Multiple sequence alignment - TraesCS3A01G295500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G295500 chr3A 100.000 6350 0 0 1 6350 529771154 529777503 0.000000e+00 11727
1 TraesCS3A01G295500 chr3A 86.571 767 81 8 5598 6342 529842642 529843408 0.000000e+00 826
2 TraesCS3A01G295500 chr3D 94.467 6073 215 42 370 6350 421320497 421314454 0.000000e+00 9241
3 TraesCS3A01G295500 chr3D 87.042 764 77 8 5601 6342 421291954 421291191 0.000000e+00 843
4 TraesCS3A01G295500 chr3D 78.864 317 46 13 5894 6198 421704614 421704307 1.810000e-45 195
5 TraesCS3A01G295500 chr3D 77.603 317 46 15 5894 6198 422023175 422022872 1.090000e-37 169
6 TraesCS3A01G295500 chr3B 95.811 4058 118 18 1489 5515 548050146 548046110 0.000000e+00 6505
7 TraesCS3A01G295500 chr3B 88.654 1181 50 30 362 1484 548051340 548050186 0.000000e+00 1362
8 TraesCS3A01G295500 chr3B 94.617 836 28 7 5531 6350 548045930 548045096 0.000000e+00 1279
9 TraesCS3A01G295500 chr3B 86.405 765 81 9 5601 6342 548040165 548039401 0.000000e+00 815
10 TraesCS3A01G295500 chr3B 77.603 317 50 12 5894 6198 549427794 549427487 8.460000e-39 172
11 TraesCS3A01G295500 chr1D 93.134 335 18 4 1 331 438869660 438869327 2.660000e-133 486
12 TraesCS3A01G295500 chr1D 92.197 346 20 5 1 339 300706870 300707215 3.440000e-132 483
13 TraesCS3A01G295500 chr4D 92.398 342 22 2 1 338 348414995 348414654 9.570000e-133 484
14 TraesCS3A01G295500 chr1B 91.931 347 16 10 1 338 670050994 670051337 5.760000e-130 475
15 TraesCS3A01G295500 chr1B 91.545 343 22 5 1 338 40950457 40950117 3.470000e-127 466
16 TraesCS3A01G295500 chr7B 92.492 333 18 6 1 330 739479666 739479338 2.680000e-128 470
17 TraesCS3A01G295500 chr2B 92.262 336 19 6 1 331 155115517 155115850 2.680000e-128 470
18 TraesCS3A01G295500 chr7D 91.379 348 21 7 1 342 236301817 236301473 9.640000e-128 468
19 TraesCS3A01G295500 chr5D 91.570 344 22 6 1 338 260861122 260861464 9.640000e-128 468
20 TraesCS3A01G295500 chr2A 79.743 311 47 7 5883 6181 15815213 15815519 1.790000e-50 211


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G295500 chr3A 529771154 529777503 6349 False 11727.000000 11727 100.000000 1 6350 1 chr3A.!!$F1 6349
1 TraesCS3A01G295500 chr3A 529842642 529843408 766 False 826.000000 826 86.571000 5598 6342 1 chr3A.!!$F2 744
2 TraesCS3A01G295500 chr3D 421314454 421320497 6043 True 9241.000000 9241 94.467000 370 6350 1 chr3D.!!$R2 5980
3 TraesCS3A01G295500 chr3D 421291191 421291954 763 True 843.000000 843 87.042000 5601 6342 1 chr3D.!!$R1 741
4 TraesCS3A01G295500 chr3B 548045096 548051340 6244 True 3048.666667 6505 93.027333 362 6350 3 chr3B.!!$R3 5988
5 TraesCS3A01G295500 chr3B 548039401 548040165 764 True 815.000000 815 86.405000 5601 6342 1 chr3B.!!$R1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.033090 AACCTCGTCGGGTTTCACTC 59.967 55.000 11.08 0.00 46.21 3.51 F
138 139 0.038166 TCGGCTTGCCTTTGGATTCT 59.962 50.000 10.12 0.00 0.00 2.40 F
170 171 0.038526 CCGTCTGCGTCACTACCTTT 60.039 55.000 0.00 0.00 36.15 3.11 F
368 369 0.320771 AAGCAACCTGTCTAGTGCCG 60.321 55.000 0.00 0.00 0.00 5.69 F
1137 1193 0.459078 CTGCTGCTGCTACTGCTCTA 59.541 55.000 17.00 0.00 40.48 2.43 F
1630 1731 0.467384 CTTGGACGGGAGATGCAGAT 59.533 55.000 0.00 0.00 0.00 2.90 F
2314 2421 0.704076 ACAGGCTTCCTAAATGGCCA 59.296 50.000 8.56 8.56 46.23 5.36 F
3181 3296 2.624838 AGTTGCTGCTTGTGCTAAACAT 59.375 40.909 0.00 0.00 38.99 2.71 F
3968 4102 0.771127 TTGGCCCTGCAGTAACTTCT 59.229 50.000 13.81 0.00 0.00 2.85 F
4387 4523 1.174783 TCCTCGTAGCTGGAAGTCAC 58.825 55.000 0.00 0.00 35.30 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 1962 0.179073 CAACTACTCCGGATGCAGGG 60.179 60.000 3.57 0.00 0.00 4.45 R
1974 2081 5.271598 TGAATTGCCTCATTTAAGGGTGAT 58.728 37.500 0.00 0.00 36.88 3.06 R
1978 2085 7.333323 AGAAATTGAATTGCCTCATTTAAGGG 58.667 34.615 0.00 0.00 36.88 3.95 R
2335 2442 2.049433 GCAAGCAGCCAAGCACTG 60.049 61.111 0.00 0.00 37.23 3.66 R
3063 3178 3.672767 TCCCTAAACTGTTCTCGAACC 57.327 47.619 7.28 0.00 40.46 3.62 R
3181 3296 1.950909 GTTCCACCATCACCAACGAAA 59.049 47.619 0.00 0.00 0.00 3.46 R
3830 3957 0.946221 AGCAGCTGATATTACGCGGC 60.946 55.000 20.43 0.36 43.53 6.53 R
4550 4689 4.080015 CCATCTGTTCCAACCAGGGTATAA 60.080 45.833 0.00 0.00 38.24 0.98 R
5297 5440 1.451387 CTCAACACGGCCCATACCC 60.451 63.158 0.00 0.00 0.00 3.69 R
5409 5552 2.352561 TGTGGACCAAGGATCCCTAA 57.647 50.000 8.55 0.00 35.12 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.032356 GCAAACAGCACAAAGGGC 57.968 55.556 0.00 0.00 44.79 5.19
32 33 1.595109 GCAAACAGCACAAAGGGCC 60.595 57.895 0.00 0.00 44.79 5.80
33 34 1.821936 CAAACAGCACAAAGGGCCA 59.178 52.632 6.18 0.00 0.00 5.36
34 35 0.530431 CAAACAGCACAAAGGGCCAC 60.530 55.000 6.18 0.00 0.00 5.01
35 36 1.685355 AAACAGCACAAAGGGCCACC 61.685 55.000 6.18 0.00 0.00 4.61
36 37 3.673484 CAGCACAAAGGGCCACCG 61.673 66.667 6.18 0.00 43.47 4.94
57 58 3.159984 GCTTGAGCAACCTCGTCG 58.840 61.111 0.00 0.00 41.13 5.12
58 59 2.383527 GCTTGAGCAACCTCGTCGG 61.384 63.158 0.00 0.00 41.13 4.79
59 60 1.738099 CTTGAGCAACCTCGTCGGG 60.738 63.158 0.00 0.00 41.13 5.14
60 61 2.436087 CTTGAGCAACCTCGTCGGGT 62.436 60.000 0.00 0.00 41.13 5.28
62 63 1.301479 GAGCAACCTCGTCGGGTTT 60.301 57.895 13.44 3.35 46.21 3.27
63 64 1.289800 GAGCAACCTCGTCGGGTTTC 61.290 60.000 13.44 10.12 46.21 2.78
64 65 1.595929 GCAACCTCGTCGGGTTTCA 60.596 57.895 13.44 0.00 46.21 2.69
65 66 1.838568 GCAACCTCGTCGGGTTTCAC 61.839 60.000 13.44 5.36 46.21 3.18
66 67 0.249741 CAACCTCGTCGGGTTTCACT 60.250 55.000 13.44 0.00 46.21 3.41
67 68 0.033090 AACCTCGTCGGGTTTCACTC 59.967 55.000 11.08 0.00 46.21 3.51
68 69 1.080025 CCTCGTCGGGTTTCACTCC 60.080 63.158 0.00 0.00 0.00 3.85
69 70 1.663739 CTCGTCGGGTTTCACTCCA 59.336 57.895 0.00 0.00 0.00 3.86
70 71 0.388649 CTCGTCGGGTTTCACTCCAG 60.389 60.000 0.00 0.00 0.00 3.86
71 72 2.027625 CGTCGGGTTTCACTCCAGC 61.028 63.158 0.00 0.00 0.00 4.85
72 73 1.671379 GTCGGGTTTCACTCCAGCC 60.671 63.158 0.00 0.00 0.00 4.85
73 74 2.144078 TCGGGTTTCACTCCAGCCA 61.144 57.895 0.00 0.00 0.00 4.75
74 75 1.966451 CGGGTTTCACTCCAGCCAC 60.966 63.158 0.00 0.00 0.00 5.01
75 76 1.966451 GGGTTTCACTCCAGCCACG 60.966 63.158 0.00 0.00 0.00 4.94
76 77 1.070786 GGTTTCACTCCAGCCACGA 59.929 57.895 0.00 0.00 0.00 4.35
77 78 1.228657 GGTTTCACTCCAGCCACGAC 61.229 60.000 0.00 0.00 0.00 4.34
78 79 0.249911 GTTTCACTCCAGCCACGACT 60.250 55.000 0.00 0.00 0.00 4.18
79 80 0.249868 TTTCACTCCAGCCACGACTG 60.250 55.000 0.00 0.00 37.42 3.51
80 81 2.715532 TTCACTCCAGCCACGACTGC 62.716 60.000 0.00 0.00 36.29 4.40
81 82 4.363990 ACTCCAGCCACGACTGCG 62.364 66.667 0.00 0.00 44.79 5.18
101 102 3.245443 GATGCATCGACCGTTACGA 57.755 52.632 11.68 0.00 43.65 3.43
