AutoCloner

Multiple sequence alignment - TraesCS3A01G293600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G293600	chr3A	100.000	3266	0	0	1	3266	525642890	525639625	0.000000e+00	6032
1	TraesCS3A01G293600	chr3D	91.591	1546	79	25	622	2160	403705324	403703823	0.000000e+00	2087
2	TraesCS3A01G293600	chr3D	96.754	801	23	3	2467	3266	403703356	403702558	0.000000e+00	1332
3	TraesCS3A01G293600	chr3D	96.190	315	10	2	2192	2504	403703829	403703515	6.250000e-142	514
4	TraesCS3A01G293600	chr3B	93.663	1294	72	3	1161	2444	529808541	529807248	0.000000e+00	1927
5	TraesCS3A01G293600	chr3B	96.271	724	25	2	2545	3266	529805742	529805019	0.000000e+00	1186
6	TraesCS3A01G293600	chr3B	92.576	458	27	7	629	1085	529808981	529808530	0.000000e+00	651
7	TraesCS3A01G293600	chr3B	96.226	106	4	0	2440	2545	29709452	29709557	1.200000e-39	174
8	TraesCS3A01G293600	chr5A	94.992	619	26	3	1	619	591866396	591867009	0.000000e+00	966
9	TraesCS3A01G293600	chr5A	92.076	631	42	7	1	631	601496065	601496687	0.000000e+00	881
10	TraesCS3A01G293600	chr7A	93.710	620	34	3	1	620	694369786	694370400	0.000000e+00	924
11	TraesCS3A01G293600	chr7A	89.499	619	58	5	1	619	540961193	540961804	0.000000e+00	776
12	TraesCS3A01G293600	chr4A	92.097	620	43	5	1	619	530182451	530183065	0.000000e+00	869
13	TraesCS3A01G293600	chr4A	86.656	622	67	10	2	619	648411514	648412123	0.000000e+00	675
14	TraesCS3A01G293600	chr4A	85.900	617	75	8	2	618	557243907	557244511	0.000000e+00	647
15	TraesCS3A01G293600	chr4B	87.662	616	67	7	3	617	413168045	413168652	0.000000e+00	708
16	TraesCS3A01G293600	chr4B	95.283	106	5	0	2440	2545	646647385	646647280	5.600000e-38	169
17	TraesCS3A01G293600	chr5D	91.147	497	38	4	1	497	385416317	385416807	0.000000e+00	669
18	TraesCS3A01G293600	chr7D	94.643	112	6	0	2434	2545	237412571	237412682	1.200000e-39	174
19	TraesCS3A01G293600	chr7D	93.636	110	7	0	2442	2551	139827767	139827658	7.250000e-37	165
20	TraesCS3A01G293600	chr1D	96.190	105	4	0	2441	2545	355830362	355830258	4.330000e-39	172
21	TraesCS3A01G293600	chr1D	95.238	105	5	0	2441	2545	207230440	207230544	2.020000e-37	167
22	TraesCS3A01G293600	chr6D	95.238	105	5	0	2441	2545	310519751	310519647	2.020000e-37	167

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G293600	chr3A	525639625	525642890	3265	True	6032.000000	6032	100.000	1	3266	1	chr3A.!!$R1	3265
1	TraesCS3A01G293600	chr3D	403702558	403705324	2766	True	1311.000000	2087	94.845	622	3266	3	chr3D.!!$R1	2644
