Multiple sequence alignment - TraesCS3A01G295300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G295300 chr3A 100.000 5295 0 0 1 5295 529219107 529213813 0.000000e+00 9779.0
1 TraesCS3A01G295300 chr3A 100.000 32 0 0 3197 3228 529215782 529215751 5.730000e-05 60.2
2 TraesCS3A01G295300 chr3A 100.000 32 0 0 3326 3357 529215911 529215880 5.730000e-05 60.2
3 TraesCS3A01G295300 chr3D 92.750 2869 118 39 23 2858 421657037 421659848 0.000000e+00 4063.0
4 TraesCS3A01G295300 chr3D 97.100 1276 32 2 3326 4597 421660128 421661402 0.000000e+00 2146.0
5 TraesCS3A01G295300 chr3D 88.649 696 42 10 4601 5295 421662009 421662668 0.000000e+00 813.0
6 TraesCS3A01G295300 chr3D 95.223 314 12 1 2915 3228 421659849 421660159 1.320000e-135 494.0
7 TraesCS3A01G295300 chr3B 95.369 1274 51 5 3326 4597 548887139 548888406 0.000000e+00 2019.0
8 TraesCS3A01G295300 chr3B 93.610 1158 43 13 1681 2819 548885833 548886978 0.000000e+00 1700.0
9 TraesCS3A01G295300 chr3B 94.906 903 24 6 748 1649 548884957 548885838 0.000000e+00 1393.0
10 TraesCS3A01G295300 chr3B 85.224 758 74 21 23 761 548954715 548955453 0.000000e+00 745.0
11 TraesCS3A01G295300 chr3B 85.637 369 46 6 4601 4968 549022155 549022517 1.080000e-101 381.0
12 TraesCS3A01G295300 chr3B 95.855 193 8 0 3036 3228 548886978 548887170 3.980000e-81 313.0
13 TraesCS3A01G295300 chr3B 96.262 107 4 0 3228 3334 810951029 810951135 5.450000e-40 176.0
14 TraesCS3A01G295300 chr3B 94.643 112 5 1 3228 3339 106897691 106897581 7.050000e-39 172.0
15 TraesCS3A01G295300 chr6D 79.081 631 115 11 4628 5247 105811971 105811347 8.200000e-113 418.0
16 TraesCS3A01G295300 chr1B 75.960 495 98 14 4667 5155 112694639 112694160 8.870000e-58 235.0
17 TraesCS3A01G295300 chr1D 76.119 469 85 18 4694 5155 71042178 71041730 2.480000e-53 220.0
18 TraesCS3A01G295300 chr5D 97.196 107 2 1 3228 3333 319691518 319691412 4.210000e-41 180.0
19 TraesCS3A01G295300 chr5D 84.677 124 18 1 5032 5154 150272077 150271954 7.200000e-24 122.0
20 TraesCS3A01G295300 chr7B 96.296 108 3 1 3228 3334 620659426 620659533 5.450000e-40 176.0
21 TraesCS3A01G295300 chr7B 96.296 108 2 2 3228 3333 695107162 695107269 5.450000e-40 176.0
22 TraesCS3A01G295300 chr7B 94.595 111 6 0 3228 3338 678620671 678620781 7.050000e-39 172.0
23 TraesCS3A01G295300 chr5B 96.296 108 2 2 3228 3335 339629891 339629786 5.450000e-40 176.0
24 TraesCS3A01G295300 chr4B 96.296 108 3 1 3228 3335 171146656 171146762 5.450000e-40 176.0
25 TraesCS3A01G295300 chr4A 96.262 107 4 0 3228 3334 522909731 522909837 5.450000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G295300 chr3A 529213813 529219107 5294 True 3299.80 9779 100.0000 1 5295 3 chr3A.!!$R1 5294
1 TraesCS3A01G295300 chr3D 421657037 421662668 5631 False 1879.00 4063 93.4305 23 5295 4 chr3D.!!$F1 5272
2 TraesCS3A01G295300 chr3B 548884957 548888406 3449 False 1356.25 2019 94.9350 748 4597 4 chr3B.!!$F4 3849
3 TraesCS3A01G295300 chr3B 548954715 548955453 738 False 745.00 745 85.2240 23 761 1 chr3B.!!$F1 738
4 TraesCS3A01G295300 chr6D 105811347 105811971 624 True 418.00 418 79.0810 4628 5247 1 chr6D.!!$R1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.527565 GCAACCCATCCACATGACAC 59.472 55.000 0.0 0.0 30.57 3.67 F
276 277 0.770499 ACCCATCCACATGACACACA 59.230 50.000 0.0 0.0 30.57 3.72 F
277 278 1.144708 ACCCATCCACATGACACACAA 59.855 47.619 0.0 0.0 30.57 3.33 F
338 340 1.667724 CCTCTTTGTTGCATAGGCGAG 59.332 52.381 0.0 0.0 45.35 5.03 F
1947 1988 2.029892 TTGTGCCCCAGTTTCCCCAT 62.030 55.000 0.0 0.0 0.00 4.00 F
2474 2518 0.179086 AGCTTTGTTTTGGGCAACGG 60.179 50.000 0.0 0.0 37.60 4.44 F
3285 3330 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.0 0.0 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1349 1372 2.169832 TTAGGCAATGCGATCCTAGC 57.830 50.000 0.00 0.0 34.31 3.42 R
2077 2119 2.552599 TCTTCGGTGTGTTGCCATTA 57.447 45.000 0.00 0.0 0.00 1.90 R
2146 2188 6.384305 ACAGCATATTACCTTGGTTAGACTCT 59.616 38.462 0.00 0.0 0.00 3.24 R
2361 2405 3.621715 CACCTTAATTTCAGGACTACGGC 59.378 47.826 9.79 0.0 35.14 5.68 R
3266 3311 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.0 0.00 1.28 R
3309 3354 0.105453 ACAGACAGGACAGACCCAGT 60.105 55.000 0.00 0.0 40.05 4.00 R
4834 5487 0.035458 AAGGTTGAGCTCCCTTCACG 59.965 55.000 16.16 0.0 36.29 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.890158 TGTTTCTCTCATGGTAGAAGCA 57.110 40.909 17.31 17.31 39.61 3.91
25 26 5.426689 TTCTCTCATGGTAGAAGCAACAT 57.573 39.130 6.57 0.00 0.00 2.71
33 34 8.121305 TCATGGTAGAAGCAACATTTTACAAT 57.879 30.769 0.00 0.00 0.00 2.71
100 101 6.857777 AGCTCATACTATGAACATGAAAGC 57.142 37.500 0.00 0.00 39.11 3.51
108 109 7.602517 ACTATGAACATGAAAGCAACTCTAC 57.397 36.000 0.00 0.00 0.00 2.59
111 112 9.317936 CTATGAACATGAAAGCAACTCTACATA 57.682 33.333 0.00 0.00 0.00 2.29
116 117 6.259608 ACATGAAAGCAACTCTACATAGATGC 59.740 38.462 0.00 6.44 38.16 3.91
227 228 4.806952 AGGAATAGAGTAGGAGCTCACT 57.193 45.455 17.19 11.44 37.94 3.41
273 274 0.527565 GCAACCCATCCACATGACAC 59.472 55.000 0.00 0.00 30.57 3.67
274 275 1.908344 CAACCCATCCACATGACACA 58.092 50.000 0.00 0.00 30.57 3.72
275 276 1.541147 CAACCCATCCACATGACACAC 59.459 52.381 0.00 0.00 30.57 3.82
276 277 0.770499 ACCCATCCACATGACACACA 59.230 50.000 0.00 0.00 30.57 3.72
277 278 1.144708 ACCCATCCACATGACACACAA 59.855 47.619 0.00 0.00 30.57 3.33
287 288 3.068448 ACATGACACACAACACATGCATT 59.932 39.130 0.00 0.00 42.28 3.56
303 304 2.027285 TGCATTCGATGGGTTTCTCTCA 60.027 45.455 0.00 0.00 0.00 3.27
327 329 2.930826 TTTCGGAGCTCCTCTTTGTT 57.069 45.000 29.73 0.00 0.00 2.83
331 333 1.831580 GGAGCTCCTCTTTGTTGCAT 58.168 50.000 26.25 0.00 0.00 3.96
