Multiple sequence alignment - TraesCS3A01G294400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G294400 chr3A 100.000 8236 0 0 1 8236 528519498 528527733 0.000000e+00 15210.0
1 TraesCS3A01G294400 chr3A 79.657 1165 179 26 4081 5206 225445484 225446629 0.000000e+00 785.0
2 TraesCS3A01G294400 chr3A 92.308 104 5 3 7721 7822 170890005 170889903 2.400000e-30 145.0
3 TraesCS3A01G294400 chr3A 90.625 96 5 4 5206 5299 181108051 181107958 3.120000e-24 124.0
4 TraesCS3A01G294400 chr3A 89.583 96 8 2 5206 5299 93262468 93262563 4.040000e-23 121.0
5 TraesCS3A01G294400 chr3B 91.844 4144 230 55 1 4069 531787075 531791185 0.000000e+00 5681.0
6 TraesCS3A01G294400 chr3B 94.704 1435 46 12 6317 7737 531793385 531794803 0.000000e+00 2202.0
7 TraesCS3A01G294400 chr3B 93.436 1036 36 14 5206 6228 531792359 531793375 0.000000e+00 1507.0
8 TraesCS3A01G294400 chr3B 86.525 423 38 4 7820 8236 531794802 531795211 1.630000e-121 448.0
9 TraesCS3A01G294400 chr3B 85.586 333 46 2 4356 4687 825257270 825257601 1.700000e-91 348.0
10 TraesCS3A01G294400 chr3B 85.600 250 25 2 3805 4043 820413618 820413867 1.370000e-62 252.0
11 TraesCS3A01G294400 chr3B 92.308 104 5 3 7721 7822 122310335 122310233 2.400000e-30 145.0
12 TraesCS3A01G294400 chr3B 92.632 95 6 1 5206 5299 400321771 400321865 1.440000e-27 135.0
13 TraesCS3A01G294400 chr3D 95.736 2017 58 12 5733 7736 405815627 405817628 0.000000e+00 3223.0
14 TraesCS3A01G294400 chr3D 93.574 1992 95 18 2110 4069 405811967 405813957 0.000000e+00 2939.0
15 TraesCS3A01G294400 chr3D 89.369 1665 116 30 1 1658 405809913 405811523 0.000000e+00 2037.0
16 TraesCS3A01G294400 chr3D 87.101 1659 161 32 4068 5697 405813993 405815627 0.000000e+00 1829.0
17 TraesCS3A01G294400 chr3D 86.405 662 80 5 4545 5206 488119997 488120648 0.000000e+00 715.0
18 TraesCS3A01G294400 chr3D 85.113 665 90 6 4544 5206 598360821 598361478 0.000000e+00 671.0
19 TraesCS3A01G294400 chr3D 89.021 419 24 8 1647 2056 405811556 405811961 4.440000e-137 499.0
20 TraesCS3A01G294400 chr3D 90.809 272 19 2 7823 8094 405817631 405817896 7.860000e-95 359.0
21 TraesCS3A01G294400 chr3D 86.179 246 21 2 3805 4040 173713165 173712923 3.820000e-63 254.0
22 TraesCS3A01G294400 chr3D 85.246 244 24 3 3811 4043 8872902 8873144 2.970000e-59 241.0
23 TraesCS3A01G294400 chr3D 85.062 241 26 5 3808 4038 31906601 31906361 3.840000e-58 237.0
24 TraesCS3A01G294400 chr3D 92.308 104 5 3 7721 7822 142073086 142072984 2.400000e-30 145.0
25 TraesCS3A01G294400 chr3D 92.308 104 5 3 7721 7822 214499709 214499607 2.400000e-30 145.0
26 TraesCS3A01G294400 chr3D 91.667 96 6 2 5206 5299 319843958 319843863 1.870000e-26 132.0
27 TraesCS3A01G294400 chr3D 90.722 97 6 3 5206 5299 40170284 40170188 8.680000e-25 126.0
28 TraesCS3A01G294400 chr2B 81.790 961 136 19 4080 5017 775070123 775069179 0.000000e+00 769.0
29 TraesCS3A01G294400 chr2B 81.579 570 85 17 4079 4637 775123681 775123121 3.500000e-123 453.0
30 TraesCS3A01G294400 chr2B 85.484 248 25 2 3801 4037 391475316 391475563 1.780000e-61 248.0
31 TraesCS3A01G294400 chr2B 96.429 84 3 0 7188 7271 182846011 182845928 1.110000e-28 139.0
32 TraesCS3A01G294400 chr2B 90.526 95 8 1 5206 5299 246438242 246438336 3.120000e-24 124.0
33 TraesCS3A01G294400 chr2B 78.689 122 23 3 548 668 215506854 215506735 2.460000e-10 78.7
34 TraesCS3A01G294400 chr5D 85.757 667 86 7 4544 5209 451180084 451179426 0.000000e+00 697.0
35 TraesCS3A01G294400 chr5D 87.850 107 9 3 5206 5309 438448757 438448652 1.120000e-23 122.0
36 TraesCS3A01G294400 chr1A 84.956 678 94 7 4534 5210 505129795 505130465 0.000000e+00 680.0
37 TraesCS3A01G294400 chr1D 85.241 664 88 6 4544 5206 480970880 480971534 0.000000e+00 675.0
38 TraesCS3A01G294400 chr6D 85.068 663 82 5 4544 5206 356602317 356601672 0.000000e+00 660.0
39 TraesCS3A01G294400 chr6D 96.667 90 3 0 7736 7825 333950519 333950608 5.150000e-32 150.0
40 TraesCS3A01G294400 chr6D 92.308 52 4 0 560 611 470571124 470571073 3.190000e-09 75.0
41 TraesCS3A01G294400 chr4D 83.994 681 104 3 4530 5209 3331827 3331151 0.000000e+00 649.0
42 TraesCS3A01G294400 chr7D 84.462 251 26 2 3805 4045 72121047 72120800 1.380000e-57 235.0
43 TraesCS3A01G294400 chr7D 96.703 91 3 0 7735 7825 538028639 538028549 1.430000e-32 152.0
44 TraesCS3A01G294400 chr5A 84.615 247 24 8 3807 4042 401210788 401211031 4.970000e-57 233.0
45 TraesCS3A01G294400 chr5A 82.787 244 29 3 3805 4038 400672141 400672381 1.080000e-48 206.0
46 TraesCS3A01G294400 chr4B 88.710 186 21 0 3853 4038 382723994 382724179 2.310000e-55 228.0
47 TraesCS3A01G294400 chr5B 97.727 88 2 0 7736 7823 681345007 681345094 1.430000e-32 152.0
48 TraesCS3A01G294400 chr5B 94.737 95 5 0 7734 7828 705271018 705270924 1.850000e-31 148.0
49 TraesCS3A01G294400 chr4A 95.745 94 3 1 7732 7825 47630468 47630560 5.150000e-32 150.0
50 TraesCS3A01G294400 chr7A 91.753 97 5 3 5206 5300 260000932 260001027 1.870000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G294400 chr3A 528519498 528527733 8235 False 15210.000000 15210 100.00000 1 8236 1 chr3A.!!$F3 8235
1 TraesCS3A01G294400 chr3A 225445484 225446629 1145 False 785.000000 785 79.65700 4081 5206 1 chr3A.!!$F2 1125
2 TraesCS3A01G294400 chr3B 531787075 531795211 8136 False 2459.500000 5681 91.62725 1 8236 4 chr3B.!!$F4 8235
3 TraesCS3A01G294400 chr3D 405809913 405817896 7983 False 1814.333333 3223 90.93500 1 8094 6 chr3D.!!$F4 8093
4 TraesCS3A01G294400 chr3D 488119997 488120648 651 False 715.000000 715 86.40500 4545 5206 1 chr3D.!!$F2 661
5 TraesCS3A01G294400 chr3D 598360821 598361478 657 False 671.000000 671 85.11300 4544 5206 1 chr3D.!!$F3 662
6 TraesCS3A01G294400 chr2B 775069179 775070123 944 True 769.000000 769 81.79000 4080 5017 1 chr2B.!!$R3 937
7 TraesCS3A01G294400 chr2B 775123121 775123681 560 True 453.000000 453 81.57900 4079 4637 1 chr2B.!!$R4 558
8 TraesCS3A01G294400 chr5D 451179426 451180084 658 True 697.000000 697 85.75700 4544 5209 1 chr5D.!!$R2 665
9 TraesCS3A01G294400 chr1A 505129795 505130465 670 False 680.000000 680 84.95600 4534 5210 1 chr1A.!!$F1 676
10 TraesCS3A01G294400 chr1D 480970880 480971534 654 False 675.000000 675 85.24100 4544 5206 1 chr1D.!!$F1 662
11 TraesCS3A01G294400 chr6D 356601672 356602317 645 True 660.000000 660 85.06800 4544 5206 1 chr6D.!!$R1 662