102 103 0.844503 GATGCATCGACCGTTACGAC 59.155 55.000 11.68 0.00 42.37 4.34
103 104 0.454600 ATGCATCGACCGTTACGACT 59.545 50.000 6.24 0.00 42.37 4.18
104 105 0.455464 TGCATCGACCGTTACGACTG 60.455 55.000 6.24 0.00 42.37 3.51
105 106 0.455633 GCATCGACCGTTACGACTGT 60.456 55.000 6.24 0.00 42.37 3.55
106 107 1.256652 CATCGACCGTTACGACTGTG 58.743 55.000 6.24 0.00 42.37 3.66
107 108 0.169672 ATCGACCGTTACGACTGTGG 59.830 55.000 6.24 0.00 42.37 4.17
108 109 1.443194 CGACCGTTACGACTGTGGG 60.443 63.158 6.24 0.00 0.00 4.61
109 110 1.080298 GACCGTTACGACTGTGGGG 60.080 63.158 6.24 0.00 0.00 4.96
110 111 2.263540 CCGTTACGACTGTGGGGG 59.736 66.667 6.24 0.00 0.00 5.40
111 112 2.576832 CCGTTACGACTGTGGGGGT 61.577 63.158 6.24 0.00 0.00 4.95
112 113 1.373748 CGTTACGACTGTGGGGGTG 60.374 63.158 0.00 0.00 0.00 4.61
113 114 1.750297 GTTACGACTGTGGGGGTGT 59.250 57.895 0.00 0.00 0.00 4.16
114 115 0.601841 GTTACGACTGTGGGGGTGTG 60.602 60.000 0.00 0.00 0.00 3.82
115 116 1.049855 TTACGACTGTGGGGGTGTGT 61.050 55.000 0.00 0.00 0.00 3.72
116 117 1.466025 TACGACTGTGGGGGTGTGTC 61.466 60.000 0.00 0.00 0.00 3.67
117 118 2.430367 GACTGTGGGGGTGTGTCC 59.570 66.667 0.00 0.00 0.00 4.02
118 119 3.530910 GACTGTGGGGGTGTGTCCG 62.531 68.421 0.00 0.00 37.00 4.79
119 120 3.556306 CTGTGGGGGTGTGTCCGT 61.556 66.667 0.00 0.00 37.00 4.69
120 121 3.530910 CTGTGGGGGTGTGTCCGTC 62.531 68.421 0.00 0.00 37.00 4.79
121 122 4.675029 GTGGGGGTGTGTCCGTCG 62.675 72.222 0.00 0.00 37.00 5.12
125 126 4.309950 GGGTGTGTCCGTCGGCTT 62.310 66.667 6.34 0.00 37.00 4.35
126 127 3.041940 GGTGTGTCCGTCGGCTTG 61.042 66.667 6.34 0.00 0.00 4.01
127 128 3.712881 GTGTGTCCGTCGGCTTGC 61.713 66.667 6.34 0.00 0.00 4.01
128 129 4.980805 TGTGTCCGTCGGCTTGCC 62.981 66.667 6.34 0.75 0.00 4.52
129 130 4.681978 GTGTCCGTCGGCTTGCCT 62.682 66.667 6.34 0.00 0.00 4.75
130 131 3.936203 TGTCCGTCGGCTTGCCTT 61.936 61.111 6.34 0.00 0.00 4.35
131 132 2.668550 GTCCGTCGGCTTGCCTTT 60.669 61.111 6.34 0.00 0.00 3.11
132 133 2.668212 TCCGTCGGCTTGCCTTTG 60.668 61.111 6.34 0.00 0.00 2.77
133 134 3.737172 CCGTCGGCTTGCCTTTGG 61.737 66.667 10.12 4.52 0.00 3.28
134 135 2.668212 CGTCGGCTTGCCTTTGGA 60.668 61.111 10.12 0.00 0.00 3.53
135 136 2.040544 CGTCGGCTTGCCTTTGGAT 61.041 57.895 10.12 0.00 0.00 3.41
136 137 1.586154 CGTCGGCTTGCCTTTGGATT 61.586 55.000 10.12 0.00 0.00 3.01
137 138 0.171231 GTCGGCTTGCCTTTGGATTC 59.829 55.000 10.12 0.00 0.00 2.52
138 139 0.038166 TCGGCTTGCCTTTGGATTCT 59.962 50.000 10.12 0.00 0.00 2.40
139 140 0.890683 CGGCTTGCCTTTGGATTCTT 59.109 50.000 10.12 0.00 0.00 2.52
140 141 1.135286 CGGCTTGCCTTTGGATTCTTC 60.135 52.381 10.12 0.00 0.00 2.87
141 142 2.174360 GGCTTGCCTTTGGATTCTTCT 58.826 47.619 4.11 0.00 0.00 2.85
142 143 2.165234 GGCTTGCCTTTGGATTCTTCTC 59.835 50.000 4.11 0.00 0.00 2.87
143 144 2.165234 GCTTGCCTTTGGATTCTTCTCC 59.835 50.000 0.00 0.00 35.74 3.71
144 145 3.424703 CTTGCCTTTGGATTCTTCTCCA 58.575 45.455 0.00 0.00 43.62 3.86
145 146 3.077484 TGCCTTTGGATTCTTCTCCAG 57.923 47.619 0.00 0.00 45.80 3.86
146 147 2.376518 TGCCTTTGGATTCTTCTCCAGT 59.623 45.455 0.00 0.00 45.80 4.00
147 148 3.013219 GCCTTTGGATTCTTCTCCAGTC 58.987 50.000 0.00 0.00 45.80 3.51
148 149 3.308046 GCCTTTGGATTCTTCTCCAGTCT 60.308 47.826 0.00 0.00 45.80 3.24
149 150 4.512484 CCTTTGGATTCTTCTCCAGTCTC 58.488 47.826 0.00 0.00 45.80 3.36
150 151 4.019860 CCTTTGGATTCTTCTCCAGTCTCA 60.020 45.833 0.00 0.00 45.80 3.27
151 152 4.543590 TTGGATTCTTCTCCAGTCTCAC 57.456 45.455 0.00 0.00 45.80 3.51
152 153 2.834549 TGGATTCTTCTCCAGTCTCACC 59.165 50.000 0.00 0.00 40.43 4.02
153 154 2.159170 GGATTCTTCTCCAGTCTCACCG 60.159 54.545 0.00 0.00 35.24 4.94
154 155 1.996798 TTCTTCTCCAGTCTCACCGT 58.003 50.000 0.00 0.00 0.00 4.83
155 156 1.535833 TCTTCTCCAGTCTCACCGTC 58.464 55.000 0.00 0.00 0.00 4.79
156 157 1.074084 TCTTCTCCAGTCTCACCGTCT 59.926 52.381 0.00 0.00 0.00 4.18
157 158 1.201181 CTTCTCCAGTCTCACCGTCTG 59.799 57.143 0.00 0.00 0.00 3.51
158 159 1.214062 CTCCAGTCTCACCGTCTGC 59.786 63.158 0.00 0.00 0.00 4.26
159 160 2.126307 CCAGTCTCACCGTCTGCG 60.126 66.667 0.00 0.00 37.95 5.18
160 161 2.645567 CAGTCTCACCGTCTGCGT 59.354 61.111 0.00 0.00 36.15 5.24
161 162 1.442857 CAGTCTCACCGTCTGCGTC 60.443 63.158 0.00 0.00 36.15 5.19
162 163 1.897137 AGTCTCACCGTCTGCGTCA 60.897 57.895 0.00 0.00 36.15 4.35
163 164 1.729838 GTCTCACCGTCTGCGTCAC 60.730 63.158 0.00 0.00 36.15 3.67
164 165 1.897137 TCTCACCGTCTGCGTCACT 60.897 57.895 0.00 0.00 36.15 3.41
165 166 0.604511 TCTCACCGTCTGCGTCACTA 60.605 55.000 0.00 0.00 36.15 2.74
166 167 0.454620 CTCACCGTCTGCGTCACTAC 60.455 60.000 0.00 0.00 36.15 2.73
167 168 1.443872 CACCGTCTGCGTCACTACC 60.444 63.158 0.00 0.00 36.15 3.18
168 169 1.602888 ACCGTCTGCGTCACTACCT 60.603 57.895 0.00 0.00 36.15 3.08
169 170 1.177256 ACCGTCTGCGTCACTACCTT 61.177 55.000 0.00 0.00 36.15 3.50
170 171 0.038526 CCGTCTGCGTCACTACCTTT 60.039 55.000 0.00 0.00 36.15 3.11
171 172 1.060713 CGTCTGCGTCACTACCTTTG 58.939 55.000 0.00 0.00 0.00 2.77
172 173 0.790814 GTCTGCGTCACTACCTTTGC 59.209 55.000 0.00 0.00 0.00 3.68
173 174 0.666274 TCTGCGTCACTACCTTTGCG 60.666 55.000 0.00 0.00 0.00 4.85
174 175 0.666274 CTGCGTCACTACCTTTGCGA 60.666 55.000 0.00 0.00 0.00 5.10
175 176 0.942410 TGCGTCACTACCTTTGCGAC 60.942 55.000 0.00 0.00 0.00 5.19
176 177 0.666577 GCGTCACTACCTTTGCGACT 60.667 55.000 0.00 0.00 0.00 4.18
177 178 1.060713 CGTCACTACCTTTGCGACTG 58.939 55.000 0.00 0.00 0.00 3.51
178 179 0.790814 GTCACTACCTTTGCGACTGC 59.209 55.000 0.00 0.00 43.20 4.40
202 203 5.584551 GGGGGATGTTGAGTATAAGGATT 57.415 43.478 0.00 0.00 0.00 3.01
203 204 6.697641 GGGGGATGTTGAGTATAAGGATTA 57.302 41.667 0.00 0.00 33.48 1.75
204 205 7.272144 GGGGGATGTTGAGTATAAGGATTAT 57.728 40.000 0.00 0.00 44.82 1.28
205 206 7.699878 GGGGGATGTTGAGTATAAGGATTATT 58.300 38.462 0.00 0.00 38.31 1.40
206 207 8.832735 GGGGGATGTTGAGTATAAGGATTATTA 58.167 37.037 0.00 0.00 38.31 0.98
207 208 9.892130 GGGGATGTTGAGTATAAGGATTATTAG 57.108 37.037 0.00 0.00 38.31 1.73
208 209 9.892130 GGGATGTTGAGTATAAGGATTATTAGG 57.108 37.037 0.00 0.00 38.31 2.69
244 245 3.363787 GGATTTGGTCCTGCCTTGT 57.636 52.632 0.00 0.00 44.16 3.16
245 246 1.177401 GGATTTGGTCCTGCCTTGTC 58.823 55.000 0.00 0.00 44.16 3.18
246 247 1.272147 GGATTTGGTCCTGCCTTGTCT 60.272 52.381 0.00 0.00 44.16 3.41
247 248 2.519013 GATTTGGTCCTGCCTTGTCTT 58.481 47.619 0.00 0.00 38.35 3.01
248 249 1.691196 TTTGGTCCTGCCTTGTCTTG 58.309 50.000 0.00 0.00 38.35 3.02
249 250 0.550914 TTGGTCCTGCCTTGTCTTGT 59.449 50.000 0.00 0.00 38.35 3.16
250 251 1.429930 TGGTCCTGCCTTGTCTTGTA 58.570 50.000 0.00 0.00 38.35 2.41
251 252 1.071699 TGGTCCTGCCTTGTCTTGTAC 59.928 52.381 0.00 0.00 38.35 2.90
252 253 1.348036 GGTCCTGCCTTGTCTTGTACT 59.652 52.381 0.00 0.00 0.00 2.73