2	TraesCS3A01G293600	chr3B	529805019	529808981	3962	True	1254.666667	1927	94.170	629	3266	3	chr3B.!!$R1	2637
3	TraesCS3A01G293600	chr5A	591866396	591867009	613	False	966.000000	966	94.992	1	619	1	chr5A.!!$F1	618
4	TraesCS3A01G293600	chr5A	601496065	601496687	622	False	881.000000	881	92.076	1	631	1	chr5A.!!$F2	630
5	TraesCS3A01G293600	chr7A	694369786	694370400	614	False	924.000000	924	93.710	1	620	1	chr7A.!!$F2	619
6	TraesCS3A01G293600	chr7A	540961193	540961804	611	False	776.000000	776	89.499	1	619	1	chr7A.!!$F1	618
7	TraesCS3A01G293600	chr4A	530182451	530183065	614	False	869.000000	869	92.097	1	619	1	chr4A.!!$F1	618
8	TraesCS3A01G293600	chr4A	648411514	648412123	609	False	675.000000	675	86.656	2	619	1	chr4A.!!$F3	617
9	TraesCS3A01G293600	chr4A	557243907	557244511	604	False	647.000000	647	85.900	2	618	1	chr4A.!!$F2	616
10	TraesCS3A01G293600	chr4B	413168045	413168652	607	False	708.000000	708	87.662	3	617	1	chr4B.!!$F1	614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
524	526	0.313987	GTTGTGCCTTGTAACCCTGC	59.686	55.0	0.00	0.0	0.00	4.85	F
1714	1735	0.605083	TGCGCTTCAGAGAGATGTGT	59.395	50.0	9.73	0.0	35.13	3.72	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2126	2148	0.686441	ATGCGGGTACAGGCTACAGA	60.686	55.0	8.57	0.0	0.00	3.41	R
3230	4668	0.037975	GCAAACCATCCTGTGCTTGG	60.038	55.0	0.00	0.0	34.13	3.61	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
89	91	0.324738	TGTGGAGCTCCCTTCGAGAT	60.325	55.000	29.95	0.00	41.63	2.75
119	121	2.203523	TCGTGGAACCCGAGTGGA	60.204	61.111	0.00	0.00	37.49	4.02
207	209	2.046314	GGGCGCTTGCTTGGTCTA	60.046	61.111	7.64	0.00	39.13	2.59
241	243	3.686016	GGAACAAAGCTACCATTGAGGA	58.314	45.455	2.92	0.00	41.22	3.71
257	259	8.360390	ACCATTGAGGAAATTTTCTTTAGACAC	58.640	33.333	0.00	0.00	41.22	3.67
325	327	3.241177	GTTGACGAGACAACGGGC	58.759	61.111	3.10	0.00	40.17	6.13
410	412	2.317149	GATAGAGGGCTGCAACGGCT	62.317	60.000	0.50	0.20	41.91	5.52
458	460	4.847444	GCTCCTGGAGCGGCCTTC	62.847	72.222	31.03	6.22	45.85	3.46
464	466	0.322008	CTGGAGCGGCCTTCTTCTTT	60.322	55.000	0.00	0.00	37.63	2.52
475	477	1.278127	CTTCTTCTTTCCTACCGCCCA	59.722	52.381	0.00	0.00	0.00	5.36
504	506	1.994507	CTGCGTCGCTGTACTAGGCT	61.995	60.000	19.50	0.00	0.00	4.58
524	526	0.313987	GTTGTGCCTTGTAACCCTGC	59.686	55.000	0.00	0.00	0.00	4.85
559	566	4.156190	TGTTTGTCTTTGTACTTTGCCGAA	59.844	37.500	0.00	0.00	0.00	4.30
574	582	8.556213	ACTTTGCCGAATATTTGTACTCTAAA	57.444	30.769	1.99	0.00	0.00	1.85