12 TraesCS3A01G294400 chr4D 3331151 3331827 676 True 649.000000 649 83.99400 4530 5209 1 chr4D.!!$R1 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 547 0.170561 CCGACCGTTCTCGACAAGAT 59.829 55.000 0.00 0.00 39.71 2.40 F
1336 1386 0.110486 GCTGGTCCTGTTTCCCTTGA 59.890 55.000 0.00 0.00 0.00 3.02 F
2788 2885 0.106015 AGGGAGCAAAGCAACCAACT 60.106 50.000 5.10 0.00 0.00 3.16 F
4059 4188 0.391130 GAGCTTGCACGTATGGACCA 60.391 55.000 0.00 0.00 0.00 4.02 F
4914 5134 0.108186 ATGTGTGATGATGGACGCGT 60.108 50.000 13.85 13.85 0.00 6.01 F
5270 5528 1.445095 ATCGTCCTGATGCAGAGGC 59.555 57.895 9.34 4.81 35.45 4.70 F
6779 7063 0.522180 CTGAAGCTGAAGCAAGGCAG 59.478 55.000 4.90 2.75 45.16 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1393 1443 0.664761 CAGCATTCCCATCGCGAATT 59.335 50.000 15.24 0.0 0.00 2.17 R
2852 2949 0.510359 GTGCTCTTCTCAAGTGTGCG 59.490 55.000 0.00 0.0 0.00 5.34 R
4723 4943 0.102481 AGCGTCGCCGTCATCTTATT 59.898 50.000 14.86 0.0 36.15 1.40 R
4999 5219 0.037697 CAACCGTCTTCCACCGATCA 60.038 55.000 0.00 0.0 0.00 2.92 R
6014 6284 1.078848 AGCACGCTTCAAGCTAGGG 60.079 57.895 8.02 0.0 39.60 3.53 R
7232 7516 2.349886 GCTGATCGTGGTTTGCTCTTAG 59.650 50.000 0.00 0.0 0.00 2.18 R
7808 8096 1.006020 ACCCTAGTACTCCCTCCGTT 58.994 55.000 0.00 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 136 0.241213 CTTGAGGCTCTGTCGACGAA 59.759 55.000 16.72 0.00 0.00 3.85
144 147 1.142474 GTCGACGAACCGTGGATTTT 58.858 50.000 0.00 0.00 45.03 1.82
171 174 2.202878 TGCCTATCGCTTCACGGC 60.203 61.111 0.00 0.00 43.89 5.68
216 219 1.473497 GCCTAGGCCCCAGCTAGTAC 61.473 65.000 24.19 0.00 39.73 2.73
228 231 5.206587 CCCAGCTAGTACTTTAGGTTAGGA 58.793 45.833 0.00 0.00 29.53 2.94
287 290 2.775890 CGGTACCTCGCCTTCTATCTA 58.224 52.381 10.90 0.00 0.00 1.98
304 307 8.880991 TTCTATCTAGTATTTCGGGCTCTAAT 57.119 34.615 0.00 0.00 0.00 1.73
305 308 8.508883 TCTATCTAGTATTTCGGGCTCTAATC 57.491 38.462 0.00 0.00 0.00 1.75
306 309 5.979288 TCTAGTATTTCGGGCTCTAATCC 57.021 43.478 0.00 0.00 0.00 3.01
307 310 5.642165 TCTAGTATTTCGGGCTCTAATCCT 58.358 41.667 0.00 0.00 0.00 3.24
308 311 4.875561 AGTATTTCGGGCTCTAATCCTC 57.124 45.455 0.00 0.00 0.00 3.71
309 312 3.579151 AGTATTTCGGGCTCTAATCCTCC 59.421 47.826 0.00 0.00 0.00 4.30
330 333 1.006571 GACTTCGTCCGCCAAGACA 60.007 57.895 0.00 0.00 36.52 3.41
391 394 1.065345 GGGGAGGCAAGGTTAGAGTTC 60.065 57.143 0.00 0.00 0.00 3.01
421 424 0.450583 GTGCGTGACGGTGAGATCTA 59.549 55.000 7.25 0.00 0.00 1.98
436 439 7.519809 CGGTGAGATCTAAGACACTTCAGATAG 60.520 44.444 10.97 0.00 34.28 2.08
437 440 7.500892 GGTGAGATCTAAGACACTTCAGATAGA 59.499 40.741 10.97 0.00 34.28 1.98
465 468 0.960364 TTCAACATCGGCTCCAAGGC 60.960 55.000 0.00 0.00 37.44 4.35
476 505 4.713946 CCAAGGCGTTGGCTCTTA 57.286 55.556 24.08 0.00 46.99 2.10
481 510 1.449778 GGCGTTGGCTCTTAGGGAC 60.450 63.158 0.00 0.00 39.81 4.46
489 518 1.133976 GGCTCTTAGGGACATGTGCAT 60.134 52.381 19.67 15.03 0.00 3.96
501 530 1.399440 CATGTGCATGAAGACTTCCCG 59.601 52.381 12.66 4.83 41.20 5.14
502 531 0.684535 TGTGCATGAAGACTTCCCGA 59.315 50.000 12.66 0.00 0.00 5.14
518 547 0.170561 CCGACCGTTCTCGACAAGAT 59.829 55.000 0.00 0.00 39.71 2.40
526 555 1.758936 TCTCGACAAGATTAGGCCGA 58.241 50.000 0.00 0.00 0.00 5.54
542 571 0.323629 CCGACAAAGGTAGGGAAGCA 59.676 55.000 0.00 0.00 36.27 3.91
545 574 2.160205 GACAAAGGTAGGGAAGCAACC 58.840 52.381 0.00 0.00 0.00 3.77
585 614 5.768164 AGTGGTTGTTCGATGGTTTAGAAAT 59.232 36.000 0.00 0.00 0.00 2.17
586 615 6.264518 AGTGGTTGTTCGATGGTTTAGAAATT 59.735 34.615 0.00 0.00 0.00 1.82
698 727 6.524101 ACTCAGTTACAGGAGAGATTCTTC 57.476 41.667 10.27 0.00 35.17 2.87
748 777 2.492560 CATGCGCACATGCCACAT 59.507 55.556 14.90 0.00 46.75 3.21
750 779 2.344981 ATGCGCACATGCCACATGT 61.345 52.632 14.90 7.38 37.91 3.21
754 783 2.179767 CACATGCCACATGTGCCG 59.820 61.111 23.28 9.00 42.19 5.69
755 784 2.033911 ACATGCCACATGTGCCGA 59.966 55.556 20.81 6.24 0.00 5.54
756 785 1.603171 ACATGCCACATGTGCCGAA 60.603 52.632 20.81 2.50 0.00 4.30
816 856 4.881440 TGGCATGGGCGGCATCTC 62.881 66.667 12.47 0.00 42.47 2.75
877 917 0.974525 AACCGCTGGTACTAGTCCCC 60.975 60.000 8.16 1.04 33.12 4.81
928 968 1.515088 CGAGCGAGCTCACGAACAT 60.515 57.895 22.81 0.00 42.86 2.71
1072 1112 2.106938 GCATCTCGTGATCCCGCA 59.893 61.111 0.00 0.00 0.00 5.69
1272 1322 4.332637 CGTGCCCTGTGCTTGTGC 62.333 66.667 0.00 0.00 42.00 4.57
1303 1353 2.316687 GCGAGCGATTACGTGCAC 59.683 61.111 6.82 6.82 41.98 4.57
1329 1379 1.064017 TGTTCTTGGCTGGTCCTGTTT 60.064 47.619 0.00 0.00 35.26 2.83
1332 1382 0.895559 CTTGGCTGGTCCTGTTTCCC 60.896 60.000 0.00 0.00 35.26 3.97
1334 1384 1.360393 TGGCTGGTCCTGTTTCCCTT 61.360 55.000 0.00 0.00 35.26 3.95
1335 1385 0.895559 GGCTGGTCCTGTTTCCCTTG 60.896 60.000 0.00 0.00 0.00 3.61
1336 1386 0.110486 GCTGGTCCTGTTTCCCTTGA 59.890 55.000 0.00 0.00 0.00 3.02
1340 1390 0.476771 GTCCTGTTTCCCTTGACCCA 59.523 55.000 0.00 0.00 0.00 4.51
1341 1391 0.476771 TCCTGTTTCCCTTGACCCAC 59.523 55.000 0.00 0.00 0.00 4.61
1342 1392 0.184933 CCTGTTTCCCTTGACCCACA 59.815 55.000 0.00 0.00 0.00 4.17
1343 1393 1.410932 CCTGTTTCCCTTGACCCACAA 60.411 52.381 0.00 0.00 36.97 3.33
1344 1394 2.597455 CTGTTTCCCTTGACCCACAAT 58.403 47.619 0.00 0.00 37.88 2.71
1347 1397 0.768622 TTCCCTTGACCCACAATCGT 59.231 50.000 0.00 0.00 37.88 3.73
1348 1398 1.646912 TCCCTTGACCCACAATCGTA 58.353 50.000 0.00 0.00 37.88 3.43
1425 1475 3.276857 GGAATGCTGATGTGATGTGAGT 58.723 45.455 0.00 0.00 0.00 3.41
1458 1508 8.842358 TCGTTTTTGTCTTAACTAAGATCCAT 57.158 30.769 2.62 0.00 43.49 3.41
1460 1510 9.543018 CGTTTTTGTCTTAACTAAGATCCATTC 57.457 33.333 2.62 0.00 43.49 2.67
1466 1516 9.601217 TGTCTTAACTAAGATCCATTCTTTAGC 57.399 33.333 2.62 0.00 42.15 3.09
1514 1565 6.051717 GGTTTGCTTATCAGATCTTGAGCTA 58.948 40.000 11.26 2.88 39.68 3.32
1588 1639 7.599998 GTGAAAGCTATTGATTTGTTGGAATGT 59.400 33.333 0.00 0.00 31.35 2.71
1614 1665 1.204146 TGTGGAATGGGTAGAGAGGC 58.796 55.000 0.00 0.00 0.00 4.70
1635 1686 3.364549 CCTAGTTGGCATGGAATTGGAA 58.635 45.455 0.00 0.00 0.00 3.53
1636 1687 3.962718 CCTAGTTGGCATGGAATTGGAAT 59.037 43.478 0.00 0.00 0.00 3.01
1637 1688 4.406649 CCTAGTTGGCATGGAATTGGAATT 59.593 41.667 0.00 0.00 0.00 2.17
1638 1689 4.210724 AGTTGGCATGGAATTGGAATTG 57.789 40.909 0.00 0.00 0.00 2.32
