Multiple sequence alignment - TraesCS3A01G292900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G292900 chr3A 100.000 2255 0 0 1 2255 523610213 523607959 0.000000e+00 4165.0
1 TraesCS3A01G292900 chr3D 89.296 1364 77 28 279 1611 402748258 402746933 0.000000e+00 1646.0
2 TraesCS3A01G292900 chr3D 91.084 572 30 5 1685 2255 402746934 402746383 0.000000e+00 754.0
3 TraesCS3A01G292900 chr3D 92.574 202 12 1 1 199 491992268 491992067 1.020000e-73 287.0
4 TraesCS3A01G292900 chr3D 92.424 198 14 1 1 197 495167505 495167308 4.740000e-72 281.0
5 TraesCS3A01G292900 chr3B 92.451 1179 40 22 303 1476 528426205 528425071 0.000000e+00 1639.0
6 TraesCS3A01G292900 chr3B 91.667 312 19 3 1944 2255 528420471 528420167 2.070000e-115 425.0
7 TraesCS3A01G292900 chr3B 95.902 122 5 0 1726 1847 528423990 528423869 4.910000e-47 198.0
8 TraesCS3A01G292900 chr3B 80.682 264 27 11 996 1256 528493121 528492879 1.380000e-42 183.0
9 TraesCS3A01G292900 chr3B 91.736 121 9 1 1833 1952 528423368 528423248 1.390000e-37 167.0
10 TraesCS3A01G292900 chr3B 91.765 85 6 1 233 317 528426501 528426418 1.420000e-22 117.0
11 TraesCS3A01G292900 chr3B 92.188 64 2 3 189 252 528426631 528426571 1.110000e-13 87.9
12 TraesCS3A01G292900 chr1D 91.626 203 15 2 1 202 37440718 37440919 1.710000e-71 279.0
13 TraesCS3A01G292900 chr1D 91.919 198 15 1 1 197 289773760 289773957 2.210000e-70 276.0
14 TraesCS3A01G292900 chr5A 91.584 202 16 1 1 201 702460849 702461050 6.130000e-71 278.0
15 TraesCS3A01G292900 chr5A 90.909 198 17 1 1 197 632833938 632834135 4.780000e-67 265.0
16 TraesCS3A01G292900 chr7D 91.414 198 16 1 1 197 506498842 506498645 1.030000e-68 270.0
17 TraesCS3A01G292900 chr2A 90.099 202 17 3 1 201 176659060 176659259 2.220000e-65 259.0
18 TraesCS3A01G292900 chrUn 90.355 197 18 1 1 196 35417348 35417152 7.990000e-65 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G292900 chr3A 523607959 523610213 2254 True 4165.000000 4165 100.000000 1 2255 1 chr3A.!!$R1 2254
1 TraesCS3A01G292900 chr3D 402746383 402748258 1875 True 1200.000000 1646 90.190000 279 2255 2 chr3D.!!$R3 1976
2 TraesCS3A01G292900 chr3B 528420167 528426631 6464 True 438.983333 1639 92.618167 189 2255 6 chr3B.!!$R2 2066

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 662 0.588252 ATTAGCCGCGCTATGCAAAG 59.412 50.0 5.56 0.0 46.97 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2147 6690 1.078143 ATCTCCCTTGACGCCTTGC 60.078 57.895 0.0 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.445357 TGACCAACTTTTAAACTGAAGACC 57.555 37.500 0.00 0.00 0.00 3.85
24 25 6.184789 TGACCAACTTTTAAACTGAAGACCT 58.815 36.000 0.00 0.00 0.00 3.85
25 26 6.317893 TGACCAACTTTTAAACTGAAGACCTC 59.682 38.462 0.00 0.00 0.00 3.85
26 27 6.184789 ACCAACTTTTAAACTGAAGACCTCA 58.815 36.000 0.00 0.00 0.00 3.86
27 28 6.661805 ACCAACTTTTAAACTGAAGACCTCAA 59.338 34.615 0.00 0.00 32.17 3.02
28 29 7.342026 ACCAACTTTTAAACTGAAGACCTCAAT 59.658 33.333 0.00 0.00 32.17 2.57
29 30 8.197439 CCAACTTTTAAACTGAAGACCTCAATT 58.803 33.333 0.00 0.00 32.17 2.32
38 39 9.750125 AAACTGAAGACCTCAATTAATTTTGAC 57.250 29.630 0.00 0.00 32.17 3.18
39 40 7.584987 ACTGAAGACCTCAATTAATTTTGACG 58.415 34.615 0.00 0.00 32.17 4.35
40 41 7.444183 ACTGAAGACCTCAATTAATTTTGACGA 59.556 33.333 0.00 0.00 32.17 4.20
41 42 7.581476 TGAAGACCTCAATTAATTTTGACGAC 58.419 34.615 0.00 0.00 32.39 4.34
42 43 7.444183 TGAAGACCTCAATTAATTTTGACGACT 59.556 33.333 0.00 0.00 32.39 4.18
43 44 7.745620 AGACCTCAATTAATTTTGACGACTT 57.254 32.000 0.00 0.00 32.39 3.01
44 45 8.842358 AGACCTCAATTAATTTTGACGACTTA 57.158 30.769 0.00 0.00 32.39 2.24
45 46 9.280174 AGACCTCAATTAATTTTGACGACTTAA 57.720 29.630 0.00 0.00 32.39 1.85
46 47 9.887406 GACCTCAATTAATTTTGACGACTTAAA 57.113 29.630 0.00 0.00 32.39 1.52
96 97 7.756395 AAAGAATTGAATGAGAGCTTTGAGA 57.244 32.000 0.00 0.00 0.00 3.27
97 98 7.756395 AAGAATTGAATGAGAGCTTTGAGAA 57.244 32.000 0.00 0.00 0.00 2.87
98 99 7.756395 AGAATTGAATGAGAGCTTTGAGAAA 57.244 32.000 0.00 0.00 0.00 2.52
99 100 8.350852 AGAATTGAATGAGAGCTTTGAGAAAT 57.649 30.769 0.00 0.00 0.00 2.17