338 340 1.667724 CCTCTTTGTTGCATAGGCGAG 59.332 52.381 0.00 0.00 45.35 5.03
399 406 3.555428 GCGAGCGCTCAGAAGTTT 58.445 55.556 34.69 0.00 38.26 2.66
404 411 2.032894 CGAGCGCTCAGAAGTTTTTCAA 60.033 45.455 34.69 0.00 35.70 2.69
741 763 7.827729 AGAAACTTTTAGAAGGTGTTACACTGT 59.172 33.333 15.44 3.37 37.19 3.55
853 875 3.651423 AGCCCTGTTTTTCCTAGTGTACT 59.349 43.478 0.00 0.00 0.00 2.73
856 878 5.585047 GCCCTGTTTTTCCTAGTGTACTATG 59.415 44.000 0.00 0.00 0.00 2.23
1220 1243 2.747855 CCCGAACCAGGCAAGAGC 60.748 66.667 0.00 0.00 41.10 4.09
1320 1343 2.148052 TTGTGGTGGGCGGAAGGTA 61.148 57.895 0.00 0.00 0.00 3.08
1349 1372 4.321601 CGAGATAAGATCAGCTAACCCCTG 60.322 50.000 0.00 0.00 0.00 4.45
1370 1393 3.077359 GCTAGGATCGCATTGCCTAAAT 58.923 45.455 2.41 0.00 34.11 1.40
1523 1546 6.266558 CAGATATGTAAGGCCTGTCTCTAGTT 59.733 42.308 5.69 0.00 0.00 2.24
1848 1873 2.440253 TGGTGGTTAAACAGTAGTGCCT 59.560 45.455 0.00 0.00 0.00 4.75
1889 1915 2.833631 TCCTTTCCAGAACTCGGTTC 57.166 50.000 8.26 8.26 42.25 3.62
1947 1988 2.029892 TTGTGCCCCAGTTTCCCCAT 62.030 55.000 0.00 0.00 0.00 4.00
1959 2000 3.395941 AGTTTCCCCATAGGCCATAAGAG 59.604 47.826 5.01 0.00 34.51 2.85
2077 2119 5.643421 AGATGGAGATGGCTCAAACTAAT 57.357 39.130 0.00 0.00 43.14 1.73
2146 2188 2.757314 TGTGCCAATGTGTGTTTTCTCA 59.243 40.909 0.00 0.00 0.00 3.27
2361 2405 2.359354 TCATGCCAACGAACCCCG 60.359 61.111 0.00 0.00 45.44 5.73
2474 2518 0.179086 AGCTTTGTTTTGGGCAACGG 60.179 50.000 0.00 0.00 37.60 4.44
2489 2533 3.922640 CGGCCAGGAGCTCTAGCC 61.923 72.222 23.85 23.85 45.14 3.93
2538 2583 9.209048 TGACACAGTTTATATATAGTCCAGGTT 57.791 33.333 5.55 0.00 0.00 3.50
2551 2596 9.920946 ATATAGTCCAGGTTTGATTGTAATTGT 57.079 29.630 0.00 0.00 0.00 2.71
2632 2677 3.117701 TCACAAATTGGGTCCTCTTGTCA 60.118 43.478 0.00 0.00 0.00 3.58
2791 2836 7.578852 TCATACGTAGTCATTTCAGTATACCG 58.421 38.462 0.08 0.00 43.93 4.02
2820 2865 5.104402 ACTCATGTCATGTGTATCCCATCAA 60.104 40.000 16.89 0.00 35.45 2.57
2840 2885 6.811253 TCAAATACGTGTTTCCATAAAGCT 57.189 33.333 7.37 0.00 0.00 3.74
2857 2902 2.886081 AGCTATCACACGAAGCTTCAG 58.114 47.619 25.47 18.77 43.97 3.02
2858 2903 2.232452 AGCTATCACACGAAGCTTCAGT 59.768 45.455 25.47 19.39 43.97 3.41
2859 2904 2.600867 GCTATCACACGAAGCTTCAGTC 59.399 50.000 25.47 7.84 33.40 3.51
2860 2905 2.820059 ATCACACGAAGCTTCAGTCA 57.180 45.000 25.47 10.91 0.00 3.41
2861 2906 2.140065 TCACACGAAGCTTCAGTCAG 57.860 50.000 25.47 16.42 0.00 3.51
2862 2907 1.409064 TCACACGAAGCTTCAGTCAGT 59.591 47.619 25.47 12.18 0.00 3.41
2863 2908 2.621526 TCACACGAAGCTTCAGTCAGTA 59.378 45.455 25.47 6.55 0.00 2.74
2864 2909 2.726760 CACACGAAGCTTCAGTCAGTAC 59.273 50.000 25.47 0.00 0.00 2.73
2865 2910 2.361119 ACACGAAGCTTCAGTCAGTACA 59.639 45.455 25.47 0.00 0.00 2.90
2866 2911 3.005897 ACACGAAGCTTCAGTCAGTACAT 59.994 43.478 25.47 2.52 0.00 2.29
2867 2912 3.366121 CACGAAGCTTCAGTCAGTACATG 59.634 47.826 25.47 7.54 0.00 3.21
2868 2913 3.255888 ACGAAGCTTCAGTCAGTACATGA 59.744 43.478 25.47 0.00 34.79 3.07
2869 2914 4.081972 ACGAAGCTTCAGTCAGTACATGAT 60.082 41.667 25.47 0.00 40.92 2.45
2870 2915 4.502282 CGAAGCTTCAGTCAGTACATGATC 59.498 45.833 25.47 0.00 40.92 2.92
2871 2916 5.411831 AAGCTTCAGTCAGTACATGATCA 57.588 39.130 0.00 0.00 40.92 2.92
2872 2917 5.611128 AGCTTCAGTCAGTACATGATCAT 57.389 39.130 1.18 1.18 40.92 2.45
2873 2918 5.358090 AGCTTCAGTCAGTACATGATCATG 58.642 41.667 29.95 29.95 40.92 3.07
2874 2919 4.025061 GCTTCAGTCAGTACATGATCATGC 60.025 45.833 31.17 18.18 42.39 4.06
2875 2920 5.349061 TTCAGTCAGTACATGATCATGCT 57.651 39.130 31.17 19.97 42.39 3.79
2876 2921 6.469782 TTCAGTCAGTACATGATCATGCTA 57.530 37.500 31.17 20.31 42.39 3.49
2877 2922 6.661304 TCAGTCAGTACATGATCATGCTAT 57.339 37.500 31.17 17.18 42.39 2.97
2878 2923 7.765695 TCAGTCAGTACATGATCATGCTATA 57.234 36.000 31.17 16.21 42.39 1.31
2879 2924 7.824672 TCAGTCAGTACATGATCATGCTATAG 58.175 38.462 31.17 18.81 42.39 1.31
2880 2925 6.530887 CAGTCAGTACATGATCATGCTATAGC 59.469 42.308 31.17 18.18 42.39 2.97
2881 2926 6.436847 AGTCAGTACATGATCATGCTATAGCT 59.563 38.462 31.17 20.37 42.39 3.32
2882 2927 6.751425 GTCAGTACATGATCATGCTATAGCTC 59.249 42.308 31.17 14.40 42.39 4.09
2883 2928 6.435277 TCAGTACATGATCATGCTATAGCTCA 59.565 38.462 31.17 19.22 42.39 4.26
2884 2929 6.752815 CAGTACATGATCATGCTATAGCTCAG 59.247 42.308 31.17 14.29 42.39 3.35
2885 2930 5.997384 ACATGATCATGCTATAGCTCAGA 57.003 39.130 31.17 18.56 42.39 3.27
2886 2931 6.356186 ACATGATCATGCTATAGCTCAGAA 57.644 37.500 31.17 5.21 42.39 3.02
2887 2932 6.766429 ACATGATCATGCTATAGCTCAGAAA 58.234 36.000 31.17 12.47 42.39 2.52
2888 2933 7.395617 ACATGATCATGCTATAGCTCAGAAAT 58.604 34.615 31.17 13.83 42.39 2.17
2889 2934 7.549842 ACATGATCATGCTATAGCTCAGAAATC 59.450 37.037 31.17 17.06 42.39 2.17
2890 2935 6.404708 TGATCATGCTATAGCTCAGAAATCC 58.595 40.000 24.61 10.98 42.66 3.01
2891 2936 6.212993 TGATCATGCTATAGCTCAGAAATCCT 59.787 38.462 24.61 5.56 42.66 3.24
2892 2937 7.398332 TGATCATGCTATAGCTCAGAAATCCTA 59.602 37.037 24.61 0.91 42.66 2.94
2893 2938 6.929625 TCATGCTATAGCTCAGAAATCCTAC 58.070 40.000 24.61 0.00 42.66 3.18
2894 2939 6.723515 TCATGCTATAGCTCAGAAATCCTACT 59.276 38.462 24.61 0.00 42.66 2.57
2895 2940 6.985653 TGCTATAGCTCAGAAATCCTACTT 57.014 37.500 24.61 0.00 42.66 2.24
2896 2941 6.753180 TGCTATAGCTCAGAAATCCTACTTG 58.247 40.000 24.61 0.00 42.66 3.16
2897 2942 5.637387 GCTATAGCTCAGAAATCCTACTTGC 59.363 44.000 17.75 0.00 38.21 4.01
2898 2943 2.898705 AGCTCAGAAATCCTACTTGCG 58.101 47.619 0.00 0.00 0.00 4.85
2899 2944 2.497675 AGCTCAGAAATCCTACTTGCGA 59.502 45.455 0.00 0.00 0.00 5.10
2900 2945 3.133721 AGCTCAGAAATCCTACTTGCGAT 59.866 43.478 0.00 0.00 0.00 4.58
2901 2946 3.873952 GCTCAGAAATCCTACTTGCGATT 59.126 43.478 0.00 0.00 0.00 3.34