1652 1739 8.592809 GGAATTGGAATTGTATGGCCATTAATA 58.407 33.333 26.37 10.24 0.00 0.98
1678 1765 5.455392 GGATGCTGATTCATGTTATTTCGG 58.545 41.667 0.00 0.00 0.00 4.30
1686 1773 6.375736 TGATTCATGTTATTTCGGCTGGTTTA 59.624 34.615 0.00 0.00 0.00 2.01
1728 1815 1.004862 GCAGTTCCTCTAAAGGGGCTT 59.995 52.381 0.00 0.00 43.56 4.35
1829 1916 5.157781 CGCTGGACATCTTACTTATAGAGC 58.842 45.833 0.00 0.00 0.00 4.09
1853 1945 7.041780 AGCTGTGAAAGTACTTTAGAATGTGTG 60.042 37.037 20.58 6.10 32.11 3.82
1866 1958 7.977789 TTAGAATGTGTGTTGCAAGAGAATA 57.022 32.000 0.00 0.00 0.00 1.75
1926 2018 2.938428 AGGGGACAATTTTGGGCATA 57.062 45.000 0.00 0.00 0.00 3.14
1929 2021 4.110824 AGGGGACAATTTTGGGCATAATT 58.889 39.130 0.00 0.00 0.00 1.40
1952 2044 1.940613 CGGGTTTTAGCTGGAGCATAC 59.059 52.381 0.00 0.00 45.16 2.39
2035 2130 9.896645 TCTTTTCATATCTTTGTGCTATCTTCT 57.103 29.630 0.00 0.00 0.00 2.85
2051 2146 8.432013 TGCTATCTTCTGTATGGTAATTGTCAT 58.568 33.333 0.00 0.00 0.00 3.06
2089 2184 5.242838 AGGCGTCATCACCAAAAATTCTTAA 59.757 36.000 0.00 0.00 0.00 1.85
2121 2216 7.119846 ACAGCAAACTAACATATGGAAAGTCTC 59.880 37.037 7.80 1.47 0.00 3.36
2131 2226 3.228188 TGGAAAGTCTCAAGTTGCCAT 57.772 42.857 0.00 0.00 38.44 4.40
2357 2452 5.874093 AGCTTCACATAGAATTAGGGATGG 58.126 41.667 0.00 0.00 35.25 3.51
2463 2558 3.643763 ACTAGAGACTGCAAAACGTCTG 58.356 45.455 10.76 0.60 40.37 3.51
2558 2653 7.939784 AAGTTAATCTTTGGACATTACCTCC 57.060 36.000 0.00 0.00 31.57 4.30
2574 2669 2.224305 ACCTCCTAGTGTGTTCAACTGC 60.224 50.000 0.00 0.00 0.00 4.40
2612 2707 6.058183 CCTTCCCTAGTGGTATTTCAGATTG 58.942 44.000 0.00 0.00 34.77 2.67
2633 2728 1.881973 TCAGCTTCTTTGTGTGATGGC 59.118 47.619 0.00 0.00 0.00 4.40
2635 2730 0.244721 GCTTCTTTGTGTGATGGCCC 59.755 55.000 0.00 0.00 0.00 5.80
2653 2748 7.448469 TGATGGCCCTCTCTTTTATAAATAAGC 59.552 37.037 9.61 0.00 0.00 3.09
2675 2770 5.428131 AGCAATAGATTCAGAGAAGGAAGGT 59.572 40.000 0.00 0.00 0.00 3.50
2703 2798 7.706607 GTGAAGGTCTTTTTGTAGCAGAAAAAT 59.293 33.333 0.00 0.00 33.10 1.82
2710 2805 9.598517 TCTTTTTGTAGCAGAAAAATTTGATGT 57.401 25.926 0.00 0.00 33.10 3.06
2777 2874 7.136822 TGATTCTTTAGCTTATAGGGAGCAA 57.863 36.000 0.00 0.00 42.56 3.91
2788 2885 0.106015 AGGGAGCAAAGCAACCAACT 60.106 50.000 5.10 0.00 0.00 3.16
2791 2888 1.269723 GGAGCAAAGCAACCAACTACC 59.730 52.381 0.00 0.00 0.00 3.18
2849 2946 3.951775 ATGGCAAAATAACGGCTTTGA 57.048 38.095 0.00 0.00 35.03 2.69
2852 2949 4.739195 TGGCAAAATAACGGCTTTGATAC 58.261 39.130 0.85 0.00 35.03 2.24
2871 2968 0.510359 CGCACACTTGAGAAGAGCAC 59.490 55.000 0.00 0.00 0.00 4.40
2874 2971 3.329386 GCACACTTGAGAAGAGCACATA 58.671 45.455 0.00 0.00 0.00 2.29
2944 3046 7.942341 AGATTGTACCCATCACTTTTGTCTAAA 59.058 33.333 5.25 0.00 0.00 1.85
2947 3049 7.057894 TGTACCCATCACTTTTGTCTAAAACT 58.942 34.615 0.00 0.00 32.62 2.66
2969 3081 5.291128 ACTTAATTGGAAAGTGATAGTCGCG 59.709 40.000 0.00 0.00 35.87 5.87
2975 3087 3.790288 GGAAAGTGATAGTCGCGTTAGTC 59.210 47.826 5.77 1.56 29.27 2.59
2980 3092 4.874966 AGTGATAGTCGCGTTAGTCTACTT 59.125 41.667 5.77 0.00 30.95 2.24
3028 3140 1.540367 TTCGGAATGGTCTGGGGGT 60.540 57.895 0.00 0.00 0.00 4.95
3052 3164 1.954382 GAGGTGTGGGTTTGGAAGTTC 59.046 52.381 0.00 0.00 0.00 3.01
3083 3195 1.471119 CCGCTCCAGTTGTCTACCTA 58.529 55.000 0.00 0.00 0.00 3.08
3262 3374 5.316167 TGTTCCAGATGTTACTTCTGCATT 58.684 37.500 18.99 0.00 39.42 3.56
3349 3461 6.662234 CCACGTATTCTTATATCTCCACCCTA 59.338 42.308 0.00 0.00 0.00 3.53
3456 3568 6.354794 AGTTTAGCAGTAGTCATGTGGTAA 57.645 37.500 0.00 0.00 33.51 2.85
3493 3605 5.658190 TGTAAGGGATACTTGTAGGTGTACC 59.342 44.000 0.00 0.00 40.37 3.34
3512 3624 2.998279 GCACCCAAGCTCACATGGC 61.998 63.158 0.00 0.00 33.12 4.40
3600 3713 6.518395 CGTACCGTCAAGTATTTTGTGATTTG 59.482 38.462 0.00 0.00 0.00 2.32
3824 3942 0.693049 CCTAGCTCAACTGGTTGGGT 59.307 55.000 13.83 11.60 42.84 4.51
3856 3984 0.923358 AAACCCAACACCTCCTCACA 59.077 50.000 0.00 0.00 0.00 3.58
3901 4029 1.048601 TCTTGACGACCAGGCTTTCT 58.951 50.000 0.00 0.00 0.00 2.52
3908 4036 1.822506 GACCAGGCTTTCTTGGTACC 58.177 55.000 4.43 4.43 34.38 3.34
3911 4039 1.005924 CCAGGCTTTCTTGGTACCCAT 59.994 52.381 10.07 0.00 31.53 4.00
3912 4040 2.241176 CCAGGCTTTCTTGGTACCCATA 59.759 50.000 10.07 0.00 31.53 2.74
3985 4113 3.181496 GGTACTCATGCTTAAAAGGCTGC 60.181 47.826 0.00 0.00 0.00 5.25
4012 4140 1.448540 CTAGTTGGTGCAGAGGCCG 60.449 63.158 0.00 0.00 40.13 6.13
4053 4182 4.096382 CCCAATTTTAGAGCTTGCACGTAT 59.904 41.667 0.00 0.00 0.00 3.06
4059 4188 0.391130 GAGCTTGCACGTATGGACCA 60.391 55.000 0.00 0.00 0.00 4.02
4166 4337 2.448582 AAAGCCCTCGTGGTGGTCA 61.449 57.895 2.33 0.00 36.04 4.02
4246 4431 1.595382 GGAACATGGAGGCGGATCG 60.595 63.158 0.00 0.00 0.00 3.69
4320 4520 2.126071 CGGATCAACGCGTCCTGT 60.126 61.111 14.44 0.00 32.19 4.00
4427 4644 0.454196 GTGCTCGTTTTGGTGGTGTT 59.546 50.000 0.00 0.00 0.00 3.32
4497 4714 1.807226 CGTGCGTCTGATGGGTCTA 59.193 57.895 0.00 0.00 0.00 2.59
4501 4719 0.461961 GCGTCTGATGGGTCTAGCTT 59.538 55.000 0.00 0.00 0.00 3.74
4511 4729 0.609131 GGTCTAGCTTGCTTTGGCCA 60.609 55.000 0.00 0.00 37.74 5.36
4524 4742 3.742640 GCTTTGGCCATAGTCGAGATCTT 60.743 47.826 22.26 0.00 0.00 2.40
4542 4760 0.968405 TTTGAAGGTGGCAATCTGGC 59.032 50.000 0.00 0.00 44.03 4.85
4694 4914 4.597507 AGCTCTAGACCTCTATCTGCTACT 59.402 45.833 0.00 0.00 31.47 2.57
4715 4935 2.116238 TCCAGGGAAAACCCTAGATCG 58.884 52.381 7.53 0.00 41.63 3.69
4818 5038 0.391597 GACCAGTGGACGGTTTCAGA 59.608 55.000 18.40 0.00 36.69 3.27
4914 5134 0.108186 ATGTGTGATGATGGACGCGT 60.108 50.000 13.85 13.85 0.00 6.01
4956 5176 1.959226 GTCATGGTGGCGTCAACGT 60.959 57.895 0.00 0.00 42.22 3.99
4985 5205 2.487934 GCAAGGTCGATGCATCAGTAT 58.512 47.619 25.70 6.58 43.29 2.12
4999 5219 5.163332 TGCATCAGTATCTGCTCTGAAGATT 60.163 40.000 0.00 0.00 42.67 2.40
5032 5252 3.357079 GTTGTGGCGGCCTCTGTG 61.357 66.667 21.46 0.00 0.00 3.66
5218 5475 9.512435 GAGTAGCGACAGATATTACTTTGTAAA 57.488 33.333 0.00 0.00 0.00 2.01
5262 5520 1.590932 GCTTCATGCATCGTCCTGAT 58.409 50.000 0.00 0.00 42.31 2.90
5270 5528 1.445095 ATCGTCCTGATGCAGAGGC 59.555 57.895 9.34 4.81 35.45 4.70
5271 5529 2.037620 ATCGTCCTGATGCAGAGGCC 62.038 60.000 9.34 0.00 40.13 5.19
5272 5530 2.993008 GTCCTGATGCAGAGGCCA 59.007 61.111 5.01 0.00 40.13 5.36
5291 5549 1.635487 CAGGGGTCATCCTCCTTTTCA 59.365 52.381 0.00 0.00 33.94 2.69
