Multiple sequence alignment - TraesCS3A01G292700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G292700 chr3A 100.000 7594 0 0 1 7594 523553708 523546115 0.000000e+00 14024
1 TraesCS3A01G292700 chr3A 94.059 303 18 0 152 454 746624084 746623782 1.930000e-125 460
2 TraesCS3A01G292700 chr3B 96.298 7050 173 46 451 7457 528146067 528139063 0.000000e+00 11492
3 TraesCS3A01G292700 chr3B 95.172 145 4 2 7451 7593 528139037 528138894 7.670000e-55 226
4 TraesCS3A01G292700 chr3B 93.056 72 3 2 1 72 744977132 744977063 3.750000e-18 104
5 TraesCS3A01G292700 chr3D 98.154 6229 85 9 761 6986 402692190 402685989 0.000000e+00 10839
6 TraesCS3A01G292700 chr3D 93.865 489 23 4 6970 7457 402685667 402685185 0.000000e+00 730
7 TraesCS3A01G292700 chr3D 93.312 314 14 3 451 761 402692539 402692230 2.500000e-124 457
8 TraesCS3A01G292700 chr3D 96.377 138 5 0 7457 7594 402685155 402685018 2.130000e-55 228
9 TraesCS3A01G292700 chr6A 97.306 297 8 0 154 450 98219406 98219702 8.790000e-139 505
10 TraesCS3A01G292700 chr4A 97.306 297 8 0 154 450 617237360 617237064 8.790000e-139 505
11 TraesCS3A01G292700 chr5A 94.966 298 14 1 153 450 572354157 572353861 4.150000e-127 466
12 TraesCS3A01G292700 chr1A 94.257 296 15 1 154 449 278370768 278371061 1.160000e-122 451
13 TraesCS3A01G292700 chr1A 95.385 65 3 0 1 65 591606558 591606494 3.750000e-18 104
14 TraesCS3A01G292700 chr6B 91.611 298 25 0 153 450 225313861 225313564 5.480000e-111 412
15 TraesCS3A01G292700 chr6B 88.591 298 31 2 154 450 676472278 676472573 7.250000e-95 359
16 TraesCS3A01G292700 chr5B 90.397 302 28 1 151 451 658381349 658381650 5.520000e-106 396
17 TraesCS3A01G292700 chr5B 95.588 68 3 0 1 68 398587655 398587722 8.060000e-20 110
18 TraesCS3A01G292700 chr2A 88.119 303 32 3 153 453 592747046 592746746 2.610000e-94 357
19 TraesCS3A01G292700 chr1B 98.438 64 1 0 1 64 342119244 342119181 6.230000e-21 113
20 TraesCS3A01G292700 chr2D 96.923 65 2 0 1 65 461381934 461381870 8.060000e-20 110
21 TraesCS3A01G292700 chr2D 95.588 68 2 1 1 68 559221248 559221314 2.900000e-19 108
22 TraesCS3A01G292700 chr7D 96.825 63 2 0 1 63 385395472 385395534 1.040000e-18 106
23 TraesCS3A01G292700 chr7B 96.825 63 2 0 1 63 30391796 30391858 1.040000e-18 106
24 TraesCS3A01G292700 chr4B 95.455 66 3 0 1 66 152543428 152543363 1.040000e-18 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G292700 chr3A 523546115 523553708 7593 True 14024.0 14024 100.000 1 7594 1 chr3A.!!$R1 7593