2902 2947 4.025313 GCTCAGAAATCCTACTTGCGATTC 60.025 45.833 0.00 0.00 0.00 2.52
2903 2948 5.344743 TCAGAAATCCTACTTGCGATTCT 57.655 39.130 0.00 0.00 0.00 2.40
2904 2949 5.352284 TCAGAAATCCTACTTGCGATTCTC 58.648 41.667 0.00 0.00 0.00 2.87
2905 2950 5.105351 TCAGAAATCCTACTTGCGATTCTCA 60.105 40.000 0.00 0.00 0.00 3.27
2906 2951 5.582269 CAGAAATCCTACTTGCGATTCTCAA 59.418 40.000 0.00 0.00 0.00 3.02
2907 2952 6.092670 CAGAAATCCTACTTGCGATTCTCAAA 59.907 38.462 0.00 0.00 0.00 2.69
2908 2953 6.655003 AGAAATCCTACTTGCGATTCTCAAAA 59.345 34.615 0.00 0.00 0.00 2.44
2909 2954 6.817765 AATCCTACTTGCGATTCTCAAAAA 57.182 33.333 0.00 0.00 0.00 1.94
2979 3024 4.563374 GCCTTTGGTTTATCATGCCTGTTT 60.563 41.667 0.00 0.00 0.00 2.83
2995 3040 5.306678 TGCCTGTTTGATGTTTCCCTTTAAT 59.693 36.000 0.00 0.00 0.00 1.40
2997 3042 7.015682 TGCCTGTTTGATGTTTCCCTTTAATAA 59.984 33.333 0.00 0.00 0.00 1.40
2998 3043 7.330946 GCCTGTTTGATGTTTCCCTTTAATAAC 59.669 37.037 0.00 0.00 0.00 1.89
2999 3044 8.364142 CCTGTTTGATGTTTCCCTTTAATAACA 58.636 33.333 0.00 0.00 35.25 2.41
3000 3045 9.757227 CTGTTTGATGTTTCCCTTTAATAACAA 57.243 29.630 0.00 0.00 34.54 2.83
3049 3094 9.595823 TTAACTGTACTGCTTTTAGTATCCATC 57.404 33.333 0.00 0.00 35.75 3.51
3083 3128 4.949856 AGTTTCTTGGTTGTGTCTTGTCAT 59.050 37.500 0.00 0.00 0.00 3.06
3084 3129 5.066505 AGTTTCTTGGTTGTGTCTTGTCATC 59.933 40.000 0.00 0.00 0.00 2.92
3104 3149 3.551846 TCTCGTACTGGCATCAGATACA 58.448 45.455 0.00 0.00 43.49 2.29
3169 3214 5.221722 CCTCTACCACATGTTATATGCACCT 60.222 44.000 0.00 0.00 0.00 4.00
3203 3248 9.638239 CCAATACAATTTACACAAGCTGTTTAT 57.362 29.630 0.00 0.00 33.91 1.40
3206 3251 7.851822 ACAATTTACACAAGCTGTTTATTCG 57.148 32.000 0.00 0.00 33.91 3.34
3207 3252 6.861055 ACAATTTACACAAGCTGTTTATTCGG 59.139 34.615 0.00 0.00 33.91 4.30
3208 3253 6.811253 ATTTACACAAGCTGTTTATTCGGA 57.189 33.333 0.00 0.00 33.91 4.55
3209 3254 6.621316 TTTACACAAGCTGTTTATTCGGAA 57.379 33.333 0.00 0.00 33.91 4.30
3210 3255 4.483476 ACACAAGCTGTTTATTCGGAAC 57.517 40.909 0.00 0.00 0.00 3.62
3211 3256 3.880490 ACACAAGCTGTTTATTCGGAACA 59.120 39.130 0.00 0.00 35.81 3.18
3212 3257 4.336993 ACACAAGCTGTTTATTCGGAACAA 59.663 37.500 0.00 0.00 36.64 2.83
3213 3258 4.675114 CACAAGCTGTTTATTCGGAACAAC 59.325 41.667 0.00 0.19 36.64 3.32
3214 3259 4.336993 ACAAGCTGTTTATTCGGAACAACA 59.663 37.500 13.73 13.73 36.64 3.33
3215 3260 4.483476 AGCTGTTTATTCGGAACAACAC 57.517 40.909 11.44 9.47 36.64 3.32
3216 3261 3.880490 AGCTGTTTATTCGGAACAACACA 59.120 39.130 11.44 5.40 36.64 3.72
3217 3262 4.024048 AGCTGTTTATTCGGAACAACACAG 60.024 41.667 11.44 13.03 36.64 3.66
3218 3263 4.217754 TGTTTATTCGGAACAACACAGC 57.782 40.909 11.44 0.00 34.32 4.40
3219 3264 3.628032 TGTTTATTCGGAACAACACAGCA 59.372 39.130 11.44 0.00 34.32 4.41
3220 3265 3.889196 TTATTCGGAACAACACAGCAC 57.111 42.857 0.00 0.00 0.00 4.40
3221 3266 1.967319 ATTCGGAACAACACAGCACT 58.033 45.000 0.00 0.00 0.00 4.40
3222 3267 2.605837 TTCGGAACAACACAGCACTA 57.394 45.000 0.00 0.00 0.00 2.74
3223 3268 2.605837 TCGGAACAACACAGCACTAA 57.394 45.000 0.00 0.00 0.00 2.24
3224 3269 3.120321 TCGGAACAACACAGCACTAAT 57.880 42.857 0.00 0.00 0.00 1.73
3225 3270 3.472652 TCGGAACAACACAGCACTAATT 58.527 40.909 0.00 0.00 0.00 1.40
3226 3271 3.880490 TCGGAACAACACAGCACTAATTT 59.120 39.130 0.00 0.00 0.00 1.82
3227 3272 4.336993 TCGGAACAACACAGCACTAATTTT 59.663 37.500 0.00 0.00 0.00 1.82
3228 3273 4.675114 CGGAACAACACAGCACTAATTTTC 59.325 41.667 0.00 0.00 0.00 2.29
3229 3274 5.505654 CGGAACAACACAGCACTAATTTTCT 60.506 40.000 0.00 0.00 0.00 2.52
3230 3275 5.915196 GGAACAACACAGCACTAATTTTCTC 59.085 40.000 0.00 0.00 0.00 2.87
3231 3276 6.238759 GGAACAACACAGCACTAATTTTCTCT 60.239 38.462 0.00 0.00 0.00 3.10
3232 3277 6.064846 ACAACACAGCACTAATTTTCTCTG 57.935 37.500 0.00 0.00 0.00 3.35
3233 3278 4.756084 ACACAGCACTAATTTTCTCTGC 57.244 40.909 0.00 0.00 0.00 4.26
3234 3279 4.136796 ACACAGCACTAATTTTCTCTGCA 58.863 39.130 0.00 0.00 0.00 4.41
3235 3280 4.763793 ACACAGCACTAATTTTCTCTGCAT 59.236 37.500 0.00 0.00 0.00 3.96
3236 3281 5.242393 ACACAGCACTAATTTTCTCTGCATT 59.758 36.000 0.00 0.00 0.00 3.56
3237 3282 5.571741 CACAGCACTAATTTTCTCTGCATTG 59.428 40.000 0.00 0.00 0.00 2.82
3238 3283 4.561606 CAGCACTAATTTTCTCTGCATTGC 59.438 41.667 0.46 0.46 0.00 3.56
3239 3284 4.219070 AGCACTAATTTTCTCTGCATTGCA 59.781 37.500 11.50 11.50 36.92 4.08
3240 3285 4.325472 GCACTAATTTTCTCTGCATTGCAC 59.675 41.667 7.38 0.00 33.79 4.57
3241 3286 5.706916 CACTAATTTTCTCTGCATTGCACT 58.293 37.500 7.38 0.00 33.79 4.40
3242 3287 6.154445 CACTAATTTTCTCTGCATTGCACTT 58.846 36.000 7.38 0.00 33.79 3.16
3243 3288 6.643770 CACTAATTTTCTCTGCATTGCACTTT 59.356 34.615 7.38 0.00 33.79 2.66
3244 3289 5.917541 AATTTTCTCTGCATTGCACTTTG 57.082 34.783 7.38 0.00 33.79 2.77
3245 3290 2.427232 TTCTCTGCATTGCACTTTGC 57.573 45.000 7.38 8.20 45.29 3.68
3255 3300 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
3256 3301 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
3257 3302 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
3258 3303 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
3259 3304 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
3260 3305 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
3261 3306 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
3262 3307 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
3263 3308 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
3264 3309 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
3265 3310 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
3266 3311 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