5334 5594 3.687212 CCATTTGGCATTAGACACGTGTA 59.313 43.478 23.44 6.65 27.28 2.90
5336 5596 3.671008 TTGGCATTAGACACGTGTAGT 57.329 42.857 23.44 14.64 27.28 2.73
5341 5601 5.049954 TGGCATTAGACACGTGTAGTTTTTC 60.050 40.000 23.44 7.22 0.00 2.29
5351 5611 7.364970 ACACGTGTAGTTTTTCTTTTCTTTGT 58.635 30.769 21.98 0.00 0.00 2.83
5353 5613 7.535940 CACGTGTAGTTTTTCTTTTCTTTGTGA 59.464 33.333 7.58 0.00 0.00 3.58
5356 5616 8.027189 GTGTAGTTTTTCTTTTCTTTGTGAGGT 58.973 33.333 0.00 0.00 0.00 3.85
5360 5620 3.662759 TCTTTTCTTTGTGAGGTGGGT 57.337 42.857 0.00 0.00 0.00 4.51
5535 5805 7.978982 AGTGCAATACTACATTCTTCAACATC 58.021 34.615 0.00 0.00 38.04 3.06
6014 6284 6.902771 TTCCTACTACATGATCTCCTAAGC 57.097 41.667 0.00 0.00 0.00 3.09
6190 6461 0.815615 CTTGAGAAGCGGGTATGGCC 60.816 60.000 0.00 0.00 0.00 5.36
6194 6465 1.819632 GAAGCGGGTATGGCCAGTG 60.820 63.158 13.05 0.00 39.65 3.66
6331 6602 8.408601 GTTAATACCAATCATTTCAGTCATGCT 58.591 33.333 0.00 0.00 0.00 3.79
6585 6864 7.147461 ACCCAAACCCATTACTACAAAACATTT 60.147 33.333 0.00 0.00 0.00 2.32
6666 6945 7.116376 GTGAGGCCTTTATTGTAAAAAGAAAGC 59.884 37.037 6.77 0.00 36.27 3.51
6677 6956 7.759489 TGTAAAAAGAAAGCAGGTGTGATAT 57.241 32.000 0.00 0.00 0.00 1.63
6779 7063 0.522180 CTGAAGCTGAAGCAAGGCAG 59.478 55.000 4.90 2.75 45.16 4.85
6866 7150 3.257624 TCGAAAAGACTGAAGGGTACTCC 59.742 47.826 0.00 0.00 0.00 3.85
7067 7351 3.616956 TCTTGCCGATCTGATCAAACT 57.383 42.857 17.19 0.00 0.00 2.66
7139 7423 2.224305 CCCTCTCAAACCTGAAGACGTT 60.224 50.000 0.00 0.00 0.00 3.99
7232 7516 5.248380 ACTATGGGAGCCATATTCTTTCC 57.752 43.478 0.00 0.00 44.33 3.13
7276 7560 2.108157 AGGTCAGTTGTGCGCGAA 59.892 55.556 12.10 0.00 0.00 4.70
7286 7570 0.808125 TGTGCGCGAAAATATGCCTT 59.192 45.000 12.10 0.00 0.00 4.35
7329 7617 9.923143 ATAAAAAGAAACTAAAATTTCCCTCCG 57.077 29.630 0.00 0.00 39.05 4.63
7397 7685 1.599518 TGATGCACGGTGGTGGTTC 60.600 57.895 10.60 0.00 44.54 3.62
7434 7722 3.231818 GGTACAGAGCTATCTTGCCCTA 58.768 50.000 0.00 0.00 31.64 3.53
7435 7723 3.006003 GGTACAGAGCTATCTTGCCCTAC 59.994 52.174 0.00 0.00 31.64 3.18
7436 7724 2.752030 ACAGAGCTATCTTGCCCTACA 58.248 47.619 0.00 0.00 31.64 2.74
7581 7869 1.202336 GGGCATCTGATTTTTCTGCGG 60.202 52.381 0.00 0.00 33.69 5.69
7624 7912 7.386851 ACTGGAATATTACCCTGTAATGATCG 58.613 38.462 9.21 0.00 33.65 3.69
7697 7985 9.423061 GAAAGAAATAAATGTTAGGCATGTTGT 57.577 29.630 0.00 0.00 37.96 3.32
7737 8025 3.058914 AGTTCTTTGCGCTTCACACATAC 60.059 43.478 9.73 0.00 0.00 2.39
7738 8026 2.766313 TCTTTGCGCTTCACACATACT 58.234 42.857 9.73 0.00 0.00 2.12
7739 8027 2.736721 TCTTTGCGCTTCACACATACTC 59.263 45.455 9.73 0.00 0.00 2.59
7740 8028 1.438651 TTGCGCTTCACACATACTCC 58.561 50.000 9.73 0.00 0.00 3.85
7741 8029 0.391130 TGCGCTTCACACATACTCCC 60.391 55.000 9.73 0.00 0.00 4.30
7742 8030 0.108138 GCGCTTCACACATACTCCCT 60.108 55.000 0.00 0.00 0.00 4.20
7743 8031 1.927895 CGCTTCACACATACTCCCTC 58.072 55.000 0.00 0.00 0.00 4.30
7744 8032 1.471676 CGCTTCACACATACTCCCTCC 60.472 57.143 0.00 0.00 0.00 4.30
7745 8033 1.471676 GCTTCACACATACTCCCTCCG 60.472 57.143 0.00 0.00 0.00 4.63
7746 8034 1.825474 CTTCACACATACTCCCTCCGT 59.175 52.381 0.00 0.00 0.00 4.69
7747 8035 1.471119 TCACACATACTCCCTCCGTC 58.529 55.000 0.00 0.00 0.00 4.79
7748 8036 0.460311 CACACATACTCCCTCCGTCC 59.540 60.000 0.00 0.00 0.00 4.79
7749 8037 0.686769 ACACATACTCCCTCCGTCCC 60.687 60.000 0.00 0.00 0.00 4.46
7750 8038 0.686441 CACATACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
7751 8039 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
7752 8040 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
7753 8041 1.768870 CATACTCCCTCCGTCCCAAAT 59.231 52.381 0.00 0.00 0.00 2.32
7754 8042 1.961133 TACTCCCTCCGTCCCAAATT 58.039 50.000 0.00 0.00 0.00 1.82
7755 8043 1.961133 ACTCCCTCCGTCCCAAATTA 58.039 50.000 0.00 0.00 0.00 1.40
7756 8044 1.558294 ACTCCCTCCGTCCCAAATTAC 59.442 52.381 0.00 0.00 0.00 1.89
7757 8045 1.838077 CTCCCTCCGTCCCAAATTACT 59.162 52.381 0.00 0.00 0.00 2.24
7758 8046 1.835531 TCCCTCCGTCCCAAATTACTC 59.164 52.381 0.00 0.00 0.00 2.59
7759 8047 1.472728 CCCTCCGTCCCAAATTACTCG 60.473 57.143 0.00 0.00 0.00 4.18
7760 8048 1.206371 CCTCCGTCCCAAATTACTCGT 59.794 52.381 0.00 0.00 0.00 4.18
7761 8049 2.537401 CTCCGTCCCAAATTACTCGTC 58.463 52.381 0.00 0.00 0.00 4.20
7762 8050 1.135315 TCCGTCCCAAATTACTCGTCG 60.135 52.381 0.00 0.00 0.00 5.12
7763 8051 1.403249 CCGTCCCAAATTACTCGTCGT 60.403 52.381 0.00 0.00 0.00 4.34
7764 8052 1.652124 CGTCCCAAATTACTCGTCGTG 59.348 52.381 0.00 0.00 0.00 4.35
7765 8053 1.997606 GTCCCAAATTACTCGTCGTGG 59.002 52.381 0.00 0.00 0.00 4.94
7766 8054 1.619827 TCCCAAATTACTCGTCGTGGT 59.380 47.619 0.00 0.00 0.00 4.16
7767 8055 2.037511 TCCCAAATTACTCGTCGTGGTT 59.962 45.455 0.00 0.00 0.00 3.67
7768 8056 2.809696 CCCAAATTACTCGTCGTGGTTT 59.190 45.455 0.00 0.00 0.00 3.27
7769 8057 3.251487 CCCAAATTACTCGTCGTGGTTTT 59.749 43.478 0.00 0.00 0.00 2.43
7770 8058 4.451774 CCCAAATTACTCGTCGTGGTTTTA 59.548 41.667 0.00 0.00 0.00 1.52
7771 8059 5.390145 CCCAAATTACTCGTCGTGGTTTTAG 60.390 44.000 0.00 0.00 0.00 1.85
7772 8060 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
7773 8061 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
7774 8062 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
7775 8063 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
7776 8064 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
7777 8065 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
7778 8066 4.269363 ACTCGTCGTGGTTTTAGTTCAAAG 59.731 41.667 0.00 0.00 0.00 2.77
7779 8067 4.183101 TCGTCGTGGTTTTAGTTCAAAGT 58.817 39.130 0.00 0.00 0.00 2.66
7780 8068 4.630940 TCGTCGTGGTTTTAGTTCAAAGTT 59.369 37.500 0.00 0.00 0.00 2.66
7781 8069 5.809562 TCGTCGTGGTTTTAGTTCAAAGTTA 59.190 36.000 0.00 0.00 0.00 2.24
7782 8070 6.312426 TCGTCGTGGTTTTAGTTCAAAGTTAA 59.688 34.615 0.00 0.00 0.00 2.01
7783 8071 6.960431 CGTCGTGGTTTTAGTTCAAAGTTAAA 59.040 34.615 0.00 0.00 0.00 1.52
7784 8072 7.045419 CGTCGTGGTTTTAGTTCAAAGTTAAAC 60.045 37.037 4.42 4.42 32.81 2.01
7785 8073 7.964559 GTCGTGGTTTTAGTTCAAAGTTAAACT 59.035 33.333 10.35 8.23 39.07 2.66
7786 8074 9.160496 TCGTGGTTTTAGTTCAAAGTTAAACTA 57.840 29.630 10.35 6.67 37.02 2.24