1 TraesCS3A01G292700 chr3B 528138894 528146067 7173 True 5859.0 11492 95.735 451 7593 2 chr3B.!!$R2 7142
2 TraesCS3A01G292700 chr3D 402685018 402692539 7521 True 3063.5 10839 95.427 451 7594 4 chr3D.!!$R1 7143

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 295 0.032952 GTGTGTTGGTCCTGTAGCGA 59.967 55.000 0.0 0.0 0.00 4.93 F
364 365 0.036388 ATGTTCATTGGACCGTCGCT 60.036 50.000 0.0 0.0 0.00 4.93 F
537 541 0.108585 TCCAATTGCGGGATAGGAGC 59.891 55.000 0.0 0.0 0.00 4.70 F
979 1031 0.247736 AGGAAACACTAGCCAGCGAG 59.752 55.000 0.0 0.0 0.00 5.03 F
1038 1095 1.165907 GCAAAGCAAAGCAAACCCCC 61.166 55.000 0.0 0.0 0.00 5.40 F
1802 1877 1.275856 GCCAATTTGAGGTTCATGCCA 59.724 47.619 0.0 0.0 0.00 4.92 F
1826 1901 2.121948 TGCCTCTGCTACATCTTCCAT 58.878 47.619 0.0 0.0 38.71 3.41 F
2291 2366 2.646175 CCGTGACATCCAGGTCCGT 61.646 63.158 0.0 0.0 36.97 4.69 F
4145 4220 2.170817 GAGGGAGGGAATGGTTAGTGAC 59.829 54.545 0.0 0.0 0.00 3.67 F
4745 4820 4.022589 CAGAACCATGCCATCATATTCACC 60.023 45.833 0.0 0.0 33.06 4.02 F
5111 5186 0.954452 CAGGTTTCAACTGCACCCTC 59.046 55.000 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 1681 0.105778 GAGGAGCTTCTTCCGGATGG 59.894 60.000 16.68 7.95 42.29 3.51 R
1982 2057 0.188342 AGTGTGGCTTGGTCCCATTT 59.812 50.000 0.00 0.00 34.34 2.32 R
2027 2102 2.093447 CCGGCTCCAGAAGTACTCATTT 60.093 50.000 0.00 0.00 0.00 2.32 R
2291 2366 2.618442 TGATGAACACTGACAGCACA 57.382 45.000 1.25 0.00 0.00 4.57 R
3047 3122 3.282021 GTGCTCCTCTGGCATCAAATTA 58.718 45.455 0.00 0.00 41.86 1.40 R
3662 3737 4.180057 CAAGGACATAGAGAGTCTGCAAC 58.820 47.826 0.00 0.00 36.29 4.17 R
4145 4220 2.566833 TCCCAGCCCAAATATCATCG 57.433 50.000 0.00 0.00 0.00 3.84 R
4469 4544 0.541392 TCTGGCAAGCGACCACATAT 59.459 50.000 0.00 0.00 32.49 1.78 R
5111 5186 0.808755 GGCTAACATTTCCACCACGG 59.191 55.000 0.00 0.00 0.00 4.94 R
6104 6179 1.003118 ACGGCAATACTTCTGCTTCCA 59.997 47.619 0.00 0.00 39.82 3.53 R
7261 7691 0.179073 CCGGATCACTGCCTAACTGG 60.179 60.000 0.00 0.00 39.35 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.538591 GGTCAAATTAACGACCTAGGGG 58.461 50.000 14.81 7.16 46.83 4.79
40 41 2.806198 GTACGCGCACGCCTTGTA 60.806 61.111 5.73 3.39 45.53 2.41
41 42 2.049341 TACGCGCACGCCTTGTAA 60.049 55.556 5.73 0.00 45.53 2.41
42 43 1.664017 TACGCGCACGCCTTGTAAA 60.664 52.632 5.73 0.00 45.53 2.01
