Multiple sequence alignment - TraesCS3A01G294300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G294300 chr3A 100.000 5787 0 0 1 5787 527941978 527936192 0.000000e+00 10687.0
1 TraesCS3A01G294300 chr3A 90.998 411 31 6 5100 5507 73608246 73607839 3.050000e-152 549.0
2 TraesCS3A01G294300 chr3A 91.667 48 4 0 3275 3322 496990082 496990035 3.740000e-07 67.6
3 TraesCS3A01G294300 chr3D 93.387 2253 96 20 2840 5076 405374022 405371807 0.000000e+00 3286.0
4 TraesCS3A01G294300 chr3D 87.343 1517 87 50 411 1885 405379101 405377648 0.000000e+00 1640.0
5 TraesCS3A01G294300 chr3D 89.429 700 27 13 1860 2534 405377620 405376943 0.000000e+00 839.0
6 TraesCS3A01G294300 chr3D 91.620 179 10 2 2625 2802 405374271 405374097 5.790000e-60 243.0
7 TraesCS3A01G294300 chr3D 91.667 48 4 0 3275 3322 374358841 374358794 3.740000e-07 67.6
8 TraesCS3A01G294300 chr3B 88.018 1569 101 38 411 1955 531403853 531402348 0.000000e+00 1775.0
9 TraesCS3A01G294300 chr3B 94.351 956 46 3 4122 5076 531400002 531399054 0.000000e+00 1459.0
10 TraesCS3A01G294300 chr3B 94.235 902 42 4 3138 4033 531400937 531400040 0.000000e+00 1369.0
11 TraesCS3A01G294300 chr3B 91.946 596 18 8 1999 2576 531402353 531401770 0.000000e+00 808.0
12 TraesCS3A01G294300 chr3B 86.533 349 32 7 66 410 531404235 531403898 2.550000e-98 370.0
13 TraesCS3A01G294300 chr3B 87.600 250 10 5 2892 3141 531401245 531401017 2.660000e-68 270.0
14 TraesCS3A01G294300 chr3B 91.061 179 11 2 2625 2802 531401751 531401577 2.700000e-58 237.0
15 TraesCS3A01G294300 chr3B 80.460 87 12 4 3276 3361 309411053 309410971 1.740000e-05 62.1
16 TraesCS3A01G294300 chr5B 97.529 688 16 1 5100 5787 317060474 317061160 0.000000e+00 1175.0
17 TraesCS3A01G294300 chr5B 99.338 151 1 0 5637 5787 317061303 317061453 2.050000e-69 274.0
18 TraesCS3A01G294300 chr5B 81.928 83 12 3 3277 3359 415344099 415344178 3.740000e-07 67.6
19 TraesCS3A01G294300 chr1A 97.357 681 18 0 5107 5787 504274700 504274020 0.000000e+00 1158.0
20 TraesCS3A01G294300 chr1A 97.059 34 1 0 3270 3303 11940904 11940871 2.250000e-04 58.4
21 TraesCS3A01G294300 chr7A 96.081 689 23 2 5100 5787 209401047 209400362 0.000000e+00 1120.0
22 TraesCS3A01G294300 chr7A 90.476 42 1 1 3263 3304 343172482 343172520 1.000000e-02 52.8
23 TraesCS3A01G294300 chr2B 94.049 689 38 3 5100 5787 769921618 769920932 0.000000e+00 1042.0
24 TraesCS3A01G294300 chr2D 92.344 627 46 1 5154 5780 637752528 637753152 0.000000e+00 891.0
25 TraesCS3A01G294300 chr2D 92.414 580 42 2 5100 5678 381051612 381052190 0.000000e+00 826.0
26 TraesCS3A01G294300 chr2D 94.958 119 6 0 5669 5787 381060393 381060511 2.750000e-43 187.0
27 TraesCS3A01G294300 chr7D 93.540 387 23 2 5100 5485 39586203 39586588 5.030000e-160 575.0
28 TraesCS3A01G294300 chr6B 87.579 475 46 10 5100 5570 96675135 96675600 6.600000e-149 538.0
29 TraesCS3A01G294300 chr5D 90.295 237 20 1 5554 5787 160874222 160874458 2.030000e-79 307.0
30 TraesCS3A01G294300 chr4A 89.583 48 5 0 3270 3317 684505007 684505054 1.740000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G294300 chr3A 527936192 527941978 5786 True 10687.000000 10687 100.000000 1 5787 1 chr3A.!!$R3 5786
1 TraesCS3A01G294300 chr3D 405371807 405379101 7294 True 1502.000000 3286 90.444750 411 5076 4 chr3D.!!$R2 4665
2 TraesCS3A01G294300 chr3B 531399054 531404235 5181 True 898.285714 1775 90.534857 66 5076 7 chr3B.!!$R2 5010
3 TraesCS3A01G294300 chr5B 317060474 317061453 979 False 724.500000 1175 98.433500 5100 5787 2 chr5B.!!$F2 687
4 TraesCS3A01G294300 chr1A 504274020 504274700 680 True 1158.000000 1158 97.357000 5107 5787 1 chr1A.!!$R2 680
5 TraesCS3A01G294300 chr7A 209400362 209401047 685 True 1120.000000 1120 96.081000 5100 5787 1 chr7A.!!$R1 687
6 TraesCS3A01G294300 chr2B 769920932 769921618 686 True 1042.000000 1042 94.049000 5100 5787 1 chr2B.!!$R1 687
7 TraesCS3A01G294300 chr2D 637752528 637753152 624 False 891.000000 891 92.344000 5154 5780 1 chr2D.!!$F3 626
8 TraesCS3A01G294300 chr2D 381051612 381052190 578 False 826.000000 826 92.414000 5100 5678 1 chr2D.!!$F1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 601 0.100682 TACTAGCAGCACTGTAGCGC 59.899 55.0 0.00 0.0 40.15 5.92 F
1499 1583 0.031314 CGCGTGCTCTCATACTCCAT 59.969 55.0 0.00 0.0 0.00 3.41 F
2281 2452 0.032952 TTTACGCGTCTTGGTCTGCT 59.967 50.0 18.63 0.0 0.00 4.24 F
3610 6758 0.608130 ACGTATCCACTTGAGCTGCA 59.392 50.0 1.02 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2068 2231 0.250038 ATTGCAGCGCGTGATATCCT 60.250 50.0 8.43 0.0 0.00 3.24 R
2799 5601 0.179100 ACTAGCCGCACAGCATACAG 60.179 55.0 0.00 0.0 34.23 2.74 R
3970 7118 0.251916 CGTTGTCAAGGATAGGCCCA 59.748 55.0 0.00 0.0 37.37 5.36 R
4807 7976 0.625849 CCTTGCAGGGGAGGTTACAT 59.374 55.0 7.05 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.210857 GAAGCGCCACTAGTGTTCA 57.789 52.632 21.18 0.00 0.00 3.18
19 20 1.071605 GAAGCGCCACTAGTGTTCAG 58.928 55.000 21.18 7.27 0.00 3.02
20 21 0.679505 AAGCGCCACTAGTGTTCAGA 59.320 50.000 21.18 0.00 0.00 3.27
21 22 0.679505 AGCGCCACTAGTGTTCAGAA 59.320 50.000 21.18 0.00 0.00 3.02
22 23 1.071605 GCGCCACTAGTGTTCAGAAG 58.928 55.000 21.18 5.48 0.00 2.85
23 24 1.605712 GCGCCACTAGTGTTCAGAAGT 60.606 52.381 21.18 0.00 0.00 3.01
24 25 2.061773 CGCCACTAGTGTTCAGAAGTG 58.938 52.381 21.18 7.11 39.22 3.16
27 28 2.417719 CACTAGTGTTCAGAAGTGGCC 58.582 52.381 15.06 0.00 36.53 5.36
28 29 2.047061 ACTAGTGTTCAGAAGTGGCCA 58.953 47.619 0.00 0.00 0.00 5.36
29 30 2.037772 ACTAGTGTTCAGAAGTGGCCAG 59.962 50.000 5.11 0.00 0.00 4.85
30 31 0.536006 AGTGTTCAGAAGTGGCCAGC 60.536 55.000 5.11 0.39 0.00 4.85
31 32 0.819259 GTGTTCAGAAGTGGCCAGCA 60.819 55.000 5.11 0.00 0.00 4.41
32 33 0.819259 TGTTCAGAAGTGGCCAGCAC 60.819 55.000 5.11 0.00 0.00 4.40
33 34 1.228245 TTCAGAAGTGGCCAGCACC 60.228 57.895 5.11 0.00 0.00 5.01
34 35 3.052082 CAGAAGTGGCCAGCACCG 61.052 66.667 5.11 0.00 0.00 4.94
35 36 3.560251 AGAAGTGGCCAGCACCGT 61.560 61.111 5.11 0.00 0.00 4.83
36 37 3.357079 GAAGTGGCCAGCACCGTG 61.357 66.667 5.11 0.00 0.00 4.94
37 38 3.825160 GAAGTGGCCAGCACCGTGA 62.825 63.158 5.11 0.00 0.00 4.35
38 39 4.626081 AGTGGCCAGCACCGTGAC 62.626 66.667 5.11 0.00 0.00 3.67
39 40 4.626081 GTGGCCAGCACCGTGACT 62.626 66.667 5.11 0.00 0.00 3.41
40 41 3.872603 TGGCCAGCACCGTGACTT 61.873 61.111 0.00 0.00 0.00 3.01
41 42 2.345991 GGCCAGCACCGTGACTTA 59.654 61.111 1.65 0.00 0.00 2.24
42 43 1.078426 GGCCAGCACCGTGACTTAT 60.078 57.895 1.65 0.00 0.00 1.73
43 44 0.676782 GGCCAGCACCGTGACTTATT 60.677 55.000 1.65 0.00 0.00 1.40
44 45 1.406341 GGCCAGCACCGTGACTTATTA 60.406 52.381 1.65 0.00 0.00 0.98
45 46 2.561569 GCCAGCACCGTGACTTATTAT 58.438 47.619 1.65 0.00 0.00 1.28
46 47 3.493699 GGCCAGCACCGTGACTTATTATA 60.494 47.826 1.65 0.00 0.00 0.98
47 48 4.124238 GCCAGCACCGTGACTTATTATAA 58.876 43.478 1.65 0.00 0.00 0.98
48 49 4.025145 GCCAGCACCGTGACTTATTATAAC 60.025 45.833 1.65 0.00 0.00 1.89
49 50 5.113383 CCAGCACCGTGACTTATTATAACA 58.887 41.667 1.65 0.00 0.00 2.41
50 51 5.583061 CCAGCACCGTGACTTATTATAACAA 59.417 40.000 1.65 0.00 0.00 2.83
51 52 6.260050 CCAGCACCGTGACTTATTATAACAAT 59.740 38.462 1.65 0.00 0.00 2.71
