTTCTGGTGCGAATCTTGCT 58.553 50.000 0.00 0.00 0.00 3.91
1233 1296 1.442769 TCTGGTGCGAATCTTGCTTC 58.557 50.000 0.00 0.00 0.00 3.86
1234 1297 1.002430 TCTGGTGCGAATCTTGCTTCT 59.998 47.619 0.00 0.00 0.00 2.85
1235 1298 1.396301 CTGGTGCGAATCTTGCTTCTC 59.604 52.381 0.00 0.00 0.00 2.87
1243 1306 1.267574 ATCTTGCTTCTCCCAGCGGA 61.268 55.000 0.00 0.00 43.37 5.54
1261 1344 0.876342 GAGAATTACCCGGCGAGCTG 60.876 60.000 9.30 0.00 0.00 4.24
1272 1355 1.160137 GGCGAGCTGAAGACATGTTT 58.840 50.000 0.00 0.00 0.00 2.83
1273 1356 1.537202 GGCGAGCTGAAGACATGTTTT 59.463 47.619 0.00 0.00 0.00 2.43
1299 1382 2.151202 TGTTCGCTTGATTGGTCTTCC 58.849 47.619 0.00 0.00 0.00 3.46
1313 1396 1.200948 GTCTTCCCATGCTGTTCTTGC 59.799 52.381 0.00 0.00 0.00 4.01
1314 1397 0.529378 CTTCCCATGCTGTTCTTGCC 59.471 55.000 0.00 0.00 0.00 4.52
1315 1398 0.112995 TTCCCATGCTGTTCTTGCCT 59.887 50.000 0.00 0.00 0.00 4.75
1316 1399 0.322816 TCCCATGCTGTTCTTGCCTC 60.323 55.000 0.00 0.00 0.00 4.70
1317 1400 0.323178 CCCATGCTGTTCTTGCCTCT 60.323 55.000 0.00 0.00 0.00 3.69
1318 1401 0.809385 CCATGCTGTTCTTGCCTCTG 59.191 55.000 0.00 0.00 0.00 3.35
1319 1402 1.531423 CATGCTGTTCTTGCCTCTGT 58.469 50.000 0.00 0.00 0.00 3.41
1320 1403 1.884579 CATGCTGTTCTTGCCTCTGTT 59.115 47.619 0.00 0.00 0.00 3.16
1321 1404 1.597742 TGCTGTTCTTGCCTCTGTTC 58.402 50.000 0.00 0.00 0.00 3.18
1322 1405 1.141657 TGCTGTTCTTGCCTCTGTTCT 59.858 47.619 0.00 0.00 0.00 3.01
1323 1406 2.225467 GCTGTTCTTGCCTCTGTTCTT 58.775 47.619 0.00 0.00 0.00 2.52
1324 1407 2.225255 GCTGTTCTTGCCTCTGTTCTTC 59.775 50.000 0.00 0.00 0.00 2.87
1325 1408 2.478134 CTGTTCTTGCCTCTGTTCTTCG 59.522 50.000 0.00 0.00 0.00 3.79
1326 1409 2.158957 TGTTCTTGCCTCTGTTCTTCGT 60.159 45.455 0.00 0.00 0.00 3.85
1327 1410 3.069016 TGTTCTTGCCTCTGTTCTTCGTA 59.931 43.478 0.00 0.00 0.00 3.43
1328 1411 3.577649 TCTTGCCTCTGTTCTTCGTAG 57.422 47.619 0.00 0.00 0.00 3.51
1329 1412 2.891580 TCTTGCCTCTGTTCTTCGTAGT 59.108 45.455 0.00 0.00 0.00 2.73
1330 1413 3.321111 TCTTGCCTCTGTTCTTCGTAGTT 59.679 43.478 0.00 0.00 0.00 2.24
1331 1414 4.521639 TCTTGCCTCTGTTCTTCGTAGTTA 59.478 41.667 0.00 0.00 0.00 2.24
1360 1443 6.067217 AGCTTGTAATCTGGGTAAAGATGT 57.933 37.500 0.00 0.00 36.99 3.06
1374 1457 9.308000 TGGGTAAAGATGTTAATTTGATCTGTT 57.692 29.630 0.00 0.00 0.00 3.16
1554 1637 1.609320 GGTTGGAGAAGAGGTGCTGAC 60.609 57.143 0.00 0.00 0.00 3.51
1560 1643 1.228894 AAGAGGTGCTGACTCCGGA 60.229 57.895 2.93 2.93 35.58 5.14
1628 1712 4.061596 CCTTGTTTGTGTTGTGTTTTGGT 58.938 39.130 0.00 0.00 0.00 3.67
1652 1736 3.544684 TCATGCGTGCTTGATCCTATTT 58.455 40.909 0.00 0.00 0.00 1.40
1665 1749 0.813610 CCTATTTGATGGCGTGCGGA 60.814 55.000 0.00 0.00 0.00 5.54
1674 1758 2.371923 GGCGTGCGGATTTTGCAAC 61.372 57.895 0.00 0.00 45.23 4.17
1694 1778 5.568825 GCAACTTGGATGTTAGTAGTGGAGA 60.569 44.000 0.00 0.00 0.00 3.71
1703 1787 5.322754 TGTTAGTAGTGGAGAGTTAGTGCT 58.677 41.667 0.00 0.00 0.00 4.40
1714 1798 3.196685 AGAGTTAGTGCTGGAGGAATCAC 59.803 47.826 0.00 0.00 0.00 3.06
1728 1812 5.278022 GGAGGAATCACGAATAAATCCTTGC 60.278 44.000 0.00 0.00 37.42 4.01
1742 1826 4.122149 TTGCGGGCCTATGGGGTG 62.122 66.667 0.84 0.00 37.43 4.61
1744 1828 3.165685 GCGGGCCTATGGGGTGTA 61.166 66.667 0.84 0.00 37.43 2.90
1745 1829 2.526046 GCGGGCCTATGGGGTGTAT 61.526 63.158 0.84 0.00 37.43 2.29
1746 1830 1.677552 CGGGCCTATGGGGTGTATC 59.322 63.158 0.84 0.00 37.43 2.24
1810 1895 1.152922 TTTGGTGACCGGTGGGAAC 60.153 57.895 14.63 4.61 36.97 3.62
1816 1901 0.547075 TGACCGGTGGGAACTTTTGA 59.453 50.000 14.63 0.00 36.97 2.69
1831 1916 6.969473 GGAACTTTTGAGCTATCTTAATGTGC 59.031 38.462 0.00 0.00 0.00 4.57
1849 1934 2.735134 GTGCCGTCTAGTGAACGATTTT 59.265 45.455 4.17 0.00 0.00 1.82
1857 1942 6.525628 CGTCTAGTGAACGATTTTAGCACTTA 59.474 38.462 0.00 0.00 40.08 2.24
1917 2002 1.480789 TGCCTCGGATGTAGTAAGCA 58.519 50.000 0.00 0.00 0.00 3.91
1921 2006 3.797184 GCCTCGGATGTAGTAAGCAGAAG 60.797 52.174 0.00 0.00 0.00 2.85
1923 2008 4.142138 CCTCGGATGTAGTAAGCAGAAGTT 60.142 45.833 0.00 0.00 0.00 2.66
1924 2009 5.401531 TCGGATGTAGTAAGCAGAAGTTT 57.598 39.130 0.00 0.00 0.00 2.66