590	598	6.875972	ACTCTAAAGGCCTCATTCTTAAGA	57.124	37.500	5.23	0.00	0.00	2.10
658	666	4.515718	TGCCAATGCACACCATCA	57.484	50.000	0.00	0.00	44.23	3.07
676	684	1.078143	AGCCCAGCTTCGGTCAATC	60.078	57.895	0.00	0.00	33.89	2.67
717	725	2.880268	TCGTTTAGTCTTCGTCCTGTCA	59.120	45.455	0.00	0.00	0.00	3.58
766	777	1.302993	CGGACGTTTTCCCCACCAT	60.303	57.895	0.00	0.00	42.27	3.55
847	858	2.354773	CTTCCCGAGCCGCGTATC	60.355	66.667	4.92	0.89	38.67	2.24
1009	1021	1.530655	CCCAACCCCAGCGAAAACT	60.531	57.895	0.00	0.00	0.00	2.66
1018	1030	1.448013	AGCGAAAACTCTAGCCGGC	60.448	57.895	21.89	21.89	0.00	6.13
1021	1033	2.436115	AAAACTCTAGCCGGCGCC	60.436	61.111	23.20	19.07	34.57	6.53
1022	1034	4.814294	AAACTCTAGCCGGCGCCG	62.814	66.667	41.00	41.00	39.44	6.46
1049	1061	4.154347	GTCTCTCGGCAGGCCCAG	62.154	72.222	0.00	0.99	0.00	4.45
1093	1105	1.442857	GGTAGCGGCGATGATCGAG	60.443	63.158	20.25	12.38	43.74	4.04
1094	1106	2.083522	GTAGCGGCGATGATCGAGC	61.084	63.158	20.25	21.20	43.74	5.03
1119	1131	3.197790	CCGCTCGGCAACATCTGG	61.198	66.667	0.00	0.00	0.00	3.86
1126	1138	4.424711	GCAACATCTGGCCCCGGA	62.425	66.667	0.73	0.00	35.60	5.14
1127	1139	2.124570	CAACATCTGGCCCCGGAG	60.125	66.667	0.73	0.00	34.49	4.63
1128	1140	4.115199	AACATCTGGCCCCGGAGC	62.115	66.667	0.73	0.00	34.49	4.70
1130	1142	3.801997	CATCTGGCCCCGGAGCTT	61.802	66.667	8.25	0.00	34.49	3.74
1131	1143	3.483869	ATCTGGCCCCGGAGCTTC	61.484	66.667	8.25	0.00	34.49	3.86
1311	1329	2.581354	CCAGCTCGTCCTTCCCAG	59.419	66.667	0.00	0.00	0.00	4.45
1343	1361	1.461091	AAACTCCGAGCTCGTGTCCA	61.461	55.000	32.41	11.37	37.74	4.02
1348	1366	1.065928	CGAGCTCGTGTCCATACCC	59.934	63.158	27.79	0.00	34.11	3.69
1371	1389	1.129437	GAGACTGCATTTTCTGACGCC	59.871	52.381	0.00	0.00	0.00	5.68
1481	1499	4.280929	TGAAGATTCAGAGAAGGAACGTCA	59.719	41.667	0.00	0.00	34.29	4.35
1483	1501	4.082845	AGATTCAGAGAAGGAACGTCAGA	58.917	43.478	0.00	0.00	39.91	3.27
1675	1696	3.005367	TCGTATTCTTATGATGCGGCAGA	59.995	43.478	9.25	0.00	0.00	4.26
1687	1708	1.517257	CGGCAGAAGTACGCAGAGG	60.517	63.158	0.00	0.00	0.00	3.69
1708	1729	3.247173	GGACATTAATGCGCTTCAGAGAG	59.753	47.826	15.48	0.00	0.00	3.20
1711	1732	4.510711	ACATTAATGCGCTTCAGAGAGATG	59.489	41.667	15.48	3.49	0.00	2.90
1714	1735	0.605083	TGCGCTTCAGAGAGATGTGT	59.395	50.000	9.73	0.00	35.13	3.72
1715	1736	0.997932	GCGCTTCAGAGAGATGTGTG	59.002	55.000	0.00	0.00	35.13	3.82
1718	1739	3.062763	CGCTTCAGAGAGATGTGTGTTT	58.937	45.455	0.00	0.00	0.00	2.83