52 53 7.439955 CCAGCACCGTGACTTATTATAACAATA 59.560 37.037 1.65 0.00 0.00 1.90
53 54 8.822855 CAGCACCGTGACTTATTATAACAATAA 58.177 33.333 1.65 0.00 0.00 1.40
54 55 9.555727 AGCACCGTGACTTATTATAACAATAAT 57.444 29.630 1.65 0.00 0.00 1.28
78 79 8.928270 ATAATTTAGATTATAGAAGGCCGTCG 57.072 34.615 13.29 0.00 36.83 5.12
84 85 1.445716 ATAGAAGGCCGTCGGTCTCG 61.446 60.000 20.72 0.00 36.17 4.04
102 103 1.834301 GCCCGGTATTCTTGCCCTA 59.166 57.895 0.00 0.00 0.00 3.53
103 104 0.400594 GCCCGGTATTCTTGCCCTAT 59.599 55.000 0.00 0.00 0.00 2.57
104 105 1.882352 GCCCGGTATTCTTGCCCTATG 60.882 57.143 0.00 0.00 0.00 2.23
122 123 2.936919 TGGCACTCAAACATGTCTCT 57.063 45.000 0.00 0.00 0.00 3.10
128 129 4.376819 GCACTCAAACATGTCTCTCTTTCG 60.377 45.833 0.00 0.00 0.00 3.46
147 148 2.027285 TCGGAGATGCTGATGGTTTTCA 60.027 45.455 0.00 0.00 0.00 2.69
157 158 2.064014 GATGGTTTTCAGCTGCTTTGC 58.936 47.619 9.47 0.00 0.00 3.68
158 159 0.248990 TGGTTTTCAGCTGCTTTGCG 60.249 50.000 9.47 0.00 38.13 4.85
172 173 1.448922 TTTGCGTGCAACCACCTACC 61.449 55.000 6.80 0.00 38.79 3.18
183 184 3.329929 ACCACCTACCTAAAGCGAAAG 57.670 47.619 0.00 0.00 0.00 2.62
202 206 5.164138 CGAAAGCGCTTATCTATTCTACTGC 60.164 44.000 25.33 0.00 0.00 4.40
211 215 9.015577 GCTTATCTATTCTACTGCATTATCGAC 57.984 37.037 0.00 0.00 0.00 4.20
219 223 1.588404 CTGCATTATCGACGTGTCACC 59.412 52.381 0.00 0.00 0.00 4.02
231 235 2.289547 ACGTGTCACCGAATTTCCTTTG 59.710 45.455 0.00 0.00 0.00 2.77
239 243 2.030274 CCGAATTTCCTTTGGCTCGTTT 60.030 45.455 0.00 0.00 31.44 3.60
240 244 3.189702 CCGAATTTCCTTTGGCTCGTTTA 59.810 43.478 0.00 0.00 31.44 2.01
241 245 4.142469 CCGAATTTCCTTTGGCTCGTTTAT 60.142 41.667 0.00 0.00 31.44 1.40
242 246 5.065474 CCGAATTTCCTTTGGCTCGTTTATA 59.935 40.000 0.00 0.00 31.44 0.98
243 247 6.192360 CGAATTTCCTTTGGCTCGTTTATAG 58.808 40.000 0.00 0.00 0.00 1.31
264 268 1.686355 AGTTCCGCAACCACAATCAA 58.314 45.000 0.00 0.00 32.22 2.57
265 269 1.608590 AGTTCCGCAACCACAATCAAG 59.391 47.619 0.00 0.00 32.22 3.02
318 322 6.480320 GCAAAGAAACTGAAGACAGACTCTAA 59.520 38.462 0.00 0.00 46.03 2.10
325 329 5.480073 ACTGAAGACAGACTCTAAGCTCATT 59.520 40.000 0.00 0.00 46.03 2.57
326 330 5.718146 TGAAGACAGACTCTAAGCTCATTG 58.282 41.667 0.00 0.00 0.00 2.82
330 334 4.489810 ACAGACTCTAAGCTCATTGTTCG 58.510 43.478 0.00 0.00 0.00 3.95
335 339 3.254060 TCTAAGCTCATTGTTCGACTGC 58.746 45.455 0.00 0.00 0.00 4.40
339 343 2.005451 GCTCATTGTTCGACTGCAGAT 58.995 47.619 23.35 4.35 0.00 2.90
351 355 1.419762 ACTGCAGATTGTACACCACCA 59.580 47.619 23.35 0.00 0.00 4.17
352 356 2.040278 ACTGCAGATTGTACACCACCAT 59.960 45.455 23.35 0.00 0.00 3.55
359 363 5.647658 CAGATTGTACACCACCATATGTTGT 59.352 40.000 0.00 2.35 0.00 3.32
367 371 5.123186 ACACCACCATATGTTGTTTATCGTG 59.877 40.000 1.24 3.16 0.00 4.35
396 400 2.099263 GCATGCAGTGATGAGCAGATTT 59.901 45.455 14.21 0.00 44.94 2.17
398 402 4.554919 GCATGCAGTGATGAGCAGATTTAG 60.555 45.833 14.21 0.00 44.94 1.85
399 403 4.476628 TGCAGTGATGAGCAGATTTAGA 57.523 40.909 0.00 0.00 35.51 2.10
400 404 4.186926 TGCAGTGATGAGCAGATTTAGAC 58.813 43.478 0.00 0.00 35.51 2.59
402 406 4.874966 GCAGTGATGAGCAGATTTAGACTT 59.125 41.667 0.00 0.00 0.00 3.01
404 408 5.523188 CAGTGATGAGCAGATTTAGACTTCC 59.477 44.000 0.00 0.00 0.00 3.46
405 409 5.188555 AGTGATGAGCAGATTTAGACTTCCA 59.811 40.000 0.00 0.00 0.00 3.53
406 410 6.054295 GTGATGAGCAGATTTAGACTTCCAT 58.946 40.000 0.00 0.00 0.00 3.41
409 456 7.288621 TGATGAGCAGATTTAGACTTCCATCTA 59.711 37.037 0.00 0.00 0.00 1.98
424 473 5.635417 TCCATCTACTCTCGCTAATGATG 57.365 43.478 0.00 0.00 0.00 3.07
472 521 2.438951 TACTTGTGCGACCGGGGTTC 62.439 60.000 6.32 0.00 0.00 3.62
517 567 6.033091 GTGGACTCATTTTTATTTTTACCGCG 59.967 38.462 0.00 0.00 0.00 6.46
519 569 6.802834 GGACTCATTTTTATTTTTACCGCGAA 59.197 34.615 8.23 0.00 0.00 4.70
522 572 9.198837 ACTCATTTTTATTTTTACCGCGAAAAT 57.801 25.926 17.59 17.59 39.36 1.82
547 601 0.100682 TACTAGCAGCACTGTAGCGC 59.899 55.000 0.00 0.00 40.15 5.92
548 602 2.202610 TAGCAGCACTGTAGCGCG 60.203 61.111 0.00 0.00 40.15 6.86
564 618 3.653009 CGGTGGTGCAGTGCAGTG 61.653 66.667 20.42 17.56 40.08 3.66
619 673 2.297033 CTGCAAAAAGCTAAAGGCAGGA 59.703 45.455 17.72 0.00 43.62 3.86
620 674 2.297033 TGCAAAAAGCTAAAGGCAGGAG 59.703 45.455 0.00 0.00 45.94 3.69
621 675 2.353109 GCAAAAAGCTAAAGGCAGGAGG 60.353 50.000 0.00 0.00 44.79 4.30
644 699 2.113414 AGCCTCTAGAGCCCCTATTGAT 59.887 50.000 14.73 0.00 0.00 2.57
673 728 2.155197 ATTTCTCACCCAGTGCCCCC 62.155 60.000 0.00 0.00 32.98 5.40
719 775 4.223477 CCCATCCCTGTGAATGAAAATGTT 59.777 41.667 0.00 0.00 0.00 2.71
721 777 5.279607 CCATCCCTGTGAATGAAAATGTTGT 60.280 40.000 0.00 0.00 0.00 3.32
725 781 7.786030 TCCCTGTGAATGAAAATGTTGTAAAA 58.214 30.769 0.00 0.00 0.00 1.52
726 782 8.260818 TCCCTGTGAATGAAAATGTTGTAAAAA 58.739 29.630 0.00 0.00 0.00 1.94
755 812 2.102588 CTCCAGTAGAATAACGGGGGTG 59.897 54.545 0.00 0.00 35.64 4.61
756 813 1.140252 CCAGTAGAATAACGGGGGTGG 59.860 57.143 0.00 0.00 31.77 4.61
757 814 0.835276 AGTAGAATAACGGGGGTGGC 59.165 55.000 0.00 0.00 0.00 5.01
758 815 0.531311 GTAGAATAACGGGGGTGGCG 60.531 60.000 0.00 0.00 0.00 5.69
759 816 0.687098 TAGAATAACGGGGGTGGCGA 60.687 55.000 0.00 0.00 0.00 5.54
793 850 1.827344 CCAAAGGAAAGGGAATCCTGC 59.173 52.381 0.00 0.00 46.65 4.85
840 897 1.624865 CGAGCAGAGCACAAGCAGAC 61.625 60.000 1.96 0.00 45.49 3.51
843 900 1.624865 GCAGAGCACAAGCAGACTCG 61.625 60.000 0.00 0.00 45.49 4.18
897 954 0.807496 GTCAGCTTGCAATCTCCACC 59.193 55.000 0.00 0.00 0.00 4.61
1123 1192 1.002011 GCTCTTCCGCCCCTTTCTT 60.002 57.895 0.00 0.00 0.00 2.52
1127 1196 0.393132 CTTCCGCCCCTTTCTTCTCC 60.393 60.000 0.00 0.00 0.00 3.71
1151 1228 2.299297 CCTTTCTTGACCGGTAGACAGT 59.701 50.000 7.34 0.00 0.00 3.55
1152 1229 3.318017 CTTTCTTGACCGGTAGACAGTG 58.682 50.000 7.34 0.00 0.00 3.66
1166 1243 2.171448 AGACAGTGTTGTTGCTCTCCTT 59.829 45.455 0.00 0.00 37.76 3.36
1168 1245 4.127171 GACAGTGTTGTTGCTCTCCTTTA 58.873 43.478 0.00 0.00 37.76 1.85
1231 1308 1.522806 TGCGGTATTTAGCTGGCGG 60.523 57.895 0.00 0.00 0.00 6.13
1273 1350 1.137675 GAGAAAATCATGGGCCTTGGC 59.862 52.381 18.35 2.49 0.00 4.52
1297 1374 0.958382 TGCGTGCATTAGGAACCACC 60.958 55.000 0.00 0.00 39.35 4.61
1340 1418 0.038166 TTGGTGAGGAATGAGTGGGC 59.962 55.000 0.00 0.00 0.00 5.36
1347 1425 1.745489 GAATGAGTGGGCGGACACC 60.745 63.158 1.78 0.00 42.28 4.16
1383 1461 6.543735 AGCATTTCCCACTACTTTTTAGAGT 58.456 36.000 0.00 0.00 0.00 3.24
1470 1554 5.170748 GGGCCAACAAGATAGTTTCAAATG 58.829 41.667 4.39 0.00 0.00 2.32
1472 1556 5.229423 GCCAACAAGATAGTTTCAAATGCA 58.771 37.500 0.00 0.00 0.00 3.96
1495 1579 1.517257 GTGCGCGTGCTCTCATACT 60.517 57.895 23.16 0.00 43.34 2.12
1496 1580 1.226688 TGCGCGTGCTCTCATACTC 60.227 57.895 23.16 0.00 43.34 2.59
1497 1581 1.946650 GCGCGTGCTCTCATACTCC 60.947 63.158 15.02 0.00 38.39 3.85
1498 1582 1.433471 CGCGTGCTCTCATACTCCA 59.567 57.895 0.00 0.00 0.00 3.86
1499 1583 0.031314 CGCGTGCTCTCATACTCCAT 59.969 55.000 0.00 0.00 0.00 3.41
1500 1584 1.777101 GCGTGCTCTCATACTCCATC 58.223 55.000 0.00 0.00 0.00 3.51
1501 1585 1.067669 GCGTGCTCTCATACTCCATCA 59.932 52.381 0.00 0.00 0.00 3.07
1502 1586 2.288702 GCGTGCTCTCATACTCCATCAT 60.289 50.000 0.00 0.00 0.00 2.45