100 101 8.804204 AGAATTGAATGAGAGCTTTGAGAAATT 58.196 29.630 0.00 0.00 0.00 1.82
104 105 9.850628 TTGAATGAGAGCTTTGAGAAATTATTG 57.149 29.630 0.00 0.00 0.00 1.90
105 106 9.234827 TGAATGAGAGCTTTGAGAAATTATTGA 57.765 29.630 0.00 0.00 0.00 2.57
106 107 9.500864 GAATGAGAGCTTTGAGAAATTATTGAC 57.499 33.333 0.00 0.00 0.00 3.18
107 108 8.804912 ATGAGAGCTTTGAGAAATTATTGACT 57.195 30.769 0.00 0.00 0.00 3.41
108 109 8.627208 TGAGAGCTTTGAGAAATTATTGACTT 57.373 30.769 0.00 0.00 0.00 3.01
109 110 8.509690 TGAGAGCTTTGAGAAATTATTGACTTG 58.490 33.333 0.00 0.00 0.00 3.16
110 111 7.824672 AGAGCTTTGAGAAATTATTGACTTGG 58.175 34.615 0.00 0.00 0.00 3.61
111 112 7.449704 AGAGCTTTGAGAAATTATTGACTTGGT 59.550 33.333 0.00 0.00 0.00 3.67
112 113 7.597386 AGCTTTGAGAAATTATTGACTTGGTC 58.403 34.615 0.00 0.00 0.00 4.02
113 114 7.231317 AGCTTTGAGAAATTATTGACTTGGTCA 59.769 33.333 0.00 0.00 41.09 4.02
122 123 2.649531 TGACTTGGTCAAAATCGGGT 57.350 45.000 0.00 0.00 39.78 5.28
123 124 2.226330 TGACTTGGTCAAAATCGGGTG 58.774 47.619 0.00 0.00 39.78 4.61
124 125 2.158740 TGACTTGGTCAAAATCGGGTGA 60.159 45.455 0.00 0.00 39.78 4.02
125 126 2.225727 GACTTGGTCAAAATCGGGTGAC 59.774 50.000 0.00 0.00 42.83 3.67
157 158 4.852134 TTGGACACCTCAATTGATTGTG 57.148 40.909 25.27 25.27 38.84 3.33
158 159 4.097551 TGGACACCTCAATTGATTGTGA 57.902 40.909 30.09 15.05 38.84 3.58
159 160 4.074259 TGGACACCTCAATTGATTGTGAG 58.926 43.478 30.09 12.38 40.84 3.51
168 169 7.515957 CTCAATTGATTGTGAGGCATTTTAC 57.484 36.000 8.96 0.00 38.08 2.01
169 170 6.397272 TCAATTGATTGTGAGGCATTTTACC 58.603 36.000 3.38 0.00 38.84 2.85
170 171 4.799564 TTGATTGTGAGGCATTTTACCC 57.200 40.909 0.00 0.00 0.00 3.69
171 172 3.096092 TGATTGTGAGGCATTTTACCCC 58.904 45.455 0.00 0.00 0.00 4.95
172 173 2.990740 TTGTGAGGCATTTTACCCCT 57.009 45.000 0.00 0.00 0.00 4.79
173 174 4.017958 TGATTGTGAGGCATTTTACCCCTA 60.018 41.667 0.00 0.00 0.00 3.53
174 175 3.644966 TGTGAGGCATTTTACCCCTAG 57.355 47.619 0.00 0.00 0.00 3.02
175 176 2.241176 TGTGAGGCATTTTACCCCTAGG 59.759 50.000 0.06 0.06 40.04 3.02
192 193 4.647399 CCCTAGGGAGCTTAGTGATATAGC 59.353 50.000 24.99 0.00 37.50 2.97
193 194 5.265191 CCTAGGGAGCTTAGTGATATAGCA 58.735 45.833 0.00 0.00 37.37 3.49
194 195 5.359576 CCTAGGGAGCTTAGTGATATAGCAG 59.640 48.000 0.00 0.00 37.37 4.24
201 202 7.659390 GGAGCTTAGTGATATAGCAGATGTTTT 59.341 37.037 0.00 0.00 37.37 2.43
317 632 9.699410 AAATGATGGTCAATATTACAGGAAAGA 57.301 29.630 0.00 0.00 0.00 2.52
347 662 0.588252 ATTAGCCGCGCTATGCAAAG 59.412 50.000 5.56 0.00 46.97 2.77
367 688 6.683286 GCAAAGCTTAAGTCTAGTTTTATCGC 59.317 38.462 0.00 0.00 0.00 4.58
479 801 1.838345 CAATGTACGTACGCTCACGAG 59.162 52.381 20.18 4.91 44.69 4.18
513 835 1.304381 GGCATTTCCCTCTGTGGCA 60.304 57.895 0.00 0.00 37.14 4.92
580 902 1.554160 AGAGAACATGGGAGCACAGAG 59.446 52.381 0.00 0.00 0.00 3.35
638 960 5.472137 ACGCTAGTTAATGCAAAAAGGAAGA 59.528 36.000 0.00 0.00 0.00 2.87
639 961 6.024049 CGCTAGTTAATGCAAAAAGGAAGAG 58.976 40.000 0.00 0.00 0.00 2.85
640 962 6.325596 GCTAGTTAATGCAAAAAGGAAGAGG 58.674 40.000 0.00 0.00 0.00 3.69
641 963 6.151144 GCTAGTTAATGCAAAAAGGAAGAGGA 59.849 38.462 0.00 0.00 0.00 3.71
642 964 6.976934 AGTTAATGCAAAAAGGAAGAGGAA 57.023 33.333 0.00 0.00 0.00 3.36
643 965 7.360113 AGTTAATGCAAAAAGGAAGAGGAAA 57.640 32.000 0.00 0.00 0.00 3.13
644 966 7.791029 AGTTAATGCAAAAAGGAAGAGGAAAA 58.209 30.769 0.00 0.00 0.00 2.29
645 967 8.264347 AGTTAATGCAAAAAGGAAGAGGAAAAA 58.736 29.630 0.00 0.00 0.00 1.94
766 1088 0.660488 TGCACACAAAAAGCGATCGT 59.340 45.000 17.81 0.26 0.00 3.73
768 1090 2.288186 TGCACACAAAAAGCGATCGTTA 59.712 40.909 17.81 0.00 0.00 3.18
875 1198 1.429463 GCCGCCTCGTCCTATAAATG 58.571 55.000 0.00 0.00 0.00 2.32
878 1201 1.270094 CGCCTCGTCCTATAAATGCCA 60.270 52.381 0.00 0.00 0.00 4.92
894 1218 3.937778 TGCCATGATCCATGAAGAGAA 57.062 42.857 8.38 0.00 43.81 2.87
895 1219 3.816994 TGCCATGATCCATGAAGAGAAG 58.183 45.455 8.38 0.00 43.81 2.85
898 1222 4.399219 CCATGATCCATGAAGAGAAGCAT 58.601 43.478 8.38 0.00 43.81 3.79
899 1223 5.557866 CCATGATCCATGAAGAGAAGCATA 58.442 41.667 8.38 0.00 43.81 3.14