3267 3312 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
3268 3313 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
3269 3314 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
3270 3315 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
3271 3316 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
3272 3317 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
3273 3318 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
3274 3319 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
3275 3320 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
3276 3321 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
3277 3322 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
3278 3323 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
3279 3324 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
3280 3325 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
3281 3326 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
3282 3327 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
3283 3328 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
3284 3329 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
3285 3330 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
3286 3331 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
3287 3332 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
3289 3334 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
3290 3335 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
3291 3336 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
3292 3337 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
3293 3338 1.540367 CCCCAGACCCCACCTTGTA 60.540 63.158 0.00 0.00 0.00 2.41
3294 3339 0.919289 CCCCAGACCCCACCTTGTAT 60.919 60.000 0.00 0.00 0.00 2.29
3295 3340 0.255890 CCCAGACCCCACCTTGTATG 59.744 60.000 0.00 0.00 0.00 2.39
3296 3341 0.255890 CCAGACCCCACCTTGTATGG 59.744 60.000 0.00 0.00 37.49 2.74
3303 3348 2.044123 CCACCTTGTATGGGAGCTTC 57.956 55.000 0.00 0.00 33.18 3.86
3304 3349 1.561542 CCACCTTGTATGGGAGCTTCT 59.438 52.381 0.00 0.00 33.18 2.85
3305 3350 2.771943 CCACCTTGTATGGGAGCTTCTA 59.228 50.000 0.00 0.00 33.18 2.10
3306 3351 3.392616 CCACCTTGTATGGGAGCTTCTAT 59.607 47.826 0.00 0.00 33.18 1.98
3307 3352 4.384056 CACCTTGTATGGGAGCTTCTATG 58.616 47.826 0.06 0.00 0.00 2.23
3308 3353 3.181450 ACCTTGTATGGGAGCTTCTATGC 60.181 47.826 0.06 0.00 0.00 3.14
3309 3354 3.181451 CCTTGTATGGGAGCTTCTATGCA 60.181 47.826 4.98 4.98 34.99 3.96
3310 3355 3.475566 TGTATGGGAGCTTCTATGCAC 57.524 47.619 4.98 0.00 34.99 4.57
3311 3356 3.041211 TGTATGGGAGCTTCTATGCACT 58.959 45.455 4.98 0.00 34.99 4.40
3312 3357 2.634815 ATGGGAGCTTCTATGCACTG 57.365 50.000 0.00 0.00 34.99 3.66
3313 3358 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
3314 3359 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
3315 3360 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
3316 3361 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
3317 3362 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
3318 3363 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
3319 3364 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
3320 3365 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
3321 3366 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
3322 3367 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
3323 3368 0.904649 TATGCACTGGGTCTGTCCTG 59.095 55.000 0.00 0.00 36.25 3.86
3324 3369 1.130054 ATGCACTGGGTCTGTCCTGT 61.130 55.000 0.00 0.00 39.15 4.00
3325 3370 1.004440 GCACTGGGTCTGTCCTGTC 60.004 63.158 0.00 0.00 36.95 3.51
3326 3371 1.476007 GCACTGGGTCTGTCCTGTCT 61.476 60.000 0.00 0.00 36.95 3.41
3327 3372 0.319728 CACTGGGTCTGTCCTGTCTG 59.680 60.000 0.00 0.00 36.95 3.51
3328 3373 0.105453 ACTGGGTCTGTCCTGTCTGT 60.105 55.000 0.00 0.00 34.50 3.41
3329 3374 1.051812 CTGGGTCTGTCCTGTCTGTT 58.948 55.000 0.00 0.00 36.25 3.16
3330 3375 1.417890 CTGGGTCTGTCCTGTCTGTTT 59.582 52.381 0.00 0.00 36.25 2.83
3331 3376 2.632996 CTGGGTCTGTCCTGTCTGTTTA 59.367 50.000 0.00 0.00 36.25 2.01
3398 3444 4.134563 ACTGCGTTCTGTTTATTTCAGGT 58.865 39.130 0.00 0.00 34.15 4.00
3547 3593 9.146984 AGTGCATGTGAGAATTTTAATTTGATG 57.853 29.630 0.00 0.00 0.00 3.07
3572 3618 3.942115 GCCCTTTTCTGTCTCTTACATCC 59.058 47.826 0.00 0.00 37.50 3.51
3704 3750 2.322658 TCTGGTCCAAAGGTAGTCGTT 58.677 47.619 0.00 0.00 0.00 3.85
3826 3872 9.691362 ACATGTTATGTTTTCAACAATTACCTC 57.309 29.630 0.00 0.00 45.86 3.85
3855 3901 4.996758 GCAACAAAAGCATTCCCAGTAAAT 59.003 37.500 0.00 0.00 0.00 1.40
3880 3926 7.979444 AGATCGTTTGAATTGGTCTTCTTTA 57.021 32.000 0.00 0.00 0.00 1.85
3909 3955 5.869888 GTCTCATCACTCCTAATTTTCGTGT 59.130 40.000 0.00 0.00 0.00 4.49
3967 4013 2.612212 TCCTGAAGTGAAAAGAACACGC 59.388 45.455 0.00 0.00 42.25 5.34
3982 4028 4.530857 CGCAGGGATCGTGGGGAC 62.531 72.222 3.54 0.00 0.00 4.46
4135 4185 3.114668 TCCGTTGCTTGCTACAGTTAA 57.885 42.857 7.80 0.00 0.00 2.01
4144 4194 4.795278 GCTTGCTACAGTTAATGCATTCAC 59.205 41.667 16.86 15.58 35.27 3.18
4147 4197 7.626240 GCTTGCTACAGTTAATGCATTCACTTA 60.626 37.037 20.97 15.37 35.27 2.24
4156 4206 2.683968 TGCATTCACTTACGACCTGAC 58.316 47.619 0.00 0.00 0.00 3.51
4158 4208 2.670229 GCATTCACTTACGACCTGACGA 60.670 50.000 0.00 0.00 37.03 4.20
4207 4257 7.331026 TGAAGGAGATAATGAACGATCTTTGT 58.669 34.615 4.36 0.00 32.47 2.83
4240 4290 0.902531 GAGGACCGAATCAAGGGACA 59.097 55.000 0.00 0.00 0.00 4.02
4578 4629 6.371548 TGTTTCTGTGTATATGAAGTCTTGGC 59.628 38.462 0.00 0.00 0.00 4.52
4586 4637 6.839134 TGTATATGAAGTCTTGGCCTTCTCTA 59.161 38.462 3.32 0.00 39.24 2.43
4591 4642 3.252351 AGTCTTGGCCTTCTCTACCTTT 58.748 45.455 3.32 0.00 0.00 3.11