43 44 1.888958 TACGCGCACGCCTTGTAAAC 61.889 55.000 5.73 0.00 45.53 2.01
44 45 2.943653 GCGCACGCCTTGTAAACT 59.056 55.556 0.30 0.00 34.56 2.66
45 46 1.440353 GCGCACGCCTTGTAAACTG 60.440 57.895 0.30 0.00 34.56 3.16
46 47 1.837538 GCGCACGCCTTGTAAACTGA 61.838 55.000 0.30 0.00 34.56 3.41
47 48 0.163788 CGCACGCCTTGTAAACTGAG 59.836 55.000 0.00 0.00 0.00 3.35
48 49 1.508632 GCACGCCTTGTAAACTGAGA 58.491 50.000 0.00 0.00 0.00 3.27
49 50 1.461127 GCACGCCTTGTAAACTGAGAG 59.539 52.381 0.00 0.00 0.00 3.20
50 51 2.866460 GCACGCCTTGTAAACTGAGAGA 60.866 50.000 0.00 0.00 0.00 3.10
51 52 2.989840 CACGCCTTGTAAACTGAGAGAG 59.010 50.000 0.00 0.00 0.00 3.20
52 53 2.891580 ACGCCTTGTAAACTGAGAGAGA 59.108 45.455 0.00 0.00 0.00 3.10
53 54 3.057174 ACGCCTTGTAAACTGAGAGAGAG 60.057 47.826 0.00 0.00 0.00 3.20
54 55 3.674682 CGCCTTGTAAACTGAGAGAGAGG 60.675 52.174 0.00 0.00 0.00 3.69
55 56 3.259625 GCCTTGTAAACTGAGAGAGAGGT 59.740 47.826 0.00 0.00 0.00 3.85
56 57 4.463186 GCCTTGTAAACTGAGAGAGAGGTA 59.537 45.833 0.00 0.00 0.00 3.08
57 58 5.393678 GCCTTGTAAACTGAGAGAGAGGTAG 60.394 48.000 0.00 0.00 0.00 3.18
58 59 5.712917 CCTTGTAAACTGAGAGAGAGGTAGT 59.287 44.000 0.00 0.00 0.00 2.73
59 60 6.885376 CCTTGTAAACTGAGAGAGAGGTAGTA 59.115 42.308 0.00 0.00 0.00 1.82
60 61 7.148205 CCTTGTAAACTGAGAGAGAGGTAGTAC 60.148 44.444 0.00 0.00 0.00 2.73
61 62 7.018487 TGTAAACTGAGAGAGAGGTAGTACT 57.982 40.000 0.00 0.00 0.00 2.73
62 63 8.143673 TGTAAACTGAGAGAGAGGTAGTACTA 57.856 38.462 0.00 0.00 0.00 1.82
63 64 8.770322 TGTAAACTGAGAGAGAGGTAGTACTAT 58.230 37.037 5.75 0.00 0.00 2.12
64 65 9.617523 GTAAACTGAGAGAGAGGTAGTACTATT 57.382 37.037 5.75 0.00 0.00 1.73
65 66 8.741603 AAACTGAGAGAGAGGTAGTACTATTC 57.258 38.462 5.75 7.47 0.00 1.75
66 67 7.685849 ACTGAGAGAGAGGTAGTACTATTCT 57.314 40.000 15.74 15.74 0.00 2.40
67 68 8.097791 ACTGAGAGAGAGGTAGTACTATTCTT 57.902 38.462 16.48 9.69 0.00 2.52
68 69 9.216148 ACTGAGAGAGAGGTAGTACTATTCTTA 57.784 37.037 16.48 6.58 0.00 2.10
94 95 9.967346 AAGAAATGAATGAGATATTGATGCAAG 57.033 29.630 0.00 0.00 0.00 4.01
95 96 8.082852 AGAAATGAATGAGATATTGATGCAAGC 58.917 33.333 0.00 0.00 0.00 4.01
96 97 7.526142 AATGAATGAGATATTGATGCAAGCT 57.474 32.000 0.00 0.00 0.00 3.74
97 98 6.313744 TGAATGAGATATTGATGCAAGCTG 57.686 37.500 0.00 0.00 0.00 4.24
98 99 5.240844 TGAATGAGATATTGATGCAAGCTGG 59.759 40.000 0.00 0.00 0.00 4.85
99 100 4.426736 TGAGATATTGATGCAAGCTGGA 57.573 40.909 0.00 0.00 0.00 3.86