900 1224 5.411977 CCATGATCCATGAAGAGAAGCATAC 59.588 44.000 8.38 0.00 43.81 2.39
901 1225 5.619132 TGATCCATGAAGAGAAGCATACA 57.381 39.130 0.00 0.00 0.00 2.29
902 1226 5.993055 TGATCCATGAAGAGAAGCATACAA 58.007 37.500 0.00 0.00 0.00 2.41
903 1227 6.598503 TGATCCATGAAGAGAAGCATACAAT 58.401 36.000 0.00 0.00 0.00 2.71
930 1254 1.393539 CACACACCATCGATCGGAAAC 59.606 52.381 16.41 0.00 0.00 2.78
935 1259 1.139989 CCATCGATCGGAAACCATCG 58.860 55.000 16.41 12.61 42.72 3.84
958 1290 3.620488 TCAAAAGCCTCTCTTGTGTTGT 58.380 40.909 0.00 0.00 40.26 3.32
984 1316 2.048603 ACGTAGTGTACCGGCCTCC 61.049 63.158 0.00 0.00 42.51 4.30
1117 1449 4.569023 TCTATGCTGCCGCGGTCG 62.569 66.667 28.70 18.83 39.65 4.79
1292 1627 4.505217 ACGCGCCGACGTACGTAG 62.505 66.667 22.87 21.26 46.19 3.51
1400 1735 8.608844 TTGGAACGGTAAATTATTTGCATTTT 57.391 26.923 7.95 0.00 0.00 1.82
1415 1750 2.747446 GCATTTTGGTCGAAGGAGCTAA 59.253 45.455 0.00 0.00 41.26 3.09
1442 1777 1.630148 GCTGTGTGCTTAGAGGTACG 58.370 55.000 0.00 0.00 38.95 3.67
1443 1778 1.067776 GCTGTGTGCTTAGAGGTACGT 60.068 52.381 0.00 0.00 38.95 3.57
1444 1779 2.163010 GCTGTGTGCTTAGAGGTACGTA 59.837 50.000 0.00 0.00 38.95 3.57
1447 1782 4.578871 TGTGTGCTTAGAGGTACGTAGTA 58.421 43.478 0.00 0.00 45.11 1.82
1489 1833 5.106277 GCATCCTACGTACTCTACATATGCA 60.106 44.000 1.58 0.00 36.79 3.96
1523 1867 4.457834 AGTACTACGTACTGTCTACCGT 57.542 45.455 5.92 0.00 46.06 4.83
1524 1868 5.578005 AGTACTACGTACTGTCTACCGTA 57.422 43.478 5.92 0.00 46.06 4.02
1525 1869 5.341617 AGTACTACGTACTGTCTACCGTAC 58.658 45.833 5.92 7.51 46.06 3.67
1526 1870 3.522553 ACTACGTACTGTCTACCGTACC 58.477 50.000 8.62 0.00 34.05 3.34
1527 1871 2.472695 ACGTACTGTCTACCGTACCA 57.527 50.000 8.62 0.00 34.05 3.25
1528 1872 2.076863 ACGTACTGTCTACCGTACCAC 58.923 52.381 8.62 0.00 34.05 4.16
1529 1873 2.076100 CGTACTGTCTACCGTACCACA 58.924 52.381 8.62 0.00 34.05 4.17
1598 2189 2.353376 GCAAGTTGAAGCGCGCAA 60.353 55.556 35.10 16.79 0.00 4.85
1602 2193 2.518949 CAAGTTGAAGCGCGCAAATAT 58.481 42.857 35.10 13.61 0.00 1.28
1609 2200 7.974675 AGTTGAAGCGCGCAAATATATATAAT 58.025 30.769 35.10 3.94 0.00 1.28
1610 2201 9.093970 AGTTGAAGCGCGCAAATATATATAATA 57.906 29.630 35.10 0.00 0.00 0.98
1611 2202 9.144085 GTTGAAGCGCGCAAATATATATAATAC 57.856 33.333 35.10 8.31 0.00 1.89
1612 2203 8.642908 TGAAGCGCGCAAATATATATAATACT 57.357 30.769 35.10 2.14 0.00 2.12
1613 2204 8.752254 TGAAGCGCGCAAATATATATAATACTC 58.248 33.333 35.10 3.44 0.00 2.59
1614 2205 7.639162 AGCGCGCAAATATATATAATACTCC 57.361 36.000 35.10 0.00 0.00 3.85
1615 2206 7.434492 AGCGCGCAAATATATATAATACTCCT 58.566 34.615 35.10 0.85 0.00 3.69
1616 2207 7.595502 AGCGCGCAAATATATATAATACTCCTC 59.404 37.037 35.10 0.00 0.00 3.71
1617 2208 7.148787 GCGCGCAAATATATATAATACTCCTCC 60.149 40.741 29.10 0.00 0.00 4.30
1618 2209 7.060748 CGCGCAAATATATATAATACTCCTCCG 59.939 40.741 8.75 0.00 0.00 4.63
1619 2210 7.866393 GCGCAAATATATATAATACTCCTCCGT 59.134 37.037 0.30 0.00 0.00 4.69
1620 2211 9.395707 CGCAAATATATATAATACTCCTCCGTC 57.604 37.037 0.00 0.00 0.00 4.79
1628 2219 8.887264 ATATAATACTCCTCCGTCTCAGAATT 57.113 34.615 0.00 0.00 0.00 2.17
1629 2220 9.976776 ATATAATACTCCTCCGTCTCAGAATTA 57.023 33.333 0.00 0.00 0.00 1.40
1630 2221 6.642707 AATACTCCTCCGTCTCAGAATTAG 57.357 41.667 0.00 0.00 0.00 1.73
1631 2222 3.970842 ACTCCTCCGTCTCAGAATTAGT 58.029 45.455 0.00 0.00 0.00 2.24
1632 2223 3.697045 ACTCCTCCGTCTCAGAATTAGTG 59.303 47.826 0.00 0.00 0.00 2.74
1633 2224 3.697045 CTCCTCCGTCTCAGAATTAGTGT 59.303 47.826 0.00 0.00 0.00 3.55
1634 2225 3.695060 TCCTCCGTCTCAGAATTAGTGTC 59.305 47.826 0.00 0.00 0.00 3.67
1635 2226 3.697045 CCTCCGTCTCAGAATTAGTGTCT 59.303 47.826 0.00 0.00 0.00 3.41
1636 2227 4.201970 CCTCCGTCTCAGAATTAGTGTCTC 60.202 50.000 0.00 0.00 0.00 3.36
1637 2228 4.332828 TCCGTCTCAGAATTAGTGTCTCA 58.667 43.478 0.00 0.00 0.00 3.27
1638 2229 4.156190 TCCGTCTCAGAATTAGTGTCTCAC 59.844 45.833 0.00 0.00 34.10 3.51
1639 2230 4.416620 CGTCTCAGAATTAGTGTCTCACC 58.583 47.826 0.00 0.00 34.49 4.02
1640 2231 4.156922 CGTCTCAGAATTAGTGTCTCACCT 59.843 45.833 0.00 0.00 34.49 4.00
1641 2232 5.336055 CGTCTCAGAATTAGTGTCTCACCTT 60.336 44.000 0.00 0.00 34.49 3.50