7787 8075 9.771915 CGTGGTTTTAGTTCAAAGTTAAACTAA 57.228 29.630 14.81 14.81 42.96 2.24
7794 8082 9.771915 TTAGTTCAAAGTTAAACTAAAACCACG 57.228 29.630 15.80 0.00 42.17 4.94
7795 8083 8.042944 AGTTCAAAGTTAAACTAAAACCACGA 57.957 30.769 0.00 0.00 34.05 4.35
7796 8084 7.964559 AGTTCAAAGTTAAACTAAAACCACGAC 59.035 33.333 0.00 0.00 34.05 4.34
7797 8085 6.476896 TCAAAGTTAAACTAAAACCACGACG 58.523 36.000 0.00 0.00 0.00 5.12
7798 8086 6.312426 TCAAAGTTAAACTAAAACCACGACGA 59.688 34.615 0.00 0.00 0.00 4.20
7799 8087 5.895216 AGTTAAACTAAAACCACGACGAG 57.105 39.130 0.00 0.00 0.00 4.18
7800 8088 5.351458 AGTTAAACTAAAACCACGACGAGT 58.649 37.500 0.00 0.00 0.00 4.18
7801 8089 6.503524 AGTTAAACTAAAACCACGACGAGTA 58.496 36.000 0.00 0.00 0.00 2.59
7802 8090 6.978080 AGTTAAACTAAAACCACGACGAGTAA 59.022 34.615 0.00 0.00 0.00 2.24
7803 8091 7.653311 AGTTAAACTAAAACCACGACGAGTAAT 59.347 33.333 0.00 0.00 0.00 1.89
7804 8092 6.849588 AAACTAAAACCACGACGAGTAATT 57.150 33.333 0.00 1.08 0.00 1.40
7805 8093 6.849588 AACTAAAACCACGACGAGTAATTT 57.150 33.333 0.00 0.34 0.00 1.82
7806 8094 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
7807 8095 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
7808 8096 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
7809 8097 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
7810 8098 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
7811 8099 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
7812 8100 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
7813 8101 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
7814 8102 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
7815 8103 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
7816 8104 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
7817 8105 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
7818 8106 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
7819 8107 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
7820 8108 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
7821 8109 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
7868 8156 6.335777 GTTCTCATGGAAATTTTGGAGGATG 58.664 40.000 0.00 0.00 35.51 3.51
7949 8237 9.661563 TTGAGTAAAACCGATAAATCTACACAT 57.338 29.630 0.00 0.00 0.00 3.21
7971 8259 2.259618 GCTTCTGCATGCAATTCACAG 58.740 47.619 22.88 8.21 39.41 3.66
7979 8267 3.737047 GCATGCAATTCACAGGGAGAATG 60.737 47.826 14.21 0.00 35.96 2.67
8042 8333 8.100164 TGTTTCTGTGATAGTGATTGAACCATA 58.900 33.333 0.00 0.00 0.00 2.74
8116 8410 5.163723 ACAACAACTTTGATATGCTCCATCG 60.164 40.000 0.00 0.00 0.00 3.84
8118 8412 5.185454 ACAACTTTGATATGCTCCATCGAA 58.815 37.500 0.00 0.00 0.00 3.71
8119 8413 5.065218 ACAACTTTGATATGCTCCATCGAAC 59.935 40.000 0.00 0.00 0.00 3.95
8139 8433 3.710326 CGGTTGAGAGATGATCCGTTA 57.290 47.619 0.00 0.00 34.38 3.18
8140 8434 3.633235 CGGTTGAGAGATGATCCGTTAG 58.367 50.000 0.00 0.00 34.38 2.34
8144 8438 5.067936 GGTTGAGAGATGATCCGTTAGAGAA 59.932 44.000 0.00 0.00 0.00 2.87
8148 8442 6.142818 AGAGATGATCCGTTAGAGAAAGTG 57.857 41.667 0.00 0.00 0.00 3.16
8158 8452 5.346281 CCGTTAGAGAAAGTGTTCATCTCAC 59.654 44.000 4.98 0.00 41.60 3.51
8159 8453 5.920840 CGTTAGAGAAAGTGTTCATCTCACA 59.079 40.000 4.98 0.00 41.60 3.58
8166 8460 6.825721 AGAAAGTGTTCATCTCACAAGACTTT 59.174 34.615 6.64 6.64 44.46 2.66
8173 8467 3.213206 TCTCACAAGACTTTGCCACAT 57.787 42.857 0.00 0.00 37.85 3.21
8174 8468 2.880268 TCTCACAAGACTTTGCCACATG 59.120 45.455 0.00 0.00 37.85 3.21
8175 8469 1.955778 TCACAAGACTTTGCCACATGG 59.044 47.619 0.00 0.00 37.85 3.66
8224 8518 6.800543 TGTCTCATAGTGTTCTAGAAGCATC 58.199 40.000 5.12 0.00 0.00 3.91
8225 8519 6.378280 TGTCTCATAGTGTTCTAGAAGCATCA 59.622 38.462 5.12 0.00 0.00 3.07
8227 8521 7.925483 GTCTCATAGTGTTCTAGAAGCATCATT 59.075 37.037 5.12 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 59 5.245075 TGAGAGAAGAAGGGAAAGAGAAGAC 59.755 44.000 0.00 0.00 0.00 3.01
133 136 1.376812 GGGCGAGAAAATCCACGGT 60.377 57.895 0.00 0.00 0.00 4.83
144 147 1.899054 CGATAGGCAGAGGGCGAGA 60.899 63.158 0.00 0.00 46.16 4.04
171 174 0.826062 GTTCCATGCCCCTTCATTGG 59.174 55.000 0.00 0.00 0.00 3.16
194 197 1.385915 TAGCTGGGGCCTAGGCATT 60.386 57.895 34.09 14.70 44.11 3.56
201 204 2.399580 CTAAAGTACTAGCTGGGGCCT 58.600 52.381 0.84 0.00 39.73 5.19
216 219 8.880750 CGAGGACTAAAAATTCCTAACCTAAAG 58.119 37.037 0.00 0.00 42.68 1.85
228 231 4.324022 CCACCCCTACGAGGACTAAAAATT 60.324 45.833 0.00 0.00 37.67 1.82
270 273 6.370994 CGAAATACTAGATAGAAGGCGAGGTA 59.629 42.308 0.00 0.00 0.00 3.08
282 285 7.411808 AGGATTAGAGCCCGAAATACTAGATA 58.588 38.462 0.00 0.00 0.00 1.98
284 287 5.642165 AGGATTAGAGCCCGAAATACTAGA 58.358 41.667 0.00 0.00 0.00 2.43
287 290 3.579151 GGAGGATTAGAGCCCGAAATACT 59.421 47.826 0.00 0.00 0.00 2.12
330 333 4.792521 ATGTCAAAGCTACTTCGACTCT 57.207 40.909 0.65 0.00 0.00 3.24
391 394 1.324435 CGTCACGCACATATGACAAGG 59.676 52.381 10.38 0.00 44.54 3.61
396 399 0.528470 TCACCGTCACGCACATATGA 59.472 50.000 10.38 0.00 0.00 2.15
421 424 6.214412 ACCCTTGAATCTATCTGAAGTGTCTT 59.786 38.462 0.00 0.00 0.00 3.01
436 439 2.159379 GCCGATGTTGAACCCTTGAATC 60.159 50.000 0.00 0.00 0.00 2.52
437 440 1.818674 GCCGATGTTGAACCCTTGAAT 59.181 47.619 0.00 0.00 0.00 2.57
465 468 1.066143 ACATGTCCCTAAGAGCCAACG 60.066 52.381 0.00 0.00 0.00 4.10
476 505 1.632409 AGTCTTCATGCACATGTCCCT 59.368 47.619 10.27 1.01 39.72 4.20
481 510 1.399440 CGGGAAGTCTTCATGCACATG 59.601 52.381 14.49 4.18 40.09 3.21
489 518 0.316204 GAACGGTCGGGAAGTCTTCA 59.684 55.000 14.49 0.00 0.00 3.02
501 530 3.436496 CCTAATCTTGTCGAGAACGGTC 58.564 50.000 0.00 0.00 38.06 4.79
502 531 2.416972 GCCTAATCTTGTCGAGAACGGT 60.417 50.000 0.00 0.00 38.06 4.83
518 547 0.906775 CCCTACCTTTGTCGGCCTAA 59.093 55.000 0.00 0.00 0.00 2.69
526 555 1.203013 GGGTTGCTTCCCTACCTTTGT 60.203 52.381 9.07 0.00 43.85 2.83
557 586 1.695242 ACCATCGAACAACCACTACCA 59.305 47.619 0.00 0.00 0.00 3.25
563 592 6.642707 AATTTCTAAACCATCGAACAACCA 57.357 33.333 0.00 0.00 0.00 3.67
613 642 9.678260 AAGAAGTTCATGAGAAATACTAAGCAT 57.322 29.630 5.50 0.00 35.08 3.79
698 727 0.535102 GACTCACCAACCACACCAGG 60.535 60.000 0.00 0.00 0.00 4.45
725 754 2.100797 CATGTGCGCATGGGTTCG 59.899 61.111 28.76 5.52 46.47 3.95
753 782 1.202651 ACTATTTCCCATCGGCCTTCG 60.203 52.381 0.00 0.00 40.90 3.79