1940 2025 0.389025 GTTTTCTTGCACCCACCCTG 59.611 55.000 0.00 0.00 0.00 4.45
1973 2058 4.285260 GGTCAAGACTTTACACCCCTAGAA 59.715 45.833 2.13 0.00 0.00 2.10
2011 2096 9.575868 GATTATATGAGTAGCCTAGCCTATGTA 57.424 37.037 0.00 0.00 0.00 2.29
2079 2164 7.716799 ATTATGAGTAGGATTTTTGGTGCAA 57.283 32.000 0.00 0.00 0.00 4.08
2099 2184 5.532406 TGCAATTTGGATCCTAGCATACTTC 59.468 40.000 14.23 0.00 0.00 3.01
2103 2188 2.972713 TGGATCCTAGCATACTTCCACC 59.027 50.000 14.23 0.00 0.00 4.61
2126 2212 3.383185 TGTGTTGTTTGACCCCAGAATTC 59.617 43.478 0.00 0.00 0.00 2.17
2127 2213 3.383185 GTGTTGTTTGACCCCAGAATTCA 59.617 43.478 8.44 0.00 0.00 2.57
2140 2226 4.040217 CCCAGAATTCATTTGTTGGGTTCA 59.960 41.667 16.52 0.00 0.00 3.18
2147 2233 8.970859 AATTCATTTGTTGGGTTCAAACATAA 57.029 26.923 0.00 0.00 37.56 1.90
2176 2262 4.344679 TCTGCAACTTTGGGATCAACATTT 59.655 37.500 0.00 0.00 31.78 2.32
2323 2409 6.564686 CGTCGTTGATCTTGCAATGCTAATAT 60.565 38.462 6.82 0.00 35.32 1.28
2324 2410 6.794158 GTCGTTGATCTTGCAATGCTAATATC 59.206 38.462 6.82 5.84 35.32 1.63
2403 2490 3.118555 TGGGCATAGCGAGTTTAAGCTTA 60.119 43.478 0.86 0.86 44.15 3.09
2406 2493 4.458708 GCATAGCGAGTTTAAGCTTATGC 58.541 43.478 14.70 14.70 44.15 3.14
2526 2613 4.704540 TCGAGTTGATTGTAATGGGCAAAT 59.295 37.500 0.00 0.00 0.00 2.32
2530 2617 6.532826 AGTTGATTGTAATGGGCAAATTGTT 58.467 32.000 0.00 0.00 0.00 2.83
2537 2630 6.997655 TGTAATGGGCAAATTGTTCATGTAA 58.002 32.000 0.00 0.00 0.00 2.41
2561 2654 3.366052 AATTAGCCGTCAATCCCTGTT 57.634 42.857 0.00 0.00 0.00 3.16
2625 2719 6.180472 ACATGTGTATGCTTTTAGCTAACCT 58.820 36.000 5.45 0.00 42.97 3.50
2634 2728 3.695830 TTTAGCTAACCTGACACCCTG 57.304 47.619 5.45 0.00 0.00 4.45
2739 2834 5.394663 GCTGTTATTCTGACTCAAGCTCCTA 60.395 44.000 0.00 0.00 0.00 2.94
2775 2870 6.154445 TGACAATCTAAGTAACTTGTCGGAC 58.846 40.000 0.00 0.00 46.57 4.79
2819 2914 6.996282 ACTTTTGCTAAGGTTTGCTACTCTTA 59.004 34.615 4.55 0.00 0.00 2.10
2917 3012 8.902806 CACATATGTTTTTGGGATACACAGTAT 58.097 33.333 5.37 0.00 39.74 2.12
2918 3013 9.474313 ACATATGTTTTTGGGATACACAGTATT 57.526 29.630 1.41 0.00 39.74 1.89
2919 3014 9.950680 CATATGTTTTTGGGATACACAGTATTC 57.049 33.333 0.00 0.00 39.74 1.75
2951 3046 9.339492 CAGATTCTTCTTGAATTAGCAACTTTC 57.661 33.333 0.00 0.00 44.70 2.62
2959 3054 4.826733 TGAATTAGCAACTTTCTGAAGCCA 59.173 37.500 0.00 0.00 36.29 4.75
3065 3160 6.887376 TGATTATCTGAACTTAGTGAACGC 57.113 37.500 0.00 0.00 0.00 4.84
3086 3181 8.893219 AACGCAGATAGATTATTGATTCTGAA 57.107 30.769 0.00 0.00 34.00 3.02
3132 3236 1.217689 CCCATGAAAGGCCCTATTGGA 59.782 52.381 0.00 0.00 35.39 3.53
3151 3255 9.823647 CTATTGGACATAAAAGATGTAGACACT 57.176 33.333 0.00 0.00 31.52 3.55
3196 3300 6.431543 TCGCTTTGGAGTAATATTTTGGTCAA 59.568 34.615 0.00 0.00 0.00 3.18
3207 3311 3.591196 TTTTGGTCAATGGCTATGCAC 57.409 42.857 0.00 0.00 0.00 4.57
3221 3325 4.938226 GGCTATGCACCTTAGGATTATGTC 59.062 45.833 4.77 0.00 0.00 3.06
3222 3326 5.280215 GGCTATGCACCTTAGGATTATGTCT 60.280 44.000 4.77 0.00 0.00 3.41
3223 3327 5.641209 GCTATGCACCTTAGGATTATGTCTG 59.359 44.000 4.77 0.00 0.00 3.51
3227 3331 5.186198 GCACCTTAGGATTATGTCTGTTGT 58.814 41.667 4.77 0.00 0.00 3.32
3235 3339 4.142600 GGATTATGTCTGTTGTGCCTTCAC 60.143 45.833 0.00 0.00 43.40 3.18
3238 3342 1.064758 TGTCTGTTGTGCCTTCACCTT 60.065 47.619 0.00 0.00 42.46 3.50
3239 3343 1.604278 GTCTGTTGTGCCTTCACCTTC 59.396 52.381 0.00 0.00 42.46 3.46
3301 3405 7.544566 GTGTTCATAGTAGCTGCTTGTTTACTA 59.455 37.037 10.41 9.60 34.26 1.82
3438 3545 6.534634 AGGAAGTAAGTTGACATTGCTACTT 58.465 36.000 10.63 10.63 37.54 2.24
3442 3549 9.595357 GAAGTAAGTTGACATTGCTACTTTTAC 57.405 33.333 10.92 6.68 35.85 2.01
3449 3556 7.197071 TGACATTGCTACTTTTACGACAAAT 57.803 32.000 0.00 0.00 0.00 2.32
3458 3565 8.277713 GCTACTTTTACGACAAATTAACACTGA 58.722 33.333 0.00 0.00 0.00 3.41
3480 3587 9.672673 ACTGATGTTTAATAGTGTGAAGCTTAT 57.327 29.630 0.00 0.00 0.00 1.73
3492 3599 7.688372 AGTGTGAAGCTTATTTGTGATATTCG 58.312 34.615 0.00 0.00 0.00 3.34
3552 3659 7.930217 TGGTTGTTTAAGAATCTTCAAGTCAG 58.070 34.615 0.00 0.00 0.00 3.51