1642 2233 6.127980 CGTCTCAGAATTAGTGTCTCACCTTA 60.128 42.308 0.00 0.00 34.49 2.69
1643 2234 7.030768 GTCTCAGAATTAGTGTCTCACCTTAC 58.969 42.308 0.00 0.00 34.49 2.34
1644 2235 6.719829 TCTCAGAATTAGTGTCTCACCTTACA 59.280 38.462 0.00 0.00 34.49 2.41
1645 2236 7.232737 TCTCAGAATTAGTGTCTCACCTTACAA 59.767 37.037 0.00 0.00 34.49 2.41
1646 2237 7.152645 TCAGAATTAGTGTCTCACCTTACAAC 58.847 38.462 0.00 0.00 34.49 3.32
1647 2238 7.015292 TCAGAATTAGTGTCTCACCTTACAACT 59.985 37.037 0.00 0.00 34.49 3.16
1648 2239 7.657761 CAGAATTAGTGTCTCACCTTACAACTT 59.342 37.037 0.00 0.00 34.49 2.66
1649 2240 8.211629 AGAATTAGTGTCTCACCTTACAACTTT 58.788 33.333 0.00 0.00 34.49 2.66
1650 2241 7.730364 ATTAGTGTCTCACCTTACAACTTTG 57.270 36.000 0.00 0.00 34.49 2.77
1651 2242 5.099042 AGTGTCTCACCTTACAACTTTGT 57.901 39.130 0.00 0.00 38.96 2.83
1652 2243 5.497474 AGTGTCTCACCTTACAACTTTGTT 58.503 37.500 0.00 0.00 37.57 2.83
1653 2244 6.646267 AGTGTCTCACCTTACAACTTTGTTA 58.354 36.000 0.00 0.00 37.57 2.41
1654 2245 7.280356 AGTGTCTCACCTTACAACTTTGTTAT 58.720 34.615 0.00 0.00 37.57 1.89
1655 2246 8.426489 AGTGTCTCACCTTACAACTTTGTTATA 58.574 33.333 0.00 0.00 37.57 0.98
1656 2247 8.709646 GTGTCTCACCTTACAACTTTGTTATAG 58.290 37.037 0.00 0.00 42.35 1.31
1657 2248 7.876068 TGTCTCACCTTACAACTTTGTTATAGG 59.124 37.037 0.00 7.74 42.35 2.57
1658 2249 8.092687 GTCTCACCTTACAACTTTGTTATAGGA 58.907 37.037 17.60 5.51 42.35 2.94
1659 2250 8.311836 TCTCACCTTACAACTTTGTTATAGGAG 58.688 37.037 17.60 12.67 42.35 3.69
1660 2251 8.197592 TCACCTTACAACTTTGTTATAGGAGA 57.802 34.615 17.60 14.07 42.35 3.71
1661 2252 8.092687 TCACCTTACAACTTTGTTATAGGAGAC 58.907 37.037 17.60 0.00 42.35 3.36
1662 2253 7.876068 CACCTTACAACTTTGTTATAGGAGACA 59.124 37.037 17.60 0.00 42.35 3.41
1663 2254 8.603304 ACCTTACAACTTTGTTATAGGAGACAT 58.397 33.333 17.60 1.16 42.35 3.06
1664 2255 9.449719 CCTTACAACTTTGTTATAGGAGACATT 57.550 33.333 0.00 0.00 42.35 2.71
1677 2268 9.991906 TTATAGGAGACATTTATTTTAGGACGG 57.008 33.333 0.00 0.00 0.00 4.79
1678 2269 6.555463 AGGAGACATTTATTTTAGGACGGA 57.445 37.500 0.00 0.00 0.00 4.69
1679 2270 6.954232 AGGAGACATTTATTTTAGGACGGAA 58.046 36.000 0.00 0.00 0.00 4.30
1680 2271 7.048512 AGGAGACATTTATTTTAGGACGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
1681 2272 7.046033 GGAGACATTTATTTTAGGACGGAAGA 58.954 38.462 0.00 0.00 0.00 2.87
1682 2273 7.551617 GGAGACATTTATTTTAGGACGGAAGAA 59.448 37.037 0.00 0.00 0.00 2.52
1683 2274 8.494016 AGACATTTATTTTAGGACGGAAGAAG 57.506 34.615 0.00 0.00 0.00 2.85
1709 2300 4.694760 ACTTATGTAGCTGGATCATGCA 57.305 40.909 10.96 0.00 0.00 3.96
1842 3084 1.952296 GATCATGGTGAACATCTGCCC 59.048 52.381 0.00 0.00 37.84 5.36
1847 3089 0.678048 GGTGAACATCTGCCCAGACC 60.678 60.000 0.00 0.00 40.75 3.85
1849 3091 0.842030 TGAACATCTGCCCAGACCCT 60.842 55.000 0.00 0.00 40.75 4.34
1850 3092 0.393537 GAACATCTGCCCAGACCCTG 60.394 60.000 0.00 0.00 40.75 4.45
1858 3616 1.172812 GCCCAGACCCTGTTGTGTTC 61.173 60.000 0.00 0.00 0.00 3.18
1939 3697 5.411977 GGAAGGTTCCTGCTAACTTAACTTC 59.588 44.000 1.16 0.00 44.11 3.01
1961 6504 6.000891 TCAGTGCAGTTAATTAAGTTGCAG 57.999 37.500 25.95 19.07 0.00 4.41
1984 6527 7.151308 CAGCTTTCCATAACTCCATAGACTAG 58.849 42.308 0.00 0.00 0.00 2.57
2020 6563 3.511934 ACCAGACCAGACAATCACTAGTC 59.488 47.826 0.00 0.00 35.02 2.59
2028 6571 5.447954 CCAGACAATCACTAGTCACGAGTAG 60.448 48.000 7.27 7.27 39.61 2.57
2029 6572 4.095185 AGACAATCACTAGTCACGAGTAGC 59.905 45.833 8.53 0.00 37.76 3.58
2147 6690 4.143333 CGAGGCACCTACCACGGG 62.143 72.222 0.00 0.00 39.72 5.28
2210 6753 2.542907 CGACTTTGCACCAGCGGTT 61.543 57.895 0.00 0.00 46.23 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.184789 AGGTCTTCAGTTTAAAAGTTGGTCA 58.815 36.000 0.00 0.00 0.00 4.02
1 2 6.317893 TGAGGTCTTCAGTTTAAAAGTTGGTC 59.682 38.462 0.00 0.00 0.00 4.02
12 13 9.750125 GTCAAAATTAATTGAGGTCTTCAGTTT 57.250 29.630 0.39 0.00 39.84 2.66
13 14 8.076178 CGTCAAAATTAATTGAGGTCTTCAGTT 58.924 33.333 0.39 0.00 39.84 3.16
14 15 7.444183 TCGTCAAAATTAATTGAGGTCTTCAGT 59.556 33.333 0.39 0.00 42.71 3.41