1503 1587 3.801638 GCGTGCTCTCATACTCCATCATT 60.802 47.826 0.00 0.00 0.00 2.57
1504 1588 3.739810 CGTGCTCTCATACTCCATCATTG 59.260 47.826 0.00 0.00 0.00 2.82
1505 1589 3.497640 GTGCTCTCATACTCCATCATTGC 59.502 47.826 0.00 0.00 0.00 3.56
1506 1590 3.135167 TGCTCTCATACTCCATCATTGCA 59.865 43.478 0.00 0.00 0.00 4.08
1516 1600 5.657474 ACTCCATCATTGCAAATCATTCAC 58.343 37.500 1.71 0.00 0.00 3.18
1518 1602 6.038997 TCCATCATTGCAAATCATTCACAA 57.961 33.333 1.71 0.00 0.00 3.33
1519 1603 5.870433 TCCATCATTGCAAATCATTCACAAC 59.130 36.000 1.71 0.00 0.00 3.32
1558 1642 7.309099 GTGAAACGCTAGTTGAAATTTCTTC 57.691 36.000 18.64 10.84 41.05 2.87
1566 1668 9.825972 CGCTAGTTGAAATTTCTTCTTTATCAA 57.174 29.630 18.64 0.00 0.00 2.57
1584 1686 3.206150 TCAACTCTGAAGAGCCAAACAC 58.794 45.455 7.25 0.00 45.79 3.32
1625 1732 2.802247 GCCAAAACTTTTCATCCACTGC 59.198 45.455 0.00 0.00 0.00 4.40
1662 1769 2.402305 GTCGCTTCTCATGGCAGATAG 58.598 52.381 0.00 0.00 0.00 2.08
1663 1770 2.034878 TCGCTTCTCATGGCAGATAGT 58.965 47.619 0.00 0.00 0.00 2.12
1664 1771 3.004839 GTCGCTTCTCATGGCAGATAGTA 59.995 47.826 0.00 0.00 0.00 1.82
1665 1772 3.254411 TCGCTTCTCATGGCAGATAGTAG 59.746 47.826 0.00 0.00 0.00 2.57
1679 1787 6.174049 GCAGATAGTAGGAGTTTTCCACTTT 58.826 40.000 0.00 0.00 46.64 2.66
1680 1788 6.092807 GCAGATAGTAGGAGTTTTCCACTTTG 59.907 42.308 0.00 0.96 46.64 2.77
1681 1789 6.092807 CAGATAGTAGGAGTTTTCCACTTTGC 59.907 42.308 0.00 0.00 46.64 3.68
1682 1790 4.439253 AGTAGGAGTTTTCCACTTTGCT 57.561 40.909 0.00 0.00 46.64 3.91
1683 1791 4.793201 AGTAGGAGTTTTCCACTTTGCTT 58.207 39.130 0.00 0.00 46.64 3.91
1684 1792 5.937111 AGTAGGAGTTTTCCACTTTGCTTA 58.063 37.500 0.00 0.00 46.64 3.09
1687 1795 6.731292 AGGAGTTTTCCACTTTGCTTAATT 57.269 33.333 0.00 0.00 46.64 1.40
1725 1833 3.627577 TCAGTTGAGTTTGCCTCTTGTTC 59.372 43.478 0.00 0.00 41.11 3.18
1741 1849 4.686091 TCTTGTTCAGTTTACTGCATCTCG 59.314 41.667 5.00 0.00 43.46 4.04
1792 1900 8.221251 TGGGACTAAATAACATGCCATATGTTA 58.779 33.333 13.06 13.06 45.16 2.41
1828 1938 7.917720 TTACTTATTCGGCAAGTTTTTGTTC 57.082 32.000 3.21 0.00 37.42 3.18
1880 1990 5.355596 CCAGGTGAGTCTCATATCTTTGTC 58.644 45.833 5.68 0.00 0.00 3.18
1885 2048 6.091441 GGTGAGTCTCATATCTTTGTCACAAC 59.909 42.308 5.68 0.00 35.77 3.32
1886 2049 6.091441 GTGAGTCTCATATCTTTGTCACAACC 59.909 42.308 5.68 0.00 34.51 3.77
1931 2094 4.952957 TGAAACTGAAACCACCATGAAGAA 59.047 37.500 0.00 0.00 0.00 2.52
1978 2141 7.728847 CATTATCCATGGAAAGATAACACGA 57.271 36.000 20.67 0.00 37.68 4.35
1982 2145 5.123227 TCCATGGAAAGATAACACGATTCC 58.877 41.667 13.46 0.00 39.96 3.01
1995 2158 3.118371 ACACGATTCCTCCATAAAGGACC 60.118 47.826 0.00 0.00 45.20 4.46
2068 2231 0.380378 GGCGTCACAGCAAGTCAAAA 59.620 50.000 0.00 0.00 39.27 2.44
2069 2232 1.597937 GGCGTCACAGCAAGTCAAAAG 60.598 52.381 0.00 0.00 39.27 2.27
2155 2326 2.161410 TGCGAAGTGTGTAATGAATGGC 59.839 45.455 0.00 0.00 0.00 4.40
2162 2333 3.555956 GTGTGTAATGAATGGCCTCGTAG 59.444 47.826 3.32 0.00 0.00 3.51
2184 2355 3.517500 GGGGTCAAATGGCCTATTCAAAA 59.482 43.478 3.32 0.00 40.38 2.44
2186 2357 4.383010 GGGTCAAATGGCCTATTCAAAAGG 60.383 45.833 3.32 0.00 40.38 3.11
2255 2426 5.045578 TCCGTAGTAGTAGTACCTTCACCTT 60.046 44.000 9.17 0.00 0.00 3.50
2280 2451 1.076332 ATTTACGCGTCTTGGTCTGC 58.924 50.000 18.63 0.00 0.00 4.26
2281 2452 0.032952 TTTACGCGTCTTGGTCTGCT 59.967 50.000 18.63 0.00 0.00 4.24
2282 2453 0.666274 TTACGCGTCTTGGTCTGCTG 60.666 55.000 18.63 0.00 0.00 4.41
2289 2465 1.214589 CTTGGTCTGCTGCATTGCC 59.785 57.895 1.31 6.56 0.00 4.52
2306 2482 2.125106 CCTGCCCTAGGTCGCAAC 60.125 66.667 12.99 0.00 42.00 4.17
2462 2639 0.861837 CTTGTGAGAACAGTGACGCC 59.138 55.000 0.00 0.00 0.00 5.68
2509 2700 0.685131 TGCCTCCCATGAATTGCCTG 60.685 55.000 0.00 0.00 0.00 4.85
2565 5367 6.281848 TCTGTTTTTAGCACTGTTAAGTCG 57.718 37.500 0.00 0.00 32.98 4.18
2576 5378 3.492011 ACTGTTAAGTCGTGGCGTAAAAG 59.508 43.478 0.00 0.00 26.77 2.27
2577 5379 2.801679 TGTTAAGTCGTGGCGTAAAAGG 59.198 45.455 0.00 0.00 0.00 3.11
2578 5380 3.059166 GTTAAGTCGTGGCGTAAAAGGA 58.941 45.455 0.00 0.00 0.00 3.36
2580 5382 0.669625 AGTCGTGGCGTAAAAGGAGC 60.670 55.000 0.00 0.00 0.00 4.70
2587 5389 2.613730 GCGTAAAAGGAGCCAGTTTC 57.386 50.000 0.00 0.00 0.00 2.78
2588 5390 1.199327 GCGTAAAAGGAGCCAGTTTCC 59.801 52.381 0.00 0.00 34.83 3.13
2589 5391 2.500229 CGTAAAAGGAGCCAGTTTCCA 58.500 47.619 0.00 0.00 37.18 3.53
2590 5392 2.225727 CGTAAAAGGAGCCAGTTTCCAC 59.774 50.000 0.00 0.00 37.18 4.02
2591 5393 2.452600 AAAAGGAGCCAGTTTCCACA 57.547 45.000 0.00 0.00 37.18 4.17
2592 5394 2.452600 AAAGGAGCCAGTTTCCACAA 57.547 45.000 0.00 0.00 37.18 3.33
2593 5395 2.452600 AAGGAGCCAGTTTCCACAAA 57.547 45.000 0.00 0.00 37.18 2.83
2594 5396 2.452600 AGGAGCCAGTTTCCACAAAA 57.547 45.000 0.00 0.00 37.18 2.44
2595 5397 2.310538 AGGAGCCAGTTTCCACAAAAG 58.689 47.619 0.00 0.00 37.18 2.27
2596 5398 2.091885 AGGAGCCAGTTTCCACAAAAGA 60.092 45.455 0.00 0.00 37.18 2.52
2597 5399 2.693074 GGAGCCAGTTTCCACAAAAGAA 59.307 45.455 0.00 0.00 34.74 2.52
2598 5400 3.132111 GGAGCCAGTTTCCACAAAAGAAA 59.868 43.478 0.00 0.00 34.74 2.52
2599 5401 4.202253 GGAGCCAGTTTCCACAAAAGAAAT 60.202 41.667 0.00 0.00 35.77 2.17
2600 5402 4.696455 AGCCAGTTTCCACAAAAGAAATG 58.304 39.130 0.00 0.00 35.77 2.32
2601 5403 3.809279 GCCAGTTTCCACAAAAGAAATGG 59.191 43.478 0.00 0.00 35.77 3.16
2602 5404 4.442753 GCCAGTTTCCACAAAAGAAATGGA 60.443 41.667 5.70 0.00 40.83 3.41
2603 5405 5.291971 CCAGTTTCCACAAAAGAAATGGAG 58.708 41.667 0.00 0.00 43.32 3.86
2604 5406 5.163416 CCAGTTTCCACAAAAGAAATGGAGT 60.163 40.000 0.00 0.00 43.32 3.85
2605 5407 5.750067 CAGTTTCCACAAAAGAAATGGAGTG 59.250 40.000 0.00 0.00 43.32 3.51
2606 5408 5.422012 AGTTTCCACAAAAGAAATGGAGTGT 59.578 36.000 0.00 0.00 43.32 3.55
2607 5409 5.514274 TTCCACAAAAGAAATGGAGTGTC 57.486 39.130 0.00 0.00 43.32 3.67
2608 5410 4.531854 TCCACAAAAGAAATGGAGTGTCA 58.468 39.130 0.00 0.00 37.60 3.58
2609 5411 4.952957 TCCACAAAAGAAATGGAGTGTCAA 59.047 37.500 0.00 0.00 37.60 3.18
2610 5412 5.420421 TCCACAAAAGAAATGGAGTGTCAAA 59.580 36.000 0.00 0.00 37.60 2.69
2611 5413 5.519927 CCACAAAAGAAATGGAGTGTCAAAC 59.480 40.000 0.00 0.00 35.33 2.93
2612 5414 6.098679 CACAAAAGAAATGGAGTGTCAAACA 58.901 36.000 0.00 0.00 0.00 2.83
2613 5415 6.254157 CACAAAAGAAATGGAGTGTCAAACAG 59.746 38.462 0.00 0.00 0.00 3.16
2614 5416 5.520376 AAAGAAATGGAGTGTCAAACAGG 57.480 39.130 0.00 0.00 0.00 4.00
2615 5417 4.437682 AGAAATGGAGTGTCAAACAGGA 57.562 40.909 0.00 0.00 0.00 3.86
2616 5418 4.137543 AGAAATGGAGTGTCAAACAGGAC 58.862 43.478 0.00 0.00 38.29 3.85
2617 5419 3.864789 AATGGAGTGTCAAACAGGACT 57.135 42.857 0.00 0.00 38.61 3.85
2618 5420 4.974645 AATGGAGTGTCAAACAGGACTA 57.025 40.909 0.00 0.00 38.61 2.59
2619 5421 5.505181 AATGGAGTGTCAAACAGGACTAT 57.495 39.130 0.00 0.00 38.61 2.12
2620 5422 4.537135 TGGAGTGTCAAACAGGACTATC 57.463 45.455 0.00 0.00 38.61 2.08
2621 5423 3.260884 TGGAGTGTCAAACAGGACTATCC 59.739 47.826 0.00 0.00 40.50 2.59
2622 5424 3.260884 GGAGTGTCAAACAGGACTATCCA 59.739 47.826 0.00 0.00 39.61 3.41
2623 5425 4.499183 GAGTGTCAAACAGGACTATCCAG 58.501 47.826 0.00 0.00 39.61 3.86