253 254 2.613223 GGTCCTGCCTTGTCTTGTACTC 60.613 54.545 0.00 0.00 0.00 2.59
254 255 2.300437 GTCCTGCCTTGTCTTGTACTCT 59.700 50.000 0.00 0.00 0.00 3.24
255 256 3.510360 GTCCTGCCTTGTCTTGTACTCTA 59.490 47.826 0.00 0.00 0.00 2.43
256 257 4.021368 GTCCTGCCTTGTCTTGTACTCTAA 60.021 45.833 0.00 0.00 0.00 2.10
257 258 4.220821 TCCTGCCTTGTCTTGTACTCTAAG 59.779 45.833 0.00 0.00 0.00 2.18
258 259 4.021016 CCTGCCTTGTCTTGTACTCTAAGT 60.021 45.833 0.00 0.00 0.00 2.24
259 260 5.511545 CCTGCCTTGTCTTGTACTCTAAGTT 60.512 44.000 0.00 0.00 0.00 2.66
260 261 5.297547 TGCCTTGTCTTGTACTCTAAGTTG 58.702 41.667 0.00 0.00 0.00 3.16
261 262 4.691216 GCCTTGTCTTGTACTCTAAGTTGG 59.309 45.833 0.00 0.00 0.00 3.77
262 263 5.742255 GCCTTGTCTTGTACTCTAAGTTGGT 60.742 44.000 0.00 0.00 0.00 3.67
263 264 5.927115 CCTTGTCTTGTACTCTAAGTTGGTC 59.073 44.000 0.00 0.00 0.00 4.02
264 265 6.239345 CCTTGTCTTGTACTCTAAGTTGGTCT 60.239 42.308 0.00 0.00 0.00 3.85
265 266 6.726490 TGTCTTGTACTCTAAGTTGGTCTT 57.274 37.500 0.00 0.00 39.89 3.01
266 267 7.120923 TGTCTTGTACTCTAAGTTGGTCTTT 57.879 36.000 0.00 0.00 37.56 2.52
267 268 6.984474 TGTCTTGTACTCTAAGTTGGTCTTTG 59.016 38.462 0.00 0.00 37.56 2.77
268 269 6.985059 GTCTTGTACTCTAAGTTGGTCTTTGT 59.015 38.462 0.00 0.00 37.56 2.83
269 270 8.139989 GTCTTGTACTCTAAGTTGGTCTTTGTA 58.860 37.037 0.00 0.00 37.56 2.41
270 271 8.139989 TCTTGTACTCTAAGTTGGTCTTTGTAC 58.860 37.037 0.00 0.00 37.07 2.90
271 272 7.592885 TGTACTCTAAGTTGGTCTTTGTACT 57.407 36.000 0.00 0.00 37.23 2.73
272 273 7.655490 TGTACTCTAAGTTGGTCTTTGTACTC 58.345 38.462 0.00 0.00 37.23 2.59
273 274 6.099159 ACTCTAAGTTGGTCTTTGTACTCC 57.901 41.667 0.00 0.00 37.56 3.85
274 275 5.839606 ACTCTAAGTTGGTCTTTGTACTCCT 59.160 40.000 0.00 0.00 37.56 3.69
275 276 7.008941 ACTCTAAGTTGGTCTTTGTACTCCTA 58.991 38.462 0.00 0.00 37.56 2.94
276 277 7.674772 ACTCTAAGTTGGTCTTTGTACTCCTAT 59.325 37.037 0.00 0.00 37.56 2.57
277 278 9.186837 CTCTAAGTTGGTCTTTGTACTCCTATA 57.813 37.037 0.00 0.00 37.56 1.31
278 279 9.710818 TCTAAGTTGGTCTTTGTACTCCTATAT 57.289 33.333 0.00 0.00 37.56 0.86
284 285 8.890410 TGGTCTTTGTACTCCTATATATACCC 57.110 38.462 0.00 0.00 0.00 3.69
285 286 8.458575 TGGTCTTTGTACTCCTATATATACCCA 58.541 37.037 0.00 0.00 0.00 4.51
286 287 8.747471 GGTCTTTGTACTCCTATATATACCCAC 58.253 40.741 0.00 0.00 0.00 4.61
287 288 8.457261 GTCTTTGTACTCCTATATATACCCACG 58.543 40.741 0.00 0.00 0.00 4.94
288 289 8.385491 TCTTTGTACTCCTATATATACCCACGA 58.615 37.037 0.00 0.00 0.00 4.35
289 290 8.571461 TTTGTACTCCTATATATACCCACGAG 57.429 38.462 0.00 0.00 0.00 4.18
290 291 7.500629 TGTACTCCTATATATACCCACGAGA 57.499 40.000 0.00 0.00 0.00 4.04
291 292 7.334090 TGTACTCCTATATATACCCACGAGAC 58.666 42.308 0.00 0.00 0.00 3.36
292 293 6.639590 ACTCCTATATATACCCACGAGACT 57.360 41.667 0.00 0.00 0.00 3.24
293 294 6.652053 ACTCCTATATATACCCACGAGACTC 58.348 44.000 0.00 0.00 0.00 3.36
294 295 6.215023 ACTCCTATATATACCCACGAGACTCA 59.785 42.308 2.82 0.00 0.00 3.41
295 296 7.024345 TCCTATATATACCCACGAGACTCAA 57.976 40.000 2.82 0.00 0.00 3.02
296 297 7.110810 TCCTATATATACCCACGAGACTCAAG 58.889 42.308 2.82 0.00 0.00 3.02
297 298 5.646577 ATATATACCCACGAGACTCAAGC 57.353 43.478 2.82 0.00 0.00 4.01
298 299 1.557099 ATACCCACGAGACTCAAGCA 58.443 50.000 2.82 0.00 0.00 3.91
299 300 1.334160 TACCCACGAGACTCAAGCAA 58.666 50.000 2.82 0.00 0.00 3.91
300 301 0.687354 ACCCACGAGACTCAAGCAAT 59.313 50.000 2.82 0.00 0.00 3.56
301 302 1.899814 ACCCACGAGACTCAAGCAATA 59.100 47.619 2.82 0.00 0.00 1.90
302 303 2.271800 CCCACGAGACTCAAGCAATAC 58.728 52.381 2.82 0.00 0.00 1.89
303 304 2.353704 CCCACGAGACTCAAGCAATACA 60.354 50.000 2.82 0.00 0.00 2.29
304 305 3.325870 CCACGAGACTCAAGCAATACAA 58.674 45.455 2.82 0.00 0.00 2.41
305 306 3.935203 CCACGAGACTCAAGCAATACAAT 59.065 43.478 2.82 0.00 0.00 2.71
306 307 5.109210 CCACGAGACTCAAGCAATACAATA 58.891 41.667 2.82 0.00 0.00 1.90
307 308 5.580691 CCACGAGACTCAAGCAATACAATAA 59.419 40.000 2.82 0.00 0.00 1.40
308 309 6.092122 CCACGAGACTCAAGCAATACAATAAA 59.908 38.462 2.82 0.00 0.00 1.40
309 310 6.955963 CACGAGACTCAAGCAATACAATAAAC 59.044 38.462 2.82 0.00 0.00 2.01
310 311 6.874134 ACGAGACTCAAGCAATACAATAAACT 59.126 34.615 2.82 0.00 0.00 2.66
311 312 8.033038 ACGAGACTCAAGCAATACAATAAACTA 58.967 33.333 2.82 0.00 0.00 2.24
312 313 9.035607 CGAGACTCAAGCAATACAATAAACTAT 57.964 33.333 2.82 0.00 0.00 2.12
315 316 9.937175 GACTCAAGCAATACAATAAACTATTCC 57.063 33.333 0.00 0.00 0.00 3.01
316 317 9.461312 ACTCAAGCAATACAATAAACTATTCCA 57.539 29.630 0.00 0.00 0.00 3.53
317 318 9.722056 CTCAAGCAATACAATAAACTATTCCAC 57.278 33.333 0.00 0.00 0.00 4.02
318 319 8.682710 TCAAGCAATACAATAAACTATTCCACC 58.317 33.333 0.00 0.00 0.00 4.61
319 320 8.465999 CAAGCAATACAATAAACTATTCCACCA 58.534 33.333 0.00 0.00 0.00 4.17
320 321 8.588290 AGCAATACAATAAACTATTCCACCAA 57.412 30.769 0.00 0.00 0.00 3.67
321 322 9.200817 AGCAATACAATAAACTATTCCACCAAT 57.799 29.630 0.00 0.00 0.00 3.16
322 323 9.463443 GCAATACAATAAACTATTCCACCAATC 57.537 33.333 0.00 0.00 0.00 2.67
323 324 9.965824 CAATACAATAAACTATTCCACCAATCC 57.034 33.333 0.00 0.00 0.00 3.01
324 325 9.936329 AATACAATAAACTATTCCACCAATCCT 57.064 29.630 0.00 0.00 0.00 3.24
325 326 7.881775 ACAATAAACTATTCCACCAATCCTC 57.118 36.000 0.00 0.00 0.00 3.71
326 327 7.643123 ACAATAAACTATTCCACCAATCCTCT 58.357 34.615 0.00 0.00 0.00 3.69
327 328 7.775561 ACAATAAACTATTCCACCAATCCTCTC 59.224 37.037 0.00 0.00 0.00 3.20
328 329 7.698163 ATAAACTATTCCACCAATCCTCTCT 57.302 36.000 0.00 0.00 0.00 3.10
329 330 5.622346 AACTATTCCACCAATCCTCTCTC 57.378 43.478 0.00 0.00 0.00 3.20
330 331 4.889780 ACTATTCCACCAATCCTCTCTCT 58.110 43.478 0.00 0.00 0.00 3.10
331 332 5.284582 ACTATTCCACCAATCCTCTCTCTT 58.715 41.667 0.00 0.00 0.00 2.85
332 333 4.769345 ATTCCACCAATCCTCTCTCTTC 57.231 45.455 0.00 0.00 0.00 2.87
333 334 3.481559 TCCACCAATCCTCTCTCTTCT 57.518 47.619 0.00 0.00 0.00 2.85
334 335 4.609866 TCCACCAATCCTCTCTCTTCTA 57.390 45.455 0.00 0.00 0.00 2.10
335 336 4.947883 TCCACCAATCCTCTCTCTTCTAA 58.052 43.478 0.00 0.00 0.00 2.10
336 337 4.712337 TCCACCAATCCTCTCTCTTCTAAC 59.288 45.833 0.00 0.00 0.00 2.34
337 338 4.467795 CCACCAATCCTCTCTCTTCTAACA 59.532 45.833 0.00 0.00 0.00 2.41
338 339 5.395103 CCACCAATCCTCTCTCTTCTAACAG 60.395 48.000 0.00 0.00 0.00 3.16
339 340 4.714308 ACCAATCCTCTCTCTTCTAACAGG 59.286 45.833 0.00 0.00 0.00 4.00
340 341 4.714308 CCAATCCTCTCTCTTCTAACAGGT 59.286 45.833 0.00 0.00 0.00 4.00
341 342 5.894393 CCAATCCTCTCTCTTCTAACAGGTA 59.106 44.000 0.00 0.00 0.00 3.08
342 343 6.040391 CCAATCCTCTCTCTTCTAACAGGTAG 59.960 46.154 0.00 0.00 0.00 3.18
343 344 4.528920 TCCTCTCTCTTCTAACAGGTAGC 58.471 47.826 0.00 0.00 0.00 3.58
344 345 4.018324 TCCTCTCTCTTCTAACAGGTAGCA 60.018 45.833 0.00 0.00 0.00 3.49