15 16 7.746475 GTCGTCAAAATTAATTGAGGTCTTCAG 59.254 37.037 0.39 0.00 42.71 3.02
16 17 7.444183 AGTCGTCAAAATTAATTGAGGTCTTCA 59.556 33.333 0.39 0.00 42.71 3.02
17 18 7.807680 AGTCGTCAAAATTAATTGAGGTCTTC 58.192 34.615 0.39 0.00 42.71 2.87
18 19 7.745620 AGTCGTCAAAATTAATTGAGGTCTT 57.254 32.000 0.39 0.00 42.71 3.01
19 20 7.745620 AAGTCGTCAAAATTAATTGAGGTCT 57.254 32.000 0.39 3.90 41.69 3.85
20 21 9.887406 TTTAAGTCGTCAAAATTAATTGAGGTC 57.113 29.630 0.39 1.76 42.71 3.85
70 71 9.288576 TCTCAAAGCTCTCATTCAATTCTTTTA 57.711 29.630 0.00 0.00 0.00 1.52
71 72 8.174733 TCTCAAAGCTCTCATTCAATTCTTTT 57.825 30.769 0.00 0.00 0.00 2.27
72 73 7.756395 TCTCAAAGCTCTCATTCAATTCTTT 57.244 32.000 0.00 0.00 0.00 2.52
73 74 7.756395 TTCTCAAAGCTCTCATTCAATTCTT 57.244 32.000 0.00 0.00 0.00 2.52
74 75 7.756395 TTTCTCAAAGCTCTCATTCAATTCT 57.244 32.000 0.00 0.00 0.00 2.40
75 76 8.983307 AATTTCTCAAAGCTCTCATTCAATTC 57.017 30.769 0.00 0.00 0.00 2.17
78 79 9.850628 CAATAATTTCTCAAAGCTCTCATTCAA 57.149 29.630 0.00 0.00 0.00 2.69
79 80 9.234827 TCAATAATTTCTCAAAGCTCTCATTCA 57.765 29.630 0.00 0.00 0.00 2.57
80 81 9.500864 GTCAATAATTTCTCAAAGCTCTCATTC 57.499 33.333 0.00 0.00 0.00 2.67
81 82 9.240734 AGTCAATAATTTCTCAAAGCTCTCATT 57.759 29.630 0.00 0.00 0.00 2.57
82 83 8.804912 AGTCAATAATTTCTCAAAGCTCTCAT 57.195 30.769 0.00 0.00 0.00 2.90
83 84 8.509690 CAAGTCAATAATTTCTCAAAGCTCTCA 58.490 33.333 0.00 0.00 0.00 3.27
84 85 7.967303 CCAAGTCAATAATTTCTCAAAGCTCTC 59.033 37.037 0.00 0.00 0.00 3.20
85 86 7.449704 ACCAAGTCAATAATTTCTCAAAGCTCT 59.550 33.333 0.00 0.00 0.00 4.09
86 87 7.597386 ACCAAGTCAATAATTTCTCAAAGCTC 58.403 34.615 0.00 0.00 0.00 4.09
87 88 7.231317 TGACCAAGTCAATAATTTCTCAAAGCT 59.769 33.333 0.00 0.00 39.78 3.74
88 89 7.370383 TGACCAAGTCAATAATTTCTCAAAGC 58.630 34.615 0.00 0.00 39.78 3.51
103 104 2.158740 TCACCCGATTTTGACCAAGTCA 60.159 45.455 0.00 0.00 41.09 3.41
104 105 2.225727 GTCACCCGATTTTGACCAAGTC 59.774 50.000 0.00 0.00 36.85 3.01
105 106 2.227194 GTCACCCGATTTTGACCAAGT 58.773 47.619 0.00 0.00 36.85 3.16
106 107 2.989422 GTCACCCGATTTTGACCAAG 57.011 50.000 0.00 0.00 36.85 3.61
110 111 2.167662 ATTGGGTCACCCGATTTTGAC 58.832 47.619 10.32 0.00 45.09 3.18
111 112 2.595750 ATTGGGTCACCCGATTTTGA 57.404 45.000 10.32 0.00 45.09 2.69
134 135 5.539574 TCACAATCAATTGAGGTGTCCAATT 59.460 36.000 28.21 9.99 42.88 2.32
135 136 5.078949 TCACAATCAATTGAGGTGTCCAAT 58.921 37.500 28.21 8.63 40.14 3.16
136 137 4.468713 TCACAATCAATTGAGGTGTCCAA 58.531 39.130 28.21 15.46 40.14 3.53
137 138 4.074259 CTCACAATCAATTGAGGTGTCCA 58.926 43.478 28.21 16.61 40.14 4.02
138 139 4.691860 CTCACAATCAATTGAGGTGTCC 57.308 45.455 28.21 0.00 40.14 4.02
144 145 6.532657 GGTAAAATGCCTCACAATCAATTGAG 59.467 38.462 14.54 3.71 40.14 3.02
145 146 6.397272 GGTAAAATGCCTCACAATCAATTGA 58.603 36.000 11.26 11.26 40.14 2.57
146 147 5.581874 GGGTAAAATGCCTCACAATCAATTG 59.418 40.000 0.00 0.00 43.26 2.32
147 148 5.338300 GGGGTAAAATGCCTCACAATCAATT 60.338 40.000 0.00 0.00 0.00 2.32
148 149 4.162131 GGGGTAAAATGCCTCACAATCAAT 59.838 41.667 0.00 0.00 0.00 2.57
149 150 3.513515 GGGGTAAAATGCCTCACAATCAA 59.486 43.478 0.00 0.00 0.00 2.57
150 151 3.096092 GGGGTAAAATGCCTCACAATCA 58.904 45.455 0.00 0.00 0.00 2.57
151 152 3.365472 AGGGGTAAAATGCCTCACAATC 58.635 45.455 0.00 0.00 0.00 2.67
152 153 3.473113 AGGGGTAAAATGCCTCACAAT 57.527 42.857 0.00 0.00 0.00 2.71
153 154 2.990740 AGGGGTAAAATGCCTCACAA 57.009 45.000 0.00 0.00 0.00 3.33
154 155 2.241176 CCTAGGGGTAAAATGCCTCACA 59.759 50.000 0.00 0.00 0.00 3.58
155 156 2.422945 CCCTAGGGGTAAAATGCCTCAC 60.423 54.545 21.44 0.00 38.25 3.51
156 157 1.850345 CCCTAGGGGTAAAATGCCTCA 59.150 52.381 21.44 0.00 38.25 3.86
157 158 2.106684 CTCCCTAGGGGTAAAATGCCTC 59.893 54.545 28.19 0.00 44.74 4.70
158 159 2.136026 CTCCCTAGGGGTAAAATGCCT 58.864 52.381 28.19 0.00 44.74 4.75
159 160 1.478837 GCTCCCTAGGGGTAAAATGCC 60.479 57.143 28.19 2.34 44.74 4.40
160 161 1.495148 AGCTCCCTAGGGGTAAAATGC 59.505 52.381 28.19 18.23 44.74 3.56
161 162 3.953542 AAGCTCCCTAGGGGTAAAATG 57.046 47.619 28.19 10.16 44.74 2.32
162 163 4.412528 CACTAAGCTCCCTAGGGGTAAAAT 59.587 45.833 28.19 11.80 44.74 1.82