100 101 4.386711 TGAGATATTGATGCAAGCTGGAG 58.613 43.478 0.00 0.00 0.00 3.86
101 102 3.752222 GAGATATTGATGCAAGCTGGAGG 59.248 47.826 0.00 0.00 0.00 4.30
102 103 3.137913 AGATATTGATGCAAGCTGGAGGT 59.862 43.478 0.00 0.00 0.00 3.85
103 104 2.226962 ATTGATGCAAGCTGGAGGTT 57.773 45.000 0.00 0.00 35.98 3.50
104 105 1.999648 TTGATGCAAGCTGGAGGTTT 58.000 45.000 0.00 0.00 32.86 3.27
105 106 2.877097 TGATGCAAGCTGGAGGTTTA 57.123 45.000 0.00 0.00 32.86 2.01
106 107 3.153369 TGATGCAAGCTGGAGGTTTAA 57.847 42.857 0.00 0.00 32.86 1.52
107 108 3.084039 TGATGCAAGCTGGAGGTTTAAG 58.916 45.455 0.00 0.00 32.86 1.85
108 109 2.949177 TGCAAGCTGGAGGTTTAAGA 57.051 45.000 0.00 0.00 32.86 2.10
109 110 3.439857 TGCAAGCTGGAGGTTTAAGAT 57.560 42.857 0.00 0.00 32.86 2.40
110 111 3.084039 TGCAAGCTGGAGGTTTAAGATG 58.916 45.455 0.00 0.00 32.86 2.90
111 112 3.084786 GCAAGCTGGAGGTTTAAGATGT 58.915 45.455 0.00 0.00 32.86 3.06
112 113 3.507622 GCAAGCTGGAGGTTTAAGATGTT 59.492 43.478 0.00 0.00 32.86 2.71
113 114 4.616835 GCAAGCTGGAGGTTTAAGATGTTG 60.617 45.833 0.00 0.00 32.86 3.33
114 115 4.373156 AGCTGGAGGTTTAAGATGTTGT 57.627 40.909 0.00 0.00 0.00 3.32
115 116 4.074970 AGCTGGAGGTTTAAGATGTTGTG 58.925 43.478 0.00 0.00 0.00 3.33
116 117 3.366374 GCTGGAGGTTTAAGATGTTGTGC 60.366 47.826 0.00 0.00 0.00 4.57
117 118 3.153919 TGGAGGTTTAAGATGTTGTGCC 58.846 45.455 0.00 0.00 0.00 5.01
118 119 2.161609 GGAGGTTTAAGATGTTGTGCCG 59.838 50.000 0.00 0.00 0.00 5.69
119 120 1.539827 AGGTTTAAGATGTTGTGCCGC 59.460 47.619 0.00 0.00 0.00 6.53
120 121 1.539827 GGTTTAAGATGTTGTGCCGCT 59.460 47.619 0.00 0.00 0.00 5.52
121 122 2.030274 GGTTTAAGATGTTGTGCCGCTT 60.030 45.455 0.00 0.00 0.00 4.68
122 123 2.979813 GTTTAAGATGTTGTGCCGCTTG 59.020 45.455 0.00 0.00 0.00 4.01
123 124 0.521291 TAAGATGTTGTGCCGCTTGC 59.479 50.000 0.00 0.00 41.77 4.01
124 125 1.174712 AAGATGTTGTGCCGCTTGCT 61.175 50.000 0.00 0.00 42.00 3.91
125 126 1.443194 GATGTTGTGCCGCTTGCTG 60.443 57.895 0.00 0.00 42.00 4.41
126 127 2.133742 GATGTTGTGCCGCTTGCTGT 62.134 55.000 0.00 0.00 42.00 4.40
127 128 0.888736 ATGTTGTGCCGCTTGCTGTA 60.889 50.000 0.00 0.00 42.00 2.74
128 129 1.082104 GTTGTGCCGCTTGCTGTAC 60.082 57.895 0.00 0.00 42.00 2.90
129 130 2.603247 TTGTGCCGCTTGCTGTACG 61.603 57.895 0.00 0.00 42.00 3.67
130 131 4.445545 GTGCCGCTTGCTGTACGC 62.446 66.667 3.22 3.22 42.00 4.42