345 346 4.707448 CCTCTCTCTTCTAACAGGTAGCAA 59.293 45.833 0.00 0.00 0.00 3.91
346 347 5.362430 CCTCTCTCTTCTAACAGGTAGCAAT 59.638 44.000 0.00 0.00 0.00 3.56
347 348 6.214191 TCTCTCTTCTAACAGGTAGCAATG 57.786 41.667 0.00 0.00 0.00 2.82
348 349 5.952347 TCTCTCTTCTAACAGGTAGCAATGA 59.048 40.000 0.00 0.00 0.00 2.57
349 350 6.437477 TCTCTCTTCTAACAGGTAGCAATGAA 59.563 38.462 0.00 0.00 0.00 2.57
350 351 7.004555 TCTCTTCTAACAGGTAGCAATGAAA 57.995 36.000 0.00 0.00 0.00 2.69
351 352 7.099764 TCTCTTCTAACAGGTAGCAATGAAAG 58.900 38.462 0.00 0.00 0.00 2.62
352 353 5.643777 TCTTCTAACAGGTAGCAATGAAAGC 59.356 40.000 0.00 0.00 0.00 3.51
353 354 4.905429 TCTAACAGGTAGCAATGAAAGCA 58.095 39.130 0.00 0.00 0.00 3.91
354 355 5.312895 TCTAACAGGTAGCAATGAAAGCAA 58.687 37.500 0.00 0.00 0.00 3.91
355 356 3.923017 ACAGGTAGCAATGAAAGCAAC 57.077 42.857 0.00 0.00 0.00 4.17
356 357 2.558359 ACAGGTAGCAATGAAAGCAACC 59.442 45.455 0.00 0.00 0.00 3.77
357 358 2.821969 CAGGTAGCAATGAAAGCAACCT 59.178 45.455 0.00 0.00 0.00 3.50
358 359 2.821969 AGGTAGCAATGAAAGCAACCTG 59.178 45.455 0.00 0.00 0.00 4.00
359 360 2.558359 GGTAGCAATGAAAGCAACCTGT 59.442 45.455 0.00 0.00 0.00 4.00
360 361 3.366374 GGTAGCAATGAAAGCAACCTGTC 60.366 47.826 0.00 0.00 0.00 3.51
368 369 0.320771 AAGCAACCTGTCTAGTGCCG 60.321 55.000 0.00 0.00 0.00 5.69
398 399 1.737199 ACCCACCCTAAGTAGCACAA 58.263 50.000 0.00 0.00 0.00 3.33
425 426 6.316390 CCCTTACAGTAGCATCCTTACAAAAG 59.684 42.308 0.00 0.00 0.00 2.27
428 429 9.431887 CTTACAGTAGCATCCTTACAAAAGTTA 57.568 33.333 0.00 0.00 0.00 2.24
429 430 7.907214 ACAGTAGCATCCTTACAAAAGTTAG 57.093 36.000 0.00 0.00 0.00 2.34
430 431 7.676947 ACAGTAGCATCCTTACAAAAGTTAGA 58.323 34.615 0.00 0.00 0.00 2.10
488 489 7.576236 AGTTTAACATGAAAACACAGATCTCG 58.424 34.615 21.82 0.00 38.92 4.04
510 511 3.545078 GCAGCTTTTGTCGATGCAAATAG 59.455 43.478 2.44 4.87 38.05 1.73
563 564 0.973632 TCGTGGCAAGAGGAGCTTTA 59.026 50.000 0.00 0.00 33.60 1.85
564 565 1.079503 CGTGGCAAGAGGAGCTTTAC 58.920 55.000 0.00 0.00 33.60 2.01
779 801 2.684881 CCTGTCATTTACCCATCAGTGC 59.315 50.000 0.00 0.00 0.00 4.40
780 802 3.346315 CTGTCATTTACCCATCAGTGCA 58.654 45.455 0.00 0.00 0.00 4.57
782 804 3.244875 TGTCATTTACCCATCAGTGCACT 60.245 43.478 15.25 15.25 0.00 4.40
784 806 4.941263 GTCATTTACCCATCAGTGCACTAA 59.059 41.667 21.20 5.25 0.00 2.24
785 807 4.941263 TCATTTACCCATCAGTGCACTAAC 59.059 41.667 21.20 0.00 0.00 2.34
786 808 3.343941 TTACCCATCAGTGCACTAACC 57.656 47.619 21.20 0.00 0.00 2.85
788 810 1.635487 ACCCATCAGTGCACTAACCAT 59.365 47.619 21.20 6.50 0.00 3.55
789 811 2.041620 ACCCATCAGTGCACTAACCATT 59.958 45.455 21.20 0.00 0.00 3.16
791 813 3.627577 CCCATCAGTGCACTAACCATTAC 59.372 47.826 21.20 0.00 0.00 1.89
797 819 5.188948 TCAGTGCACTAACCATTACTACCAT 59.811 40.000 21.20 0.00 0.00 3.55
828 850 3.727258 ATTAGTGCCCGGCTGCCA 61.727 61.111 20.29 0.00 0.00 4.92
959 1010 4.253257 GCTCGGCCTCGTCGGTAG 62.253 72.222 0.00 0.00 37.69 3.18
960 1011 2.513204 CTCGGCCTCGTCGGTAGA 60.513 66.667 0.00 0.00 37.69 2.59
961 1012 1.892862 CTCGGCCTCGTCGGTAGAT 60.893 63.158 0.00 0.00 37.69 1.98
998 1053 2.252260 CTTGCAACGGGAAGCACG 59.748 61.111 0.00 0.00 41.05 5.34
999 1054 3.879351 CTTGCAACGGGAAGCACGC 62.879 63.158 0.00 0.00 41.05 5.34
1001 1056 3.737172 GCAACGGGAAGCACGCAT 61.737 61.111 0.00 0.00 34.00 4.73
1002 1057 2.176546 CAACGGGAAGCACGCATG 59.823 61.111 0.00 0.00 34.00 4.06
1099 1155 4.082125 CCTGCTATTTCACCTGGTTTCTT 58.918 43.478 0.00 0.00 0.00 2.52
1137 1193 0.459078 CTGCTGCTGCTACTGCTCTA 59.541 55.000 17.00 0.00 40.48 2.43
1163 1222 5.616270 TGTAGATTAGTTGTTGTGCTTGGA 58.384 37.500 0.00 0.00 0.00 3.53
1296 1356 5.461516 TGGACCATTGACCTAGTCTAGTA 57.538 43.478 6.15 0.00 33.15 1.82
1297 1357 5.446860 TGGACCATTGACCTAGTCTAGTAG 58.553 45.833 6.15 0.00 33.15 2.57
1298 1358 5.044328 TGGACCATTGACCTAGTCTAGTAGT 60.044 44.000 6.15 0.00 33.15 2.73
1517 1613 3.282885 CTCAGGTATTTTCTTCAGGGCC 58.717 50.000 0.00 0.00 0.00 5.80
1546 1642 1.080230 CCACGCTGAGGAGACACTG 60.080 63.158 0.00 0.00 0.00 3.66
1630 1731 0.467384 CTTGGACGGGAGATGCAGAT 59.533 55.000 0.00 0.00 0.00 2.90
1861 1962 3.125316 GGTAGCTCACACATGTTTGCTAC 59.875 47.826 25.31 25.31 45.76 3.58
1891 1998 3.007182 CCGGAGTAGTTGTTTGGAGGTTA 59.993 47.826 0.00 0.00 0.00 2.85
1898 2005 3.632145 AGTTGTTTGGAGGTTAACAGCAG 59.368 43.478 8.10 0.00 37.76 4.24
1928 2035 6.791867 TTAACACCACATAGCTAGAGTCAT 57.208 37.500 0.00 0.00 0.00 3.06
1931 2038 4.098654 ACACCACATAGCTAGAGTCATCAC 59.901 45.833 0.00 0.00 0.00 3.06
1974 2081 4.523943 AGCTGTGATTATGCAACCTTTTCA 59.476 37.500 0.00 0.00 0.00 2.69
1978 2085 6.389091 TGTGATTATGCAACCTTTTCATCAC 58.611 36.000 0.00 0.00 39.72 3.06
1983 2090 3.838565 TGCAACCTTTTCATCACCCTTA 58.161 40.909 0.00 0.00 0.00 2.69
1999 2106 5.721000 TCACCCTTAAATGAGGCAATTCAAT 59.279 36.000 0.00 0.00 35.37 2.57
2314 2421 0.704076 ACAGGCTTCCTAAATGGCCA 59.296 50.000 8.56 8.56 46.23 5.36
2322 2429 5.337975 GGCTTCCTAAATGGCCATTTTGTTA 60.338 40.000 40.69 26.98 43.59 2.41
2550 2659 4.443598 CCTGACCTAGTAAAGAGGATTGGC 60.444 50.000 0.00 0.00 37.53 4.52
2684 2794 5.775701 AGTGGAACAGTTATGAGTGTACTCT 59.224 40.000 12.75 0.00 40.27 3.24
2689 2799 7.309621 GGAACAGTTATGAGTGTACTCTTGGTA 60.310 40.741 12.75 0.00 43.25 3.25
3063 3178 8.031864 CCTGCCTAGTGAAATATCTACTACATG 58.968 40.741 0.00 0.00 0.00 3.21
3181 3296 2.624838 AGTTGCTGCTTGTGCTAAACAT 59.375 40.909 0.00 0.00 38.99 2.71
3240 3355 3.390135 AGAACAACACGATCATTGACGT 58.610 40.909 8.02 7.99 43.50 4.34
3390 3505 3.492313 GCTACTTGAAATCCAAACTGCG 58.508 45.455 0.00 0.00 33.76 5.18
3467 3582 3.032017 ACTGACTTCAGAATGGTGACG 57.968 47.619 13.27 0.00 46.59 4.35
3509 3624 4.251103 TCTGACTGGCTAGGAATAGACA 57.749 45.455 0.85 0.00 33.34 3.41
3727 3854 7.148171 CCCCTCTACTTTTGATCTGAATTTGTC 60.148 40.741 0.00 0.00 0.00 3.18
3850 3977 1.063806 CCGCGTAATATCAGCTGCTC 58.936 55.000 9.47 0.00 0.00 4.26
3867 3994 4.580995 GCTGCTCAGAGGTACTATCTGTAA 59.419 45.833 20.71 11.38 43.79 2.41
3890 4017 2.878406 GTGGTACTGCAACATGAAGTGT 59.122 45.455 0.00 0.00 36.76 3.55
3906 4040 7.232941 ACATGAAGTGTTTAGTACCTACTGAGT 59.767 37.037 0.00 0.00 38.01 3.41
3967 4101 0.881796 GTTGGCCCTGCAGTAACTTC 59.118 55.000 13.81 0.00 0.00 3.01
3968 4102 0.771127 TTGGCCCTGCAGTAACTTCT 59.229 50.000 13.81 0.00 0.00 2.85
3971 4105 1.813178 GGCCCTGCAGTAACTTCTTTC 59.187 52.381 13.81 0.00 0.00 2.62
4183 4319 6.655003 GGAAAGAAGGTTCATGATCTACAACA 59.345 38.462 0.00 0.00 0.00 3.33
4309 4445 7.439157 TGTCAGGAAATCACTTGTTCTATTG 57.561 36.000 0.00 0.00 0.00 1.90
4387 4523 1.174783 TCCTCGTAGCTGGAAGTCAC 58.825 55.000 0.00 0.00 35.30 3.67
4471 4610 2.536761 TTACAGCTGGTACGTGCTTT 57.463 45.000 19.93 5.75 38.57 3.51