4592 4643 4.426704 AGTCTTGGCCTTCTCTACCTTTA 58.573 43.478 3.32 0.00 0.00 1.85
4593 4644 5.033522 AGTCTTGGCCTTCTCTACCTTTAT 58.966 41.667 3.32 0.00 0.00 1.40
4598 4649 3.181453 GGCCTTCTCTACCTTTATGGGTC 60.181 52.174 0.00 0.00 40.48 4.46
4602 5255 5.425539 CCTTCTCTACCTTTATGGGTCTCAA 59.574 44.000 0.00 0.00 40.48 3.02
4619 5272 7.070821 TGGGTCTCAAACTTACTAAAAGAGTCT 59.929 37.037 0.00 0.00 39.81 3.24
4620 5273 7.932491 GGGTCTCAAACTTACTAAAAGAGTCTT 59.068 37.037 0.00 0.00 39.81 3.01
4621 5274 9.978044 GGTCTCAAACTTACTAAAAGAGTCTTA 57.022 33.333 5.65 0.00 39.81 2.10
4651 5304 5.236478 AGTCTCAAACTAATTGTCCAACACG 59.764 40.000 0.00 0.00 40.11 4.49
4654 5307 6.316640 TCTCAAACTAATTGTCCAACACGAAA 59.683 34.615 0.00 0.00 40.11 3.46
4655 5308 6.491394 TCAAACTAATTGTCCAACACGAAAG 58.509 36.000 0.00 0.00 40.11 2.62
4744 5397 1.456705 TTGGCCACCAACTCAACCC 60.457 57.895 3.88 0.00 38.75 4.11
4752 5405 2.019951 CAACTCAACCCCGTCGTCG 61.020 63.158 0.00 0.00 0.00 5.12
4803 5456 2.005451 CTCGGCATCTTGAAAGGTGAG 58.995 52.381 7.50 0.91 39.54 3.51
4820 5473 0.389757 GAGGAGGTACCCGATCTTGC 59.610 60.000 8.74 0.00 40.05 4.01
4843 5496 0.395312 GGTGAGAAACCGTGAAGGGA 59.605 55.000 0.00 0.00 46.96 4.20
4846 5499 0.321996 GAGAAACCGTGAAGGGAGCT 59.678 55.000 0.00 0.00 46.96 4.09
4876 5529 1.771854 TCAAGGGTGAGCCTGTTGTTA 59.228 47.619 2.92 0.00 33.36 2.41
4898 5551 1.753463 GTCCGGACCGTGATCCTCT 60.753 63.158 24.75 0.00 36.52 3.69
4922 5575 2.238353 CAGTTGGTGCTTGTCCTCG 58.762 57.895 0.00 0.00 0.00 4.63
4960 5613 1.682854 ACAATGGTCAAGTGCTTGGTG 59.317 47.619 11.47 5.81 40.78 4.17
5024 5681 1.474077 CCTTGCATAAGTGACTTGGGC 59.526 52.381 8.33 11.62 31.80 5.36
5025 5682 1.131126 CTTGCATAAGTGACTTGGGCG 59.869 52.381 8.33 0.00 30.34 6.13
5159 5817 0.035317 AAGCTGCATTGTCGAGGACA 59.965 50.000 1.02 0.00 41.09 4.02
5196 5854 5.476254 TGCATTGAACATATGAACAACAGGA 59.524 36.000 10.38 9.48 0.00 3.86
5200 5864 5.875224 TGAACATATGAACAACAGGAAGGA 58.125 37.500 10.38 0.00 0.00 3.36
5234 5898 6.743575 ATGCTCAAAATGTACTACCTTGAC 57.256 37.500 0.00 0.00 0.00 3.18
5236 5900 4.092968 GCTCAAAATGTACTACCTTGACCG 59.907 45.833 0.00 0.00 0.00 4.79
5251 5915 1.153168 ACCGGTGAGCATGCATACC 60.153 57.895 25.27 25.27 0.00 2.73
5268 5932 4.202367 GCATACCATTCCTAGTAGGCACTT 60.202 45.833 11.75 0.00 43.71 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.890158 TGCTTCTACCATGAGAGAAACA 57.110 40.909 9.64 8.78 31.46 2.83
1 2 4.997395 TGTTGCTTCTACCATGAGAGAAAC 59.003 41.667 9.64 6.79 31.46 2.78
2 3 5.227569 TGTTGCTTCTACCATGAGAGAAA 57.772 39.130 9.64 0.00 31.46 2.52
3 4 4.890158 TGTTGCTTCTACCATGAGAGAA 57.110 40.909 0.00 1.56 0.00 2.87
4 5 5.426689 AATGTTGCTTCTACCATGAGAGA 57.573 39.130 0.00 0.00 0.00 3.10
5 6 6.506500 AAAATGTTGCTTCTACCATGAGAG 57.493 37.500 0.00 0.00 0.00 3.20
6 7 6.939730 TGTAAAATGTTGCTTCTACCATGAGA 59.060 34.615 0.00 0.00 0.00 3.27
7 8 7.144722 TGTAAAATGTTGCTTCTACCATGAG 57.855 36.000 0.00 0.00 0.00 2.90
8 9 7.517614 TTGTAAAATGTTGCTTCTACCATGA 57.482 32.000 0.00 0.00 0.00 3.07
9 10 9.853555 TTATTGTAAAATGTTGCTTCTACCATG 57.146 29.630 0.00 0.00 0.00 3.66
11 12 9.853555 CATTATTGTAAAATGTTGCTTCTACCA 57.146 29.630 0.00 0.00 31.13 3.25
74 75 9.645059 GCTTTCATGTTCATAGTATGAGCTATA 57.355 33.333 22.70 7.92 40.62 1.31
100 101 4.689812 GCCAGATGCATCTATGTAGAGTTG 59.310 45.833 28.27 12.80 40.77 3.16
134 135 4.027621 CGCCGCGCTAGATATTGTAATTAG 60.028 45.833 5.56 0.00 0.00 1.73
227 228 6.687081 ATTTCTTGTTTAGGTCGTTTGTGA 57.313 33.333 0.00 0.00 0.00 3.58
273 274 2.521996 CCATCGAATGCATGTGTTGTG 58.478 47.619 0.00 0.00 0.00 3.33
274 275 1.473677 CCCATCGAATGCATGTGTTGT 59.526 47.619 0.00 0.00 0.00 3.32
275 276 1.473677 ACCCATCGAATGCATGTGTTG 59.526 47.619 0.00 1.28 0.00 3.33
276 277 1.838112 ACCCATCGAATGCATGTGTT 58.162 45.000 0.00 0.00 0.00 3.32
277 278 1.838112 AACCCATCGAATGCATGTGT 58.162 45.000 0.00 0.00 0.00 3.72
287 288 4.351874 AAAACTGAGAGAAACCCATCGA 57.648 40.909 0.00 0.00 0.00 3.59
321 322 0.099436 GGCTCGCCTATGCAACAAAG 59.901 55.000 0.00 0.00 37.32 2.77
327 329 3.550431 GAGGGGCTCGCCTATGCA 61.550 66.667 8.00 0.00 37.32 3.96
347 349 0.394565 CTACATGGGCAGGCCTAGTC 59.605 60.000 15.38 0.70 36.10 2.59
384 386 3.002759 ACTTGAAAAACTTCTGAGCGCTC 59.997 43.478 30.42 30.42 0.00 5.03
532 550 9.045223 CAATTAAAAAGCACTTCTAAAAAGGCT 57.955 29.630 0.00 0.00 0.00 4.58
533 551 9.040939 TCAATTAAAAAGCACTTCTAAAAAGGC 57.959 29.630 0.00 0.00 0.00 4.35
719 741 6.885922 AGACAGTGTAACACCTTCTAAAAGT 58.114 36.000 0.00 0.00 41.43 2.66
741 763 1.133792 GGCCAGCCCATTTAGCTTAGA 60.134 52.381 0.00 0.00 38.95 2.10
853 875 2.742116 GGAAGAGGCGGTGGGCATA 61.742 63.158 0.00 0.00 46.16 3.14
890 912 2.420642 GTCCTGTTTTAACTCGGGGAC 58.579 52.381 0.00 0.00 35.67 4.46
904 926 4.814294 GAATCGGGCGCGTCCTGT 62.814 66.667 29.47 13.48 42.13 4.00
949 972 2.362632 CCCCTCGGAGTCGAAGGT 60.363 66.667 4.02 0.00 43.53 3.50
1008 1031 3.003173 TCCAGGTGCTTCCCCTCG 61.003 66.667 0.00 0.00 36.75 4.63
1320 1343 3.230134 AGCTGATCTTATCTCGGAGCTT 58.770 45.455 0.00 0.00 32.88 3.74
1349 1372 2.169832 TTAGGCAATGCGATCCTAGC 57.830 50.000 0.00 0.00 34.31 3.42
1523 1546 3.571571 CACTTCGAGGTGAAACATACGA 58.428 45.455 22.12 0.00 39.98 3.43
1744 1769 3.004315 GCCCTTTCACGATTTGTTTCAGA 59.996 43.478 0.00 0.00 0.00 3.27
1801 1826 6.403878 AGATAGCGTTAGTTTTTAAGCCTCA 58.596 36.000 0.00 0.00 0.00 3.86
1848 1873 8.017418 AGGAAAAATGGAAAAGACATGTACAA 57.983 30.769 0.00 0.00 0.00 2.41
1889 1915 7.335171 TGGATGAACAACATTTATGACTCTGAG 59.665 37.037 2.45 2.45 39.56 3.35
1894 1920 7.284034 GGAGATGGATGAACAACATTTATGACT 59.716 37.037 0.00 0.00 39.56 3.41
1895 1921 7.284034 AGGAGATGGATGAACAACATTTATGAC 59.716 37.037 0.00 0.00 39.56 3.06