754 783 2.640316 ACTATTTCCCATCGGCCTTC 57.360 50.000 0.00 0.00 0.00 3.46
755 784 3.009143 GGATACTATTTCCCATCGGCCTT 59.991 47.826 0.00 0.00 0.00 4.35
756 785 2.572104 GGATACTATTTCCCATCGGCCT 59.428 50.000 0.00 0.00 0.00 5.19
758 787 2.618053 CGGATACTATTTCCCATCGGC 58.382 52.381 0.00 0.00 0.00 5.54
760 789 2.259618 CGCGGATACTATTTCCCATCG 58.740 52.381 0.00 0.00 0.00 3.84
761 790 2.993899 CACGCGGATACTATTTCCCATC 59.006 50.000 12.47 0.00 0.00 3.51
762 791 2.289444 CCACGCGGATACTATTTCCCAT 60.289 50.000 12.47 0.00 0.00 4.00
763 792 1.069513 CCACGCGGATACTATTTCCCA 59.930 52.381 12.47 0.00 0.00 4.37
764 793 1.342174 TCCACGCGGATACTATTTCCC 59.658 52.381 12.47 0.00 35.91 3.97
765 794 2.806608 TCCACGCGGATACTATTTCC 57.193 50.000 12.47 0.00 35.91 3.13
808 848 1.256376 CTTCGATTTGTCGAGATGCCG 59.744 52.381 0.66 0.00 43.33 5.69
816 856 1.693083 GGTCCCGCTTCGATTTGTCG 61.693 60.000 0.00 0.00 0.00 4.35
928 968 1.211969 GCGAGCCGACTAGTGTTGA 59.788 57.895 0.00 0.00 0.00 3.18
982 1022 4.802051 TGCTTGGATCTGCCGGCC 62.802 66.667 26.77 8.13 40.66 6.13
1072 1112 0.692419 ATGATCGGGAGAGCCAAGGT 60.692 55.000 0.00 0.00 46.60 3.50
1086 1126 2.860735 CGGAGAAAACGAGGTGATGATC 59.139 50.000 0.00 0.00 0.00 2.92
1266 1306 2.263741 AAAGAGGCCAGCGCACAAG 61.264 57.895 11.47 0.00 36.38 3.16
1279 1329 0.572590 CGTAATCGCTCGCCAAAGAG 59.427 55.000 0.00 0.00 41.03 2.85
1282 1332 1.962092 GCACGTAATCGCTCGCCAAA 61.962 55.000 0.00 0.00 41.18 3.28
1290 1340 4.553101 CCGCGTGCACGTAATCGC 62.553 66.667 36.80 22.38 44.23 4.58
1303 1353 3.726517 CAGCCAAGAACACCCGCG 61.727 66.667 0.00 0.00 0.00 6.46
1329 1379 1.646912 TACGATTGTGGGTCAAGGGA 58.353 50.000 0.00 0.00 39.55 4.20
1332 1382 4.621034 GCAAAAATACGATTGTGGGTCAAG 59.379 41.667 0.00 0.00 39.55 3.02
1334 1384 3.823873 AGCAAAAATACGATTGTGGGTCA 59.176 39.130 0.00 0.00 0.00 4.02
1335 1385 4.165779 CAGCAAAAATACGATTGTGGGTC 58.834 43.478 0.00 0.00 0.00 4.46
1336 1386 3.572255 ACAGCAAAAATACGATTGTGGGT 59.428 39.130 0.00 0.00 0.00 4.51
1340 1390 6.378582 CCTGTAACAGCAAAAATACGATTGT 58.621 36.000 0.00 0.00 0.00 2.71
1341 1391 5.286082 GCCTGTAACAGCAAAAATACGATTG 59.714 40.000 0.00 0.00 0.00 2.67
1342 1392 5.399013 GCCTGTAACAGCAAAAATACGATT 58.601 37.500 0.00 0.00 0.00 3.34
1343 1393 4.142469 GGCCTGTAACAGCAAAAATACGAT 60.142 41.667 0.00 0.00 0.00 3.73
1344 1394 3.189702 GGCCTGTAACAGCAAAAATACGA 59.810 43.478 0.00 0.00 0.00 3.43
1347 1397 3.509575 CCTGGCCTGTAACAGCAAAAATA 59.490 43.478 3.32 0.00 33.43 1.40
1348 1398 2.299867 CCTGGCCTGTAACAGCAAAAAT 59.700 45.455 3.32 0.00 33.43 1.82
1393 1443 0.664761 CAGCATTCCCATCGCGAATT 59.335 50.000 15.24 0.00 0.00 2.17
1485 1535 3.464833 AGATCTGATAAGCAAACCCCCAT 59.535 43.478 0.00 0.00 0.00 4.00
1514 1565 5.046663 CACCAAAACTAATGCCCAAACCTAT 60.047 40.000 0.00 0.00 0.00 2.57
1588 1639 4.141287 CTCTACCCATTCCACAACAAACA 58.859 43.478 0.00 0.00 0.00 2.83
1614 1665 3.017048 TCCAATTCCATGCCAACTAGG 57.983 47.619 0.00 0.00 41.84 3.02
1624 1675 4.296912 TGGCCATACAATTCCAATTCCAT 58.703 39.130 0.00 0.00 0.00 3.41
1630 1681 7.905265 CCATATTAATGGCCATACAATTCCAA 58.095 34.615 21.15 7.09 46.17 3.53
1652 1739 6.294342 CGAAATAACATGAATCAGCATCCCAT 60.294 38.462 0.00 0.00 0.00 4.00
1678 1765 4.802039 CACTCATGCATTCAATAAACCAGC 59.198 41.667 0.00 0.00 0.00 4.85
1719 1806 1.986210 GATGCAGCCAAGCCCCTTT 60.986 57.895 0.00 0.00 0.00 3.11
1829 1916 8.142994 ACACACATTCTAAAGTACTTTCACAG 57.857 34.615 23.76 15.79 34.23 3.66
1853 1945 7.542025 AGATGGTTTCAATATTCTCTTGCAAC 58.458 34.615 0.00 0.00 31.64 4.17
1926 2018 3.056821 GCTCCAGCTAAAACCCGAAAATT 60.057 43.478 0.00 0.00 38.21 1.82
1929 2021 1.202830 TGCTCCAGCTAAAACCCGAAA 60.203 47.619 0.00 0.00 42.66 3.46
2035 2130 8.642935 TTTCTTTCCATGACAATTACCATACA 57.357 30.769 0.00 0.00 0.00 2.29
2051 2146 3.283751 TGACGCCTTTTCTTTCTTTCCA 58.716 40.909 0.00 0.00 0.00 3.53
2089 2184 6.828273 TCCATATGTTAGTTTGCTGTGCTATT 59.172 34.615 1.24 0.00 0.00 1.73
2121 2216 6.215121 TGAAGTGAAACATAATGGCAACTTG 58.785 36.000 0.00 0.00 41.43 3.16
2357 2452 7.087639 AGAATAAGTCGATAGCTAGACAATGC 58.912 38.462 13.80 6.98 39.67 3.56
2406 2501 2.898920 ATTGCACATCAGGGCTCCCG 62.899 60.000 0.00 0.00 41.95 5.14
2463 2558 3.726190 GCATGACGACTGCTTCTTTTAGC 60.726 47.826 0.00 0.00 41.59 3.09
2558 2653 2.560504 TGGTGCAGTTGAACACACTAG 58.439 47.619 17.19 0.00 38.57 2.57
2574 2669 0.819582 GGAAGGGCACAATGATGGTG 59.180 55.000 0.00 0.00 39.25 4.17
2612 2707 2.351157 GCCATCACACAAAGAAGCTGAC 60.351 50.000 0.00 0.00 0.00 3.51
2653 2748 7.925483 CACTACCTTCCTTCTCTGAATCTATTG 59.075 40.741 0.00 0.00 0.00 1.90
2658 2753 5.923733 TCACTACCTTCCTTCTCTGAATC 57.076 43.478 0.00 0.00 0.00 2.52
2675 2770 6.169557 TCTGCTACAAAAAGACCTTCACTA 57.830 37.500 0.00 0.00 0.00 2.74
2777 2874 6.096846 GGATAATTCATGGTAGTTGGTTGCTT 59.903 38.462 0.00 0.00 0.00 3.91
2824 2921 4.535526 AGCCGTTATTTTGCCATTCTTT 57.464 36.364 0.00 0.00 0.00 2.52
2849 2946 2.029020 TGCTCTTCTCAAGTGTGCGTAT 60.029 45.455 0.00 0.00 0.00 3.06
2852 2949 0.510359 GTGCTCTTCTCAAGTGTGCG 59.490 55.000 0.00 0.00 0.00 5.34
2944 3046 6.183360 CGCGACTATCACTTTCCAATTAAGTT 60.183 38.462 0.00 0.00 33.73 2.66
2947 3049 5.172934 ACGCGACTATCACTTTCCAATTAA 58.827 37.500 15.93 0.00 0.00 1.40
2958 3070 4.792528 AGTAGACTAACGCGACTATCAC 57.207 45.455 15.93 1.96 0.00 3.06
3009 3121 1.224592 CCCCCAGACCATTCCGAAG 59.775 63.158 0.00 0.00 0.00 3.79
3028 3140 1.217916 TCCAAACCCACACCTCAGAA 58.782 50.000 0.00 0.00 0.00 3.02
3342 3454 7.079451 AGTGATTTATAATGTCCTAGGGTGG 57.921 40.000 9.46 0.00 0.00 4.61
3349 3461 9.823647 CAGTGAAGTAGTGATTTATAATGTCCT 57.176 33.333 0.00 0.00 30.94 3.85
3489 3601 2.033194 GTGAGCTTGGGTGCGGTAC 61.033 63.158 0.00 0.00 38.13 3.34
3493 3605 2.693762 CCATGTGAGCTTGGGTGCG 61.694 63.158 0.00 0.00 36.57 5.34
3512 3624 9.231297 TGATCCTCTGAAAAGTAAATTAAGTGG 57.769 33.333 0.00 0.00 0.00 4.00
3600 3713 8.795786 TTATGCAGACTACAAATCAACAAAAC 57.204 30.769 0.00 0.00 0.00 2.43
3667 3781 5.460748 GTGGACTGAAAAATAAACAAACCCG 59.539 40.000 0.00 0.00 0.00 5.28
3824 3942 3.117851 TGTTGGGTTTGTACATCCACTCA 60.118 43.478 16.09 8.76 0.00 3.41
3871 3999 5.986135 CCTGGTCGTCAAGAATAAATAGGAG 59.014 44.000 0.00 0.00 0.00 3.69
3888 4016 1.439679 GTACCAAGAAAGCCTGGTCG 58.560 55.000 0.00 0.00 35.99 4.79
3949 4077 7.118723 AGCATGAGTACCAGGATTTTTAATCA 58.881 34.615 0.00 0.00 0.00 2.57