4497 4636 1.527433 GCCTTTGGTTGCTCTGGTCC 61.527 60.000 0.00 0.00 0.00 4.46
4505 4644 2.147150 GTTGCTCTGGTCCTTGAGTTC 58.853 52.381 12.05 1.01 33.22 3.01
4549 4688 5.385509 TTTTAGATTACTGCCTGCCAAAC 57.614 39.130 0.00 0.00 0.00 2.93
4550 4689 2.887151 AGATTACTGCCTGCCAAACT 57.113 45.000 0.00 0.00 0.00 2.66
4629 4768 9.557061 GAAGTATCCCTTCGGAATATTTAAACT 57.443 33.333 0.00 0.00 43.10 2.66
4764 4907 4.094590 CCTGATGACAGCTTCATGAAGAAC 59.905 45.833 34.43 19.73 45.67 3.01
5106 5249 3.695830 TTTGGAGACCCACACTATGAC 57.304 47.619 0.00 0.00 43.41 3.06
5130 5273 1.745489 CTTCCCTTTCGGCTTCGGG 60.745 63.158 0.00 0.00 38.07 5.14
5182 5325 9.088512 GGTAAATAACTTCATCACTCACACTAG 57.911 37.037 0.00 0.00 0.00 2.57
5221 5364 5.071923 AGGCCTAGTTTGAACTACTTTCTGT 59.928 40.000 1.29 0.00 40.37 3.41
5225 5368 9.000486 GCCTAGTTTGAACTACTTTCTGTAATT 58.000 33.333 0.00 0.00 40.37 1.40
5297 5440 4.686554 CCGCGGAGATAAGAAGGAAATTAG 59.313 45.833 24.07 0.00 0.00 1.73
5309 5452 1.144298 GGAAATTAGGGTATGGGCCGT 59.856 52.381 2.58 2.58 0.00 5.68
5409 5552 3.640029 GCATGATCAATCAATCCCCTTGT 59.360 43.478 0.00 0.00 40.69 3.16
5452 5595 4.603171 TGGATATTATTCCCTGCAGATGGT 59.397 41.667 17.39 0.83 34.67 3.55
5515 5661 7.304735 TCATCAAATTATCTTTGGTTCACGTG 58.695 34.615 9.94 9.94 0.00 4.49
5516 5662 6.869315 TCAAATTATCTTTGGTTCACGTGA 57.131 33.333 15.76 15.76 0.00 4.35
5517 5663 7.447374 TCAAATTATCTTTGGTTCACGTGAT 57.553 32.000 20.80 4.00 0.00 3.06
5518 5664 7.526608 TCAAATTATCTTTGGTTCACGTGATC 58.473 34.615 20.80 18.44 0.00 2.92
5519 5665 7.174080 TCAAATTATCTTTGGTTCACGTGATCA 59.826 33.333 20.80 17.50 0.00 2.92
5520 5666 5.856126 TTATCTTTGGTTCACGTGATCAC 57.144 39.130 20.80 16.21 0.00 3.06
5545 5863 9.821662 ACGTCTTGTATTTGTTTTTAATCTAGC 57.178 29.630 0.00 0.00 0.00 3.42
5564 5882 5.884232 TCTAGCGATGAGGACAAAGTAGTAA 59.116 40.000 0.00 0.00 0.00 2.24
5565 5883 5.000012 AGCGATGAGGACAAAGTAGTAAG 58.000 43.478 0.00 0.00 0.00 2.34
5567 5885 5.361285 AGCGATGAGGACAAAGTAGTAAGAT 59.639 40.000 0.00 0.00 0.00 2.40
5571 5889 9.751542 CGATGAGGACAAAGTAGTAAGATTAAT 57.248 33.333 0.00 0.00 0.00 1.40
5626 5949 2.602211 CAGCAGTACATTCAGCTTCGAG 59.398 50.000 0.00 0.00 34.61 4.04
5703 6027 7.063780 CCTTGAAAATTCATCGGAAAATCCTTG 59.936 37.037 0.00 0.00 37.00 3.61
5732 6056 2.049228 GATGGTCTACGATTTACCGCG 58.951 52.381 0.00 0.00 35.98 6.46
5755 6079 4.507710 GAATCTGTCATAACTGTGAGGCA 58.492 43.478 0.00 0.00 0.00 4.75
5782 6106 1.873178 ATACCATGGGCAAGGTGGCA 61.873 55.000 18.09 0.00 45.76 4.92
5833 6160 1.737735 CAGCGCATCACCTTGTCGA 60.738 57.895 11.47 0.00 0.00 4.20
6131 6468 2.280592 GTGAGGTTGAACGCCGGT 60.281 61.111 1.90 0.00 0.00 5.28
6181 6518 4.874977 GCCCTCGTAGCCAGCGAC 62.875 72.222 0.00 0.00 34.47 5.19
6226 6563 1.473434 GGCCTGCTCCATGTAGTACAC 60.473 57.143 4.80 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.902261 TTGTGCTGTTTGCTGATGTAG 57.098 42.857 0.00 0.00 43.37 2.74
7 8 3.004629 CCTTTGTGCTGTTTGCTGATGTA 59.995 43.478 0.00 0.00 43.37 2.29
8 9 2.223876 CCTTTGTGCTGTTTGCTGATGT 60.224 45.455 0.00 0.00 43.37 3.06
9 10 2.400399 CCTTTGTGCTGTTTGCTGATG 58.600 47.619 0.00 0.00 43.37 3.07
10 11 1.342174 CCCTTTGTGCTGTTTGCTGAT 59.658 47.619 0.00 0.00 43.37 2.90
11 12 0.746063 CCCTTTGTGCTGTTTGCTGA 59.254 50.000 0.00 0.00 43.37 4.26
12 13 0.877213 GCCCTTTGTGCTGTTTGCTG 60.877 55.000 0.00 0.00 43.37 4.41
13 14 1.442987 GCCCTTTGTGCTGTTTGCT 59.557 52.632 0.00 0.00 43.37 3.91
14 15 1.595109 GGCCCTTTGTGCTGTTTGC 60.595 57.895 0.00 0.00 43.25 3.68
15 16 0.530431 GTGGCCCTTTGTGCTGTTTG 60.530 55.000 0.00 0.00 0.00 2.93
16 17 1.685355 GGTGGCCCTTTGTGCTGTTT 61.685 55.000 0.00 0.00 0.00 2.83
17 18 2.133641 GGTGGCCCTTTGTGCTGTT 61.134 57.895 0.00 0.00 0.00 3.16
18 19 2.521708 GGTGGCCCTTTGTGCTGT 60.522 61.111 0.00 0.00 0.00 4.40
19 20 3.673484 CGGTGGCCCTTTGTGCTG 61.673 66.667 0.00 0.00 0.00 4.41
40 41 2.383527 CCGACGAGGTTGCTCAAGC 61.384 63.158 0.00 3.81 38.96 4.01
41 42 1.738099 CCCGACGAGGTTGCTCAAG 60.738 63.158 0.00 0.00 38.74 3.02
42 43 2.342279 CCCGACGAGGTTGCTCAA 59.658 61.111 0.00 0.00 38.74 3.02
43 44 2.915659 ACCCGACGAGGTTGCTCA 60.916 61.111 0.00 0.00 36.44 4.26
49 50 1.664306 GAGTGAAACCCGACGAGGT 59.336 57.895 0.00 0.00 44.00 3.85
50 51 1.080025 GGAGTGAAACCCGACGAGG 60.080 63.158 0.00 0.00 37.80 4.63
51 52 0.388649 CTGGAGTGAAACCCGACGAG 60.389 60.000 0.00 0.00 37.80 4.18
52 53 1.663739 CTGGAGTGAAACCCGACGA 59.336 57.895 0.00 0.00 37.80 4.20
53 54 2.027625 GCTGGAGTGAAACCCGACG 61.028 63.158 0.00 0.00 37.80 5.12
54 55 1.671379 GGCTGGAGTGAAACCCGAC 60.671 63.158 0.00 0.00 37.80 4.79
55 56 2.144078 TGGCTGGAGTGAAACCCGA 61.144 57.895 0.00 0.00 37.80 5.14
56 57 1.966451 GTGGCTGGAGTGAAACCCG 60.966 63.158 0.00 0.00 37.80 5.28
57 58 1.966451 CGTGGCTGGAGTGAAACCC 60.966 63.158 0.00 0.00 37.80 4.11
58 59 1.070786 TCGTGGCTGGAGTGAAACC 59.929 57.895 0.00 0.00 37.80 3.27
59 60 0.249911 AGTCGTGGCTGGAGTGAAAC 60.250 55.000 0.00 0.00 0.00 2.78
60 61 0.249868 CAGTCGTGGCTGGAGTGAAA 60.250 55.000 7.21 0.00 37.07 2.69
61 62 1.367471 CAGTCGTGGCTGGAGTGAA 59.633 57.895 7.21 0.00 37.07 3.18
62 63 3.051210 CAGTCGTGGCTGGAGTGA 58.949 61.111 7.21 0.00 37.07 3.41
63 64 2.740055 GCAGTCGTGGCTGGAGTG 60.740 66.667 3.35 8.29 37.79 3.51
64 65 4.363990 CGCAGTCGTGGCTGGAGT 62.364 66.667 3.35 0.00 37.00 3.85
83 84 0.844503 GTCGTAACGGTCGATGCATC 59.155 55.000 17.10 17.10 39.45 3.91
84 85 0.454600 AGTCGTAACGGTCGATGCAT 59.545 50.000 0.00 0.00 39.45 3.96
85 86 0.455464 CAGTCGTAACGGTCGATGCA 60.455 55.000 0.00 0.00 39.45 3.96
86 87 0.455633 ACAGTCGTAACGGTCGATGC 60.456 55.000 0.00 0.00 39.45 3.91
87 88 1.256652 CACAGTCGTAACGGTCGATG 58.743 55.000 0.00 0.00 39.45 3.84
88 89 0.169672 CCACAGTCGTAACGGTCGAT 59.830 55.000 0.00 0.00 39.45 3.59
89 90 1.575922 CCACAGTCGTAACGGTCGA 59.424 57.895 0.00 0.00 30.93 4.20
90 91 1.443194 CCCACAGTCGTAACGGTCG 60.443 63.158 0.00 0.00 30.93 4.79
91 92 1.080298 CCCCACAGTCGTAACGGTC 60.080 63.158 0.00 0.00 30.93 4.79
92 93 2.576832 CCCCCACAGTCGTAACGGT 61.577 63.158 0.00 0.00 33.83 4.83
93 94 2.263540 CCCCCACAGTCGTAACGG 59.736 66.667 0.00 0.00 0.00 4.44
94 95 1.373748 CACCCCCACAGTCGTAACG 60.374 63.158 0.00 0.00 0.00 3.18
95 96 0.601841 CACACCCCCACAGTCGTAAC 60.602 60.000 0.00 0.00 0.00 2.50
96 97 1.049855 ACACACCCCCACAGTCGTAA 61.050 55.000 0.00 0.00 0.00 3.18
97 98 1.458020 ACACACCCCCACAGTCGTA 60.458 57.895 0.00 0.00 0.00 3.43
98 99 2.766651 ACACACCCCCACAGTCGT 60.767 61.111 0.00 0.00 0.00 4.34
99 100 2.030562 GACACACCCCCACAGTCG 59.969 66.667 0.00 0.00 0.00 4.18
100 101 2.430367 GGACACACCCCCACAGTC 59.570 66.667 0.00 0.00 0.00 3.51
101 102 3.556306 CGGACACACCCCCACAGT 61.556 66.667 0.00 0.00 34.64 3.55
102 103 3.530910 GACGGACACACCCCCACAG 62.531 68.421 0.00 0.00 34.64 3.66