2659 5461 4.949856 GGAAAATATTCAGGCAAGAGGTCA 59.050 41.667 0.00 0.00 37.29 4.02
2660 5462 5.163612 GGAAAATATTCAGGCAAGAGGTCAC 60.164 44.000 0.00 0.00 37.29 3.67
2661 5463 4.851639 AATATTCAGGCAAGAGGTCACT 57.148 40.909 0.00 0.00 0.00 3.41
2662 5464 2.777832 ATTCAGGCAAGAGGTCACTC 57.222 50.000 0.00 0.00 44.31 3.51
2676 5478 4.684724 AGGTCACTCCCAAGTATCAACTA 58.315 43.478 0.00 0.00 33.49 2.24
2700 5502 5.693769 TGGAGGTACAGATTAAAGGAAGG 57.306 43.478 0.00 0.00 0.00 3.46
2733 5535 2.369860 TGAAGCACAGAGTGAAGACCAT 59.630 45.455 0.58 0.00 35.23 3.55
2767 5569 3.730061 GCTTCAGTGATTGGATTTCTGCG 60.730 47.826 0.00 0.00 0.00 5.18
2788 5590 1.132453 CATCTGTGATGTTGGCAGCTG 59.868 52.381 10.11 10.11 31.27 4.24
2806 5608 2.543430 GCTGCTAGCTTCTTCTGTATGC 59.457 50.000 17.23 0.00 38.45 3.14
2807 5609 3.740764 GCTGCTAGCTTCTTCTGTATGCT 60.741 47.826 17.23 0.00 38.45 3.79
2808 5610 3.790091 TGCTAGCTTCTTCTGTATGCTG 58.210 45.455 17.23 0.00 35.47 4.41
2810 5612 3.555139 GCTAGCTTCTTCTGTATGCTGTG 59.445 47.826 7.70 0.00 35.47 3.66
2811 5613 2.354259 AGCTTCTTCTGTATGCTGTGC 58.646 47.619 0.00 0.00 32.32 4.57
2812 5614 1.061711 GCTTCTTCTGTATGCTGTGCG 59.938 52.381 0.00 0.00 0.00 5.34
2814 5616 0.740868 TCTTCTGTATGCTGTGCGGC 60.741 55.000 0.00 0.00 0.00 6.53
2862 5711 5.446260 TTTTCTCCTCCCCCTTTGTATAC 57.554 43.478 0.00 0.00 0.00 1.47
2863 5712 3.788116 TCTCCTCCCCCTTTGTATACA 57.212 47.619 0.08 0.08 0.00 2.29
2871 5722 7.897565 TCCTCCCCCTTTGTATACATACTATAC 59.102 40.741 6.36 0.00 34.41 1.47
2902 5950 6.343716 TGAAAATCTTACCTACGGTGTACA 57.656 37.500 0.00 0.00 36.19 2.90
2909 5957 3.655276 ACCTACGGTGTACACTTCAAG 57.345 47.619 24.55 15.90 32.98 3.02
2999 6047 7.391148 TTGGGTTTTTACTTATCAGATCTGC 57.609 36.000 18.36 0.00 0.00 4.26
3015 6063 8.034313 TCAGATCTGCCCAATTTATTAGTAGT 57.966 34.615 18.36 0.00 0.00 2.73
3017 6065 9.429359 CAGATCTGCCCAATTTATTAGTAGTAG 57.571 37.037 10.38 0.00 0.00 2.57
3018 6066 8.598041 AGATCTGCCCAATTTATTAGTAGTAGG 58.402 37.037 0.00 0.00 0.00 3.18
3019 6067 7.924358 TCTGCCCAATTTATTAGTAGTAGGA 57.076 36.000 0.00 0.00 0.00 2.94
3020 6068 7.732996 TCTGCCCAATTTATTAGTAGTAGGAC 58.267 38.462 0.00 0.00 0.00 3.85
3021 6069 7.567622 TCTGCCCAATTTATTAGTAGTAGGACT 59.432 37.037 0.00 0.00 0.00 3.85
3022 6070 7.506114 TGCCCAATTTATTAGTAGTAGGACTG 58.494 38.462 0.00 0.00 0.00 3.51
3044 6094 6.316390 ACTGTGCATTCTTTTAGTACCTATGC 59.684 38.462 0.00 0.00 37.87 3.14
3073 6123 4.579869 GGTCCAGCCCATAATGTACTATG 58.420 47.826 0.00 0.00 0.00 2.23
3091 6146 3.683365 ATGTATATGCGCCAGTGATCA 57.317 42.857 4.18 0.00 0.00 2.92
3237 6375 3.628942 AGTTGTCACGCGGAGTACATATA 59.371 43.478 12.47 0.00 0.00 0.86
3238 6376 4.277672 AGTTGTCACGCGGAGTACATATAT 59.722 41.667 12.47 0.00 0.00 0.86
3241 6379 4.164294 GTCACGCGGAGTACATATATTCC 58.836 47.826 12.47 0.00 34.54 3.01
3286 6424 3.264193 TGTCTTACGTACTACTCCCTCCA 59.736 47.826 0.00 0.00 0.00 3.86
3303 6441 8.606830 ACTCCCTCCATATCAAAATATAAGACC 58.393 37.037 0.00 0.00 0.00 3.85
3369 6507 9.925545 TTTCATACATAGGGAGTACTAGTTACA 57.074 33.333 0.00 0.00 32.41 2.41
3416 6559 6.709397 CACTTACATGAGCATATGATCCTTGT 59.291 38.462 22.38 22.38 32.90 3.16
3589 6732 5.450965 GCATGATCCTTATTGTTCCACAAGG 60.451 44.000 0.00 0.00 41.94 3.61
3590 6733 5.255397 TGATCCTTATTGTTCCACAAGGT 57.745 39.130 0.00 0.00 41.94 3.50
3591 6734 6.381498 TGATCCTTATTGTTCCACAAGGTA 57.619 37.500 0.00 0.00 41.94 3.08
3592 6735 6.177610 TGATCCTTATTGTTCCACAAGGTAC 58.822 40.000 0.00 0.00 41.94 3.34
3610 6758 0.608130 ACGTATCCACTTGAGCTGCA 59.392 50.000 1.02 0.00 0.00 4.41
3625 6773 2.098934 AGCTGCAGTCTCTGAACGATAG 59.901 50.000 16.64 0.00 36.19 2.08
3647 6795 3.678548 GTCAGTTAACACCCGAGTTCATC 59.321 47.826 8.61 0.00 33.07 2.92
3661 6809 1.665679 GTTCATCTGGTATGTGGTGCG 59.334 52.381 0.00 0.00 0.00 5.34
3697 6845 1.405933 GGGTTTGATTTGATGGCAGGC 60.406 52.381 0.00 0.00 0.00 4.85
3784 6932 1.518929 GAGTACGCGATCACATTCAGC 59.481 52.381 15.93 0.00 0.00 4.26
3937 7085 0.964358 AGCAGGCCAGCATTGAGTTC 60.964 55.000 23.38 0.00 36.85 3.01
4033 7181 1.472480 CCCGACAAAGCAAAGGGTATG 59.528 52.381 0.00 0.00 37.36 2.39
4034 7182 2.432444 CCGACAAAGCAAAGGGTATGA 58.568 47.619 0.00 0.00 0.00 2.15
4035 7183 3.016736 CCGACAAAGCAAAGGGTATGAT 58.983 45.455 0.00 0.00 0.00 2.45
4036 7184 4.196193 CCGACAAAGCAAAGGGTATGATA 58.804 43.478 0.00 0.00 0.00 2.15
4037 7185 4.821805 CCGACAAAGCAAAGGGTATGATAT 59.178 41.667 0.00 0.00 0.00 1.63
4038 7186 5.995282 CCGACAAAGCAAAGGGTATGATATA 59.005 40.000 0.00 0.00 0.00 0.86
4039 7187 6.655003 CCGACAAAGCAAAGGGTATGATATAT 59.345 38.462 0.00 0.00 0.00 0.86
4040 7188 7.822334 CCGACAAAGCAAAGGGTATGATATATA 59.178 37.037 0.00 0.00 0.00 0.86
4041 7189 9.214957 CGACAAAGCAAAGGGTATGATATATAA 57.785 33.333 0.00 0.00 0.00 0.98
4043 7191 9.297037 ACAAAGCAAAGGGTATGATATATAACC 57.703 33.333 0.00 0.00 0.00 2.85
4044 7192 9.295825 CAAAGCAAAGGGTATGATATATAACCA 57.704 33.333 11.52 0.00 33.82 3.67
4048 7196 9.057089 GCAAAGGGTATGATATATAACCATAGC 57.943 37.037 19.17 19.17 39.31 2.97
4051 7199 8.263854 AGGGTATGATATATAACCATAGCACC 57.736 38.462 23.89 16.75 40.83 5.01
4065 7233 5.111293 CCATAGCACCACAATGAAATTTCC 58.889 41.667 15.48 0.00 31.22 3.13
4069 7237 4.279671 AGCACCACAATGAAATTTCCGTAA 59.720 37.500 15.48 0.00 31.22 3.18
4071 7239 5.768317 CACCACAATGAAATTTCCGTAACT 58.232 37.500 15.48 0.00 31.22 2.24
4166 7335 0.964358 AGCTCATTGTCCCTGCTTGC 60.964 55.000 0.00 0.00 0.00 4.01
4170 7339 3.018856 CTCATTGTCCCTGCTTGCATTA 58.981 45.455 0.00 0.00 0.00 1.90
4213 7382 3.630769 CAGAGAACATGGTGATCAATGGG 59.369 47.826 11.22 0.00 0.00 4.00
4241 7410 1.044790 GGAGGGGCCATGGATGTTTG 61.045 60.000 18.40 0.00 36.34 2.93
4363 7532 0.825010 ACTCCGACCAGTACACCGTT 60.825 55.000 0.00 0.00 0.00 4.44
4474 7643 3.858868 GACGTTCACGCTGGGCTCA 62.859 63.158 0.00 0.00 44.43 4.26
4588 7757 1.671054 CCAGGCCGTGAACGTGAAT 60.671 57.895 0.00 0.00 37.74 2.57
4711 7880 3.423154 CGCGTCTGGGGCTTGAAC 61.423 66.667 0.00 0.00 0.00 3.18
4738 7907 1.372087 CTGGGTTGAAGGCGAGCATC 61.372 60.000 0.00 0.00 0.00 3.91
4739 7908 1.377202 GGGTTGAAGGCGAGCATCA 60.377 57.895 0.00 0.00 33.17 3.07
4742 7911 0.391661 GTTGAAGGCGAGCATCAGGA 60.392 55.000 0.00 0.00 33.17 3.86
4774 7943 3.525537 CATGGCTAGTGTCATCGTTCTT 58.474 45.455 0.00 0.00 36.19 2.52
4804 7973 9.388346 CTGTTCTGATCTTCTGAATATACGTAC 57.612 37.037 0.00 0.00 36.85 3.67
4805 7974 8.068380 TGTTCTGATCTTCTGAATATACGTACG 58.932 37.037 15.01 15.01 36.85 3.67
4806 7975 7.725818 TCTGATCTTCTGAATATACGTACGT 57.274 36.000 25.98 25.98 0.00 3.57
4807 7976 8.822652 TCTGATCTTCTGAATATACGTACGTA 57.177 34.615 28.62 28.62 34.87 3.57
4850 8019 3.306502 CGAGGAGGCCACTAGTTTTGTTA 60.307 47.826 5.01 0.00 0.00 2.41
4851 8020 4.254492 GAGGAGGCCACTAGTTTTGTTAG 58.746 47.826 5.01 0.00 0.00 2.34
4852 8021 2.747989 GGAGGCCACTAGTTTTGTTAGC 59.252 50.000 5.01 0.00 0.00 3.09
4949 8121 3.993081 TGTTTTGTTGCTTTCTTGTGTGG 59.007 39.130 0.00 0.00 0.00 4.17
4988 8160 0.392863 TGATGGGATTGCGTGGTCAG 60.393 55.000 0.00 0.00 0.00 3.51
5027 8199 8.394971 TGTGATGTGAGATGTAAGAATTGTTT 57.605 30.769 0.00 0.00 0.00 2.83
5049 8221 5.874895 TCAAGTTCATCTCTTCAATGCAG 57.125 39.130 0.00 0.00 0.00 4.41