163 164 3.778629 CACTAAGCTCCCTAGGGGTAAAA 59.221 47.826 28.19 7.00 44.74 1.52
164 165 3.013188 TCACTAAGCTCCCTAGGGGTAAA 59.987 47.826 28.19 7.41 44.74 2.01
165 166 2.588720 TCACTAAGCTCCCTAGGGGTAA 59.411 50.000 28.19 7.82 44.74 2.85
166 167 2.220470 TCACTAAGCTCCCTAGGGGTA 58.780 52.381 28.19 8.63 44.74 3.69
167 168 1.016415 TCACTAAGCTCCCTAGGGGT 58.984 55.000 28.19 13.54 44.74 4.95
168 169 2.407340 ATCACTAAGCTCCCTAGGGG 57.593 55.000 28.19 18.77 46.11 4.79
169 170 4.647399 GCTATATCACTAAGCTCCCTAGGG 59.353 50.000 23.22 23.22 33.40 3.53
170 171 5.265191 TGCTATATCACTAAGCTCCCTAGG 58.735 45.833 0.06 0.06 37.16 3.02
171 172 6.184068 TCTGCTATATCACTAAGCTCCCTAG 58.816 44.000 0.00 0.00 37.16 3.02
172 173 6.140968 TCTGCTATATCACTAAGCTCCCTA 57.859 41.667 0.00 0.00 37.16 3.53
173 174 5.004361 TCTGCTATATCACTAAGCTCCCT 57.996 43.478 0.00 0.00 37.16 4.20
174 175 5.186797 ACATCTGCTATATCACTAAGCTCCC 59.813 44.000 0.00 0.00 37.16 4.30
175 176 6.279513 ACATCTGCTATATCACTAAGCTCC 57.720 41.667 0.00 0.00 37.16 4.70
176 177 8.494347 CAAAACATCTGCTATATCACTAAGCTC 58.506 37.037 0.00 0.00 37.16 4.09
177 178 8.206867 TCAAAACATCTGCTATATCACTAAGCT 58.793 33.333 0.00 0.00 37.16 3.74
178 179 8.370493 TCAAAACATCTGCTATATCACTAAGC 57.630 34.615 0.00 0.00 36.77 3.09
182 183 8.969260 TGATTCAAAACATCTGCTATATCACT 57.031 30.769 0.00 0.00 0.00 3.41
187 188 9.230122 TGTCTTTGATTCAAAACATCTGCTATA 57.770 29.630 12.62 0.00 32.75 1.31
188 189 8.114331 TGTCTTTGATTCAAAACATCTGCTAT 57.886 30.769 12.62 0.00 32.75 2.97
189 190 7.509141 TGTCTTTGATTCAAAACATCTGCTA 57.491 32.000 12.62 0.00 32.75 3.49
190 191 6.395426 TGTCTTTGATTCAAAACATCTGCT 57.605 33.333 12.62 0.00 32.75 4.24
191 192 6.309737 GGATGTCTTTGATTCAAAACATCTGC 59.690 38.462 32.60 24.68 42.58 4.26
192 193 7.372714 TGGATGTCTTTGATTCAAAACATCTG 58.627 34.615 32.60 18.42 42.58 2.90
193 194 7.528996 TGGATGTCTTTGATTCAAAACATCT 57.471 32.000 32.60 20.19 42.58 2.90
194 195 8.653338 CAATGGATGTCTTTGATTCAAAACATC 58.347 33.333 30.25 30.25 42.45 3.06
201 202 7.528996 AGAAACAATGGATGTCTTTGATTCA 57.471 32.000 14.73 0.00 42.99 2.57
247 335 6.240549 AGGCTAGCTGTAGTGTATGAAAAT 57.759 37.500 15.72 0.00 0.00 1.82
294 382 9.342308 GATTCTTTCCTGTAATATTGACCATCA 57.658 33.333 0.00 0.00 0.00 3.07
317 632 2.146342 CGCGGCTAATCCATGAAGATT 58.854 47.619 0.00 0.00 39.73 2.40
327 642 0.586319 TTTGCATAGCGCGGCTAATC 59.414 50.000 19.48 6.82 44.62 1.75
347 662 6.040878 TGAGGCGATAAAACTAGACTTAAGC 58.959 40.000 1.29 4.27 0.00 3.09
439 761 0.685097 TGCCCAGAACTACACAGGTC 59.315 55.000 0.00 0.00 38.95 3.85
513 835 6.600822 CAGAATAATCCAATCCAAGTCAGTGT 59.399 38.462 0.00 0.00 0.00 3.55
580 902 0.458669 CCATGAGCCAATGTTCTGCC 59.541 55.000 0.00 0.00 0.00 4.85
612 934 6.995511 TCCTTTTTGCATTAACTAGCGTAT 57.004 33.333 0.00 0.00 0.00 3.06
642 964 1.534729 GCCACGATGGTCCTCTTTTT 58.465 50.000 0.00 0.00 40.46 1.94
643 965 0.322546 GGCCACGATGGTCCTCTTTT 60.323 55.000 0.00 0.00 40.46 2.27
644 966 1.299976 GGCCACGATGGTCCTCTTT 59.700 57.895 0.00 0.00 40.46 2.52
645 967 2.990479 GGCCACGATGGTCCTCTT 59.010 61.111 0.00 0.00 40.46 2.85
646 968 3.461773 CGGCCACGATGGTCCTCT 61.462 66.667 2.24 0.00 39.48 3.69
647 969 3.458163 TCGGCCACGATGGTCCTC 61.458 66.667 2.24 0.00 45.59 3.71
766 1088 4.223556 TGCGGATAATTGGTGGAACTAA 57.776 40.909 0.00 0.00 43.10 2.24
768 1090 2.752903 GTTGCGGATAATTGGTGGAACT 59.247 45.455 0.00 0.00 36.74 3.01
875 1198 2.553172 GCTTCTCTTCATGGATCATGGC 59.447 50.000 7.88 0.00 41.66 4.40
878 1201 6.183810 TGTATGCTTCTCTTCATGGATCAT 57.816 37.500 0.00 0.00 0.00 2.45
894 1218 5.300539 TGGTGTGTGTTTGTAATTGTATGCT 59.699 36.000 0.00 0.00 0.00 3.79
895 1219 5.524284 TGGTGTGTGTTTGTAATTGTATGC 58.476 37.500 0.00 0.00 0.00 3.14
898 1222 5.758784 TCGATGGTGTGTGTTTGTAATTGTA 59.241 36.000 0.00 0.00 0.00 2.41
899 1223 4.576873 TCGATGGTGTGTGTTTGTAATTGT 59.423 37.500 0.00 0.00 0.00 2.71
900 1224 5.102020 TCGATGGTGTGTGTTTGTAATTG 57.898 39.130 0.00 0.00 0.00 2.32
901 1225 5.390461 CGATCGATGGTGTGTGTTTGTAATT 60.390 40.000 10.26 0.00 0.00 1.40
902 1226 4.092821 CGATCGATGGTGTGTGTTTGTAAT 59.907 41.667 10.26 0.00 0.00 1.89