103 104 3.552384 GACGGACACACCCCCACA 61.552 66.667 0.00 0.00 34.64 4.17
104 105 4.675029 CGACGGACACACCCCCAC 62.675 72.222 0.00 0.00 34.64 4.61
108 109 4.309950 AAGCCGACGGACACACCC 62.310 66.667 20.50 0.00 34.64 4.61
109 110 3.041940 CAAGCCGACGGACACACC 61.042 66.667 20.50 0.00 0.00 4.16
110 111 3.712881 GCAAGCCGACGGACACAC 61.713 66.667 20.50 0.00 0.00 3.82
111 112 4.980805 GGCAAGCCGACGGACACA 62.981 66.667 20.50 0.00 0.00 3.72
112 113 4.681978 AGGCAAGCCGACGGACAC 62.682 66.667 20.50 0.00 41.95 3.67
113 114 3.469863 AAAGGCAAGCCGACGGACA 62.470 57.895 20.50 0.00 41.95 4.02
114 115 2.668550 AAAGGCAAGCCGACGGAC 60.669 61.111 20.50 9.27 41.95 4.79
115 116 2.668212 CAAAGGCAAGCCGACGGA 60.668 61.111 20.50 0.00 41.95 4.69
116 117 3.737172 CCAAAGGCAAGCCGACGG 61.737 66.667 10.29 10.29 41.95 4.79
117 118 1.586154 AATCCAAAGGCAAGCCGACG 61.586 55.000 5.28 0.00 41.95 5.12
118 119 0.171231 GAATCCAAAGGCAAGCCGAC 59.829 55.000 5.28 0.00 41.95 4.79
119 120 0.038166 AGAATCCAAAGGCAAGCCGA 59.962 50.000 5.28 0.00 41.95 5.54
120 121 0.890683 AAGAATCCAAAGGCAAGCCG 59.109 50.000 5.28 0.00 41.95 5.52
121 122 2.165234 GAGAAGAATCCAAAGGCAAGCC 59.835 50.000 2.02 2.02 0.00 4.35
122 123 2.165234 GGAGAAGAATCCAAAGGCAAGC 59.835 50.000 0.00 0.00 39.34 4.01
123 124 3.424703 TGGAGAAGAATCCAAAGGCAAG 58.575 45.455 0.00 0.00 46.45 4.01
124 125 3.524095 TGGAGAAGAATCCAAAGGCAA 57.476 42.857 0.00 0.00 46.45 4.52
132 133 2.159170 CGGTGAGACTGGAGAAGAATCC 60.159 54.545 0.00 0.00 40.03 3.01
133 134 2.494073 ACGGTGAGACTGGAGAAGAATC 59.506 50.000 0.00 0.00 0.00 2.52
134 135 2.494073 GACGGTGAGACTGGAGAAGAAT 59.506 50.000 0.00 0.00 0.00 2.40
135 136 1.887198 GACGGTGAGACTGGAGAAGAA 59.113 52.381 0.00 0.00 0.00 2.52
136 137 1.074084 AGACGGTGAGACTGGAGAAGA 59.926 52.381 0.00 0.00 0.00 2.87
137 138 1.201181 CAGACGGTGAGACTGGAGAAG 59.799 57.143 0.00 0.00 38.63 2.85
138 139 1.248486 CAGACGGTGAGACTGGAGAA 58.752 55.000 0.00 0.00 38.63 2.87
139 140 1.244697 GCAGACGGTGAGACTGGAGA 61.245 60.000 0.00 0.00 41.73 3.71
140 141 1.214062 GCAGACGGTGAGACTGGAG 59.786 63.158 0.00 0.00 41.73 3.86
141 142 2.626780 CGCAGACGGTGAGACTGGA 61.627 63.158 0.00 0.00 41.73 3.86
142 143 2.126307 CGCAGACGGTGAGACTGG 60.126 66.667 0.00 0.00 41.73 4.00
143 144 1.442857 GACGCAGACGGTGAGACTG 60.443 63.158 0.00 0.00 46.04 3.51
144 145 1.897137 TGACGCAGACGGTGAGACT 60.897 57.895 0.00 0.00 46.04 3.24
145 146 1.729838 GTGACGCAGACGGTGAGAC 60.730 63.158 0.00 0.00 46.04 3.36
146 147 0.604511 TAGTGACGCAGACGGTGAGA 60.605 55.000 0.00 0.00 46.04 3.27
147 148 0.454620 GTAGTGACGCAGACGGTGAG 60.455 60.000 0.00 0.00 46.04 3.51
148 149 1.577922 GTAGTGACGCAGACGGTGA 59.422 57.895 0.00 0.00 46.04 4.02
149 150 1.443872 GGTAGTGACGCAGACGGTG 60.444 63.158 0.00 0.00 46.04 4.94
150 151 1.177256 AAGGTAGTGACGCAGACGGT 61.177 55.000 0.00 0.00 46.04 4.83
151 152 0.038526 AAAGGTAGTGACGCAGACGG 60.039 55.000 0.00 0.00 46.04 4.79
153 154 0.790814 GCAAAGGTAGTGACGCAGAC 59.209 55.000 0.00 0.00 0.00 3.51
154 155 0.666274 CGCAAAGGTAGTGACGCAGA 60.666 55.000 0.00 0.00 0.00 4.26
155 156 0.666274 TCGCAAAGGTAGTGACGCAG 60.666 55.000 0.00 0.00 0.00 5.18
156 157 0.942410 GTCGCAAAGGTAGTGACGCA 60.942 55.000 0.00 0.00 36.86 5.24
157 158 1.779683 GTCGCAAAGGTAGTGACGC 59.220 57.895 0.00 0.00 36.86 5.19
159 160 0.790814 GCAGTCGCAAAGGTAGTGAC 59.209 55.000 0.00 0.00 44.60 3.67
160 161 0.666274 CGCAGTCGCAAAGGTAGTGA 60.666 55.000 0.00 0.00 38.40 3.41
161 162 1.626654 CCGCAGTCGCAAAGGTAGTG 61.627 60.000 0.00 0.00 38.40 2.74
162 163 1.374252 CCGCAGTCGCAAAGGTAGT 60.374 57.895 0.00 0.00 38.40 2.73
163 164 2.100631 CCCGCAGTCGCAAAGGTAG 61.101 63.158 0.00 0.00 38.40 3.18
164 165 2.047655 CCCGCAGTCGCAAAGGTA 60.048 61.111 0.00 0.00 38.40 3.08
180 181 5.584551 AATCCTTATACTCAACATCCCCC 57.415 43.478 0.00 0.00 0.00 5.40
181 182 9.892130 CTAATAATCCTTATACTCAACATCCCC 57.108 37.037 0.00 0.00 0.00 4.81
182 183 9.892130 CCTAATAATCCTTATACTCAACATCCC 57.108 37.037 0.00 0.00 0.00 3.85
210 211 9.482175 GGACCAAATCCTAGTCTATCATATACT 57.518 37.037 0.00 0.00 45.22 2.12
227 228 2.206576 AGACAAGGCAGGACCAAATC 57.793 50.000 0.00 0.00 43.14 2.17
228 229 2.242043 CAAGACAAGGCAGGACCAAAT 58.758 47.619 0.00 0.00 43.14 2.32
229 230 1.064017 ACAAGACAAGGCAGGACCAAA 60.064 47.619 0.00 0.00 43.14 3.28
230 231 0.550914 ACAAGACAAGGCAGGACCAA 59.449 50.000 0.00 0.00 43.14 3.67
231 232 1.071699 GTACAAGACAAGGCAGGACCA 59.928 52.381 0.00 0.00 43.14 4.02
232 233 1.348036 AGTACAAGACAAGGCAGGACC 59.652 52.381 0.00 0.00 39.61 4.46
233 234 2.300437 AGAGTACAAGACAAGGCAGGAC 59.700 50.000 0.00 0.00 0.00 3.85
234 235 2.609747 AGAGTACAAGACAAGGCAGGA 58.390 47.619 0.00 0.00 0.00 3.86
235 236 4.021016 ACTTAGAGTACAAGACAAGGCAGG 60.021 45.833 0.00 0.00 0.00 4.85
236 237 5.140747 ACTTAGAGTACAAGACAAGGCAG 57.859 43.478 0.00 0.00 0.00 4.85
237 238 5.297547 CAACTTAGAGTACAAGACAAGGCA 58.702 41.667 0.00 0.00 0.00 4.75
238 239 4.691216 CCAACTTAGAGTACAAGACAAGGC 59.309 45.833 0.00 0.00 0.00 4.35
239 240 5.855045 ACCAACTTAGAGTACAAGACAAGG 58.145 41.667 0.00 0.00 0.00 3.61
240 241 6.750148 AGACCAACTTAGAGTACAAGACAAG 58.250 40.000 0.00 0.00 0.00 3.16
241 242 6.726490 AGACCAACTTAGAGTACAAGACAA 57.274 37.500 0.00 0.00 0.00 3.18
242 243 6.726490 AAGACCAACTTAGAGTACAAGACA 57.274 37.500 0.00 0.00 37.03 3.41
243 244 6.985059 ACAAAGACCAACTTAGAGTACAAGAC 59.015 38.462 0.00 0.00 37.93 3.01
244 245 7.120923 ACAAAGACCAACTTAGAGTACAAGA 57.879 36.000 0.00 0.00 37.93 3.02
245 246 8.142551 AGTACAAAGACCAACTTAGAGTACAAG 58.857 37.037 2.59 0.00 40.17 3.16
246 247 8.015185 AGTACAAAGACCAACTTAGAGTACAA 57.985 34.615 2.59 0.00 40.17 2.41
247 248 7.255730 GGAGTACAAAGACCAACTTAGAGTACA 60.256 40.741 2.59 0.00 40.17 2.90
248 249 7.039853 AGGAGTACAAAGACCAACTTAGAGTAC 60.040 40.741 0.00 0.00 39.24 2.73
249 250 7.008941 AGGAGTACAAAGACCAACTTAGAGTA 58.991 38.462 0.00 0.00 37.93 2.59
250 251 5.839606 AGGAGTACAAAGACCAACTTAGAGT 59.160 40.000 0.00 0.00 37.93 3.24
251 252 6.347859 AGGAGTACAAAGACCAACTTAGAG 57.652 41.667 0.00 0.00 37.93 2.43
252 253 9.710818 ATATAGGAGTACAAAGACCAACTTAGA 57.289 33.333 0.00 0.00 37.93 2.10
258 259 9.317827 GGGTATATATAGGAGTACAAAGACCAA 57.682 37.037 0.00 0.00 0.00 3.67
259 260 8.458575 TGGGTATATATAGGAGTACAAAGACCA 58.541 37.037 0.00 0.00 0.00 4.02
260 261 8.747471 GTGGGTATATATAGGAGTACAAAGACC 58.253 40.741 0.00 0.00 0.00 3.85
261 262 8.457261 CGTGGGTATATATAGGAGTACAAAGAC 58.543 40.741 0.00 0.00 0.00 3.01
262 263 8.385491 TCGTGGGTATATATAGGAGTACAAAGA 58.615 37.037 0.00 0.00 0.00 2.52
263 264 8.571461 TCGTGGGTATATATAGGAGTACAAAG 57.429 38.462 0.00 0.00 0.00 2.77
264 265 8.385491 TCTCGTGGGTATATATAGGAGTACAAA 58.615 37.037 0.00 0.00 0.00 2.83