5062 8234 6.291377 TCTTCAATGCAGTAGAAAGTTCAGT 58.709 36.000 0.00 0.00 0.00 3.41
5076 8248 7.731054 AGAAAGTTCAGTAATCTTGTCTCTGT 58.269 34.615 0.00 0.00 0.00 3.41
5077 8249 8.207545 AGAAAGTTCAGTAATCTTGTCTCTGTT 58.792 33.333 0.00 0.00 0.00 3.16
5078 8250 9.477484 GAAAGTTCAGTAATCTTGTCTCTGTTA 57.523 33.333 0.00 0.00 0.00 2.41
5079 8251 9.482627 AAAGTTCAGTAATCTTGTCTCTGTTAG 57.517 33.333 0.00 0.00 0.00 2.34
5080 8252 8.410673 AGTTCAGTAATCTTGTCTCTGTTAGA 57.589 34.615 0.00 0.00 0.00 2.10
5081 8253 8.861086 AGTTCAGTAATCTTGTCTCTGTTAGAA 58.139 33.333 0.00 0.00 35.47 2.10
5082 8254 9.646427 GTTCAGTAATCTTGTCTCTGTTAGAAT 57.354 33.333 0.00 0.00 35.47 2.40
5089 8261 8.864069 ATCTTGTCTCTGTTAGAATTATGTCG 57.136 34.615 0.00 0.00 35.47 4.35
5090 8262 8.051901 TCTTGTCTCTGTTAGAATTATGTCGA 57.948 34.615 0.00 0.00 35.47 4.20
5091 8263 8.520351 TCTTGTCTCTGTTAGAATTATGTCGAA 58.480 33.333 0.00 0.00 35.47 3.71
5092 8264 9.307121 CTTGTCTCTGTTAGAATTATGTCGAAT 57.693 33.333 0.00 0.00 35.47 3.34
5381 8554 1.330521 GTGTCGTGCTTGTGTGATTGT 59.669 47.619 0.00 0.00 0.00 2.71
5465 8638 2.024414 GTTGCAAGGTCTGAAGGTTGT 58.976 47.619 0.00 0.00 0.00 3.32
5515 8688 4.077184 CGGCGGCTGTGGAGGTAA 62.077 66.667 7.61 0.00 0.00 2.85
5591 8764 3.418995 AGAAGCAGTTCACGGTAGAGTA 58.581 45.455 0.00 0.00 34.82 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.071605 CTGAACACTAGTGGCGCTTC 58.928 55.000 26.12 19.39 34.19 3.86
1 2 0.679505 TCTGAACACTAGTGGCGCTT 59.320 50.000 26.12 11.69 34.19 4.68
2 3 0.679505 TTCTGAACACTAGTGGCGCT 59.320 50.000 26.12 5.62 34.19 5.92
3 4 1.071605 CTTCTGAACACTAGTGGCGC 58.928 55.000 26.12 14.87 34.19 6.53
4 5 2.061773 CACTTCTGAACACTAGTGGCG 58.938 52.381 26.12 11.38 35.51 5.69
7 8 2.224281 TGGCCACTTCTGAACACTAGTG 60.224 50.000 21.44 21.44 38.14 2.74
8 9 2.037772 CTGGCCACTTCTGAACACTAGT 59.962 50.000 0.00 0.00 0.00 2.57
9 10 2.693069 CTGGCCACTTCTGAACACTAG 58.307 52.381 0.00 0.00 0.00 2.57
10 11 1.270839 GCTGGCCACTTCTGAACACTA 60.271 52.381 0.00 0.00 0.00 2.74
11 12 0.536006 GCTGGCCACTTCTGAACACT 60.536 55.000 0.00 0.00 0.00 3.55
12 13 0.819259 TGCTGGCCACTTCTGAACAC 60.819 55.000 0.00 0.00 0.00 3.32
13 14 0.819259 GTGCTGGCCACTTCTGAACA 60.819 55.000 0.00 0.00 41.35 3.18
14 15 1.518903 GGTGCTGGCCACTTCTGAAC 61.519 60.000 0.00 0.00 44.08 3.18
15 16 1.228245 GGTGCTGGCCACTTCTGAA 60.228 57.895 0.00 0.00 44.08 3.02
16 17 2.431683 GGTGCTGGCCACTTCTGA 59.568 61.111 0.00 0.00 44.08 3.27
17 18 3.052082 CGGTGCTGGCCACTTCTG 61.052 66.667 0.00 0.00 44.08 3.02
18 19 3.560251 ACGGTGCTGGCCACTTCT 61.560 61.111 0.00 0.00 44.08 2.85
19 20 3.357079 CACGGTGCTGGCCACTTC 61.357 66.667 0.00 0.00 44.08 3.01
20 21 3.872603 TCACGGTGCTGGCCACTT 61.873 61.111 0.00 0.00 44.08 3.16
21 22 4.626081 GTCACGGTGCTGGCCACT 62.626 66.667 0.00 0.00 44.08 4.00
22 23 2.725203 TAAGTCACGGTGCTGGCCAC 62.725 60.000 0.00 0.00 43.90 5.01
23 24 1.836999 ATAAGTCACGGTGCTGGCCA 61.837 55.000 4.71 4.71 0.00 5.36
24 25 0.676782 AATAAGTCACGGTGCTGGCC 60.677 55.000 2.51 0.00 0.00 5.36
25 26 2.018542 TAATAAGTCACGGTGCTGGC 57.981 50.000 2.51 0.00 0.00 4.85
26 27 5.113383 TGTTATAATAAGTCACGGTGCTGG 58.887 41.667 2.51 0.00 0.00 4.85
27 28 6.656314 TTGTTATAATAAGTCACGGTGCTG 57.344 37.500 2.51 0.00 0.00 4.41
28 29 8.951787 TTATTGTTATAATAAGTCACGGTGCT 57.048 30.769 2.51 1.17 0.00 4.40
52 53 9.367444 CGACGGCCTTCTATAATCTAAATTATT 57.633 33.333 7.75 0.00 38.66 1.40
53 54 7.980099 CCGACGGCCTTCTATAATCTAAATTAT 59.020 37.037 7.75 0.00 40.42 1.28
54 55 7.039504 ACCGACGGCCTTCTATAATCTAAATTA 60.040 37.037 15.39 0.00 0.00 1.40
55 56 6.164176 CCGACGGCCTTCTATAATCTAAATT 58.836 40.000 7.75 0.00 0.00 1.82
56 57 5.245526 ACCGACGGCCTTCTATAATCTAAAT 59.754 40.000 15.39 0.00 0.00 1.40
57 58 4.586001 ACCGACGGCCTTCTATAATCTAAA 59.414 41.667 15.39 0.00 0.00 1.85
58 59 4.147321 ACCGACGGCCTTCTATAATCTAA 58.853 43.478 15.39 0.00 0.00 2.10
59 60 3.755378 GACCGACGGCCTTCTATAATCTA 59.245 47.826 15.39 0.00 0.00 1.98
60 61 2.557490 GACCGACGGCCTTCTATAATCT 59.443 50.000 15.39 0.00 0.00 2.40
61 62 2.557490 AGACCGACGGCCTTCTATAATC 59.443 50.000 15.39 0.00 0.00 1.75
62 63 2.557490 GAGACCGACGGCCTTCTATAAT 59.443 50.000 15.39 0.00 0.00 1.28
63 64 1.952296 GAGACCGACGGCCTTCTATAA 59.048 52.381 15.39 0.00 0.00 0.98
64 65 1.602311 GAGACCGACGGCCTTCTATA 58.398 55.000 15.39 0.00 0.00 1.31
78 79 0.529992 CAAGAATACCGGGCGAGACC 60.530 60.000 6.32 0.00 37.93 3.85
84 85 0.400594 ATAGGGCAAGAATACCGGGC 59.599 55.000 6.32 0.00 0.00 6.13
102 103 3.008813 AGAGAGACATGTTTGAGTGCCAT 59.991 43.478 0.00 0.00 0.00 4.40
103 104 2.369860 AGAGAGACATGTTTGAGTGCCA 59.630 45.455 0.00 0.00 0.00 4.92
104 105 3.051081 AGAGAGACATGTTTGAGTGCC 57.949 47.619 0.00 0.00 0.00 5.01
122 123 1.833630 ACCATCAGCATCTCCGAAAGA 59.166 47.619 0.00 0.00 38.72 2.52
147 148 2.026590 GTTGCACGCAAAGCAGCT 59.973 55.556 5.94 0.00 43.75 4.24
154 155 1.894756 GGTAGGTGGTTGCACGCAA 60.895 57.895 0.00 0.00 0.00 4.85
157 158 2.073816 CTTTAGGTAGGTGGTTGCACG 58.926 52.381 0.00 0.00 0.00 5.34
158 159 1.810755 GCTTTAGGTAGGTGGTTGCAC 59.189 52.381 0.00 0.00 0.00 4.57
183 184 7.305705 CGATAATGCAGTAGAATAGATAAGCGC 60.306 40.741 0.00 0.00 0.00 5.92
184 185 7.910683 TCGATAATGCAGTAGAATAGATAAGCG 59.089 37.037 0.00 0.00 0.00 4.68
190 191 6.017357 ACACGTCGATAATGCAGTAGAATAGA 60.017 38.462 0.00 0.00 0.00 1.98
191 192 6.143496 ACACGTCGATAATGCAGTAGAATAG 58.857 40.000 0.00 0.00 0.00 1.73
192 193 6.068473 ACACGTCGATAATGCAGTAGAATA 57.932 37.500 0.00 0.00 0.00 1.75
193 194 4.933330 ACACGTCGATAATGCAGTAGAAT 58.067 39.130 0.00 0.00 0.00 2.40
194 195 4.142556 TGACACGTCGATAATGCAGTAGAA 60.143 41.667 0.00 0.00 0.00 2.10
196 197 3.482472 GTGACACGTCGATAATGCAGTAG 59.518 47.826 0.00 0.00 0.00 2.57
202 206 2.182904 TCGGTGACACGTCGATAATG 57.817 50.000 0.00 0.00 34.94 1.90
211 215 2.350388 CCAAAGGAAATTCGGTGACACG 60.350 50.000 0.00 0.00 0.00 4.49
219 223 2.989422 AACGAGCCAAAGGAAATTCG 57.011 45.000 0.00 0.00 0.00 3.34
231 235 3.048501 GCGGAACTACTATAAACGAGCC 58.951 50.000 0.00 0.00 0.00 4.70
239 243 4.804868 TTGTGGTTGCGGAACTACTATA 57.195 40.909 30.26 16.65 42.52 1.31
240 244 3.688694 TTGTGGTTGCGGAACTACTAT 57.311 42.857 30.26 0.00 42.52 2.12
241 245 3.007074 TGATTGTGGTTGCGGAACTACTA 59.993 43.478 30.26 25.21 42.52 1.82
242 246 2.224426 TGATTGTGGTTGCGGAACTACT 60.224 45.455 30.26 16.02 42.52 2.57
243 247 2.147958 TGATTGTGGTTGCGGAACTAC 58.852 47.619 25.66 25.66 42.41 2.73
281 285 5.833131 TCAGTTTCTTTGCCTTTTACCATCT 59.167 36.000 0.00 0.00 0.00 2.90
282 286 6.084326 TCAGTTTCTTTGCCTTTTACCATC 57.916 37.500 0.00 0.00 0.00 3.51
283 287 6.323739 TCTTCAGTTTCTTTGCCTTTTACCAT 59.676 34.615 0.00 0.00 0.00 3.55
284 288 5.654650 TCTTCAGTTTCTTTGCCTTTTACCA 59.345 36.000 0.00 0.00 0.00 3.25
286 290 6.560711 TGTCTTCAGTTTCTTTGCCTTTTAC 58.439 36.000 0.00 0.00 0.00 2.01
288 292 5.418840 TCTGTCTTCAGTTTCTTTGCCTTTT 59.581 36.000 0.00 0.00 41.91 2.27
292 296 3.879892 AGTCTGTCTTCAGTTTCTTTGCC 59.120 43.478 0.00 0.00 41.91 4.52
318 322 1.001293 TCTGCAGTCGAACAATGAGCT 59.999 47.619 14.67 0.00 0.00 4.09
325 329 3.057019 GTGTACAATCTGCAGTCGAACA 58.943 45.455 14.67 10.15 0.00 3.18
326 330 2.412089 GGTGTACAATCTGCAGTCGAAC 59.588 50.000 14.67 7.69 0.00 3.95