133 134 3.490759 CCGCTTGCTGTACGCCTG 61.491 66.667 7.13 2.36 38.05 4.85
134 135 2.738521 CGCTTGCTGTACGCCTGT 60.739 61.111 7.13 0.00 38.05 4.00
135 136 1.445410 CGCTTGCTGTACGCCTGTA 60.445 57.895 7.13 0.00 38.05 2.74
142 143 3.070576 GTACGCCTGTACCCCGGT 61.071 66.667 0.00 0.00 44.25 5.28
143 144 3.069946 TACGCCTGTACCCCGGTG 61.070 66.667 0.00 0.00 36.86 4.94
146 147 4.468689 GCCTGTACCCCGGTGCTC 62.469 72.222 0.00 0.00 0.00 4.26
147 148 4.143333 CCTGTACCCCGGTGCTCG 62.143 72.222 0.00 0.00 38.88 5.03
148 149 4.814294 CTGTACCCCGGTGCTCGC 62.814 72.222 0.00 0.00 37.59 5.03
160 161 4.838486 GCTCGCGGTCGGACTGAG 62.838 72.222 20.82 17.16 36.13 3.35
161 162 3.125573 CTCGCGGTCGGACTGAGA 61.126 66.667 20.82 20.36 32.42 3.27
162 163 2.437895 TCGCGGTCGGACTGAGAT 60.438 61.111 20.82 0.00 36.13 2.75
163 164 2.024871 CGCGGTCGGACTGAGATC 59.975 66.667 20.82 1.90 0.00 2.75
164 165 2.413765 GCGGTCGGACTGAGATCC 59.586 66.667 20.82 0.00 35.16 3.36
165 166 2.415608 GCGGTCGGACTGAGATCCA 61.416 63.158 20.82 0.00 38.87 3.41
174 175 3.473147 CTGAGATCCAGTGCCTTGG 57.527 57.895 3.72 0.00 38.10 3.61
175 176 0.747283 CTGAGATCCAGTGCCTTGGC 60.747 60.000 4.43 4.43 38.16 4.52
176 177 1.300963 GAGATCCAGTGCCTTGGCA 59.699 57.895 10.65 10.65 38.16 4.92
177 178 1.001641 AGATCCAGTGCCTTGGCAC 60.002 57.895 30.90 30.90 38.16 5.01
178 179 1.303561 GATCCAGTGCCTTGGCACA 60.304 57.895 36.34 22.22 42.56 4.57
179 180 1.589716 GATCCAGTGCCTTGGCACAC 61.590 60.000 36.34 21.60 42.56 3.82
180 181 2.356173 ATCCAGTGCCTTGGCACACA 62.356 55.000 36.34 23.68 42.56 3.72
181 182 2.723746 CAGTGCCTTGGCACACAC 59.276 61.111 36.34 17.29 42.56 3.82
182 183 2.120282 CAGTGCCTTGGCACACACA 61.120 57.895 36.34 5.35 42.56 3.72
183 184 1.379710 AGTGCCTTGGCACACACAA 60.380 52.632 36.34 4.64 42.56 3.33
184 185 1.066257 GTGCCTTGGCACACACAAG 59.934 57.895 32.37 0.00 43.73 3.16
187 188 3.524014 CTTGGCACACACAAGGCA 58.476 55.556 0.00 0.00 41.16 4.75
188 189 1.066257 CTTGGCACACACAAGGCAC 59.934 57.895 0.00 0.00 41.16 5.01
189 190 2.666715 CTTGGCACACACAAGGCACG 62.667 60.000 0.00 0.00 41.16 5.34
190 191 3.964875 GGCACACACAAGGCACGG 61.965 66.667 0.00 0.00 0.00 4.94
191 192 2.899838 GCACACACAAGGCACGGA 60.900 61.111 0.00 0.00 0.00 4.69
192 193 2.260869 GCACACACAAGGCACGGAT 61.261 57.895 0.00 0.00 0.00 4.18
193 194 1.575922 CACACACAAGGCACGGATG 59.424 57.895 0.00 0.00 0.00 3.51
194 195 0.884259 CACACACAAGGCACGGATGA 60.884 55.000 0.00 0.00 0.00 2.92