1836	1857	1.396653	CAGATCTCAACAATGGGGGC	58.603	55.000	0.00	0.00	0.00	5.80
1929	1950	7.807977	ATCAGTCTTTGTCTGTTGTTTATGT	57.192	32.000	0.00	0.00	34.86	2.29
1933	1954	7.754924	CAGTCTTTGTCTGTTGTTTATGTGTTT	59.245	33.333	0.00	0.00	0.00	2.83
1973	1995	6.432162	TCTTAGATGTGCTGATTTTTGCTCTT	59.568	34.615	0.00	0.00	0.00	2.85
2005	2027	1.379916	CAAGGGTGATGCAGGTGGA	59.620	57.895	0.00	0.00	0.00	4.02
2074	2096	5.574891	TCGCATATATTTTGGTGTTGCTT	57.425	34.783	0.00	0.00	0.00	3.91
2168	2190	2.282555	CCGTGCTATGAAACAGTGATCG	59.717	50.000	0.00	0.00	0.00	3.69
2206	2237	9.774742	GACTTTGTTTGATGTAAAGCCTATTAG	57.225	33.333	0.00	0.00	35.40	1.73
2247	2278	2.104792	CTCACCTGTTCCTTGTCTCCAA	59.895	50.000	0.00	0.00	0.00	3.53
2522	3219	6.183360	GGAGCATGAATTCAATATGGTATCCG	60.183	42.308	13.09	0.00	33.19	4.18
2525	3222	6.676456	GCATGAATTCAATATGGTATCCGAGC	60.676	42.308	13.09	0.00	0.00	5.03
2532	3229	0.394565	ATGGTATCCGAGCCAAGAGC	59.605	55.000	0.00	0.00	44.25	4.09
2554	3990	7.556996	AGAGCTCTTGAATTCAATATGCTCTTT	59.443	33.333	35.59	26.55	46.88	2.52
2568	4004	1.464997	GCTCTTTTGGCTTACTCCGTG	59.535	52.381	0.00	0.00	0.00	4.94
2639	4075	4.637977	TGGCACGTGCTCATATTATTTTGA	59.362	37.500	36.84	6.80	41.70	2.69
2667	4103	0.764369	TGGGCCTGTGTCTGAAGTCT	60.764	55.000	4.53	0.00	0.00	3.24
2669	4105	0.394565	GGCCTGTGTCTGAAGTCTGT	59.605	55.000	0.00	0.00	0.00	3.41
2676	4112	5.473846	CCTGTGTCTGAAGTCTGTAGAGTAA	59.526	44.000	0.00	0.00	0.00	2.24
2754	4190	1.734707	GCAGCTGATTGGTCATTGTGC	60.735	52.381	20.43	0.00	32.98	4.57
2820	4258	5.006386	ACCAGAGATGATTTTGGACTGAAC	58.994	41.667	0.00	0.00	34.76	3.18
2838	4276	3.383185	TGAACGGAGGCTTTGACAAATTT	59.617	39.130	0.05	0.00	0.00	1.82
2985	4423	8.299570	TCTCCTTTTCTTTTGATATTTGTGAGC	58.700	33.333	0.00	0.00	0.00	4.26
3084	4522	3.498397	TCTTAAAAGGCTGAGCAAGTTCG	59.502	43.478	6.82	0.00	0.00	3.95
3127	4565	9.342308	TGGATTTGAGGAAAATGATATGAGTAC	57.658	33.333	0.00	0.00	38.64	2.73
3244	4682	0.038744	AAGGACCAAGCACAGGATGG	59.961	55.000	0.00	0.00	43.62	3.51

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
15	16	2.037121	GGCTGCTAGATTCCTCTTCTCC	59.963	54.545	0.00	0.00	32.66	3.71
89	91	2.125952	CACGAGCATCCAGTCGCA	60.126	61.111	0.00	0.00	39.89	5.10
119	121	3.324846	TGAGCCCATATAGTTCAGCGAAT	59.675	43.478	0.00	0.00	0.00	3.34
207	209	0.892755	TTGTTCCGCGTAGTCCAGAT	59.107	50.000	4.92	0.00	0.00	2.90
241	243	4.022329	CAGCCGGGTGTCTAAAGAAAATTT	60.022	41.667	25.51	0.00	0.00	1.82