330 334 2.076863 GGTGGTGTACAATCTGCAGTC 58.923 52.381 14.67 0.00 0.00 3.51
335 339 6.122850 CAACATATGGTGGTGTACAATCTG 57.877 41.667 13.27 0.00 40.77 2.90
351 355 5.518847 CGGAGTCACACGATAAACAACATAT 59.481 40.000 0.00 0.00 0.00 1.78
352 356 4.860352 CGGAGTCACACGATAAACAACATA 59.140 41.667 0.00 0.00 0.00 2.29
359 363 2.267426 CATGCGGAGTCACACGATAAA 58.733 47.619 0.00 0.00 0.00 1.40
367 371 0.742281 ATCACTGCATGCGGAGTCAC 60.742 55.000 32.80 0.00 42.75 3.67
396 400 4.425180 AGCGAGAGTAGATGGAAGTCTA 57.575 45.455 0.00 0.00 0.00 2.59
398 402 5.239744 TCATTAGCGAGAGTAGATGGAAGTC 59.760 44.000 0.00 0.00 0.00 3.01
399 403 5.133941 TCATTAGCGAGAGTAGATGGAAGT 58.866 41.667 0.00 0.00 0.00 3.01
400 404 5.697473 TCATTAGCGAGAGTAGATGGAAG 57.303 43.478 0.00 0.00 0.00 3.46
402 406 5.635417 CATCATTAGCGAGAGTAGATGGA 57.365 43.478 0.00 0.00 0.00 3.41
404 408 5.384063 ACCATCATTAGCGAGAGTAGATG 57.616 43.478 0.00 0.00 33.15 2.90
405 409 6.242396 AGTACCATCATTAGCGAGAGTAGAT 58.758 40.000 0.00 0.00 0.00 1.98
406 410 5.622180 AGTACCATCATTAGCGAGAGTAGA 58.378 41.667 0.00 0.00 0.00 2.59
409 456 3.251245 CGAGTACCATCATTAGCGAGAGT 59.749 47.826 0.00 0.00 0.00 3.24
424 473 2.416972 GGTGAGGTCATGTTCGAGTACC 60.417 54.545 0.00 0.00 0.00 3.34
472 521 3.151958 AATGATCGGCTCGACCCCG 62.152 63.158 12.35 12.35 46.88 5.73
517 567 6.369065 ACAGTGCTGCTAGTACAACTATTTTC 59.631 38.462 0.00 0.00 32.98 2.29
519 569 5.794894 ACAGTGCTGCTAGTACAACTATTT 58.205 37.500 0.00 0.00 32.98 1.40
522 572 4.142447 GCTACAGTGCTGCTAGTACAACTA 60.142 45.833 0.00 0.00 32.98 2.24
525 575 2.415491 CGCTACAGTGCTGCTAGTACAA 60.415 50.000 0.00 0.00 32.98 2.41
547 601 3.653009 CACTGCACTGCACCACCG 61.653 66.667 0.00 0.00 33.79 4.94
548 602 3.289834 CCACTGCACTGCACCACC 61.290 66.667 0.00 0.00 33.79 4.61
550 604 0.969917 AAAACCACTGCACTGCACCA 60.970 50.000 0.00 0.00 33.79 4.17
551 605 0.528249 CAAAACCACTGCACTGCACC 60.528 55.000 0.00 0.00 33.79 5.01
552 606 0.528249 CCAAAACCACTGCACTGCAC 60.528 55.000 0.00 0.00 33.79 4.57
553 607 1.674764 CCCAAAACCACTGCACTGCA 61.675 55.000 3.11 3.11 36.92 4.41
554 608 1.067916 CCCAAAACCACTGCACTGC 59.932 57.895 0.00 0.00 0.00 4.40
555 609 0.102844 CACCCAAAACCACTGCACTG 59.897 55.000 0.00 0.00 0.00 3.66
556 610 1.675720 GCACCCAAAACCACTGCACT 61.676 55.000 0.00 0.00 0.00 4.40
564 618 0.741915 TTTGTCGAGCACCCAAAACC 59.258 50.000 0.00 0.00 0.00 3.27
634 688 6.268387 AGAAATGTGGCAATAATCAATAGGGG 59.732 38.462 0.00 0.00 0.00 4.79
644 699 3.763360 CTGGGTGAGAAATGTGGCAATAA 59.237 43.478 0.00 0.00 0.00 1.40
673 728 2.113139 GTGGTGGTGGGGACAGTG 59.887 66.667 0.00 0.00 44.46 3.66
725 781 8.419442 CCCGTTATTCTACTGGAGTAGTATTTT 58.581 37.037 12.51 0.00 46.08 1.82
726 782 7.015001 CCCCGTTATTCTACTGGAGTAGTATTT 59.985 40.741 12.51 1.52 46.08 1.40
727 783 6.492772 CCCCGTTATTCTACTGGAGTAGTATT 59.507 42.308 12.51 3.49 46.08 1.89
728 784 6.008960 CCCCGTTATTCTACTGGAGTAGTAT 58.991 44.000 12.51 11.13 46.08 2.12
729 785 5.380043 CCCCGTTATTCTACTGGAGTAGTA 58.620 45.833 12.51 4.92 46.08 1.82
730 786 4.213513 CCCCGTTATTCTACTGGAGTAGT 58.786 47.826 12.51 0.00 46.08 2.73
732 788 3.052642 ACCCCCGTTATTCTACTGGAGTA 60.053 47.826 0.00 0.00 0.00 2.59
733 789 2.292719 ACCCCCGTTATTCTACTGGAGT 60.293 50.000 0.00 0.00 0.00 3.85
734 790 2.102588 CACCCCCGTTATTCTACTGGAG 59.897 54.545 0.00 0.00 0.00 3.86
735 791 2.112998 CACCCCCGTTATTCTACTGGA 58.887 52.381 0.00 0.00 0.00 3.86
736 792 1.140252 CCACCCCCGTTATTCTACTGG 59.860 57.143 0.00 0.00 0.00 4.00
737 793 1.474498 GCCACCCCCGTTATTCTACTG 60.474 57.143 0.00 0.00 0.00 2.74
738 794 0.835276 GCCACCCCCGTTATTCTACT 59.165 55.000 0.00 0.00 0.00 2.57
739 795 0.531311 CGCCACCCCCGTTATTCTAC 60.531 60.000 0.00 0.00 0.00 2.59
791 848 2.099405 GCCCTGCTTTTTATGGTAGCA 58.901 47.619 0.00 0.00 42.22 3.49
793 850 2.097466 CACGCCCTGCTTTTTATGGTAG 59.903 50.000 0.00 0.00 0.00 3.18
858 915 2.465055 GAAGAAGGGGACACCGGTGG 62.465 65.000 36.47 19.58 46.96 4.61
867 924 0.321671 CAAGCTGACGAAGAAGGGGA 59.678 55.000 0.00 0.00 0.00 4.81
897 954 2.294078 GGGAGTGGGAGTGAGGTGG 61.294 68.421 0.00 0.00 0.00 4.61
930 987 2.539953 CGTCCTCGATGTGTAGAAGAGC 60.540 54.545 0.00 0.00 39.71 4.09
1016 1085 2.046023 CCAGACCCAGCAATGCGA 60.046 61.111 0.00 0.00 0.00 5.10
1017 1086 3.136123 CCCAGACCCAGCAATGCG 61.136 66.667 0.00 0.00 0.00 4.73
1018 1087 2.757099 CCCCAGACCCAGCAATGC 60.757 66.667 0.00 0.00 0.00 3.56
1127 1196 0.252197 CTACCGGTCAAGAAAGGGGG 59.748 60.000 12.40 0.00 0.00 5.40
1132 1201 2.696707 ACACTGTCTACCGGTCAAGAAA 59.303 45.455 12.40 3.16 0.00 2.52
1135 1204 2.223971 ACAACACTGTCTACCGGTCAAG 60.224 50.000 12.40 3.52 0.00 3.02
1136 1205 1.758280 ACAACACTGTCTACCGGTCAA 59.242 47.619 12.40 0.00 0.00 3.18
1138 1207 2.132762 CAACAACACTGTCTACCGGTC 58.867 52.381 12.40 0.00 33.45 4.79
1139 1208 1.808891 GCAACAACACTGTCTACCGGT 60.809 52.381 13.98 13.98 33.45 5.28
1140 1209 0.865769 GCAACAACACTGTCTACCGG 59.134 55.000 0.00 0.00 33.45 5.28
1142 1211 3.060602 GAGAGCAACAACACTGTCTACC 58.939 50.000 0.00 0.00 33.45 3.18
1143 1212 3.060602 GGAGAGCAACAACACTGTCTAC 58.939 50.000 0.00 0.00 33.45 2.59
1151 1228 3.994392 GACGATAAAGGAGAGCAACAACA 59.006 43.478 0.00 0.00 0.00 3.33
1152 1229 4.092091 CAGACGATAAAGGAGAGCAACAAC 59.908 45.833 0.00 0.00 0.00 3.32
1166 1243 2.741759 TGAGCAGTTGCAGACGATAA 57.258 45.000 6.90 0.00 45.16 1.75
1168 1245 2.105006 AATGAGCAGTTGCAGACGAT 57.895 45.000 6.90 0.00 45.16 3.73
1231 1308 8.846943 TCTCTACTACTGATGAGATCTGATTC 57.153 38.462 0.00 0.00 31.53 2.52
1315 1393 1.879380 CTCATTCCTCACCAACGCAAA 59.121 47.619 0.00 0.00 0.00 3.68
1321 1399 0.038166 GCCCACTCATTCCTCACCAA 59.962 55.000 0.00 0.00 0.00 3.67
1340 1418 3.252215 TGCTTCATTTAACTTGGTGTCCG 59.748 43.478 0.00 0.00 0.00 4.79
1347 1425 6.458210 AGTGGGAAATGCTTCATTTAACTTG 58.542 36.000 4.93 0.00 43.05 3.16
1449 1527 5.229423 TGCATTTGAAACTATCTTGTTGGC 58.771 37.500 0.00 0.00 0.00 4.52
1490 1574 7.381408 GTGAATGATTTGCAATGATGGAGTATG 59.619 37.037 0.00 0.00 0.00 2.39
1495 1579 5.662674 TGTGAATGATTTGCAATGATGGA 57.337 34.783 0.00 0.00 0.00 3.41
1496 1580 5.872617 AGTTGTGAATGATTTGCAATGATGG 59.127 36.000 0.00 0.00 0.00 3.51
1497 1581 6.588373 TGAGTTGTGAATGATTTGCAATGATG 59.412 34.615 0.00 0.00 0.00 3.07
1498 1582 6.693466 TGAGTTGTGAATGATTTGCAATGAT 58.307 32.000 0.00 0.00 0.00 2.45
1499 1583 6.016108 TCTGAGTTGTGAATGATTTGCAATGA 60.016 34.615 0.00 0.00 0.00 2.57
1500 1584 6.153756 TCTGAGTTGTGAATGATTTGCAATG 58.846 36.000 0.00 0.00 0.00 2.82
1501 1585 6.208007 TCTCTGAGTTGTGAATGATTTGCAAT 59.792 34.615 0.00 0.00 0.00 3.56
1502 1586 5.532032 TCTCTGAGTTGTGAATGATTTGCAA 59.468 36.000 4.32 0.00 0.00 4.08
1503 1587 5.065235 TCTCTGAGTTGTGAATGATTTGCA 58.935 37.500 4.32 0.00 0.00 4.08
1504 1588 5.618056 TCTCTGAGTTGTGAATGATTTGC 57.382 39.130 4.32 0.00 0.00 3.68
1505 1589 7.430992 TCTTCTCTGAGTTGTGAATGATTTG 57.569 36.000 4.32 0.00 0.00 2.32
1506 1590 8.455903 TTTCTTCTCTGAGTTGTGAATGATTT 57.544 30.769 4.32 0.00 0.00 2.17
1516 1600 5.718649 TTCACGTTTTCTTCTCTGAGTTG 57.281 39.130 4.32 0.00 0.00 3.16
1518 1602 4.267928 CGTTTCACGTTTTCTTCTCTGAGT 59.732 41.667 4.32 0.00 36.74 3.41
1519 1603 4.752224 CGTTTCACGTTTTCTTCTCTGAG 58.248 43.478 0.00 0.00 36.74 3.35