903 1227 3.430556 CGATCGATGGTGTGTGTTTGTAA 59.569 43.478 10.26 0.00 0.00 2.41
930 1254 3.191078 AGAGAGGCTTTTGATCGATGG 57.809 47.619 0.54 0.00 0.00 3.51
935 1259 4.276926 ACAACACAAGAGAGGCTTTTGATC 59.723 41.667 12.36 0.00 36.59 2.92
958 1290 0.518636 GGTACACTACGTGCTCGACA 59.481 55.000 16.04 1.21 36.98 4.35
979 1311 2.225242 TGGATGGATCTAGAGAGGAGGC 60.225 54.545 0.00 0.00 0.00 4.70
1033 1365 1.732259 CAGGCTAACGATCAACACCAC 59.268 52.381 0.00 0.00 0.00 4.16
1060 1392 3.426117 CTTCGGTCGGCGTGGCTAT 62.426 63.158 6.85 0.00 0.00 2.97
1092 1424 2.962253 GCAGCATAGACGACGCCC 60.962 66.667 0.00 0.00 0.00 6.13
1289 1624 4.005487 TCGATCTGCTCTACCTACCTAC 57.995 50.000 0.00 0.00 0.00 3.18
1290 1625 4.532916 AGATCGATCTGCTCTACCTACCTA 59.467 45.833 26.78 0.00 35.42 3.08
1291 1626 3.329520 AGATCGATCTGCTCTACCTACCT 59.670 47.826 26.78 0.00 35.42 3.08
1292 1627 3.681593 AGATCGATCTGCTCTACCTACC 58.318 50.000 26.78 0.00 35.42 3.18
1381 1716 6.528423 TCGACCAAAATGCAAATAATTTACCG 59.472 34.615 0.00 0.00 0.00 4.02
1400 1735 1.749634 GCTAGTTAGCTCCTTCGACCA 59.250 52.381 3.93 0.00 45.62 4.02
1442 1777 5.220529 GCACAAACGAATACCATGGTACTAC 60.221 44.000 26.87 18.10 33.01 2.73
1443 1778 4.871557 GCACAAACGAATACCATGGTACTA 59.128 41.667 26.87 7.62 33.01 1.82
1444 1779 3.687698 GCACAAACGAATACCATGGTACT 59.312 43.478 26.87 17.15 33.01 2.73
1447 1782 2.509569 TGCACAAACGAATACCATGGT 58.490 42.857 23.55 23.55 0.00 3.55
1448 1783 3.489059 GGATGCACAAACGAATACCATGG 60.489 47.826 11.19 11.19 0.00 3.66
1449 1784 3.378112 AGGATGCACAAACGAATACCATG 59.622 43.478 0.00 0.00 0.00 3.66
1450 1785 3.620488 AGGATGCACAAACGAATACCAT 58.380 40.909 0.00 0.00 0.00 3.55
1451 1786 3.066291 AGGATGCACAAACGAATACCA 57.934 42.857 0.00 0.00 0.00 3.25
1452 1787 3.000925 CGTAGGATGCACAAACGAATACC 59.999 47.826 6.83 0.00 35.66 2.73
1489 1833 2.912967 CGTAGTACTCACATTTTCGCGT 59.087 45.455 5.77 0.00 0.00 6.01
1522 1866 6.404513 GGAGTAGTGAACTAGTGATGTGGTAC 60.405 46.154 0.00 0.00 39.07 3.34
1523 1867 5.651139 GGAGTAGTGAACTAGTGATGTGGTA 59.349 44.000 0.00 0.00 39.07 3.25
1524 1868 4.463186 GGAGTAGTGAACTAGTGATGTGGT 59.537 45.833 0.00 0.00 39.07 4.16
1525 1869 4.462834 TGGAGTAGTGAACTAGTGATGTGG 59.537 45.833 0.00 0.00 39.07 4.17
1526 1870 5.644977 TGGAGTAGTGAACTAGTGATGTG 57.355 43.478 0.00 0.00 39.07 3.21
1527 1871 6.404844 CGATTGGAGTAGTGAACTAGTGATGT 60.405 42.308 0.00 0.00 39.07 3.06
1528 1872 5.974158 CGATTGGAGTAGTGAACTAGTGATG 59.026 44.000 0.00 0.00 39.07 3.07
1529 1873 5.886474 TCGATTGGAGTAGTGAACTAGTGAT 59.114 40.000 0.00 0.00 39.07 3.06
1602 2193 9.976776 AATTCTGAGACGGAGGAGTATTATATA 57.023 33.333 0.00 0.00 0.00 0.86
1609 2200 4.882427 CACTAATTCTGAGACGGAGGAGTA 59.118 45.833 0.00 0.00 0.00 2.59
1610 2201 3.697045 CACTAATTCTGAGACGGAGGAGT 59.303 47.826 0.00 0.00 0.00 3.85
1611 2202 3.697045 ACACTAATTCTGAGACGGAGGAG 59.303 47.826 0.00 0.00 0.00 3.69
1612 2203 3.695060 GACACTAATTCTGAGACGGAGGA 59.305 47.826 0.00 0.00 0.00 3.71
1613 2204 3.697045 AGACACTAATTCTGAGACGGAGG 59.303 47.826 0.00 0.00 0.00 4.30
1614 2205 4.396478 TGAGACACTAATTCTGAGACGGAG 59.604 45.833 0.00 0.00 0.00 4.63
1615 2206 4.156190 GTGAGACACTAATTCTGAGACGGA 59.844 45.833 0.00 0.00 0.00 4.69
1616 2207 4.416620 GTGAGACACTAATTCTGAGACGG 58.583 47.826 0.00 0.00 0.00 4.79
1617 2208 4.156922 AGGTGAGACACTAATTCTGAGACG 59.843 45.833 0.00 0.00 34.40 4.18
1618 2209 5.652994 AGGTGAGACACTAATTCTGAGAC 57.347 43.478 0.00 0.00 34.40 3.36
1619 2210 6.719829 TGTAAGGTGAGACACTAATTCTGAGA 59.280 38.462 0.00 0.00 34.40 3.27
1620 2211 6.925211 TGTAAGGTGAGACACTAATTCTGAG 58.075 40.000 0.00 0.00 34.40 3.35
1621 2212 6.911250 TGTAAGGTGAGACACTAATTCTGA 57.089 37.500 0.00 0.00 34.40 3.27
1622 2213 7.155328 AGTTGTAAGGTGAGACACTAATTCTG 58.845 38.462 0.00 0.00 34.40 3.02
1623 2214 7.304497 AGTTGTAAGGTGAGACACTAATTCT 57.696 36.000 0.00 0.00 34.40 2.40
1624 2215 7.964604 AAGTTGTAAGGTGAGACACTAATTC 57.035 36.000 0.00 0.00 34.40 2.17
1625 2216 7.773690 ACAAAGTTGTAAGGTGAGACACTAATT 59.226 33.333 0.00 0.00 40.16 1.40
1626 2217 7.280356 ACAAAGTTGTAAGGTGAGACACTAAT 58.720 34.615 0.00 0.00 40.16 1.73