1897 1923 7.501559 AGAGGAGATGGATGAACAACATTTATG 59.498 37.037 0.00 0.00 39.56 1.90
1947 1988 2.752030 ACAGTGCTCTCTTATGGCCTA 58.248 47.619 3.32 0.00 0.00 3.93
2077 2119 2.552599 TCTTCGGTGTGTTGCCATTA 57.447 45.000 0.00 0.00 0.00 1.90
2146 2188 6.384305 ACAGCATATTACCTTGGTTAGACTCT 59.616 38.462 0.00 0.00 0.00 3.24
2361 2405 3.621715 CACCTTAATTTCAGGACTACGGC 59.378 47.826 9.79 0.00 35.14 5.68
2448 2492 2.802247 GCCCAAAACAAAGCTCAATGAC 59.198 45.455 0.00 0.00 0.00 3.06
2450 2494 2.836262 TGCCCAAAACAAAGCTCAATG 58.164 42.857 0.00 0.00 0.00 2.82
2549 2594 9.942850 CACTATCCCAATATCACAATATGTACA 57.057 33.333 0.00 0.00 0.00 2.90
2550 2595 8.883731 GCACTATCCCAATATCACAATATGTAC 58.116 37.037 0.00 0.00 0.00 2.90
2551 2596 8.825774 AGCACTATCCCAATATCACAATATGTA 58.174 33.333 0.00 0.00 0.00 2.29
2791 2836 7.957550 GGGATACACATGACATGAGTCGGTC 62.958 52.000 22.19 16.43 43.63 4.79
2840 2885 3.255888 ACTGACTGAAGCTTCGTGTGATA 59.744 43.478 23.60 12.21 0.00 2.15
2854 2899 6.661304 ATAGCATGATCATGTACTGACTGA 57.339 37.500 31.09 10.34 40.80 3.41
2855 2900 6.530887 GCTATAGCATGATCATGTACTGACTG 59.469 42.308 31.09 17.06 40.80 3.51
2856 2901 6.436847 AGCTATAGCATGATCATGTACTGACT 59.563 38.462 31.09 21.76 45.16 3.41
2857 2902 6.629128 AGCTATAGCATGATCATGTACTGAC 58.371 40.000 31.09 19.11 45.16 3.51
2858 2903 6.435277 TGAGCTATAGCATGATCATGTACTGA 59.565 38.462 31.09 15.68 45.16 3.41
2859 2904 6.628185 TGAGCTATAGCATGATCATGTACTG 58.372 40.000 31.09 19.90 45.16 2.74
2860 2905 6.662663 TCTGAGCTATAGCATGATCATGTACT 59.337 38.462 31.09 23.56 45.16 2.73
2861 2906 6.861144 TCTGAGCTATAGCATGATCATGTAC 58.139 40.000 31.09 18.58 45.16 2.90
2862 2907 7.472334 TTCTGAGCTATAGCATGATCATGTA 57.528 36.000 31.09 22.63 45.16 2.29
2863 2908 5.997384 TCTGAGCTATAGCATGATCATGT 57.003 39.130 31.09 21.47 45.16 3.21
2864 2909 7.011576 GGATTTCTGAGCTATAGCATGATCATG 59.988 40.741 28.04 28.04 45.16 3.07
2865 2910 7.049133 GGATTTCTGAGCTATAGCATGATCAT 58.951 38.462 26.07 1.18 45.16 2.45
2866 2911 6.212993 AGGATTTCTGAGCTATAGCATGATCA 59.787 38.462 26.07 18.49 45.16 2.92
2867 2912 6.642430 AGGATTTCTGAGCTATAGCATGATC 58.358 40.000 26.07 15.01 45.16 2.92
2868 2913 6.623979 AGGATTTCTGAGCTATAGCATGAT 57.376 37.500 26.07 5.67 45.16 2.45
2869 2914 6.723515 AGTAGGATTTCTGAGCTATAGCATGA 59.276 38.462 26.07 16.77 45.16 3.07
2870 2915 6.934056 AGTAGGATTTCTGAGCTATAGCATG 58.066 40.000 26.07 14.87 45.16 4.06
2871 2916 7.385267 CAAGTAGGATTTCTGAGCTATAGCAT 58.615 38.462 26.07 9.93 45.16 3.79
2872 2917 6.739843 GCAAGTAGGATTTCTGAGCTATAGCA 60.740 42.308 26.07 6.04 45.16 3.49
2873 2918 5.637387 GCAAGTAGGATTTCTGAGCTATAGC 59.363 44.000 17.33 17.33 42.49 2.97
2874 2919 5.861251 CGCAAGTAGGATTTCTGAGCTATAG 59.139 44.000 0.00 0.00 0.00 1.31
2875 2920 5.535030 TCGCAAGTAGGATTTCTGAGCTATA 59.465 40.000 0.00 0.00 39.48 1.31
2876 2921 4.342378 TCGCAAGTAGGATTTCTGAGCTAT 59.658 41.667 0.00 0.00 39.48 2.97
2877 2922 3.699538 TCGCAAGTAGGATTTCTGAGCTA 59.300 43.478 0.00 0.00 39.48 3.32
2878 2923 2.497675 TCGCAAGTAGGATTTCTGAGCT 59.502 45.455 0.00 0.00 39.48 4.09
2879 2924 2.893637 TCGCAAGTAGGATTTCTGAGC 58.106 47.619 0.00 0.00 39.48 4.26
2880 2925 5.355596 AGAATCGCAAGTAGGATTTCTGAG 58.644 41.667 0.00 0.00 33.25 3.35
2881 2926 5.105351 TGAGAATCGCAAGTAGGATTTCTGA 60.105 40.000 0.00 0.00 38.61 3.27
2882 2927 5.111989 TGAGAATCGCAAGTAGGATTTCTG 58.888 41.667 0.00 0.00 38.61 3.02
2883 2928 5.344743 TGAGAATCGCAAGTAGGATTTCT 57.655 39.130 0.00 0.00 38.61 2.52
2884 2929 6.422776 TTTGAGAATCGCAAGTAGGATTTC 57.577 37.500 0.00 0.00 38.61 2.17
2885 2930 6.817765 TTTTGAGAATCGCAAGTAGGATTT 57.182 33.333 0.00 0.00 38.61 2.17
2886 2931 6.817765 TTTTTGAGAATCGCAAGTAGGATT 57.182 33.333 0.00 0.00 38.61 3.01
2912 2957 6.127619 GCCATCAACTAGCAAGTAGGATTTTT 60.128 38.462 0.00 0.00 33.75 1.94
2913 2958 5.358160 GCCATCAACTAGCAAGTAGGATTTT 59.642 40.000 0.00 0.00 33.75 1.82
2922 2967 7.559590 AATTAACTAGCCATCAACTAGCAAG 57.440 36.000 0.00 0.00 40.70 4.01
2970 3015 2.893424 AGGGAAACATCAAACAGGCAT 58.107 42.857 0.00 0.00 0.00 4.40
2995 3040 7.119553 CGTTAGTTATTGCCCTTAACCTTGTTA 59.880 37.037 0.00 0.00 31.31 2.41
2997 3042 5.413523 CGTTAGTTATTGCCCTTAACCTTGT 59.586 40.000 0.00 0.00 31.31 3.16
2998 3043 5.413523 ACGTTAGTTATTGCCCTTAACCTTG 59.586 40.000 0.00 0.00 31.31 3.61
2999 3044 5.563592 ACGTTAGTTATTGCCCTTAACCTT 58.436 37.500 0.00 0.00 31.31 3.50
3000 3045 5.169992 ACGTTAGTTATTGCCCTTAACCT 57.830 39.130 0.00 0.00 31.31 3.50
3049 3094 6.747280 CACAACCAAGAAACTGTACAGAAAAG 59.253 38.462 29.30 12.60 0.00 2.27
3083 3128 3.551846 TGTATCTGATGCCAGTACGAGA 58.448 45.455 0.00 0.00 41.16 4.04
3084 3129 3.990318 TGTATCTGATGCCAGTACGAG 57.010 47.619 0.00 0.00 41.16 4.18
3104 3149 4.888326 TCCAAAGGCAACAGCATAAAAT 57.112 36.364 0.00 0.00 41.41 1.82
3169 3214 7.043961 TGTGTAAATTGTATTGGTTCAGCAA 57.956 32.000 0.00 0.00 0.00 3.91
3203 3248 2.605837 TAGTGCTGTGTTGTTCCGAA 57.394 45.000 0.00 0.00 0.00 4.30
3204 3249 2.605837 TTAGTGCTGTGTTGTTCCGA 57.394 45.000 0.00 0.00 0.00 4.55
3205 3250 3.896648 AATTAGTGCTGTGTTGTTCCG 57.103 42.857 0.00 0.00 0.00 4.30
3206 3251 5.831997 AGAAAATTAGTGCTGTGTTGTTCC 58.168 37.500 0.00 0.00 0.00 3.62
3207 3252 6.634436 CAGAGAAAATTAGTGCTGTGTTGTTC 59.366 38.462 0.00 0.00 0.00 3.18
3208 3253 6.498304 CAGAGAAAATTAGTGCTGTGTTGTT 58.502 36.000 0.00 0.00 0.00 2.83
3209 3254 5.506317 GCAGAGAAAATTAGTGCTGTGTTGT 60.506 40.000 0.00 0.00 0.00 3.32
3210 3255 4.913924 GCAGAGAAAATTAGTGCTGTGTTG 59.086 41.667 0.00 0.00 0.00 3.33
3211 3256 4.580167 TGCAGAGAAAATTAGTGCTGTGTT 59.420 37.500 0.00 0.00 35.11 3.32
3212 3257 4.136796 TGCAGAGAAAATTAGTGCTGTGT 58.863 39.130 0.00 0.00 35.11 3.72
3213 3258 4.754372 TGCAGAGAAAATTAGTGCTGTG 57.246 40.909 0.00 0.00 35.11 3.66