3566 3673 3.136763 CAAGTCAGTCTTCACAGCATGT 58.863 45.455 0.00 0.00 42.44 3.21
3613 3720 2.603173 CGCTTCAACTGTTTTGCCTCTC 60.603 50.000 0.00 0.00 0.00 3.20
3615 3722 3.793465 GCTTCAACTGTTTTGCCTCTCAC 60.793 47.826 0.00 0.00 0.00 3.51
3823 3932 9.885743 GCACATATTTTCGAAATTTAATGTCAC 57.114 29.630 12.12 9.31 0.00 3.67
3845 3954 4.101741 ACCAGTATTATCAGGAAGAGTGGC 59.898 45.833 4.88 0.00 42.50 5.01
3846 3955 4.302455 CAGTATTATCAGGAAGAGTGGCG 58.698 47.826 0.00 0.00 0.00 5.69
3887 3996 6.706055 GGTTGGAAAGCAACTATTTTAAGC 57.294 37.500 0.00 0.00 45.31 3.09
3891 4000 8.773645 GTTGGAAAGCAACTATTTTAAGCAAAT 58.226 29.630 0.00 0.00 38.69 2.32
3907 4016 2.743664 GCAAATTTCAATCCCTTGTGGC 59.256 45.455 0.00 0.00 33.87 5.01
3930 4039 8.822805 TGGCCTCGAATTTAGGTTCTTATATAT 58.177 33.333 3.32 0.00 36.43 0.86
3943 4052 9.213777 AGGTTCTTATATATTGTTCTGTCAGGA 57.786 33.333 0.00 0.00 0.00 3.86
4010 4119 7.011669 GTCAATTTTATGCCCCAAGATTCAATG 59.988 37.037 0.00 0.00 0.00 2.82
4077 4186 4.532126 ACTGTTGATTGGACTGAGGATGTA 59.468 41.667 0.00 0.00 0.00 2.29
4095 4204 7.872138 AGGATGTAGAGTTTCCCAATTATCAA 58.128 34.615 0.00 0.00 0.00 2.57
4162 4271 4.083110 GGTCATCACAGTCACATTCTTTGG 60.083 45.833 0.00 0.00 0.00 3.28
4178 4287 2.674380 GGTGCAGCAAGGGGACAG 60.674 66.667 11.86 0.00 0.00 3.51
4182 4291 2.202395 GCAGCAAGGGGACAGCAAA 61.202 57.895 0.00 0.00 36.26 3.68
4186 4295 2.597510 AAGGGGACAGCAAACCGC 60.598 61.111 0.00 0.00 42.91 5.68
4269 4378 1.071857 GGACCAAAGTCTCCTCCGTTT 59.928 52.381 0.00 0.00 43.05 3.60
4474 4583 5.227569 TGGTGGTCCTAATATGCATGTAG 57.772 43.478 10.16 10.54 34.23 2.74
4551 4660 5.646360 GCACCTTAATCTACTGCCAAACTTA 59.354 40.000 0.00 0.00 0.00 2.24
4650 4759 0.625316 TCCAACCATCCCACCATCAG 59.375 55.000 0.00 0.00 0.00 2.90
4881 4990 6.700960 CCAAGTACATGTCATCTGAAGAGATC 59.299 42.308 0.00 0.00 36.75 2.75
5047 5156 3.961408 GCCCTCCAAGTCTAGATCAAGTA 59.039 47.826 0.00 0.00 0.00 2.24
5178 5287 4.358851 GTCCTCATGATCAGAAGTCTTCG 58.641 47.826 6.94 2.98 34.02 3.79
5301 5410 0.835941 CTAGCCAGGCACAGGAGAAT 59.164 55.000 15.80 0.00 37.04 2.40
5307 5416 2.356535 CCAGGCACAGGAGAATAGCTTT 60.357 50.000 0.00 0.00 37.04 3.51
5676 5785 2.257676 GCTTGCCTTGCTGCAGTC 59.742 61.111 16.64 8.39 43.21 3.51
5952 6061 2.842496 TGTGATTGGATCTGAAGCCTCT 59.158 45.455 0.00 0.00 0.00 3.69
5959 6068 2.278854 GATCTGAAGCCTCTCAAGCAC 58.721 52.381 0.00 0.00 0.00 4.40
6146 6255 1.793414 TATAGCTCAAGGCCTCTGCA 58.207 50.000 21.39 11.21 43.05 4.41
6166 6275 3.825308 CACAATTGTCTTCGGAATGGTG 58.175 45.455 8.48 0.00 29.34 4.17
6196 6305 8.877808 TTATATATCCGAAGACATGCATGATC 57.122 34.615 32.75 23.42 0.00 2.92
6197 6306 2.985957 TCCGAAGACATGCATGATCA 57.014 45.000 32.75 10.02 0.00 2.92
6357 6471 4.102681 GGGTCATTTACTATAGCACACCCT 59.897 45.833 0.00 0.00 38.36 4.34
6371 6485 1.836166 ACACCCTCCTGATGATCACAG 59.164 52.381 14.68 14.68 35.43 3.66
6379 6493 4.808042 TCCTGATGATCACAGATAGACCA 58.192 43.478 20.26 0.81 37.54 4.02
6386 6501 5.211201 TGATCACAGATAGACCATGGAGAA 58.789 41.667 21.47 2.60 0.00 2.87
6632 6752 5.122707 TGGAATAATGATGGGTAAGTGCA 57.877 39.130 0.00 0.00 0.00 4.57
6721 6842 5.785423 CCTCCCAGGTATCCACTGATATTAA 59.215 44.000 0.00 0.00 38.20 1.40
6937 7077 4.316823 AGAGGCCACCCTGTCCGA 62.317 66.667 5.01 0.00 43.12 4.55
6938 7078 3.083997 GAGGCCACCCTGTCCGAT 61.084 66.667 5.01 0.00 43.12 4.18
7028 7185 4.271696 TCATCATGGTCTTGAACTCGTT 57.728 40.909 0.00 0.00 0.00 3.85
7032 7189 4.447290 TCATGGTCTTGAACTCGTTGAAA 58.553 39.130 0.00 0.00 0.00 2.69
7048 7205 2.710724 GAAAGTGAGCACCCCGTCGT 62.711 60.000 0.00 0.00 0.00 4.34
7087 7282 0.894141 ATCATAGCCTAGCCTGCTCG 59.106 55.000 0.00 0.00 40.23 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.928167 TGAGAATGATACTCAACGATGCTTATT 59.072 33.333 0.00 0.00 40.70 1.40
1 2 7.383572 GTGAGAATGATACTCAACGATGCTTAT 59.616 37.037 0.00 0.00 44.29 1.73
2 3 6.697455 GTGAGAATGATACTCAACGATGCTTA 59.303 38.462 0.00 0.00 44.29 3.09
3 4 5.521735 GTGAGAATGATACTCAACGATGCTT 59.478 40.000 0.00 0.00 44.29 3.91
4 5 5.046529 GTGAGAATGATACTCAACGATGCT 58.953 41.667 0.00 0.00 44.29 3.79