1627 2218 6.646267 ACAAAGTTGTAAGGTGAGACACTAA 58.354 36.000 0.00 0.00 40.16 2.24
1628 2219 6.229936 ACAAAGTTGTAAGGTGAGACACTA 57.770 37.500 0.00 0.00 40.16 2.74
1629 2220 5.099042 ACAAAGTTGTAAGGTGAGACACT 57.901 39.130 0.00 0.00 40.16 3.55
1630 2221 5.813080 AACAAAGTTGTAAGGTGAGACAC 57.187 39.130 0.00 0.00 41.31 3.67
1631 2222 7.876068 CCTATAACAAAGTTGTAAGGTGAGACA 59.124 37.037 0.00 0.00 41.31 3.41
1632 2223 8.092687 TCCTATAACAAAGTTGTAAGGTGAGAC 58.907 37.037 14.79 0.00 41.31 3.36
1633 2224 8.197592 TCCTATAACAAAGTTGTAAGGTGAGA 57.802 34.615 14.79 0.39 41.31 3.27
1634 2225 8.311836 TCTCCTATAACAAAGTTGTAAGGTGAG 58.688 37.037 14.79 10.77 41.31 3.51
1635 2226 8.092687 GTCTCCTATAACAAAGTTGTAAGGTGA 58.907 37.037 14.79 14.67 41.31 4.02
1636 2227 7.876068 TGTCTCCTATAACAAAGTTGTAAGGTG 59.124 37.037 14.79 13.32 41.31 4.00
1637 2228 7.970102 TGTCTCCTATAACAAAGTTGTAAGGT 58.030 34.615 14.79 0.00 41.31 3.50
1638 2229 9.449719 AATGTCTCCTATAACAAAGTTGTAAGG 57.550 33.333 11.31 11.31 41.31 2.69
1651 2242 9.991906 CCGTCCTAAAATAAATGTCTCCTATAA 57.008 33.333 0.00 0.00 0.00 0.98
1652 2243 9.370930 TCCGTCCTAAAATAAATGTCTCCTATA 57.629 33.333 0.00 0.00 0.00 1.31
1653 2244 8.258850 TCCGTCCTAAAATAAATGTCTCCTAT 57.741 34.615 0.00 0.00 0.00 2.57
1654 2245 7.664552 TCCGTCCTAAAATAAATGTCTCCTA 57.335 36.000 0.00 0.00 0.00 2.94
1655 2246 6.555463 TCCGTCCTAAAATAAATGTCTCCT 57.445 37.500 0.00 0.00 0.00 3.69
1656 2247 7.046033 TCTTCCGTCCTAAAATAAATGTCTCC 58.954 38.462 0.00 0.00 0.00 3.71
1657 2248 8.488651 TTCTTCCGTCCTAAAATAAATGTCTC 57.511 34.615 0.00 0.00 0.00 3.36
1658 2249 8.101419 ACTTCTTCCGTCCTAAAATAAATGTCT 58.899 33.333 0.00 0.00 0.00 3.41
1659 2250 8.265165 ACTTCTTCCGTCCTAAAATAAATGTC 57.735 34.615 0.00 0.00 0.00 3.06
1660 2251 9.729281 TTACTTCTTCCGTCCTAAAATAAATGT 57.271 29.630 0.00 0.00 0.00 2.71
1669 2260 9.193806 ACATAAGTATTACTTCTTCCGTCCTAA 57.806 33.333 12.26 0.00 39.51 2.69
1670 2261 8.757982 ACATAAGTATTACTTCTTCCGTCCTA 57.242 34.615 12.26 0.00 39.51 2.94
1671 2262 7.657023 ACATAAGTATTACTTCTTCCGTCCT 57.343 36.000 12.26 0.00 39.51 3.85
1672 2263 7.594386 GCTACATAAGTATTACTTCTTCCGTCC 59.406 40.741 12.26 0.00 39.51 4.79
1673 2264 8.351461 AGCTACATAAGTATTACTTCTTCCGTC 58.649 37.037 12.26 0.00 39.51 4.79
1674 2265 8.136165 CAGCTACATAAGTATTACTTCTTCCGT 58.864 37.037 12.26 6.85 39.51 4.69
1675 2266 7.595502 CCAGCTACATAAGTATTACTTCTTCCG 59.404 40.741 12.26 2.46 39.51 4.30
1676 2267 8.639761 TCCAGCTACATAAGTATTACTTCTTCC 58.360 37.037 12.26 0.00 39.51 3.46
1679 2270 9.368416 TGATCCAGCTACATAAGTATTACTTCT 57.632 33.333 12.26 0.61 39.51 2.85
1681 2272 9.935241 CATGATCCAGCTACATAAGTATTACTT 57.065 33.333 13.36 13.36 41.97 2.24
1682 2273 8.037758 GCATGATCCAGCTACATAAGTATTACT 58.962 37.037 0.00 0.00 30.46 2.24
1683 2274 7.819415 TGCATGATCCAGCTACATAAGTATTAC 59.181 37.037 0.00 0.00 30.46 1.89
1692 2283 3.782656 TCATGCATGATCCAGCTACAT 57.217 42.857 25.42 0.00 0.00 2.29
1805 3047 3.744719 CGCTCGAGTGGAACCCGA 61.745 66.667 18.36 0.00 37.80 5.14
1842 3084 1.217882 GTCGAACACAACAGGGTCTG 58.782 55.000 0.00 0.00 37.52 3.51
1847 3089 1.877637 TGGATGTCGAACACAACAGG 58.122 50.000 0.00 0.00 38.97 4.00
1849 3091 5.618863 GCAATAATGGATGTCGAACACAACA 60.619 40.000 0.00 0.00 38.97 3.33
1850 3092 4.793216 GCAATAATGGATGTCGAACACAAC 59.207 41.667 0.00 0.00 38.97 3.32
1858 3616 3.065786 ACTGCAAGCAATAATGGATGTCG 59.934 43.478 0.00 0.00 37.60 4.35
1939 3697 4.618489 GCTGCAACTTAATTAACTGCACTG 59.382 41.667 19.37 14.37 38.06 3.66
1961 6504 6.267928 TCCTAGTCTATGGAGTTATGGAAAGC 59.732 42.308 0.00 0.00 0.00 3.51
2020 6563 1.860399 GCACTGATACGGCTACTCGTG 60.860 57.143 0.00 0.00 43.70 4.35
2029 6572 1.657487 CTACGGCGCACTGATACGG 60.657 63.158 10.83 0.00 0.00 4.02
2100 6643 2.341543 CTCACCTGCAGTGCTCGT 59.658 61.111 17.60 9.23 46.81 4.18
2109 6652 1.103803 TCTCGATACACCTCACCTGC 58.896 55.000 0.00 0.00 0.00 4.85
2147 6690 1.078143 ATCTCCCTTGACGCCTTGC 60.078 57.895 0.00 0.00 0.00 4.01
2210 6753 3.334751 CACGCAACAAGCCGACGA 61.335 61.111 0.00 0.00 41.38 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.