1556 1640 6.114187 TGGCTCTTCAGAGTTGATAAAGAA 57.886 37.500 5.72 0.00 43.85 2.52
1558 1642 6.205464 TGTTTGGCTCTTCAGAGTTGATAAAG 59.795 38.462 5.72 0.00 43.85 1.85
1566 1668 2.435805 TCAGTGTTTGGCTCTTCAGAGT 59.564 45.455 5.72 0.00 43.85 3.24
1574 1676 1.604278 GGACAGTTCAGTGTTTGGCTC 59.396 52.381 0.00 0.00 0.00 4.70
1584 1686 1.517242 GCAAGACAGGGACAGTTCAG 58.483 55.000 0.00 0.00 0.00 3.02
1625 1732 0.928229 GACGGCACTAAACATAGCGG 59.072 55.000 0.00 0.00 0.00 5.52
1662 1769 6.628919 TTAAGCAAAGTGGAAAACTCCTAC 57.371 37.500 0.00 0.00 38.56 3.18
1663 1770 7.833285 AATTAAGCAAAGTGGAAAACTCCTA 57.167 32.000 0.00 0.00 38.56 2.94
1664 1771 6.731292 AATTAAGCAAAGTGGAAAACTCCT 57.269 33.333 0.00 0.00 38.56 3.69
1679 1787 7.992608 TGAAGCAGGAGATGTTATAATTAAGCA 59.007 33.333 0.00 0.00 0.00 3.91
1680 1788 8.383318 TGAAGCAGGAGATGTTATAATTAAGC 57.617 34.615 0.00 0.00 0.00 3.09
1681 1789 9.553064 ACTGAAGCAGGAGATGTTATAATTAAG 57.447 33.333 0.00 0.00 35.51 1.85
1682 1790 9.905713 AACTGAAGCAGGAGATGTTATAATTAA 57.094 29.630 0.00 0.00 35.51 1.40
1683 1791 9.330063 CAACTGAAGCAGGAGATGTTATAATTA 57.670 33.333 0.00 0.00 35.51 1.40
1684 1792 8.049117 TCAACTGAAGCAGGAGATGTTATAATT 58.951 33.333 0.00 0.00 35.51 1.40
1687 1795 6.155221 ACTCAACTGAAGCAGGAGATGTTATA 59.845 38.462 7.42 0.00 35.51 0.98
1694 1802 3.470709 CAAACTCAACTGAAGCAGGAGA 58.529 45.455 7.42 1.01 35.51 3.71
1725 1833 1.725641 TGCCGAGATGCAGTAAACTG 58.274 50.000 5.73 5.73 46.40 3.16
1813 1923 2.917971 TCAAACGAACAAAAACTTGCCG 59.082 40.909 0.00 0.00 0.00 5.69
1828 1938 4.408694 GGGTTATCGGTCATTTTCAAACG 58.591 43.478 0.00 0.00 0.00 3.60
1880 1990 2.099592 ACTTGCACAGAACATGGTTGTG 59.900 45.455 16.83 16.83 43.78 3.33
1885 2048 3.117794 CAAACACTTGCACAGAACATGG 58.882 45.455 0.00 0.00 0.00 3.66
1954 2117 7.728847 TCGTGTTATCTTTCCATGGATAATG 57.271 36.000 17.06 4.07 36.97 1.90
1955 2118 8.924511 AATCGTGTTATCTTTCCATGGATAAT 57.075 30.769 17.06 11.78 36.97 1.28
1965 2128 8.433421 TTTATGGAGGAATCGTGTTATCTTTC 57.567 34.615 0.00 0.00 0.00 2.62
1978 2141 5.487861 AAATGGGTCCTTTATGGAGGAAT 57.512 39.130 0.88 0.00 46.95 3.01
1995 2158 4.219070 TCTTGAGACAATGCAGGAAAATGG 59.781 41.667 0.00 0.00 0.00 3.16
2068 2231 0.250038 ATTGCAGCGCGTGATATCCT 60.250 50.000 8.43 0.00 0.00 3.24
2069 2232 1.428448 TATTGCAGCGCGTGATATCC 58.572 50.000 8.43 0.00 0.00 2.59
2155 2326 0.463833 GCCATTTGACCCCTACGAGG 60.464 60.000 0.00 0.00 34.30 4.63
2162 2333 2.452600 TGAATAGGCCATTTGACCCC 57.547 50.000 5.01 0.00 0.00 4.95
2234 2405 5.592282 GGGAAGGTGAAGGTACTACTACTAC 59.408 48.000 0.00 0.00 38.49 2.73
2235 2406 5.253798 TGGGAAGGTGAAGGTACTACTACTA 59.746 44.000 0.00 0.00 38.49 1.82
2236 2407 4.045079 TGGGAAGGTGAAGGTACTACTACT 59.955 45.833 0.00 0.00 38.49 2.57
2237 2408 4.347607 TGGGAAGGTGAAGGTACTACTAC 58.652 47.826 0.00 0.00 38.49 2.73
2238 2409 4.680278 TGGGAAGGTGAAGGTACTACTA 57.320 45.455 0.00 0.00 38.49 1.82
2239 2410 3.555117 TGGGAAGGTGAAGGTACTACT 57.445 47.619 0.00 0.00 38.49 2.57
2255 2426 1.807742 CCAAGACGCGTAAATTTGGGA 59.192 47.619 24.90 0.00 35.71 4.37
2282 2453 2.520260 CCTAGGGCAGGGCAATGC 60.520 66.667 0.00 0.00 45.74 3.56
2462 2639 5.615925 AGTACTAAGGCCACCTTGATTAG 57.384 43.478 5.01 4.72 44.44 1.73
2576 5378 2.306847 TCTTTTGTGGAAACTGGCTCC 58.693 47.619 0.00 0.00 0.00 4.70
2577 5379 4.385358 TTTCTTTTGTGGAAACTGGCTC 57.615 40.909 0.00 0.00 0.00 4.70
2578 5380 4.443315 CCATTTCTTTTGTGGAAACTGGCT 60.443 41.667 0.00 0.00 35.84 4.75
2580 5382 5.163416 ACTCCATTTCTTTTGTGGAAACTGG 60.163 40.000 0.00 0.00 41.21 4.00
2582 5384 5.422012 ACACTCCATTTCTTTTGTGGAAACT 59.578 36.000 0.00 0.00 41.21 2.66
2583 5385 5.660460 ACACTCCATTTCTTTTGTGGAAAC 58.340 37.500 0.00 0.00 41.21 2.78
2585 5387 4.952957 TGACACTCCATTTCTTTTGTGGAA 59.047 37.500 0.00 0.00 41.21 3.53
2586 5388 4.531854 TGACACTCCATTTCTTTTGTGGA 58.468 39.130 0.00 0.00 39.61 4.02
2587 5389 4.916983 TGACACTCCATTTCTTTTGTGG 57.083 40.909 0.00 0.00 0.00 4.17
2588 5390 6.098679 TGTTTGACACTCCATTTCTTTTGTG 58.901 36.000 0.00 0.00 0.00 3.33
2589 5391 6.279513 TGTTTGACACTCCATTTCTTTTGT 57.720 33.333 0.00 0.00 0.00 2.83
2590 5392 5.750067 CCTGTTTGACACTCCATTTCTTTTG 59.250 40.000 0.00 0.00 0.00 2.44
2591 5393 5.656416 TCCTGTTTGACACTCCATTTCTTTT 59.344 36.000 0.00 0.00 0.00 2.27
2592 5394 5.067805 GTCCTGTTTGACACTCCATTTCTTT 59.932 40.000 0.00 0.00 35.29 2.52
2593 5395 4.580580 GTCCTGTTTGACACTCCATTTCTT 59.419 41.667 0.00 0.00 35.29 2.52
2594 5396 4.137543 GTCCTGTTTGACACTCCATTTCT 58.862 43.478 0.00 0.00 35.29 2.52
2595 5397 4.137543 AGTCCTGTTTGACACTCCATTTC 58.862 43.478 0.00 0.00 37.73 2.17
2596 5398 4.170468 AGTCCTGTTTGACACTCCATTT 57.830 40.909 0.00 0.00 37.73 2.32
2597 5399 3.864789 AGTCCTGTTTGACACTCCATT 57.135 42.857 0.00 0.00 37.73 3.16
2598 5400 4.080863 GGATAGTCCTGTTTGACACTCCAT 60.081 45.833 0.00 0.00 37.71 3.41
2599 5401 3.260884 GGATAGTCCTGTTTGACACTCCA 59.739 47.826 0.00 0.00 37.71 3.86
2600 5402 3.260884 TGGATAGTCCTGTTTGACACTCC 59.739 47.826 0.00 0.00 37.46 3.85
2601 5403 4.021016 ACTGGATAGTCCTGTTTGACACTC 60.021 45.833 3.05 0.00 44.87 3.51
2602 5404 3.904339 ACTGGATAGTCCTGTTTGACACT 59.096 43.478 3.05 0.00 44.87 3.55
2603 5405 4.273148 ACTGGATAGTCCTGTTTGACAC 57.727 45.455 3.05 0.00 44.87 3.67
2611 5413 7.617041 CTTTAAAGGAAACTGGATAGTCCTG 57.383 40.000 7.37 1.84 42.68 3.86
2659 5461 5.131142 CCTCCAATAGTTGATACTTGGGAGT 59.869 44.000 0.00 0.00 40.02 3.85
2660 5462 5.131142 ACCTCCAATAGTTGATACTTGGGAG 59.869 44.000 0.00 0.00 40.63 4.30
2661 5463 5.036916 ACCTCCAATAGTTGATACTTGGGA 58.963 41.667 0.00 0.00 34.39 4.37
2662 5464 5.373812 ACCTCCAATAGTTGATACTTGGG 57.626 43.478 0.00 0.00 34.39 4.12
2676 5478 6.663734 CCTTCCTTTAATCTGTACCTCCAAT 58.336 40.000 0.00 0.00 0.00 3.16
2700 5502 4.256920 TCTGTGCTTCAGGAGAATTAAGC 58.743 43.478 8.98 0.00 43.76 3.09
2733 5535 6.294120 CCAATCACTGAAGCTGTTCAAATACA 60.294 38.462 0.00 0.00 42.27 2.29
2767 5569 0.179145 GCTGCCAACATCACAGATGC 60.179 55.000 6.90 0.00 33.10 3.91
2788 5590 3.555139 CACAGCATACAGAAGAAGCTAGC 59.445 47.826 6.62 6.62 33.59 3.42
2799 5601 0.179100 ACTAGCCGCACAGCATACAG 60.179 55.000 0.00 0.00 34.23 2.74
2800 5602 0.249120 AACTAGCCGCACAGCATACA 59.751 50.000 0.00 0.00 34.23 2.29
2801 5603 1.369625 AAACTAGCCGCACAGCATAC 58.630 50.000 0.00 0.00 34.23 2.39
2802 5604 2.107950 AAAACTAGCCGCACAGCATA 57.892 45.000 0.00 0.00 34.23 3.14
2804 5606 0.310543 CAAAAACTAGCCGCACAGCA 59.689 50.000 0.00 0.00 34.23 4.41
2806 5608 0.593128 AGCAAAAACTAGCCGCACAG 59.407 50.000 0.00 0.00 0.00 3.66
2807 5609 1.028905 AAGCAAAAACTAGCCGCACA 58.971 45.000 0.00 0.00 0.00 4.57
2808 5610 2.851534 CTAAGCAAAAACTAGCCGCAC 58.148 47.619 0.00 0.00 0.00 5.34
2810 5612 1.468914 AGCTAAGCAAAAACTAGCCGC 59.531 47.619 0.00 0.00 34.56 6.53
2811 5613 3.831715 AAGCTAAGCAAAAACTAGCCG 57.168 42.857 0.00 0.00 34.56 5.52
2812 5614 6.216569 AGAAAAAGCTAAGCAAAAACTAGCC 58.783 36.000 0.00 0.00 34.56 3.93
2814 5616 9.521503 AAAGAGAAAAAGCTAAGCAAAAACTAG 57.478 29.630 0.00 0.00 0.00 2.57
2849 5698 9.322769 AGAAGTATAGTATGTATACAAAGGGGG 57.677 37.037 10.14 0.00 35.74 5.40
2999 6047 7.441458 GCACAGTCCTACTACTAATAAATTGGG 59.559 40.741 0.00 0.00 0.00 4.12