5 6 5.046529 AGTGAGAATGATACTCAACGATGC 58.953 41.667 0.00 0.00 44.29 3.91
6 7 7.531280 AAAGTGAGAATGATACTCAACGATG 57.469 36.000 0.00 0.00 44.29 3.84
7 8 9.653287 TTTAAAGTGAGAATGATACTCAACGAT 57.347 29.630 0.00 0.00 44.29 3.73
8 9 9.483916 TTTTAAAGTGAGAATGATACTCAACGA 57.516 29.630 0.00 0.00 44.29 3.85
9 10 9.530129 GTTTTAAAGTGAGAATGATACTCAACG 57.470 33.333 0.00 0.00 44.29 4.10
10 11 9.530129 CGTTTTAAAGTGAGAATGATACTCAAC 57.470 33.333 0.00 0.00 44.29 3.18
11 12 8.717821 CCGTTTTAAAGTGAGAATGATACTCAA 58.282 33.333 0.00 0.00 44.29 3.02
12 13 8.092068 TCCGTTTTAAAGTGAGAATGATACTCA 58.908 33.333 0.00 0.00 41.26 3.41
13 14 8.475331 TCCGTTTTAAAGTGAGAATGATACTC 57.525 34.615 0.00 0.00 35.26 2.59
14 15 7.549488 CCTCCGTTTTAAAGTGAGAATGATACT 59.451 37.037 10.55 0.00 0.00 2.12
15 16 7.548075 TCCTCCGTTTTAAAGTGAGAATGATAC 59.452 37.037 10.55 0.00 0.00 2.24
16 17 7.617225 TCCTCCGTTTTAAAGTGAGAATGATA 58.383 34.615 10.55 0.00 0.00 2.15
17 18 6.472887 TCCTCCGTTTTAAAGTGAGAATGAT 58.527 36.000 10.55 0.00 0.00 2.45
18 19 5.860611 TCCTCCGTTTTAAAGTGAGAATGA 58.139 37.500 10.55 0.91 0.00 2.57
19 20 5.122396 CCTCCTCCGTTTTAAAGTGAGAATG 59.878 44.000 10.55 3.40 0.00 2.67
20 21 5.221864 ACCTCCTCCGTTTTAAAGTGAGAAT 60.222 40.000 10.55 0.00 0.00 2.40
21 22 4.102054 ACCTCCTCCGTTTTAAAGTGAGAA 59.898 41.667 10.55 0.00 0.00 2.87
22 23 3.644738 ACCTCCTCCGTTTTAAAGTGAGA 59.355 43.478 10.55 0.00 0.00 3.27
23 24 4.004196 ACCTCCTCCGTTTTAAAGTGAG 57.996 45.455 0.00 0.00 0.00 3.51
24 25 5.163322 TGTTACCTCCTCCGTTTTAAAGTGA 60.163 40.000 0.00 0.00 0.00 3.41
25 26 5.058490 TGTTACCTCCTCCGTTTTAAAGTG 58.942 41.667 0.00 0.00 0.00 3.16
42 43 6.535508 TGCTTTGTTTACACCAAAATGTTACC 59.464 34.615 0.00 0.00 33.85 2.85
54 55 2.159310 TGGTGTGCTGCTTTGTTTACAC 60.159 45.455 0.00 4.93 38.08 2.90
125 126 1.338136 TTCGAGGGGAGGGATCAAGC 61.338 60.000 0.00 0.00 0.00 4.01
127 128 2.326428 GTATTCGAGGGGAGGGATCAA 58.674 52.381 0.00 0.00 0.00 2.57
129 130 1.896465 CTGTATTCGAGGGGAGGGATC 59.104 57.143 0.00 0.00 0.00 3.36
130 131 1.220750 ACTGTATTCGAGGGGAGGGAT 59.779 52.381 0.00 0.00 0.00 3.85
131 132 0.635009 ACTGTATTCGAGGGGAGGGA 59.365 55.000 0.00 0.00 0.00 4.20
132 133 1.962100 GTACTGTATTCGAGGGGAGGG 59.038 57.143 0.00 0.00 0.00 4.30
133 134 1.962100 GGTACTGTATTCGAGGGGAGG 59.038 57.143 0.00 0.00 0.00 4.30
134 135 2.885894 GAGGTACTGTATTCGAGGGGAG 59.114 54.545 0.00 0.00 41.55 4.30
135 136 2.423947 GGAGGTACTGTATTCGAGGGGA 60.424 54.545 0.00 0.00 41.55 4.81
136 137 1.962100 GGAGGTACTGTATTCGAGGGG 59.038 57.143 0.00 0.00 41.55 4.79
160 161 0.178975 GTTGGTTGGTGGTGATGGGA 60.179 55.000 0.00 0.00 0.00 4.37
179 180 4.507710 TGGATTTAGCACTCTGTTAGCAG 58.492 43.478 0.00 0.00 43.87 4.24
202 203 1.850345 GGTAATGATGGTCTTGGGGGA 59.150 52.381 0.00 0.00 0.00 4.81
207 208 4.503910 TGTCTTCGGTAATGATGGTCTTG 58.496 43.478 0.00 0.00 0.00 3.02
323 329 6.546428 TTATGTGGTTTCCTGTTTTTGGAA 57.454 33.333 0.00 0.00 41.33 3.53
352 358 8.543774 TGTCTCTGCCTCTTTTCTTCTTATTAT 58.456 33.333 0.00 0.00 0.00 1.28
353 359 7.907389 TGTCTCTGCCTCTTTTCTTCTTATTA 58.093 34.615 0.00 0.00 0.00 0.98
354 360 6.773638 TGTCTCTGCCTCTTTTCTTCTTATT 58.226 36.000 0.00 0.00 0.00 1.40
356 362 5.808366 TGTCTCTGCCTCTTTTCTTCTTA 57.192 39.130 0.00 0.00 0.00 2.10
362 377 4.130118 TCACTTTGTCTCTGCCTCTTTTC 58.870 43.478 0.00 0.00 0.00 2.29
363 378 4.156455 TCACTTTGTCTCTGCCTCTTTT 57.844 40.909 0.00 0.00 0.00 2.27
417 432 4.210331 GGCTTGATTGTTACTCCATCCAT 58.790 43.478 0.00 0.00 0.00 3.41
419 434 3.378427 GTGGCTTGATTGTTACTCCATCC 59.622 47.826 0.00 0.00 0.00 3.51
423 438 1.130561 GCGTGGCTTGATTGTTACTCC 59.869 52.381 0.00 0.00 0.00 3.85
450 465 3.993692 AGATAAGAGAGGGAGATGGGAGA 59.006 47.826 0.00 0.00 0.00 3.71
456 471 7.161715 AGAAGTGTAGATAAGAGAGGGAGAT 57.838 40.000 0.00 0.00 0.00 2.75
460 475 7.068839 TGCTAAAGAAGTGTAGATAAGAGAGGG 59.931 40.741 0.00 0.00 0.00 4.30
475 490 2.912956 TGATGGGAGGTGCTAAAGAAGT 59.087 45.455 0.00 0.00 0.00 3.01
487 502 2.700897 AGAAACGGTAGATGATGGGAGG 59.299 50.000 0.00 0.00 0.00 4.30
509 524 1.556911 TCAAGCAGGGGAAGTGAGATC 59.443 52.381 0.00 0.00 0.00 2.75