3214 3259 5.706916 CAATGCAGAGAAAATTAGTGCTGT 58.293 37.500 0.00 0.00 35.11 4.40
3215 3260 4.561606 GCAATGCAGAGAAAATTAGTGCTG 59.438 41.667 0.00 0.00 35.11 4.41
3216 3261 4.219070 TGCAATGCAGAGAAAATTAGTGCT 59.781 37.500 2.72 0.00 35.11 4.40
3217 3262 4.325472 GTGCAATGCAGAGAAAATTAGTGC 59.675 41.667 8.73 0.00 40.08 4.40
3218 3263 5.706916 AGTGCAATGCAGAGAAAATTAGTG 58.293 37.500 8.73 0.00 40.08 2.74
3219 3264 5.972107 AGTGCAATGCAGAGAAAATTAGT 57.028 34.783 8.73 0.00 40.08 2.24
3220 3265 6.400727 GCAAAGTGCAATGCAGAGAAAATTAG 60.401 38.462 8.73 0.00 44.26 1.73
3221 3266 5.406175 GCAAAGTGCAATGCAGAGAAAATTA 59.594 36.000 8.73 0.00 44.26 1.40
3222 3267 4.212636 GCAAAGTGCAATGCAGAGAAAATT 59.787 37.500 8.73 0.00 44.26 1.82
3223 3268 3.744426 GCAAAGTGCAATGCAGAGAAAAT 59.256 39.130 8.73 0.00 44.26 1.82
3224 3269 3.125316 GCAAAGTGCAATGCAGAGAAAA 58.875 40.909 8.73 0.00 44.26 2.29
3225 3270 2.746269 GCAAAGTGCAATGCAGAGAAA 58.254 42.857 8.73 0.00 44.26 2.52
3226 3271 2.427232 GCAAAGTGCAATGCAGAGAA 57.573 45.000 8.73 0.00 44.26 2.87
3237 3282 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
3238 3283 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
3239 3284 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
3240 3285 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
3241 3286 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
3242 3287 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
3243 3288 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
3244 3289 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
3245 3290 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
3246 3291 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
3247 3292 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
3248 3293 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
3249 3294 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
3250 3295 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
3251 3296 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
3252 3297 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
3253 3298 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
3254 3299 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
3255 3300 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
3256 3301 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
3257 3302 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
3258 3303 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
3259 3304 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
3260 3305 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
3261 3306 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
3262 3307 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
3263 3308 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
3264 3309 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
3265 3310 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
3266 3311 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
3267 3312 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
3268 3313 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
3269 3314 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
3270 3315 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
3272 3317 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
3273 3318 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
3274 3319 2.051050 TACAAGGTGGGGTCTGGGGA 62.051 60.000 0.00 0.00 0.00 4.81
3275 3320 0.919289 ATACAAGGTGGGGTCTGGGG 60.919 60.000 0.00 0.00 0.00 4.96
3276 3321 0.255890 CATACAAGGTGGGGTCTGGG 59.744 60.000 0.00 0.00 0.00 4.45
3277 3322 0.255890 CCATACAAGGTGGGGTCTGG 59.744 60.000 0.00 0.00 32.98 3.86
3278 3323 3.882131 CCATACAAGGTGGGGTCTG 57.118 57.895 0.00 0.00 32.98 3.51
3284 3329 1.561542 AGAAGCTCCCATACAAGGTGG 59.438 52.381 0.00 0.00 36.47 4.61
3285 3330 4.384056 CATAGAAGCTCCCATACAAGGTG 58.616 47.826 0.00 0.00 0.00 4.00
3286 3331 3.181450 GCATAGAAGCTCCCATACAAGGT 60.181 47.826 0.00 0.00 0.00 3.50
3287 3332 3.181451 TGCATAGAAGCTCCCATACAAGG 60.181 47.826 0.00 0.00 34.99 3.61
3288 3333 3.812053 GTGCATAGAAGCTCCCATACAAG 59.188 47.826 0.00 0.00 34.99 3.16
3289 3334 3.455910 AGTGCATAGAAGCTCCCATACAA 59.544 43.478 0.00 0.00 34.99 2.41
3290 3335 3.041211 AGTGCATAGAAGCTCCCATACA 58.959 45.455 0.00 0.00 34.99 2.29
3291 3336 3.397482 CAGTGCATAGAAGCTCCCATAC 58.603 50.000 0.00 0.00 34.99 2.39
3292 3337 2.369860 CCAGTGCATAGAAGCTCCCATA 59.630 50.000 0.00 0.00 34.99 2.74
3293 3338 1.142465 CCAGTGCATAGAAGCTCCCAT 59.858 52.381 0.00 0.00 34.99 4.00
3294 3339 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
3295 3340 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
3296 3341 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
3297 3342 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
3298 3343 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
3299 3344 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
3300 3345 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
3301 3346 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
3302 3347 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
3303 3348 1.134580 CAGGACAGACCCAGTGCATAG 60.135 57.143 0.00 0.00 40.05 2.23
3304 3349 0.904649 CAGGACAGACCCAGTGCATA 59.095 55.000 0.00 0.00 40.05 3.14
3305 3350 1.130054 ACAGGACAGACCCAGTGCAT 61.130 55.000 0.00 0.00 40.05 3.96
3306 3351 1.758440 GACAGGACAGACCCAGTGCA 61.758 60.000 0.00 0.00 40.05 4.57
3307 3352 1.004440 GACAGGACAGACCCAGTGC 60.004 63.158 0.00 0.00 40.05 4.40
3308 3353 0.319728 CAGACAGGACAGACCCAGTG 59.680 60.000 0.00 0.00 40.05 3.66