257	259	2.613026	TATACACAACATCAGCCGGG	57.387	50.000	2.18	0.00	0.00	5.73
456	458	1.002773	GTGGGCGGTAGGAAAGAAGAA	59.997	52.381	0.00	0.00	0.00	2.52
457	459	0.611714	GTGGGCGGTAGGAAAGAAGA	59.388	55.000	0.00	0.00	0.00	2.87
458	460	0.739813	CGTGGGCGGTAGGAAAGAAG	60.740	60.000	0.00	0.00	0.00	2.85
504	506	1.686355	CAGGGTTACAAGGCACAACA	58.314	50.000	0.00	0.00	0.00	3.33
559	566	8.718656	AGAATGAGGCCTTTAGAGTACAAATAT	58.281	33.333	6.77	0.00	0.00	1.28
574	582	1.486726	CCGGTCTTAAGAATGAGGCCT	59.513	52.381	3.86	3.86	34.85	5.19
626	634	2.803479	GCAAGCCATAGCCTGTGC	59.197	61.111	0.00	0.00	41.25	4.57
643	651	1.514087	GGCTGATGGTGTGCATTGG	59.486	57.895	0.00	0.00	0.00	3.16
658	666	1.078143	GATTGACCGAAGCTGGGCT	60.078	57.895	4.03	0.00	42.56	5.19
676	684	2.752238	AGACCAGACGAGAGGCCG	60.752	66.667	0.00	0.00	43.69	6.13
757	765	3.405093	GAGCGCATGATGGTGGGGA	62.405	63.158	11.47	0.00	33.12	4.81
829	840	3.843117	GATACGCGGCTCGGGAAGG	62.843	68.421	12.47	0.00	42.31	3.46
831	842	3.908081	GGATACGCGGCTCGGGAA	61.908	66.667	12.47	0.00	42.31	3.97
847	858	3.057033	ACGAATCGAGGTATTTATCGGGG	60.057	47.826	10.55	0.00	39.38	5.73
906	917	1.985895	GAAAGGGGAGGGAAAGAGTGA	59.014	52.381	0.00	0.00	0.00	3.41
1021	1033	2.818132	GAGAGACATGGGAGGGCG	59.182	66.667	0.00	0.00	0.00	6.13
1022	1034	2.801631	CCGAGAGACATGGGAGGGC	61.802	68.421	0.00	0.00	0.00	5.19
1025	1037	1.440893	CTGCCGAGAGACATGGGAG	59.559	63.158	0.00	0.00	34.81	4.30
1026	1038	2.060383	CCTGCCGAGAGACATGGGA	61.060	63.158	0.00	0.00	0.00	4.37
1029	1041	2.202987	GGCCTGCCGAGAGACATG	60.203	66.667	0.00	0.00	0.00	3.21
1072	1084	4.664677	ATCATCGCCGCTACCGCC	62.665	66.667	0.00	0.00	0.00	6.13
1073	1085	3.106407	GATCATCGCCGCTACCGC	61.106	66.667	0.00	0.00	0.00	5.68
1074	1086	2.801162	CGATCATCGCCGCTACCG	60.801	66.667	0.00	0.00	31.14	4.02
1075	1087	1.442857	CTCGATCATCGCCGCTACC	60.443	63.158	0.80	0.00	40.21	3.18
1076	1088	2.083522	GCTCGATCATCGCCGCTAC	61.084	63.158	0.80	0.00	40.21	3.58
1077	1089	2.255554	GCTCGATCATCGCCGCTA	59.744	61.111	0.80	0.00	40.21	4.26
1078	1090	4.654412	GGCTCGATCATCGCCGCT	62.654	66.667	17.07	0.00	40.21	5.52
1113	1125	3.764160	GAAGCTCCGGGGCCAGATG	62.764	68.421	26.35	0.00	0.00	2.90
1114	1126	3.483869	GAAGCTCCGGGGCCAGAT	61.484	66.667	26.35	7.02	0.00	2.90
1311	1329	1.265905	CGGAGTTTTTGTACACAGGCC	59.734	52.381	0.00	0.00	0.00	5.19
1343	1361	3.525199	AGAAAATGCAGTCTCCAGGGTAT	59.475	43.478	0.00	0.00	0.00	2.73
1348	1366	2.414481	CGTCAGAAAATGCAGTCTCCAG	59.586	50.000	0.00	0.00	0.00	3.86