534 549 0.249155 CCTTGCAAGGCACACAACAG 60.249 55.000 31.70 5.10 38.71 3.16
617 632 9.411801 TCACGCTTTTGTTGCATTAATTAATTA 57.588 25.926 8.01 3.71 0.00 1.40
618 633 8.304202 TCACGCTTTTGTTGCATTAATTAATT 57.696 26.923 8.01 5.89 0.00 1.40
619 634 7.881643 TCACGCTTTTGTTGCATTAATTAAT 57.118 28.000 4.81 4.81 0.00 1.40
620 635 7.700322 TTCACGCTTTTGTTGCATTAATTAA 57.300 28.000 0.00 0.00 0.00 1.40
638 653 2.390427 CGGGATTAGGGTTTCACGC 58.610 57.895 0.00 0.00 31.26 5.34
639 654 1.093496 GGCGGGATTAGGGTTTCACG 61.093 60.000 0.00 0.00 41.61 4.35
646 661 2.194868 GGTTGGGCGGGATTAGGG 59.805 66.667 0.00 0.00 0.00 3.53
649 664 0.254747 CTCTTGGTTGGGCGGGATTA 59.745 55.000 0.00 0.00 0.00 1.75
650 665 1.000896 CTCTTGGTTGGGCGGGATT 60.001 57.895 0.00 0.00 0.00 3.01
652 667 3.646715 CCTCTTGGTTGGGCGGGA 61.647 66.667 0.00 0.00 0.00 5.14
653 668 4.740822 CCCTCTTGGTTGGGCGGG 62.741 72.222 0.00 0.00 36.61 6.13
656 671 0.969149 CTTTTCCCTCTTGGTTGGGC 59.031 55.000 0.00 0.00 43.04 5.36
657 672 1.632589 CCTTTTCCCTCTTGGTTGGG 58.367 55.000 0.00 0.00 44.66 4.12
659 674 0.598065 CGCCTTTTCCCTCTTGGTTG 59.402 55.000 0.00 0.00 34.77 3.77
660 675 0.539669 CCGCCTTTTCCCTCTTGGTT 60.540 55.000 0.00 0.00 34.77 3.67
661 676 1.074951 CCGCCTTTTCCCTCTTGGT 59.925 57.895 0.00 0.00 34.77 3.67
667 682 2.597578 ATAAACACCGCCTTTTCCCT 57.402 45.000 0.00 0.00 0.00 4.20
672 687 2.029739 CCCGAAAATAAACACCGCCTTT 60.030 45.455 0.00 0.00 0.00 3.11
677 692 1.731098 GCAGCCCGAAAATAAACACCG 60.731 52.381 0.00 0.00 0.00 4.94
680 695 4.329462 AAAAGCAGCCCGAAAATAAACA 57.671 36.364 0.00 0.00 0.00 2.83
690 705 1.726248 GTGCAAATTAAAAGCAGCCCG 59.274 47.619 0.00 0.00 39.21 6.13
693 708 1.126662 GGCGTGCAAATTAAAAGCAGC 59.873 47.619 0.00 6.58 39.21 5.25
701 716 5.406649 CAAAGAAATAGGGCGTGCAAATTA 58.593 37.500 0.00 0.00 0.00 1.40
710 725 1.025041 GCTCCCAAAGAAATAGGGCG 58.975 55.000 0.00 0.00 42.52 6.13
742 757 7.126061 GGGAATATATTTTGGGATAAGGAGGG 58.874 42.308 0.00 0.00 0.00 4.30
743 758 7.035838 AGGGGAATATATTTTGGGATAAGGAGG 60.036 40.741 0.00 0.00 0.00 4.30
744 759 7.944176 AGGGGAATATATTTTGGGATAAGGAG 58.056 38.462 0.00 0.00 0.00 3.69
745 760 7.921956 AGGGGAATATATTTTGGGATAAGGA 57.078 36.000 0.00 0.00 0.00 3.36
788 811 3.142028 CCCTCCCTCTTTCTCTCTCCTAT 59.858 52.174 0.00 0.00 0.00 2.57
789 812 2.516277 CCCTCCCTCTTTCTCTCTCCTA 59.484 54.545 0.00 0.00 0.00 2.94
805 828 0.930726 TTCTCTCTCTCTCCCCCTCC 59.069 60.000 0.00 0.00 0.00 4.30
806 829 2.243736 TCTTTCTCTCTCTCTCCCCCTC 59.756 54.545 0.00 0.00 0.00 4.30
811 834 3.555966 CCTCCTCTTTCTCTCTCTCTCC 58.444 54.545 0.00 0.00 0.00 3.71
813 836 3.197983 TCCCTCCTCTTTCTCTCTCTCT 58.802 50.000 0.00 0.00 0.00 3.10
815 838 3.197983 TCTCCCTCCTCTTTCTCTCTCT 58.802 50.000 0.00 0.00 0.00 3.10
836 859 1.601171 CTGCTGCTGCCTCCTACTT 59.399 57.895 13.47 0.00 38.71 2.24
837 860 3.028921 GCTGCTGCTGCCTCCTACT 62.029 63.158 19.30 0.00 38.71 2.57
839 862 3.004946 TGCTGCTGCTGCCTCCTA 61.005 61.111 25.44 6.71 40.48 2.94
883 914 1.688197 GGATCTGAGAGCTGAGGGAAG 59.312 57.143 0.00 0.00 0.00 3.46
892 942 1.012841 CGGCTTTTGGATCTGAGAGC 58.987 55.000 0.00 0.00 0.00 4.09
904 954 0.721718 CGCGATTCTCTTCGGCTTTT 59.278 50.000 0.00 0.00 39.49 2.27
911 961 0.647925 GAGTTGGCGCGATTCTCTTC 59.352 55.000 12.10 0.00 0.00 2.87
935 985 2.269529 ATCTAGCTACGGCGAGGGC 61.270 63.158 16.62 14.46 44.37 5.19
936 986 1.581954 CATCTAGCTACGGCGAGGG 59.418 63.158 16.62 3.84 44.37 4.30
937 987 1.081108 GCATCTAGCTACGGCGAGG 60.081 63.158 16.62 6.71 44.37 4.63
944 994 3.100191 CGGCGCGCATCTAGCTAC 61.100 66.667 34.42 10.96 42.61 3.58
963 1013 1.197430 AGCAGGAACAGTAGCAGCCT 61.197 55.000 0.00 0.00 0.00 4.58
977 1039 1.364626 CGCAGAAACCTAGCAGCAGG 61.365 60.000 8.82 8.82 41.87 4.85
1041 1103 1.305633 TGCAGTGGAGGAGGAGGAG 60.306 63.158 0.00 0.00 0.00 3.69
1077 1139 1.601914 GCACCAAATTCGTTCACCACC 60.602 52.381 0.00 0.00 0.00 4.61
1086 1148 0.161446 GCAAAAGCGCACCAAATTCG 59.839 50.000 11.47 0.00 0.00 3.34
1089 1151 0.600782 CCAGCAAAAGCGCACCAAAT 60.601 50.000 11.47 0.00 0.00 2.32
1092 1154 3.604667 CCCAGCAAAAGCGCACCA 61.605 61.111 11.47 0.00 0.00 4.17