3309 3354 0.105453 ACAGACAGGACAGACCCAGT 60.105 55.000 0.00 0.00 40.05 4.00
3310 3355 1.051812 AACAGACAGGACAGACCCAG 58.948 55.000 0.00 0.00 40.05 4.45
3311 3356 1.507140 AAACAGACAGGACAGACCCA 58.493 50.000 0.00 0.00 40.05 4.51
3312 3357 3.983044 ATAAACAGACAGGACAGACCC 57.017 47.619 0.00 0.00 40.05 4.46
3313 3358 3.927142 CGAATAAACAGACAGGACAGACC 59.073 47.826 0.00 0.00 39.35 3.85
3314 3359 3.927142 CCGAATAAACAGACAGGACAGAC 59.073 47.826 0.00 0.00 0.00 3.51
3315 3360 3.830178 TCCGAATAAACAGACAGGACAGA 59.170 43.478 0.00 0.00 0.00 3.41
3316 3361 4.188247 TCCGAATAAACAGACAGGACAG 57.812 45.455 0.00 0.00 0.00 3.51
3317 3362 4.202274 TGTTCCGAATAAACAGACAGGACA 60.202 41.667 0.00 0.00 32.98 4.02
3318 3363 4.312443 TGTTCCGAATAAACAGACAGGAC 58.688 43.478 0.00 0.00 32.98 3.85
3319 3364 4.610605 TGTTCCGAATAAACAGACAGGA 57.389 40.909 0.00 0.00 32.98 3.86
3320 3365 4.513692 TGTTGTTCCGAATAAACAGACAGG 59.486 41.667 7.79 0.00 37.86 4.00
3321 3366 5.007234 TGTGTTGTTCCGAATAAACAGACAG 59.993 40.000 10.87 0.00 37.86 3.51
3322 3367 4.876679 TGTGTTGTTCCGAATAAACAGACA 59.123 37.500 10.87 6.02 37.86 3.41
3323 3368 5.412526 TGTGTTGTTCCGAATAAACAGAC 57.587 39.130 10.87 4.17 37.86 3.51
3324 3369 4.024387 GCTGTGTTGTTCCGAATAAACAGA 60.024 41.667 22.30 16.11 37.86 3.41
3325 3370 4.219033 GCTGTGTTGTTCCGAATAAACAG 58.781 43.478 18.10 18.10 37.86 3.16
3326 3371 3.628032 TGCTGTGTTGTTCCGAATAAACA 59.372 39.130 7.79 7.79 34.93 2.83
3327 3372 3.972502 GTGCTGTGTTGTTCCGAATAAAC 59.027 43.478 0.00 0.00 0.00 2.01
3328 3373 3.880490 AGTGCTGTGTTGTTCCGAATAAA 59.120 39.130 0.00 0.00 0.00 1.40
3329 3374 3.472652 AGTGCTGTGTTGTTCCGAATAA 58.527 40.909 0.00 0.00 0.00 1.40
3330 3375 3.120321 AGTGCTGTGTTGTTCCGAATA 57.880 42.857 0.00 0.00 0.00 1.75
3331 3376 1.967319 AGTGCTGTGTTGTTCCGAAT 58.033 45.000 0.00 0.00 0.00 3.34
3398 3444 1.819928 TTCCTTCGCATGCAAGCTTA 58.180 45.000 19.57 6.20 0.00 3.09
3547 3593 4.134563 TGTAAGAGACAGAAAAGGGCAAC 58.865 43.478 0.00 0.00 32.86 4.17
3572 3618 6.857964 GTGAATTTACATGACAACACTTGGAG 59.142 38.462 0.00 0.00 34.12 3.86
3826 3872 2.611224 GGAATGCTTTTGTTGCCAGAGG 60.611 50.000 0.00 0.00 0.00 3.69
3855 3901 7.979444 AAAGAAGACCAATTCAAACGATCTA 57.021 32.000 0.00 0.00 0.00 1.98
3880 3926 7.547370 CGAAAATTAGGAGTGATGAGACTCTTT 59.453 37.037 3.68 0.00 41.90 2.52
3909 3955 4.253685 CGGCTTCTTCTTGTCCTGATAAA 58.746 43.478 0.00 0.00 0.00 1.40
3967 4013 0.464373 CAATGTCCCCACGATCCCTG 60.464 60.000 0.00 0.00 0.00 4.45
4135 4185 3.262420 GTCAGGTCGTAAGTGAATGCAT 58.738 45.455 0.00 0.00 39.48 3.96
4144 4194 0.879765 AGGTGTCGTCAGGTCGTAAG 59.120 55.000 0.00 0.00 0.00 2.34
4147 4197 1.542492 ATAAGGTGTCGTCAGGTCGT 58.458 50.000 0.00 0.00 0.00 4.34
4156 4206 2.009051 TGCTGCATGAATAAGGTGTCG 58.991 47.619 0.00 0.00 0.00 4.35
4158 4208 4.142093 GGAATTGCTGCATGAATAAGGTGT 60.142 41.667 1.84 0.00 0.00 4.16
4207 4257 2.557056 CGGTCCTCTCTTGTTGTAGACA 59.443 50.000 0.00 0.00 36.19 3.41
4240 4290 2.803030 ATTCAGGCTTGAGCTCATGT 57.197 45.000 25.45 8.78 41.70 3.21
4551 4602 8.393366 CCAAGACTTCATATACACAGAAACATG 58.607 37.037 0.00 0.00 0.00 3.21
4578 4629 4.962995 TGAGACCCATAAAGGTAGAGAAGG 59.037 45.833 0.00 0.00 41.42 3.46
4586 4637 6.449830 AGTAAGTTTGAGACCCATAAAGGT 57.550 37.500 0.00 0.00 45.12 3.50
4591 4642 8.877195 ACTCTTTTAGTAAGTTTGAGACCCATA 58.123 33.333 0.00 0.00 36.36 2.74
4592 4643 7.746703 ACTCTTTTAGTAAGTTTGAGACCCAT 58.253 34.615 0.00 0.00 36.36 4.00
4593 4644 7.070821 AGACTCTTTTAGTAAGTTTGAGACCCA 59.929 37.037 0.00 0.00 39.07 4.51
4602 5255 9.984190 CTCTGGTTAAGACTCTTTTAGTAAGTT 57.016 33.333 0.00 0.00 39.07 2.66
4619 5272 7.660208 GGACAATTAGTTTGAGACTCTGGTTAA 59.340 37.037 3.68 0.00 39.86 2.01
4620 5273 7.159372 GGACAATTAGTTTGAGACTCTGGTTA 58.841 38.462 3.68 0.00 39.86 2.85
4621 5274 5.998363 GGACAATTAGTTTGAGACTCTGGTT 59.002 40.000 3.68 0.00 39.86 3.67
4651 5304 5.754778 TGCGCCTTTTAGTTTAAGACTTTC 58.245 37.500 4.18 0.00 39.86 2.62
4654 5307 5.529800 TCTTTGCGCCTTTTAGTTTAAGACT 59.470 36.000 4.18 0.00 42.55 3.24
4655 5308 5.754778 TCTTTGCGCCTTTTAGTTTAAGAC 58.245 37.500 4.18 0.00 0.00 3.01
4752 5405 3.614616 CCTTGCTAGTGATCGTCTTCAAC 59.385 47.826 0.00 0.00 0.00 3.18
4767 5420 1.592400 CGAGTCCCGACACCTTGCTA 61.592 60.000 0.00 0.00 41.76 3.49
4790 5443 2.904434 GGTACCTCCTCACCTTTCAAGA 59.096 50.000 4.06 0.00 0.00 3.02
4834 5487 0.035458 AAGGTTGAGCTCCCTTCACG 59.965 55.000 16.16 0.00 36.29 4.35
4843 5496 3.330701 TCACCCTTGATAAAGGTTGAGCT 59.669 43.478 4.96 0.00 36.59 4.09
4846 5499 3.561313 GGCTCACCCTTGATAAAGGTTGA 60.561 47.826 8.73 8.73 38.78 3.18
4876 5529 1.436336 GATCACGGTCCGGACGATT 59.564 57.895 27.68 11.81 34.93 3.34
4907 5560 2.281484 GCCGAGGACAAGCACCAA 60.281 61.111 0.00 0.00 0.00 3.67
4915 5568 0.389817 CAGAATTCGTGCCGAGGACA 60.390 55.000 0.00 0.00 37.14 4.02
4922 5575 1.002624 TCCCACCAGAATTCGTGCC 60.003 57.895 7.70 0.00 0.00 5.01
4978 5634 2.282462 GCACCCCAGTTGGAGTGG 60.282 66.667 13.72 0.00 38.45 4.00
5024 5681 1.439353 CCATTTCCATGAGGACGCCG 61.439 60.000 0.00 0.00 45.73 6.46
5025 5682 0.394352 ACCATTTCCATGAGGACGCC 60.394 55.000 0.00 0.00 45.73 5.68
5071 5729 2.887568 CGATGGTGGAGCTCGCAC 60.888 66.667 20.72 20.72 0.00 5.34
5159 5817 4.038282 TGTTCAATGCAGAATGACAAGCTT 59.962 37.500 0.00 0.00 39.69 3.74
5196 5854 5.441718 TTGAGCATAGATCAAGGTTCCTT 57.558 39.130 0.00 0.00 32.88 3.36
5200 5864 7.831193 AGTACATTTTGAGCATAGATCAAGGTT 59.169 33.333 0.00 0.00 39.12 3.50
5234 5898 0.535780 ATGGTATGCATGCTCACCGG 60.536 55.000 26.10 0.00 33.55 5.28
5236 5900 1.610522 GGAATGGTATGCATGCTCACC 59.389 52.381 25.59 25.59 0.00 4.02
5251 5915 7.283329 AGGAATAAAAGTGCCTACTAGGAATG 58.717 38.462 6.26 0.00 37.67 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.