265 266 7.826252 GTCTCGTGGGTATATATAGGAGTACAA 59.174 40.741 0.00 0.00 0.00 2.41
266 267 7.181665 AGTCTCGTGGGTATATATAGGAGTACA 59.818 40.741 0.00 0.00 0.00 2.90
267 268 7.563906 AGTCTCGTGGGTATATATAGGAGTAC 58.436 42.308 0.00 0.00 0.00 2.73
268 269 7.401204 TGAGTCTCGTGGGTATATATAGGAGTA 59.599 40.741 0.00 0.00 0.00 2.59
269 270 6.215023 TGAGTCTCGTGGGTATATATAGGAGT 59.785 42.308 0.00 0.00 0.00 3.85
270 271 6.651086 TGAGTCTCGTGGGTATATATAGGAG 58.349 44.000 0.00 0.00 0.00 3.69
271 272 6.631763 TGAGTCTCGTGGGTATATATAGGA 57.368 41.667 0.00 0.00 0.00 2.94
272 273 6.183360 GCTTGAGTCTCGTGGGTATATATAGG 60.183 46.154 0.00 0.00 0.00 2.57
273 274 6.374613 TGCTTGAGTCTCGTGGGTATATATAG 59.625 42.308 0.00 0.00 0.00 1.31
274 275 6.243148 TGCTTGAGTCTCGTGGGTATATATA 58.757 40.000 0.00 0.00 0.00 0.86
275 276 5.077564 TGCTTGAGTCTCGTGGGTATATAT 58.922 41.667 0.00 0.00 0.00 0.86
276 277 4.466827 TGCTTGAGTCTCGTGGGTATATA 58.533 43.478 0.00 0.00 0.00 0.86
277 278 3.296854 TGCTTGAGTCTCGTGGGTATAT 58.703 45.455 0.00 0.00 0.00 0.86
278 279 2.730382 TGCTTGAGTCTCGTGGGTATA 58.270 47.619 0.00 0.00 0.00 1.47
279 280 1.557099 TGCTTGAGTCTCGTGGGTAT 58.443 50.000 0.00 0.00 0.00 2.73
280 281 1.334160 TTGCTTGAGTCTCGTGGGTA 58.666 50.000 0.00 0.00 0.00 3.69
281 282 0.687354 ATTGCTTGAGTCTCGTGGGT 59.313 50.000 0.00 0.00 0.00 4.51
282 283 2.271800 GTATTGCTTGAGTCTCGTGGG 58.728 52.381 0.00 0.00 0.00 4.61
283 284 2.959516 TGTATTGCTTGAGTCTCGTGG 58.040 47.619 0.00 0.00 0.00 4.94
284 285 6.647212 TTATTGTATTGCTTGAGTCTCGTG 57.353 37.500 0.00 0.00 0.00 4.35
285 286 6.874134 AGTTTATTGTATTGCTTGAGTCTCGT 59.126 34.615 0.00 0.00 0.00 4.18
286 287 7.295952 AGTTTATTGTATTGCTTGAGTCTCG 57.704 36.000 0.00 0.00 0.00 4.04
289 290 9.937175 GGAATAGTTTATTGTATTGCTTGAGTC 57.063 33.333 0.00 0.00 0.00 3.36
290 291 9.461312 TGGAATAGTTTATTGTATTGCTTGAGT 57.539 29.630 0.00 0.00 30.55 3.41
291 292 9.722056 GTGGAATAGTTTATTGTATTGCTTGAG 57.278 33.333 0.00 0.00 30.55 3.02
292 293 8.682710 GGTGGAATAGTTTATTGTATTGCTTGA 58.317 33.333 0.00 0.00 30.55 3.02
293 294 8.465999 TGGTGGAATAGTTTATTGTATTGCTTG 58.534 33.333 0.00 0.00 30.55 4.01
294 295 8.588290 TGGTGGAATAGTTTATTGTATTGCTT 57.412 30.769 0.00 0.00 30.55 3.91
295 296 8.588290 TTGGTGGAATAGTTTATTGTATTGCT 57.412 30.769 0.00 0.00 30.55 3.91
296 297 9.463443 GATTGGTGGAATAGTTTATTGTATTGC 57.537 33.333 0.00 0.00 0.00 3.56
297 298 9.965824 GGATTGGTGGAATAGTTTATTGTATTG 57.034 33.333 0.00 0.00 0.00 1.90
298 299 9.936329 AGGATTGGTGGAATAGTTTATTGTATT 57.064 29.630 0.00 0.00 0.00 1.89
299 300 9.574516 GAGGATTGGTGGAATAGTTTATTGTAT 57.425 33.333 0.00 0.00 0.00 2.29
300 301 8.778059 AGAGGATTGGTGGAATAGTTTATTGTA 58.222 33.333 0.00 0.00 0.00 2.41
301 302 7.643123 AGAGGATTGGTGGAATAGTTTATTGT 58.357 34.615 0.00 0.00 0.00 2.71
302 303 7.995488 AGAGAGGATTGGTGGAATAGTTTATTG 59.005 37.037 0.00 0.00 0.00 1.90
303 304 8.107196 AGAGAGGATTGGTGGAATAGTTTATT 57.893 34.615 0.00 0.00 0.00 1.40
304 305 7.570607 AGAGAGAGGATTGGTGGAATAGTTTAT 59.429 37.037 0.00 0.00 0.00 1.40
305 306 6.903534 AGAGAGAGGATTGGTGGAATAGTTTA 59.096 38.462 0.00 0.00 0.00 2.01
306 307 5.728741 AGAGAGAGGATTGGTGGAATAGTTT 59.271 40.000 0.00 0.00 0.00 2.66
307 308 5.284582 AGAGAGAGGATTGGTGGAATAGTT 58.715 41.667 0.00 0.00 0.00 2.24
308 309 4.889780 AGAGAGAGGATTGGTGGAATAGT 58.110 43.478 0.00 0.00 0.00 2.12
309 310 5.602145 AGAAGAGAGAGGATTGGTGGAATAG 59.398 44.000 0.00 0.00 0.00 1.73
310 311 5.533112 AGAAGAGAGAGGATTGGTGGAATA 58.467 41.667 0.00 0.00 0.00 1.75
311 312 4.369872 AGAAGAGAGAGGATTGGTGGAAT 58.630 43.478 0.00 0.00 0.00 3.01
312 313 3.796111 AGAAGAGAGAGGATTGGTGGAA 58.204 45.455 0.00 0.00 0.00 3.53
313 314 3.481559 AGAAGAGAGAGGATTGGTGGA 57.518 47.619 0.00 0.00 0.00 4.02
314 315 4.467795 TGTTAGAAGAGAGAGGATTGGTGG 59.532 45.833 0.00 0.00 0.00 4.61
315 316 5.395103 CCTGTTAGAAGAGAGAGGATTGGTG 60.395 48.000 0.00 0.00 0.00 4.17
316 317 4.714308 CCTGTTAGAAGAGAGAGGATTGGT 59.286 45.833 0.00 0.00 0.00 3.67
317 318 4.714308 ACCTGTTAGAAGAGAGAGGATTGG 59.286 45.833 0.00 0.00 31.20 3.16
318 319 5.930837 ACCTGTTAGAAGAGAGAGGATTG 57.069 43.478 0.00 0.00 31.20 2.67
319 320 5.596772 GCTACCTGTTAGAAGAGAGAGGATT 59.403 44.000 0.00 0.00 31.20 3.01
320 321 5.137551 GCTACCTGTTAGAAGAGAGAGGAT 58.862 45.833 0.00 0.00 31.20 3.24
321 322 4.018324 TGCTACCTGTTAGAAGAGAGAGGA 60.018 45.833 0.00 0.00 31.20 3.71
322 323 4.274147 TGCTACCTGTTAGAAGAGAGAGG 58.726 47.826 0.00 0.00 32.84 3.69
323 324 5.906113 TTGCTACCTGTTAGAAGAGAGAG 57.094 43.478 0.00 0.00 0.00 3.20
324 325 5.952347 TCATTGCTACCTGTTAGAAGAGAGA 59.048 40.000 0.00 0.00 0.00 3.10
325 326 6.214191 TCATTGCTACCTGTTAGAAGAGAG 57.786 41.667 0.00 0.00 0.00 3.20
326 327 6.605471 TTCATTGCTACCTGTTAGAAGAGA 57.395 37.500 0.00 0.00 0.00 3.10
327 328 6.183360 GCTTTCATTGCTACCTGTTAGAAGAG 60.183 42.308 0.00 0.00 0.00 2.85
328 329 5.643777 GCTTTCATTGCTACCTGTTAGAAGA 59.356 40.000 0.00 0.00 0.00 2.87
329 330 5.412594 TGCTTTCATTGCTACCTGTTAGAAG 59.587 40.000 0.00 0.00 0.00 2.85
330 331 5.312895 TGCTTTCATTGCTACCTGTTAGAA 58.687 37.500 0.00 0.00 0.00 2.10
331 332 4.905429 TGCTTTCATTGCTACCTGTTAGA 58.095 39.130 0.00 0.00 0.00 2.10
332 333 5.393962 GTTGCTTTCATTGCTACCTGTTAG 58.606 41.667 0.00 0.00 31.84 2.34
333 334 5.371115 GTTGCTTTCATTGCTACCTGTTA 57.629 39.130 0.00 0.00 31.84 2.41
334 335 4.243007 GTTGCTTTCATTGCTACCTGTT 57.757 40.909 0.00 0.00 31.84 3.16
335 336 3.923017 GTTGCTTTCATTGCTACCTGT 57.077 42.857 0.00 0.00 31.84 4.00
339 340 3.503748 AGACAGGTTGCTTTCATTGCTAC 59.496 43.478 0.00 0.00 35.92 3.58
340 341 3.754965 AGACAGGTTGCTTTCATTGCTA 58.245 40.909 0.00 0.00 0.00 3.49
341 342 2.590821 AGACAGGTTGCTTTCATTGCT 58.409 42.857 0.00 0.00 0.00 3.91
342 343 3.503748 ACTAGACAGGTTGCTTTCATTGC 59.496 43.478 0.00 0.00 0.00 3.56
343 344 4.614535 GCACTAGACAGGTTGCTTTCATTG 60.615 45.833 0.00 0.00 0.00 2.82
344 345 3.503748 GCACTAGACAGGTTGCTTTCATT 59.496 43.478 0.00 0.00 0.00 2.57
345 346 3.077359 GCACTAGACAGGTTGCTTTCAT 58.923 45.455 0.00 0.00 0.00 2.57
346 347 2.494059 GCACTAGACAGGTTGCTTTCA 58.506 47.619 0.00 0.00 0.00 2.69
347 348 1.807142 GGCACTAGACAGGTTGCTTTC 59.193 52.381 0.00 0.00 0.00 2.62
348 349 1.878102 CGGCACTAGACAGGTTGCTTT 60.878 52.381 0.00 0.00 0.00 3.51
349 350 0.320771 CGGCACTAGACAGGTTGCTT 60.321 55.000 0.00 0.00 0.00 3.91
350 351 1.293498 CGGCACTAGACAGGTTGCT 59.707 57.895 0.00 0.00 0.00 3.91
351 352 1.004918 ACGGCACTAGACAGGTTGC 60.005 57.895 0.00 0.00 0.00 4.17
352 353 0.603569 AGACGGCACTAGACAGGTTG 59.396 55.000 0.00 0.00 0.00 3.77
353 354 2.211250 TAGACGGCACTAGACAGGTT 57.789 50.000 0.00 0.00 0.00 3.50
354 355 1.817447 GTTAGACGGCACTAGACAGGT 59.183 52.381 0.00 0.00 0.00 4.00
355 356 1.816835 TGTTAGACGGCACTAGACAGG 59.183 52.381 0.00 0.00 0.00 4.00