1106 1169 2.002018 AAACGCTCCCAGGAAACCCA 62.002 55.000 0.00 0.00 0.00 4.51
1109 1172 1.468914 GATCAAACGCTCCCAGGAAAC 59.531 52.381 0.00 0.00 0.00 2.78
1132 1195 2.593436 ACCAACCAAACCGGCGAG 60.593 61.111 9.30 0.06 39.03 5.03
1170 1233 0.034089 AGCACCAAATCTACCAGGGC 60.034 55.000 0.00 0.00 0.00 5.19
1171 1234 1.743772 CGAGCACCAAATCTACCAGGG 60.744 57.143 0.00 0.00 0.00 4.45
1172 1235 1.207089 TCGAGCACCAAATCTACCAGG 59.793 52.381 0.00 0.00 0.00 4.45
1173 1236 2.544685 CTCGAGCACCAAATCTACCAG 58.455 52.381 0.00 0.00 0.00 4.00
1175 1238 1.291132 GCTCGAGCACCAAATCTACC 58.709 55.000 31.91 0.00 41.59 3.18
1176 1239 1.134670 AGGCTCGAGCACCAAATCTAC 60.135 52.381 36.27 16.29 44.36 2.59
1177 1240 1.134699 CAGGCTCGAGCACCAAATCTA 60.135 52.381 36.27 0.00 44.36 1.98
1178 1241 0.392193 CAGGCTCGAGCACCAAATCT 60.392 55.000 36.27 20.40 44.36 2.40
1179 1242 1.372087 CCAGGCTCGAGCACCAAATC 61.372 60.000 36.27 18.46 44.36 2.17
1180 1243 1.377725 CCAGGCTCGAGCACCAAAT 60.378 57.895 36.27 13.37 44.36 2.32
1181 1244 2.032528 CCAGGCTCGAGCACCAAA 59.967 61.111 36.27 0.00 44.36 3.28
1182 1245 4.704833 GCCAGGCTCGAGCACCAA 62.705 66.667 36.27 0.00 44.36 3.67
1234 1297 1.682451 CGGGTAATTCTCCGCTGGGA 61.682 60.000 6.48 0.00 39.78 4.37
1235 1298 1.227556 CGGGTAATTCTCCGCTGGG 60.228 63.158 6.48 0.00 39.78 4.45
1243 1306 1.144057 CAGCTCGCCGGGTAATTCT 59.856 57.895 2.18 0.00 0.00 2.40
1261 1344 6.691388 AGCGAACAAACTAAAAACATGTCTTC 59.309 34.615 0.00 0.00 0.00 2.87
1272 1355 5.298276 AGACCAATCAAGCGAACAAACTAAA 59.702 36.000 0.00 0.00 0.00 1.85
1273 1356 4.819630 AGACCAATCAAGCGAACAAACTAA 59.180 37.500 0.00 0.00 0.00 2.24
1299 1382 0.809385 CAGAGGCAAGAACAGCATGG 59.191 55.000 0.00 0.00 43.62 3.66
1313 1396 6.256912 AGAACTAACTACGAAGAACAGAGG 57.743 41.667 0.00 0.00 0.00 3.69
1314 1397 6.962678 GCTAGAACTAACTACGAAGAACAGAG 59.037 42.308 0.00 0.00 0.00 3.35
1315 1398 6.654161 AGCTAGAACTAACTACGAAGAACAGA 59.346 38.462 0.00 0.00 0.00 3.41
1316 1399 6.844254 AGCTAGAACTAACTACGAAGAACAG 58.156 40.000 0.00 0.00 0.00 3.16
1317 1400 6.814506 AGCTAGAACTAACTACGAAGAACA 57.185 37.500 0.00 0.00 0.00 3.18
1318 1401 7.083230 ACAAGCTAGAACTAACTACGAAGAAC 58.917 38.462 0.00 0.00 0.00 3.01
1319 1402 7.211966 ACAAGCTAGAACTAACTACGAAGAA 57.788 36.000 0.00 0.00 0.00 2.52
1320 1403 6.814506 ACAAGCTAGAACTAACTACGAAGA 57.185 37.500 0.00 0.00 0.00 2.87
1321 1404 9.224058 GATTACAAGCTAGAACTAACTACGAAG 57.776 37.037 0.00 0.00 0.00 3.79
1322 1405 8.954350 AGATTACAAGCTAGAACTAACTACGAA 58.046 33.333 0.00 0.00 0.00 3.85
1323 1406 8.396390 CAGATTACAAGCTAGAACTAACTACGA 58.604 37.037 0.00 0.00 0.00 3.43
1324 1407 7.644551 CCAGATTACAAGCTAGAACTAACTACG 59.355 40.741 0.00 0.00 0.00 3.51
1325 1408 7.921745 CCCAGATTACAAGCTAGAACTAACTAC 59.078 40.741 0.00 0.00 0.00 2.73
1326 1409 7.618512 ACCCAGATTACAAGCTAGAACTAACTA 59.381 37.037 0.00 0.00 0.00 2.24
1327 1410 6.440965 ACCCAGATTACAAGCTAGAACTAACT 59.559 38.462 0.00 0.00 0.00 2.24
1328 1411 6.641474 ACCCAGATTACAAGCTAGAACTAAC 58.359 40.000 0.00 0.00 0.00 2.34
1329 1412 6.869206 ACCCAGATTACAAGCTAGAACTAA 57.131 37.500 0.00 0.00 0.00 2.24
1330 1413 7.966339 TTACCCAGATTACAAGCTAGAACTA 57.034 36.000 0.00 0.00 0.00 2.24
1331 1414 6.869206 TTACCCAGATTACAAGCTAGAACT 57.131 37.500 0.00 0.00 0.00 3.01
1360 1443 7.596494 CAGCAAGGAAGAACAGATCAAATTAA 58.404 34.615 0.00 0.00 0.00 1.40
1374 1457 3.988976 AACTATCTGCAGCAAGGAAGA 57.011 42.857 9.47 0.00 0.00 2.87
1537 1620 1.261480 GAGTCAGCACCTCTTCTCCA 58.739 55.000 0.00 0.00 0.00 3.86
1560 1643 1.132495 AGGGTGTGGACTAGGAAGGTT 60.132 52.381 0.00 0.00 0.00 3.50
1601 1684 0.175531 ACAACACAAACAAGGCCAGC 59.824 50.000 5.01 0.00 0.00 4.85
1628 1712 1.065926 AGGATCAAGCACGCATGAGAA 60.066 47.619 2.50 0.00 0.00 2.87
1652 1736 1.505807 CAAAATCCGCACGCCATCA 59.494 52.632 0.00 0.00 0.00 3.07
1665 1749 7.370383 CACTACTAACATCCAAGTTGCAAAAT 58.630 34.615 0.00 0.00 33.07 1.82
1674 1758 5.923733 ACTCTCCACTACTAACATCCAAG 57.076 43.478 0.00 0.00 0.00 3.61
1694 1778 2.093973 CGTGATTCCTCCAGCACTAACT 60.094 50.000 0.00 0.00 0.00 2.24
1703 1787 5.630415 AGGATTTATTCGTGATTCCTCCA 57.370 39.130 0.00 0.00 0.00 3.86