3015 6063 6.212791 AGGTACTAAAAGAATGCACAGTCCTA 59.787 38.462 0.00 0.00 36.02 2.94
3017 6065 5.246307 AGGTACTAAAAGAATGCACAGTCC 58.754 41.667 0.00 0.00 36.02 3.85
3064 6114 5.185056 TCACTGGCGCATATACATAGTACAT 59.815 40.000 10.83 0.00 0.00 2.29
3073 6123 5.362556 AATTTGATCACTGGCGCATATAC 57.637 39.130 10.83 0.00 0.00 1.47
3237 6375 5.552870 ATGCTAAGGAACATCTACGGAAT 57.447 39.130 0.00 0.00 0.00 3.01
3238 6376 5.353394 AATGCTAAGGAACATCTACGGAA 57.647 39.130 0.00 0.00 0.00 4.30
3241 6379 4.837567 GCAAATGCTAAGGAACATCTACG 58.162 43.478 0.00 0.00 38.21 3.51
3369 6507 6.325545 AGTGCCATGATCAATACCAAATCATT 59.674 34.615 0.00 0.00 37.90 2.57
3416 6559 1.361204 TCATGAGGAGGCCTGTTTCA 58.639 50.000 12.00 11.74 31.76 2.69
3428 6571 4.272018 GTCTCGAAATCACCATTCATGAGG 59.728 45.833 0.00 0.00 0.00 3.86
3517 6660 4.005650 GAGCTCAACTGTTCCATTGATCA 58.994 43.478 9.40 0.00 34.43 2.92
3589 6732 2.194271 GCAGCTCAAGTGGATACGTAC 58.806 52.381 0.00 0.00 42.51 3.67
3590 6733 1.822371 TGCAGCTCAAGTGGATACGTA 59.178 47.619 0.00 0.00 42.51 3.57
3591 6734 0.608130 TGCAGCTCAAGTGGATACGT 59.392 50.000 0.00 0.00 42.51 3.57
3592 6735 1.284657 CTGCAGCTCAAGTGGATACG 58.715 55.000 0.00 0.00 42.51 3.06
3610 6758 6.430308 TGTTAACTGACTATCGTTCAGAGACT 59.570 38.462 7.22 0.00 35.62 3.24
3625 6773 3.102052 TGAACTCGGGTGTTAACTGAC 57.898 47.619 7.22 0.00 0.00 3.51
3647 6795 0.602638 ACACACGCACCACATACCAG 60.603 55.000 0.00 0.00 0.00 4.00
3661 6809 6.969828 TCAAACCCAAATGTTTAAACACAC 57.030 33.333 22.78 0.00 42.51 3.82
3697 6845 1.554891 CTAGCCGCACAGCATGATCG 61.555 60.000 0.00 0.00 39.69 3.69
3854 7002 2.090400 ATGCTGTACAGTGTCTGCAG 57.910 50.000 23.44 7.63 40.56 4.41
3970 7118 0.251916 CGTTGTCAAGGATAGGCCCA 59.748 55.000 0.00 0.00 37.37 5.36
4033 7181 9.448438 TTCATTGTGGTGCTATGGTTATATATC 57.552 33.333 0.00 0.00 32.46 1.63
4034 7182 9.806448 TTTCATTGTGGTGCTATGGTTATATAT 57.194 29.630 0.00 0.00 32.46 0.86
4035 7183 9.806448 ATTTCATTGTGGTGCTATGGTTATATA 57.194 29.630 0.00 0.00 32.46 0.86
4036 7184 8.710749 ATTTCATTGTGGTGCTATGGTTATAT 57.289 30.769 0.00 0.00 32.46 0.86
4037 7185 8.532186 AATTTCATTGTGGTGCTATGGTTATA 57.468 30.769 0.00 0.00 32.46 0.98
4038 7186 7.422465 AATTTCATTGTGGTGCTATGGTTAT 57.578 32.000 0.00 0.00 32.46 1.89
4039 7187 6.849085 AATTTCATTGTGGTGCTATGGTTA 57.151 33.333 0.00 0.00 32.46 2.85
4040 7188 5.743636 AATTTCATTGTGGTGCTATGGTT 57.256 34.783 0.00 0.00 32.46 3.67
4041 7189 5.337491 GGAAATTTCATTGTGGTGCTATGGT 60.337 40.000 19.49 0.00 32.46 3.55
4042 7190 5.111293 GGAAATTTCATTGTGGTGCTATGG 58.889 41.667 19.49 0.00 32.46 2.74
4043 7191 4.799949 CGGAAATTTCATTGTGGTGCTATG 59.200 41.667 19.49 0.00 0.00 2.23
4044 7192 4.462483 ACGGAAATTTCATTGTGGTGCTAT 59.538 37.500 19.49 0.00 0.00 2.97
4045 7193 3.823873 ACGGAAATTTCATTGTGGTGCTA 59.176 39.130 19.49 0.00 0.00 3.49
4046 7194 2.627699 ACGGAAATTTCATTGTGGTGCT 59.372 40.909 19.49 0.00 0.00 4.40
4047 7195 3.025287 ACGGAAATTTCATTGTGGTGC 57.975 42.857 19.49 0.00 0.00 5.01
4048 7196 5.768317 AGTTACGGAAATTTCATTGTGGTG 58.232 37.500 19.49 1.94 0.00 4.17
4049 7197 5.768164 AGAGTTACGGAAATTTCATTGTGGT 59.232 36.000 19.49 9.25 0.00 4.16
4050 7198 6.149474 AGAGAGTTACGGAAATTTCATTGTGG 59.851 38.462 19.49 4.26 0.00 4.17
4051 7199 7.133891 AGAGAGTTACGGAAATTTCATTGTG 57.866 36.000 19.49 6.35 0.00 3.33
4065 7233 4.755123 ACCAAAAACATGGAGAGAGTTACG 59.245 41.667 0.00 0.00 43.54 3.18
4114 7283 7.062749 TCTGACCAGTGTAAAGTTTACTGAT 57.937 36.000 22.87 6.24 43.35 2.90
4115 7284 6.474140 TCTGACCAGTGTAAAGTTTACTGA 57.526 37.500 22.87 4.76 43.35 3.41
4116 7285 6.761714 ACTTCTGACCAGTGTAAAGTTTACTG 59.238 38.462 22.87 16.58 41.04 2.74
4117 7286 6.761714 CACTTCTGACCAGTGTAAAGTTTACT 59.238 38.462 22.87 6.30 37.47 2.24
4118 7287 6.511282 GCACTTCTGACCAGTGTAAAGTTTAC 60.511 42.308 17.26 17.26 43.21 2.01
4119 7288 5.526111 GCACTTCTGACCAGTGTAAAGTTTA 59.474 40.000 10.31 0.00 43.21 2.01
4121 7290 3.877508 GCACTTCTGACCAGTGTAAAGTT 59.122 43.478 10.31 0.00 43.21 2.66
4135 7304 3.859443 ACAATGAGCTAGAGCACTTCTG 58.141 45.455 4.01 0.16 45.16 3.02
4166 7335 6.144402 GCTCAAAACAAAGACACCACATAATG 59.856 38.462 0.00 0.00 0.00 1.90
4170 7339 3.446873 TGCTCAAAACAAAGACACCACAT 59.553 39.130 0.00 0.00 0.00 3.21
4213 7382 1.575447 ATGGCCCCTCCTCAAAGTCC 61.575 60.000 0.00 0.00 35.26 3.85
4241 7410 2.010817 CGCCGAAGCTTGTGTTTGC 61.011 57.895 2.10 0.00 36.60 3.68
4303 7472 1.107538 TCGACTCGATCATCCACCCC 61.108 60.000 0.00 0.00 0.00 4.95
4342 7511 1.239296 CGGTGTACTGGTCGGAGTCA 61.239 60.000 0.00 0.00 0.00 3.41
4384 7553 1.612395 CCTTGCCGGAGAGAAGCTCT 61.612 60.000 5.05 0.00 44.28 4.09
4711 7880 4.659172 TTCAACCCAGCAGCCCCG 62.659 66.667 0.00 0.00 0.00 5.73
4774 7943 4.341366 TTCAGAAGATCAGAACAGCACA 57.659 40.909 0.00 0.00 0.00 4.57
4804 7973 0.828022 TGCAGGGGAGGTTACATACG 59.172 55.000 0.00 0.00 0.00 3.06
4805 7974 2.421529 CCTTGCAGGGGAGGTTACATAC 60.422 54.545 7.05 0.00 0.00 2.39
4806 7975 1.843851 CCTTGCAGGGGAGGTTACATA 59.156 52.381 7.05 0.00 0.00 2.29
4807 7976 0.625849 CCTTGCAGGGGAGGTTACAT 59.374 55.000 7.05 0.00 0.00 2.29
4949 8121 3.753272 TCATGGCTTGCTACTTTCTGAAC 59.247 43.478 0.00 0.00 0.00 3.18
5004 8176 8.620116 TGAAACAATTCTTACATCTCACATCA 57.380 30.769 0.00 0.00 36.48 3.07
5005 8177 9.552114 CTTGAAACAATTCTTACATCTCACATC 57.448 33.333 0.00 0.00 36.48 3.06
5027 8199 5.311265 ACTGCATTGAAGAGATGAACTTGA 58.689 37.500 0.00 0.00 0.00 3.02
5049 8221 9.134734 CAGAGACAAGATTACTGAACTTTCTAC 57.865 37.037 0.00 0.00 0.00 2.59
5084 8256 8.405531 CCAAACCAAGTCAATAATATTCGACAT 58.594 33.333 12.52 1.67 0.00 3.06
5085 8257 7.608376 TCCAAACCAAGTCAATAATATTCGACA 59.392 33.333 12.52 0.00 0.00 4.35
5086 8258 7.908601 GTCCAAACCAAGTCAATAATATTCGAC 59.091 37.037 0.00 0.00 0.00 4.20
5087 8259 7.827236 AGTCCAAACCAAGTCAATAATATTCGA 59.173 33.333 0.00 0.00 0.00 3.71
5088 8260 7.910162 CAGTCCAAACCAAGTCAATAATATTCG 59.090 37.037 0.00 0.00 0.00 3.34
5089 8261 8.739972 ACAGTCCAAACCAAGTCAATAATATTC 58.260 33.333 0.00 0.00 0.00 1.75
5090 8262 8.522830 CACAGTCCAAACCAAGTCAATAATATT 58.477 33.333 0.00 0.00 0.00 1.28
5091 8263 7.669722 ACACAGTCCAAACCAAGTCAATAATAT 59.330 33.333 0.00 0.00 0.00 1.28
5092 8264 7.001674 ACACAGTCCAAACCAAGTCAATAATA 58.998 34.615 0.00 0.00 0.00 0.98
5093 8265 5.833131 ACACAGTCCAAACCAAGTCAATAAT 59.167 36.000 0.00 0.00 0.00 1.28
5094 8266 5.067153 CACACAGTCCAAACCAAGTCAATAA 59.933 40.000 0.00 0.00 0.00 1.40
5095 8267 4.578516 CACACAGTCCAAACCAAGTCAATA 59.421 41.667 0.00 0.00 0.00 1.90
5096 8268 3.381272 CACACAGTCCAAACCAAGTCAAT 59.619 43.478 0.00 0.00 0.00 2.57
5097 8269 2.752354 CACACAGTCCAAACCAAGTCAA 59.248 45.455 0.00 0.00 0.00 3.18
5098 8270 2.290641 ACACACAGTCCAAACCAAGTCA 60.291 45.455 0.00 0.00 0.00 3.41
5307 8480 1.385347 ATCCCCGGGGCATGACTAA 60.385 57.895 36.68 16.10 34.68 2.24
5381 8554 3.760151 TCGTCTTTCTACCGAGGATCAAA 59.240 43.478 0.00 0.00 33.17 2.69
5465 8638 4.202161 GCTCTCCTCTAAATCAACGATCCA 60.202 45.833 0.00 0.00 0.00 3.41
5591 8764 3.334583 TTGCAACTTCTAATCTCGCCT 57.665 42.857 0.00 0.00 0.00 5.52
5737 8910 2.173669 CGATCGGCGTGGAAAGCAT 61.174 57.895 7.38 0.00 45.63 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.