356 357 3.570926 TTGTTAGACGGCACTAGACAG 57.429 47.619 0.00 0.00 0.00 3.51
357 358 4.325028 TTTTGTTAGACGGCACTAGACA 57.675 40.909 0.00 0.00 0.00 3.41
358 359 4.084171 GGTTTTTGTTAGACGGCACTAGAC 60.084 45.833 0.00 0.00 0.00 2.59
359 360 4.060205 GGTTTTTGTTAGACGGCACTAGA 58.940 43.478 0.00 0.00 0.00 2.43
360 361 3.187842 GGGTTTTTGTTAGACGGCACTAG 59.812 47.826 0.00 0.00 0.00 2.57
368 369 5.135383 ACTTAGGGTGGGTTTTTGTTAGAC 58.865 41.667 0.00 0.00 0.00 2.59
398 399 4.781087 TGTAAGGATGCTACTGTAAGGGTT 59.219 41.667 0.00 0.00 39.30 4.11
488 489 1.769733 TTTGCATCGACAAAAGCTGC 58.230 45.000 0.00 0.00 36.62 5.25
752 769 0.683179 GGGTAAATGACAGGGTGGGC 60.683 60.000 0.00 0.00 0.00 5.36
779 801 5.454755 CCAGGGATGGTAGTAATGGTTAGTG 60.455 48.000 0.00 0.00 0.00 2.74
780 802 4.658901 CCAGGGATGGTAGTAATGGTTAGT 59.341 45.833 0.00 0.00 0.00 2.24
782 804 4.637600 ACCAGGGATGGTAGTAATGGTTA 58.362 43.478 0.00 0.00 41.04 2.85
784 806 3.046374 GACCAGGGATGGTAGTAATGGT 58.954 50.000 0.00 0.00 43.24 3.55
785 807 3.071602 CAGACCAGGGATGGTAGTAATGG 59.928 52.174 0.00 0.00 43.24 3.16
786 808 3.071602 CCAGACCAGGGATGGTAGTAATG 59.928 52.174 0.00 0.00 43.24 1.90
788 810 2.045326 ACCAGACCAGGGATGGTAGTAA 59.955 50.000 14.78 0.00 45.44 2.24
789 811 1.649633 ACCAGACCAGGGATGGTAGTA 59.350 52.381 14.78 0.00 45.44 1.82
791 813 3.324246 ACCAGACCAGGGATGGTAG 57.676 57.895 14.78 0.00 45.44 3.18
797 819 2.187958 CACTAATGACCAGACCAGGGA 58.812 52.381 0.00 0.00 0.00 4.20
958 1009 1.953686 GAGCTCACTCGCCTTCTATCT 59.046 52.381 9.40 0.00 32.04 1.98
959 1010 2.415697 GAGCTCACTCGCCTTCTATC 57.584 55.000 9.40 0.00 32.04 2.08
1077 1132 3.690460 AGAAACCAGGTGAAATAGCAGG 58.310 45.455 0.00 0.00 39.18 4.85
1099 1155 2.529643 TGGGGGCGGTGGTTAAGA 60.530 61.111 0.00 0.00 0.00 2.10
1137 1193 6.017109 CCAAGCACAACAACTAATCTACAACT 60.017 38.462 0.00 0.00 0.00 3.16
1186 1245 1.827399 ATGGCCCCGTAGAATAGCCG 61.827 60.000 0.00 0.00 46.92 5.52
1194 1253 0.541863 ACAAGAGAATGGCCCCGTAG 59.458 55.000 0.00 0.00 0.00 3.51
1325 1386 5.169992 TGATGATTCACTCCATTGTCAGT 57.830 39.130 0.00 0.00 0.00 3.41
1365 1427 7.362401 GCAAGGAAAGAAGAGCTAAATTGATGA 60.362 37.037 0.00 0.00 0.00 2.92
1423 1485 1.499007 ACAGAGGGGTTTGGACATTGT 59.501 47.619 0.00 0.00 0.00 2.71
1546 1642 4.759183 GGGCATACCATCTCTGAAAATCTC 59.241 45.833 0.00 0.00 39.85 2.75
1563 1661 1.540267 CCAAGAAACGTTGGGGCATA 58.460 50.000 0.00 0.00 43.02 3.14
1630 1731 6.374333 GCTTTGGATCCTTGTACTTCATGTAA 59.626 38.462 14.23 0.00 32.25 2.41
1861 1962 0.179073 CAACTACTCCGGATGCAGGG 60.179 60.000 3.57 0.00 0.00 4.45
1898 2005 5.629079 AGCTATGTGGTGTTAAAGCTTTC 57.371 39.130 16.57 2.63 36.98 2.62
1974 2081 5.271598 TGAATTGCCTCATTTAAGGGTGAT 58.728 37.500 0.00 0.00 36.88 3.06
1978 2085 7.333323 AGAAATTGAATTGCCTCATTTAAGGG 58.667 34.615 0.00 0.00 36.88 3.95
1983 2090 7.989170 GGGATTAGAAATTGAATTGCCTCATTT 59.011 33.333 0.00 0.00 0.00 2.32
2322 2429 6.203338 CAGCCAAGCACTGTCATTTTATTTTT 59.797 34.615 0.00 0.00 0.00 1.94
2335 2442 2.049433 GCAAGCAGCCAAGCACTG 60.049 61.111 0.00 0.00 37.23 3.66
2913 3026 5.674525 CCTACAGATTGGCTCACATCTTAA 58.325 41.667 0.00 0.00 0.00 1.85
3042 3157 9.613957 CGAACCATGTAGTAGATATTTCACTAG 57.386 37.037 0.00 0.00 0.00 2.57
3063 3178 3.672767 TCCCTAAACTGTTCTCGAACC 57.327 47.619 7.28 0.00 40.46 3.62
3147 3262 6.040391 ACAAGCAGCAACTTTATTCCTGTAAA 59.960 34.615 0.00 0.00 0.00 2.01
3149 3264 5.048782 CACAAGCAGCAACTTTATTCCTGTA 60.049 40.000 0.00 0.00 0.00 2.74
3181 3296 1.950909 GTTCCACCATCACCAACGAAA 59.049 47.619 0.00 0.00 0.00 3.46
3390 3505 4.269844 GCAGATTAGCACTAACTCTGAAGC 59.730 45.833 21.30 10.94 35.34 3.86
3467 3582 4.646492 AGATATCACAAAACCCTGCAATCC 59.354 41.667 5.32 0.00 0.00 3.01
3680 3807 3.118038 GGTATGTTATGGGCACTTCTCCA 60.118 47.826 0.00 0.00 37.46 3.86
3727 3854 4.196193 TGGAGTCCAAACTAATTATGCGG 58.804 43.478 10.20 0.00 35.28 5.69
3830 3957 0.946221 AGCAGCTGATATTACGCGGC 60.946 55.000 20.43 0.36 43.53 6.53
3850 3977 6.716934 ACCACATTACAGATAGTACCTCTG 57.283 41.667 17.31 17.31 44.60 3.35
3867 3994 3.503363 CACTTCATGTTGCAGTACCACAT 59.497 43.478 0.00 0.00 0.00 3.21
3890 4017 5.939883 TCGTTGCTACTCAGTAGGTACTAAA 59.060 40.000 13.95 0.00 45.48 1.85
3906 4040 6.809689 TCGATTAAAAATCAGAGTCGTTGCTA 59.190 34.615 1.01 0.00 0.00 3.49
4239 4375 9.290988 TGTGCTCCTGTTAAATTTAATTACTCA 57.709 29.630 13.54 6.07 0.00 3.41
4309 4445 6.024552 TGATTAGGAGTGTTGCCATTTTTC 57.975 37.500 0.00 0.00 0.00 2.29
4471 4610 4.402155 CCAGAGCAACCAAAGGCATATTAA 59.598 41.667 0.00 0.00 0.00 1.40
4549 4688 4.837093 TCTGTTCCAACCAGGGTATAAG 57.163 45.455 0.00 0.00 38.24 1.73
4550 4689 4.080015 CCATCTGTTCCAACCAGGGTATAA 60.080 45.833 0.00 0.00 38.24 0.98
4629 4768 7.089538 TGACCGTCAAAGTTATATAAACGTCA 58.910 34.615 12.98 12.76 0.00 4.35
4643 4784 8.970691 AAAGAATAAAATCATGACCGTCAAAG 57.029 30.769 5.07 1.71 0.00 2.77
4660 4801 8.477419 AGGATTGTTGTTCCTGAAAAGAATAA 57.523 30.769 0.00 0.00 42.11 1.40
4764 4907 6.991485 ACAATAGCAAATGAAAACTCGTTG 57.009 33.333 0.00 0.00 0.00 4.10
4929 5072 6.430308 CCATCAGAGGAAGATATGGTTCAATG 59.570 42.308 0.00 0.00 33.81 2.82
5130 5273 4.168760 GCTGTGATGAATTTACTGCCAAC 58.831 43.478 0.00 0.00 34.48 3.77
5182 5325 2.162681 AGGCCTGTAGCATTGTTTCAC 58.837 47.619 3.11 0.00 46.50 3.18
5221 5364 9.554724 GCAAACAAGACGAAAGATATCAAATTA 57.445 29.630 5.32 0.00 0.00 1.40
5225 5368 5.390461 CGGCAAACAAGACGAAAGATATCAA 60.390 40.000 5.32 0.00 44.57 2.57
5297 5440 1.451387 CTCAACACGGCCCATACCC 60.451 63.158 0.00 0.00 0.00 3.69
5309 5452 5.122519 TCATTGACAGTAGCAAACTCAACA 58.877 37.500 0.00 0.00 35.76 3.33
5409 5552 2.352561 TGTGGACCAAGGATCCCTAA 57.647 50.000 8.55 0.00 35.12 2.69
5437 5580 3.559069 CATAACACCATCTGCAGGGAAT 58.441 45.455 15.13 0.00 0.00 3.01
5452 5595 4.038763 CCGATGACCTAGGTTAGCATAACA 59.961 45.833 20.49 10.02 0.00 2.41
5519 5665 9.821662 GCTAGATTAAAAACAAATACAAGACGT 57.178 29.630 0.00 0.00 0.00 4.34
5520 5666 8.985694 CGCTAGATTAAAAACAAATACAAGACG 58.014 33.333 0.00 0.00 0.00 4.18
5545 5863 9.751542 ATTAATCTTACTACTTTGTCCTCATCG 57.248 33.333 0.00 0.00 0.00 3.84
5564 5882 8.806146 ACAGGACTTGCATGTTTTAATTAATCT 58.194 29.630 6.70 0.00 38.59 2.40
5565 5883 8.986477 ACAGGACTTGCATGTTTTAATTAATC 57.014 30.769 6.70 0.00 38.59 1.75
5626 5949 8.483307 AGGAAATTTATGTGCAATGATTCAAC 57.517 30.769 0.00 0.00 0.00 3.18
5732 6056 3.873952 GCCTCACAGTTATGACAGATTCC 59.126 47.826 0.00 0.00 0.00 3.01
5755 6079 3.392616 CCTTGCCCATGGTATTCTCTACT 59.607 47.826 11.73 0.00 0.00 2.57
6181 6518 4.394078 TGTCGTTCTCCGTCGGCG 62.394 66.667 6.34 0.29 37.94 6.46
6226 6563 2.793946 CGCTCATGCTTTTCCCCG 59.206 61.111 0.00 0.00 36.97 5.73
6257 6594 5.507985 GCTCTTGTTGCTTGTGGTATTTTCT 60.508 40.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.