1728 1812 0.836400 AGATACACCCCATAGGCCCG 60.836 60.000 0.00 0.00 40.58 6.13
1742 1826 5.296151 TGATCCTCATTTCCACCAGATAC 57.704 43.478 0.00 0.00 0.00 2.24
1743 1827 5.974156 TTGATCCTCATTTCCACCAGATA 57.026 39.130 0.00 0.00 0.00 1.98
1744 1828 4.868172 TTGATCCTCATTTCCACCAGAT 57.132 40.909 0.00 0.00 0.00 2.90
1745 1829 4.868172 ATTGATCCTCATTTCCACCAGA 57.132 40.909 0.00 0.00 0.00 3.86
1746 1830 4.951715 TGAATTGATCCTCATTTCCACCAG 59.048 41.667 8.48 0.00 36.47 4.00
1794 1879 1.637724 AAAGTTCCCACCGGTCACCA 61.638 55.000 2.59 0.00 0.00 4.17
1810 1895 5.065218 ACGGCACATTAAGATAGCTCAAAAG 59.935 40.000 0.00 0.00 0.00 2.27
1816 1901 4.585162 ACTAGACGGCACATTAAGATAGCT 59.415 41.667 0.00 0.00 0.00 3.32
1831 1916 4.031426 GTGCTAAAATCGTTCACTAGACGG 59.969 45.833 0.00 0.00 0.00 4.79
1849 1934 6.875948 TTTGTGCTCTGAAAATAAGTGCTA 57.124 33.333 0.00 0.00 35.65 3.49
1857 1942 5.859205 AGGAACTTTTGTGCTCTGAAAAT 57.141 34.783 0.00 0.00 27.25 1.82
1917 2002 2.031870 GGTGGGTGCAAGAAAACTTCT 58.968 47.619 0.00 0.00 43.15 2.85
1921 2006 0.389025 CAGGGTGGGTGCAAGAAAAC 59.611 55.000 0.00 0.00 0.00 2.43
1923 2008 0.032615 AACAGGGTGGGTGCAAGAAA 60.033 50.000 0.00 0.00 0.00 2.52
1924 2009 0.847373 TAACAGGGTGGGTGCAAGAA 59.153 50.000 0.00 0.00 0.00 2.52
1940 2025 7.170489 GGTGTAAAGTCTTGACCAGTTAGTAAC 59.830 40.741 4.78 4.78 0.00 2.50
1973 2058 9.265901 GCTACTCATATAATCAACAATCAGTGT 57.734 33.333 0.00 0.00 44.64 3.55
2048 2133 9.189156 CCAAAAATCCTACTCATAATTTCCTCA 57.811 33.333 0.00 0.00 0.00 3.86
2049 2134 9.190317 ACCAAAAATCCTACTCATAATTTCCTC 57.810 33.333 0.00 0.00 0.00 3.71
2079 2164 5.456763 GGTGGAAGTATGCTAGGATCCAAAT 60.457 44.000 15.82 4.20 38.58 2.32
2099 2184 0.744281 GGGTCAAACAACACAGGTGG 59.256 55.000 4.24 0.00 34.19 4.61
2103 2188 2.051334 TCTGGGGTCAAACAACACAG 57.949 50.000 0.00 0.00 0.00 3.66
2140 2226 9.218440 CCCAAAGTTGCAGAAATAATTATGTTT 57.782 29.630 0.00 0.00 30.40 2.83
2147 2233 6.855763 TGATCCCAAAGTTGCAGAAATAAT 57.144 33.333 0.00 0.00 0.00 1.28
2176 2262 7.013750 TGGTTATTTTCACACAGCAGTATTGAA 59.986 33.333 2.41 2.41 30.91 2.69
2284 2370 0.880278 ACGACGCAATGTTGACTGCT 60.880 50.000 0.00 0.00 36.38 4.24
2345 2432 6.207810 ACATGAATCTTAACGGCCAAACTTAA 59.792 34.615 2.24 0.00 0.00 1.85
2403 2490 9.309516 CTAAAAATTGATCATGTTAAGCAGCAT 57.690 29.630 0.00 0.00 0.00 3.79
2406 2493 9.844790 TCACTAAAAATTGATCATGTTAAGCAG 57.155 29.630 0.00 0.00 0.00 4.24
2419 2506 7.047891 ACAGTCAGTGAGTCACTAAAAATTGA 58.952 34.615 25.04 14.28 43.43 2.57
2490 2577 8.699283 ACAATCAACTCGAGGTATAAGTTTAC 57.301 34.615 18.41 0.00 31.04 2.01
2526 2613 7.388224 TGACGGCTAATTACTTTACATGAACAA 59.612 33.333 0.00 0.00 0.00 2.83
2530 2617 7.225931 GGATTGACGGCTAATTACTTTACATGA 59.774 37.037 0.00 0.00 0.00 3.07
2537 2630 4.080526 ACAGGGATTGACGGCTAATTACTT 60.081 41.667 0.00 0.00 0.00 2.24
2625 2719 0.991146 ATGGTATGCACAGGGTGTCA 59.009 50.000 0.00 0.00 35.75 3.58
2634 2728 6.402442 GGAAGCATTTTGAAAATGGTATGCAC 60.402 38.462 28.66 18.66 40.49 4.57
2819 2914 4.022849 GCTGAAACACTGGAGCAATAAGTT 60.023 41.667 0.00 0.00 0.00 2.66
2917 3012 7.756395 AATTCAAGAAGAATCTGCTGAAGAA 57.244 32.000 0.00 0.00 46.09 2.52
2918 3013 7.065563 GCTAATTCAAGAAGAATCTGCTGAAGA 59.934 37.037 0.00 0.00 46.09 2.87
2919 3014 7.148289 TGCTAATTCAAGAAGAATCTGCTGAAG 60.148 37.037 0.00 0.00 46.09 3.02
3058 3153 8.219769 CAGAATCAATAATCTATCTGCGTTCAC 58.780 37.037 0.00 0.00 0.00 3.18
3061 3156 8.768955 GTTCAGAATCAATAATCTATCTGCGTT 58.231 33.333 0.00 0.00 35.44 4.84
3132 3236 8.367911 TGAACTCAGTGTCTACATCTTTTATGT 58.632 33.333 0.00 0.00 36.13 2.29
3196 3300 5.014544 ACATAATCCTAAGGTGCATAGCCAT 59.985 40.000 0.00 0.00 0.00 4.40
3207 3311 4.576463 GGCACAACAGACATAATCCTAAGG 59.424 45.833 0.00 0.00 0.00 2.69
3221 3325 0.588252 CGAAGGTGAAGGCACAACAG 59.412 55.000 0.00 0.00 46.96 3.16
3222 3326 0.107410 ACGAAGGTGAAGGCACAACA 60.107 50.000 0.00 0.00 46.96 3.33
3223 3327 0.586802 GACGAAGGTGAAGGCACAAC 59.413 55.000 0.00 0.00 46.96 3.32
3227 3331 1.134220 ACAAAGACGAAGGTGAAGGCA 60.134 47.619 0.00 0.00 0.00 4.75
3235 3339 8.084590 AGTATTAAGTCAAACAAAGACGAAGG 57.915 34.615 0.00 0.00 40.84 3.46