3985 4113 1.369091 GCACCAACTAGGGATGCACG 61.369 60.000 0.00 0.00 43.89 5.34
4012 4140 2.145397 GGGGAGAATTTCACTTCCCC 57.855 55.000 20.02 20.02 45.11 4.81
4288 4488 4.776322 CCGCCTTGCACCGATCCA 62.776 66.667 2.51 0.00 0.00 3.41
4320 4520 3.998672 GAAGACCGACCCACGCCA 61.999 66.667 0.00 0.00 41.07 5.69
4331 4531 4.090057 GCACCGCGCTTGAAGACC 62.090 66.667 5.56 0.00 37.77 3.85
4452 4669 1.808411 GAACTGGATCAACGAAGCCA 58.192 50.000 0.00 0.00 0.00 4.75
4497 4714 1.467920 GACTATGGCCAAAGCAAGCT 58.532 50.000 10.96 0.00 42.56 3.74
4501 4719 0.901827 TCTCGACTATGGCCAAAGCA 59.098 50.000 10.96 0.00 42.56 3.91
4511 4729 4.442192 GCCACCTTCAAAGATCTCGACTAT 60.442 45.833 0.00 0.00 0.00 2.12
4524 4742 1.243342 CGCCAGATTGCCACCTTCAA 61.243 55.000 0.00 0.00 0.00 2.69
4715 4935 2.731976 GCCGTCATCTTATTGATCGACC 59.268 50.000 0.00 0.00 33.61 4.79
4723 4943 0.102481 AGCGTCGCCGTCATCTTATT 59.898 50.000 14.86 0.00 36.15 1.40
4724 4944 0.317938 GAGCGTCGCCGTCATCTTAT 60.318 55.000 14.86 0.00 36.15 1.73
4725 4945 1.063649 GAGCGTCGCCGTCATCTTA 59.936 57.895 14.86 0.00 36.15 2.10
4726 4946 2.202623 GAGCGTCGCCGTCATCTT 60.203 61.111 14.86 0.00 36.15 2.40
4818 5038 3.254024 ATGAAACGCCGCTCCACCT 62.254 57.895 0.00 0.00 0.00 4.00
4880 5100 4.907034 CATCCGTCGCCGAGACCG 62.907 72.222 0.00 0.00 46.92 4.79
4914 5134 2.340809 CAACGCCACCTCCGTACA 59.659 61.111 0.00 0.00 38.06 2.90
4956 5176 4.020617 CGACCTTGCCAGGCCTGA 62.021 66.667 34.91 12.85 45.56 3.86
4985 5205 2.762887 ACCGATCAATCTTCAGAGCAGA 59.237 45.455 0.00 0.00 0.00 4.26
4999 5219 0.037697 CAACCGTCTTCCACCGATCA 60.038 55.000 0.00 0.00 0.00 2.92
5262 5520 4.980592 TGACCCCTGGCCTCTGCA 62.981 66.667 3.32 0.00 40.13 4.41
5265 5523 2.367512 GGATGACCCCTGGCCTCT 60.368 66.667 3.32 0.00 0.00 3.69
5267 5525 2.367512 GAGGATGACCCCTGGCCT 60.368 66.667 3.32 0.00 36.49 5.19
5268 5526 3.493303 GGAGGATGACCCCTGGCC 61.493 72.222 0.00 0.00 36.49 5.36
5269 5527 1.575447 AAAGGAGGATGACCCCTGGC 61.575 60.000 0.00 0.00 37.09 4.85
5270 5528 1.002857 AAAAGGAGGATGACCCCTGG 58.997 55.000 0.00 0.00 37.09 4.45
5271 5529 1.635487 TGAAAAGGAGGATGACCCCTG 59.365 52.381 0.00 0.00 37.09 4.45
5272 5530 2.059756 TGAAAAGGAGGATGACCCCT 57.940 50.000 0.00 0.00 38.08 4.79
5327 5587 7.535940 TCACAAAGAAAAGAAAAACTACACGTG 59.464 33.333 15.48 15.48 0.00 4.49
5334 5594 6.398095 CCACCTCACAAAGAAAAGAAAAACT 58.602 36.000 0.00 0.00 0.00 2.66
5336 5596 5.247337 ACCCACCTCACAAAGAAAAGAAAAA 59.753 36.000 0.00 0.00 0.00 1.94
5341 5601 2.362077 CCACCCACCTCACAAAGAAAAG 59.638 50.000 0.00 0.00 0.00 2.27
5424 5685 6.350110 GCAACACAAGGAATTCTTAATAGCCA 60.350 38.462 5.23 0.00 33.68 4.75
5535 5805 2.223203 GCTGACAATTGATGAAGCCGAG 60.223 50.000 13.59 0.00 36.73 4.63
5988 6258 7.201920 GCTTAGGAGATCATGTAGTAGGAAACA 60.202 40.741 0.00 0.00 0.00 2.83
6014 6284 1.078848 AGCACGCTTCAAGCTAGGG 60.079 57.895 8.02 0.00 39.60 3.53
6190 6461 5.591099 ACTTGGAATAAAAACACAGCACTG 58.409 37.500 0.00 0.00 0.00 3.66
6194 6465 6.902224 AACAACTTGGAATAAAAACACAGC 57.098 33.333 0.00 0.00 0.00 4.40
6312 6583 4.868171 CCAAAGCATGACTGAAATGATTGG 59.132 41.667 0.00 12.69 37.28 3.16
6314 6585 5.733620 ACCAAAGCATGACTGAAATGATT 57.266 34.783 0.00 0.00 35.26 2.57
6331 6602 6.529220 CCCCACAAAAGAATATTCAACCAAA 58.471 36.000 17.56 0.00 0.00 3.28
6416 6695 6.264744 ACATCTCAAGCATCCATTTCCATAAG 59.735 38.462 0.00 0.00 0.00 1.73
6488 6767 9.626045 GCCCAGTAAAGAAACAATATTATATGC 57.374 33.333 0.00 0.00 0.00 3.14
6666 6945 6.260936 GGAATGTTTCCTACATATCACACCTG 59.739 42.308 0.00 0.00 46.75 4.00
6779 7063 3.745975 GCAAAAGTTCCTTAAACATGGCC 59.254 43.478 0.00 0.00 40.56 5.36
6997 7281 9.912634 ATTGTATTTCACAGGAAAGTACAAATG 57.087 29.630 18.04 0.00 45.58 2.32
7232 7516 2.349886 GCTGATCGTGGTTTGCTCTTAG 59.650 50.000 0.00 0.00 0.00 2.18
7276 7560 2.502538 ACATGCTTGGCAAGGCATATTT 59.497 40.909 27.25 14.75 45.82 1.40
7286 7570 5.973899 TTTTATTGACTACATGCTTGGCA 57.026 34.783 4.44 0.00 44.86 4.92
7397 7685 4.216042 TCTGTACCAGTGCATGTTCAAATG 59.784 41.667 0.00 0.00 32.61 2.32
7409 7697 3.452474 GCAAGATAGCTCTGTACCAGTG 58.548 50.000 0.00 0.00 32.61 3.66
7419 7707 3.543680 TGTTGTAGGGCAAGATAGCTC 57.456 47.619 0.00 0.00 37.83 4.09
7434 7722 1.039856 GATTGGTGTGGCCTTGTTGT 58.960 50.000 3.32 0.00 38.35 3.32
7435 7723 1.039068 TGATTGGTGTGGCCTTGTTG 58.961 50.000 3.32 0.00 38.35 3.33
7436 7724 1.786937 TTGATTGGTGTGGCCTTGTT 58.213 45.000 3.32 0.00 38.35 2.83
7670 7958 9.643693 CAACATGCCTAACATTTATTTCTTTCT 57.356 29.630 0.00 0.00 36.64 2.52
7675 7963 9.248291 CCATACAACATGCCTAACATTTATTTC 57.752 33.333 0.00 0.00 36.64 2.17
7697 7985 6.620877 AGAACTGGACTGTAATGTTCCATA 57.379 37.500 12.45 0.00 38.10 2.74
7737 8025 1.838077 AGTAATTTGGGACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
7738 8026 1.835531 GAGTAATTTGGGACGGAGGGA 59.164 52.381 0.00 0.00 0.00 4.20
7739 8027 1.472728 CGAGTAATTTGGGACGGAGGG 60.473 57.143 0.00 0.00 0.00 4.30
7740 8028 1.206371 ACGAGTAATTTGGGACGGAGG 59.794 52.381 0.00 0.00 0.00 4.30
7741 8029 2.537401 GACGAGTAATTTGGGACGGAG 58.463 52.381 0.00 0.00 0.00 4.63
7742 8030 1.135315 CGACGAGTAATTTGGGACGGA 60.135 52.381 0.00 0.00 0.00 4.69
7743 8031 1.274596 CGACGAGTAATTTGGGACGG 58.725 55.000 0.00 0.00 0.00 4.79
7744 8032 1.652124 CACGACGAGTAATTTGGGACG 59.348 52.381 0.00 0.00 0.00 4.79
7745 8033 1.997606 CCACGACGAGTAATTTGGGAC 59.002 52.381 0.00 0.00 0.00 4.46
7746 8034 1.619827 ACCACGACGAGTAATTTGGGA 59.380 47.619 0.00 0.00 0.00 4.37
7747 8035 2.088950 ACCACGACGAGTAATTTGGG 57.911 50.000 0.00 0.00 0.00 4.12
7748 8036 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
7749 8037 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
7750 8038 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
7751 8039 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
7752 8040 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
7753 8041 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
7754 8042 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
7755 8043 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
7756 8044 4.269363 ACTTTGAACTAAAACCACGACGAG 59.731 41.667 0.00 0.00 0.00 4.18
7757 8045 4.183101 ACTTTGAACTAAAACCACGACGA 58.817 39.130 0.00 0.00 0.00 4.20
7758 8046 4.525411 ACTTTGAACTAAAACCACGACG 57.475 40.909 0.00 0.00 0.00 5.12