1371	1389	9.167311	CCTTGAATATCCCTTAAAATCCTATCG	57.833	37.037	0.00	0.00	0.00	2.92
1481	1499	4.397417	GCTTGATTCTAATGTGCCTTGTCT	59.603	41.667	0.00	0.00	0.00	3.41
1483	1501	4.081406	TGCTTGATTCTAATGTGCCTTGT	58.919	39.130	0.00	0.00	0.00	3.16
1675	1696	3.871594	GCATTAATGTCCTCTGCGTACTT	59.128	43.478	16.61	0.00	0.00	2.24
1687	1708	4.115516	TCTCTCTGAAGCGCATTAATGTC	58.884	43.478	16.61	9.09	0.00	3.06
1708	1729	3.047796	CTGCAAAGCTCAAACACACATC	58.952	45.455	0.00	0.00	0.00	3.06
1711	1732	1.203065	GCTGCAAAGCTCAAACACAC	58.797	50.000	0.00	0.00	0.00	3.82
1714	1735	1.409790	ACATGCTGCAAAGCTCAAACA	59.590	42.857	6.36	0.00	35.49	2.83
1715	1736	1.790623	CACATGCTGCAAAGCTCAAAC	59.209	47.619	6.36	0.00	35.49	2.93
1718	1739	1.287815	GCACATGCTGCAAAGCTCA	59.712	52.632	6.36	0.00	46.29	4.26
1762	1783	3.008923	TCATTGTTGAGGTATGCAGTCCA	59.991	43.478	11.65	0.00	0.00	4.02
1836	1857	5.124457	CCAATGTAGAATTCACAGTTGAGGG	59.876	44.000	8.44	3.87	31.71	4.30
1973	1995	5.298989	TCACCCTTGTAGTCTGCTAAAAA	57.701	39.130	0.00	0.00	0.00	1.94
2005	2027	4.312443	CTTCATGGCAAAAGCTTCAATGT	58.688	39.130	0.00	0.00	0.00	2.71
2074	2096	2.680841	GTTGCGGCATCTTGGTTATGTA	59.319	45.455	2.28	0.00	0.00	2.29
2125	2147	0.901114	TGCGGGTACAGGCTACAGAA	60.901	55.000	8.57	0.00	0.00	3.02
2126	2148	0.686441	ATGCGGGTACAGGCTACAGA	60.686	55.000	8.57	0.00	0.00	3.41
2168	2190	5.507077	TCAAACAAAGTCTTGCGATGTAAC	58.493	37.500	0.00	0.00	35.84	2.50
2206	2237	4.216257	TGAGGCTACATTTTGAGTCTTTGC	59.784	41.667	0.00	0.00	0.00	3.68
2532	3229	7.222224	GCCAAAAGAGCATATTGAATTCAAGAG	59.778	37.037	24.17	16.93	39.47	2.85
2639	4075	1.149174	CACAGGCCCACTCAACAGT	59.851	57.895	0.00	0.00	0.00	3.55
2667	4103	7.817962	GGAAGCTAAACATCTTGTTACTCTACA	59.182	37.037	0.00	0.00	40.14	2.74
2669	4105	7.903145	TGGAAGCTAAACATCTTGTTACTCTA	58.097	34.615	0.00	0.00	40.14	2.43
2676	4112	4.762251	GGTTCTGGAAGCTAAACATCTTGT	59.238	41.667	5.42	0.00	36.02	3.16
2754	4190	9.888878	CAGCACCTCAATAAACAATAGATATTG	57.111	33.333	10.36	10.36	46.41	1.90
2820	4258	2.979813	CGAAAATTTGTCAAAGCCTCCG	59.020	45.455	4.03	0.82	0.00	4.63
2838	4276	7.505258	TCAGATATACCCATTCAAATGACGAA	58.495	34.615	4.30	0.00	38.70	3.85
3084	4522	8.991243	TCAAATCCAAACATCATTTGAAGATC	57.009	30.769	4.26	0.00	41.41	2.75
3230	4668	0.037975	GCAAACCATCCTGTGCTTGG	60.038	55.000	0.00	0.00	34.13	3.61
3244	4682	3.890128	GAGTAGGCTTCAAAGTGCAAAC	58.110	45.455	0.00	0.00	0.00	2.93

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.