3265 3369 6.647895 CAGCTACTATGAACACATGCATCATA 59.352 38.462 0.00 1.18 35.53 2.15
3272 3376 4.633126 ACAAGCAGCTACTATGAACACATG 59.367 41.667 0.00 0.00 0.00 3.21
3273 3377 4.836825 ACAAGCAGCTACTATGAACACAT 58.163 39.130 0.00 0.00 0.00 3.21
3301 3405 5.997746 TGAGTGCAAGCTAAGAAACAGTAAT 59.002 36.000 0.00 0.00 0.00 1.89
3467 3574 7.677276 GCGAATATCACAAATAAGCTTCACACT 60.677 37.037 0.00 0.00 0.00 3.55
3492 3599 7.519843 CATCATGTTTCATAGAGAGCAATAGC 58.480 38.462 0.00 0.00 42.56 2.97
3552 3659 3.364764 GCAGAAGAACATGCTGTGAAGAC 60.365 47.826 0.00 0.00 39.38 3.01
3566 3673 9.638239 GACAAAAATAAATATGGTGCAGAAGAA 57.362 29.630 0.00 0.00 0.00 2.52
3637 3744 9.916360 ATGATGTATAGCATGTCATAATTCCAT 57.084 29.630 0.00 0.00 38.06 3.41
3737 3845 2.034939 TGAGCTTTCAACAAGCCACATG 59.965 45.455 2.93 0.00 44.01 3.21
3823 3932 4.636249 GCCACTCTTCCTGATAATACTGG 58.364 47.826 0.00 0.00 0.00 4.00
3828 3937 2.366916 CCTCGCCACTCTTCCTGATAAT 59.633 50.000 0.00 0.00 0.00 1.28
3845 3954 5.064707 CCAACCAATAAATACAGACACCTCG 59.935 44.000 0.00 0.00 0.00 4.63
3846 3955 6.177610 TCCAACCAATAAATACAGACACCTC 58.822 40.000 0.00 0.00 0.00 3.85
3883 3992 5.792741 CCACAAGGGATTGAAATTTGCTTA 58.207 37.500 0.00 0.00 40.01 3.09
3887 3996 3.008266 AGGCCACAAGGGATTGAAATTTG 59.992 43.478 5.01 0.00 40.01 2.32
3891 4000 1.886222 CGAGGCCACAAGGGATTGAAA 60.886 52.381 5.01 0.00 40.01 2.69
3981 4090 5.659440 TCTTGGGGCATAAAATTGACTTC 57.341 39.130 0.00 0.00 0.00 3.01
3988 4097 6.070078 ACACATTGAATCTTGGGGCATAAAAT 60.070 34.615 0.00 0.00 0.00 1.82
3991 4100 4.352009 ACACATTGAATCTTGGGGCATAA 58.648 39.130 0.00 0.00 0.00 1.90
4146 4255 2.620115 CTGCACCAAAGAATGTGACTGT 59.380 45.455 0.00 0.00 34.37 3.55
4162 4271 3.368571 GCTGTCCCCTTGCTGCAC 61.369 66.667 0.00 0.00 0.00 4.57
4178 4287 0.863144 TGTTCGACTTAGCGGTTTGC 59.137 50.000 0.00 0.00 46.98 3.68
4182 4291 2.416972 GGAAGATGTTCGACTTAGCGGT 60.417 50.000 0.00 0.00 32.92 5.68
4186 4295 6.263392 TGAGGATAGGAAGATGTTCGACTTAG 59.737 42.308 0.00 0.00 32.92 2.18
4344 4453 3.181436 CCATCTGTATCCCAGCTCCAAAT 60.181 47.826 0.00 0.00 41.25 2.32
4437 4546 1.610379 ACCAAAGGGCATGCTTCCC 60.610 57.895 18.92 10.66 44.25 3.97
4474 4583 3.372822 CAGTCATTTTGCATTGGATTGCC 59.627 43.478 0.00 0.00 42.06 4.52
4551 4660 6.537301 TCGGAAGCGATATTTGTTTCTGTAAT 59.463 34.615 11.43 0.00 35.29 1.89
4650 4759 6.097270 GGTGGGGTGGTAAATTTAGGTAATTC 59.903 42.308 0.00 0.00 35.39 2.17
4881 4990 5.174761 GTGCTGCATTCTTAGAATAGACTCG 59.825 44.000 5.27 0.00 0.00 4.18
4932 5041 9.791820 CAAGCTTGATGATAATAATCAACAACA 57.208 29.630 22.31 0.00 44.96 3.33
5037 5146 4.442052 GCATGCTGGTCACTACTTGATCTA 60.442 45.833 11.37 0.00 36.15 1.98
5047 5156 3.118149 TGAAGATATGCATGCTGGTCACT 60.118 43.478 20.33 7.92 0.00 3.41
5178 5287 0.615850 CTTTCTCCAGGGACCTCACC 59.384 60.000 0.00 0.00 0.00 4.02
5307 5416 4.441695 CGCCTTCGCCTCAGCTGA 62.442 66.667 17.19 17.19 36.60 4.26
5646 5755 0.606401 GGCAAGCACTAAGAGCACCA 60.606 55.000 0.00 0.00 0.00 4.17
6146 6255 3.750371 TCACCATTCCGAAGACAATTGT 58.250 40.909 11.78 11.78 0.00 2.71
6166 6275 7.492524 TGCATGTCTTCGGATATATAAGGATC 58.507 38.462 0.00 0.00 0.00 3.36
6357 6471 4.808042 TGGTCTATCTGTGATCATCAGGA 58.192 43.478 18.91 10.12 34.15 3.86
6379 6493 8.213679 ACAGCAATATAAGTACATGTTCTCCAT 58.786 33.333 2.30 4.35 0.00 3.41
6386 6501 9.534565 CAGAGTTACAGCAATATAAGTACATGT 57.465 33.333 2.69 2.69 0.00 3.21
6632 6752 8.790718 CATCTTTCCAGCAGTAGCATATAAATT 58.209 33.333 0.00 0.00 45.49 1.82
6721 6842 2.846206 TCCATTTCCAGTGCTCCACTAT 59.154 45.455 0.00 0.00 43.43 2.12
6788 6910 2.043953 GGCCCCACATCCCTTGAC 60.044 66.667 0.00 0.00 0.00 3.18
6872 7008 7.905604 TGTATACTTTCTCTGGTTGATTGTG 57.094 36.000 4.17 0.00 0.00 3.33
6910 7050 0.962855 GGTGGCCTCTCTTTTGCTCC 60.963 60.000 3.32 0.00 0.00 4.70
7028 7185 1.070786 GACGGGGTGCTCACTTTCA 59.929 57.895 0.00 0.00 0.00 2.69
7032 7189 3.991051 CACGACGGGGTGCTCACT 61.991 66.667 0.00 0.00 0.00 3.41
7048 7205 2.029964 GCCGGTTCGACCTCAACA 59.970 61.111 1.90 0.00 35.66 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.