7759 8047 7.964559 AGTTTAACTTTGAACTAAAACCACGAC 59.035 33.333 0.00 0.00 35.55 4.34
7760 8048 8.042944 AGTTTAACTTTGAACTAAAACCACGA 57.957 30.769 0.00 0.00 35.55 4.35
7761 8049 9.771915 TTAGTTTAACTTTGAACTAAAACCACG 57.228 29.630 13.73 0.00 42.51 4.94
7768 8056 9.771915 CGTGGTTTTAGTTTAACTTTGAACTAA 57.228 29.630 12.61 12.61 43.23 2.24
7769 8057 9.160496 TCGTGGTTTTAGTTTAACTTTGAACTA 57.840 29.630 1.94 2.99 37.96 2.24
7770 8058 7.964559 GTCGTGGTTTTAGTTTAACTTTGAACT 59.035 33.333 1.94 4.72 39.80 3.01
7771 8059 7.045419 CGTCGTGGTTTTAGTTTAACTTTGAAC 60.045 37.037 1.94 6.22 0.00 3.18
7772 8060 6.960431 CGTCGTGGTTTTAGTTTAACTTTGAA 59.040 34.615 1.94 0.00 0.00 2.69
7773 8061 6.312426 TCGTCGTGGTTTTAGTTTAACTTTGA 59.688 34.615 1.94 0.00 0.00 2.69
7774 8062 6.476896 TCGTCGTGGTTTTAGTTTAACTTTG 58.523 36.000 1.94 0.00 0.00 2.77
7775 8063 6.313658 ACTCGTCGTGGTTTTAGTTTAACTTT 59.686 34.615 1.94 0.00 0.00 2.66
7776 8064 5.812127 ACTCGTCGTGGTTTTAGTTTAACTT 59.188 36.000 1.94 0.00 0.00 2.66
7777 8065 5.351458 ACTCGTCGTGGTTTTAGTTTAACT 58.649 37.500 2.32 2.32 0.00 2.24
7778 8066 5.641777 ACTCGTCGTGGTTTTAGTTTAAC 57.358 39.130 0.00 0.00 0.00 2.01
7779 8067 7.945033 ATTACTCGTCGTGGTTTTAGTTTAA 57.055 32.000 0.00 0.00 0.00 1.52
7780 8068 7.945033 AATTACTCGTCGTGGTTTTAGTTTA 57.055 32.000 0.00 0.00 0.00 2.01
7781 8069 6.849588 AATTACTCGTCGTGGTTTTAGTTT 57.150 33.333 0.00 0.00 0.00 2.66
7782 8070 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
7783 8071 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
7784 8072 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
7785 8073 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
7786 8074 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
7787 8075 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
7788 8076 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
7789 8077 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
7790 8078 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
7791 8079 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
7792 8080 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
7793 8081 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
7794 8082 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
7795 8083 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
7796 8084 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
7797 8085 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
7798 8086 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
7799 8087 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
7800 8088 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
7801 8089 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
7802 8090 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
7803 8091 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
7804 8092 2.622452 CCTAGTACTCCCTCCGTTCCAA 60.622 54.545 0.00 0.00 0.00 3.53
7805 8093 1.064166 CCTAGTACTCCCTCCGTTCCA 60.064 57.143 0.00 0.00 0.00 3.53
7806 8094 1.689984 CCTAGTACTCCCTCCGTTCC 58.310 60.000 0.00 0.00 0.00 3.62
7807 8095 1.064091 ACCCTAGTACTCCCTCCGTTC 60.064 57.143 0.00 0.00 0.00 3.95
7808 8096 1.006020 ACCCTAGTACTCCCTCCGTT 58.994 55.000 0.00 0.00 0.00 4.44
7809 8097 1.006020 AACCCTAGTACTCCCTCCGT 58.994 55.000 0.00 0.00 0.00 4.69
7810 8098 2.030371 GAAACCCTAGTACTCCCTCCG 58.970 57.143 0.00 0.00 0.00 4.63
7811 8099 3.401589 AGAAACCCTAGTACTCCCTCC 57.598 52.381 0.00 0.00 0.00 4.30
7812 8100 3.380954 CGAAGAAACCCTAGTACTCCCTC 59.619 52.174 0.00 0.00 0.00 4.30
7813 8101 3.363627 CGAAGAAACCCTAGTACTCCCT 58.636 50.000 0.00 0.00 0.00 4.20
7814 8102 2.159128 GCGAAGAAACCCTAGTACTCCC 60.159 54.545 0.00 0.00 0.00 4.30
7815 8103 2.759535 AGCGAAGAAACCCTAGTACTCC 59.240 50.000 0.00 0.00 0.00 3.85
7816 8104 4.082354 TGAAGCGAAGAAACCCTAGTACTC 60.082 45.833 0.00 0.00 0.00 2.59
7817 8105 3.830755 TGAAGCGAAGAAACCCTAGTACT 59.169 43.478 0.00 0.00 0.00 2.73
7818 8106 4.184079 TGAAGCGAAGAAACCCTAGTAC 57.816 45.455 0.00 0.00 0.00 2.73
7819 8107 4.877378 TTGAAGCGAAGAAACCCTAGTA 57.123 40.909 0.00 0.00 0.00 1.82
7820 8108 3.764237 TTGAAGCGAAGAAACCCTAGT 57.236 42.857 0.00 0.00 0.00 2.57
7821 8109 3.437049 CCTTTGAAGCGAAGAAACCCTAG 59.563 47.826 0.00 0.00 0.00 3.02
7868 8156 7.541122 ACGGAAAACATTCTTAAGAGATAGC 57.459 36.000 5.12 0.00 0.00 2.97
7922 8210 9.661563 TGTGTAGATTTATCGGTTTTACTCAAT 57.338 29.630 0.00 0.00 0.00 2.57
7933 8221 6.653183 CAGAAGCAATGTGTAGATTTATCGG 58.347 40.000 0.00 0.00 0.00 4.18
7971 8259 6.927294 AATCGTCTAAATGAACATTCTCCC 57.073 37.500 0.45 0.00 0.00 4.30
8002 8293 7.524294 TCACAGAAACAAAGCAATTTTCTTC 57.476 32.000 0.00 0.00 37.46 2.87
8005 8296 8.482429 CACTATCACAGAAACAAAGCAATTTTC 58.518 33.333 0.00 0.00 0.00 2.29
8009 8300 6.882610 TCACTATCACAGAAACAAAGCAAT 57.117 33.333 0.00 0.00 0.00 3.56
8116 8410 2.464865 CGGATCATCTCTCAACCGTTC 58.535 52.381 0.00 0.00 36.38 3.95
8118 8412 1.475403 ACGGATCATCTCTCAACCGT 58.525 50.000 0.00 0.00 46.69 4.83
8119 8413 2.586258 AACGGATCATCTCTCAACCG 57.414 50.000 0.00 0.00 44.77 4.44
8139 8433 5.988561 GTCTTGTGAGATGAACACTTTCTCT 59.011 40.000 0.00 0.00 37.40 3.10
8140 8434 5.988561 AGTCTTGTGAGATGAACACTTTCTC 59.011 40.000 0.00 0.00 38.81 2.87
8144 8438 5.220931 GCAAAGTCTTGTGAGATGAACACTT 60.221 40.000 0.00 0.00 38.81 3.16
8148 8442 3.565482 TGGCAAAGTCTTGTGAGATGAAC 59.435 43.478 0.00 0.00 34.79 3.18
8173 8467 3.153919 GTGGTGGTTCAATTAAGAGCCA 58.846 45.455 0.00 0.00 45.12 4.75
8174 8468 3.421844 AGTGGTGGTTCAATTAAGAGCC 58.578 45.455 0.00 0.00 39.14 4.70
8175 8469 4.327680 AGAGTGGTGGTTCAATTAAGAGC 58.672 43.478 0.00 0.00 0.00 4.09
8176 8470 7.607991 ACAATAGAGTGGTGGTTCAATTAAGAG 59.392 37.037 0.00 0.00 0.00 2.85
8177 8471 7.458397 ACAATAGAGTGGTGGTTCAATTAAGA 58.542 34.615 0.00 0.00 0.00 2.10
8178 8472 7.607991 AGACAATAGAGTGGTGGTTCAATTAAG 59.392 37.037 0.00 0.00 0.00 1.85
8179 8473 7.458397 AGACAATAGAGTGGTGGTTCAATTAA 58.542 34.615 0.00 0.00 0.00 1.40
8180 8474 7.016153 AGACAATAGAGTGGTGGTTCAATTA 57.984 36.000 0.00 0.00 0.00 1.40
8181 8475 5.880901 AGACAATAGAGTGGTGGTTCAATT 58.119 37.500 0.00 0.00 0.00 2.32
8182 8476 5.013079 TGAGACAATAGAGTGGTGGTTCAAT 59.987 40.000 0.00 0.00 0.00 2.57
8183 8477 4.346709 TGAGACAATAGAGTGGTGGTTCAA 59.653 41.667 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.