195 196 0.179032 ACACACAAGGCACGGATGAA 60.179 50.000 0.00 0.00 0.00 2.57
196 197 0.238289 CACACAAGGCACGGATGAAC 59.762 55.000 0.00 0.00 0.00 3.18
197 198 0.179032 ACACAAGGCACGGATGAACA 60.179 50.000 0.00 0.00 0.00 3.18
198 199 0.518636 CACAAGGCACGGATGAACAG 59.481 55.000 0.00 0.00 0.00 3.16
199 200 0.108585 ACAAGGCACGGATGAACAGT 59.891 50.000 0.00 0.00 0.00 3.55
200 201 1.346395 ACAAGGCACGGATGAACAGTA 59.654 47.619 0.00 0.00 0.00 2.74
201 202 2.027192 ACAAGGCACGGATGAACAGTAT 60.027 45.455 0.00 0.00 0.00 2.12
202 203 2.604046 AGGCACGGATGAACAGTATC 57.396 50.000 0.00 0.00 0.00 2.24
203 204 1.202417 AGGCACGGATGAACAGTATCG 60.202 52.381 0.00 0.00 0.00 2.92
204 205 1.470979 GGCACGGATGAACAGTATCGT 60.471 52.381 0.00 0.00 0.00 3.73
205 206 1.588404 GCACGGATGAACAGTATCGTG 59.412 52.381 8.95 8.95 34.88 4.35
206 207 1.588404 CACGGATGAACAGTATCGTGC 59.412 52.381 0.00 0.00 0.00 5.34
207 208 1.209128 CGGATGAACAGTATCGTGCC 58.791 55.000 0.00 0.00 0.00 5.01
208 209 1.202417 CGGATGAACAGTATCGTGCCT 60.202 52.381 0.00 0.00 0.00 4.75
209 210 2.738643 CGGATGAACAGTATCGTGCCTT 60.739 50.000 0.00 0.00 0.00 4.35
210 211 2.609459 GGATGAACAGTATCGTGCCTTG 59.391 50.000 0.00 0.00 0.00 3.61
211 212 3.521560 GATGAACAGTATCGTGCCTTGA 58.478 45.455 0.00 0.00 0.00 3.02
212 213 2.959516 TGAACAGTATCGTGCCTTGAG 58.040 47.619 0.00 0.00 0.00 3.02
213 214 1.661112 GAACAGTATCGTGCCTTGAGC 59.339 52.381 0.00 0.00 44.14 4.26
214 215 0.898320 ACAGTATCGTGCCTTGAGCT 59.102 50.000 0.00 0.00 44.23 4.09
215 216 1.276421 ACAGTATCGTGCCTTGAGCTT 59.724 47.619 0.00 0.00 44.23 3.74
216 217 2.289694 ACAGTATCGTGCCTTGAGCTTT 60.290 45.455 0.00 0.00 44.23 3.51
217 218 2.349886 CAGTATCGTGCCTTGAGCTTTC 59.650 50.000 0.00 0.00 44.23 2.62
218 219 2.028112 AGTATCGTGCCTTGAGCTTTCA 60.028 45.455 0.00 0.00 44.23 2.69
219 220 1.446907 ATCGTGCCTTGAGCTTTCAG 58.553 50.000 0.00 0.00 44.23 3.02
220 221 1.208614 CGTGCCTTGAGCTTTCAGC 59.791 57.895 0.00 0.00 44.23 4.26
221 222 1.583477 GTGCCTTGAGCTTTCAGCC 59.417 57.895 0.00 0.00 43.77 4.85
222 223 1.968017 TGCCTTGAGCTTTCAGCCG 60.968 57.895 0.00 0.00 43.77 5.52
223 224 1.968540 GCCTTGAGCTTTCAGCCGT 60.969 57.895 0.00 0.00 43.77 5.68
224 225 1.518903 GCCTTGAGCTTTCAGCCGTT 61.519 55.000 0.00 0.00 43.77 4.44
225 226 1.808411 CCTTGAGCTTTCAGCCGTTA 58.192 50.000 0.00 0.00 43.77 3.18
226 227 1.734465 CCTTGAGCTTTCAGCCGTTAG 59.266 52.381 0.00 0.00 43.77 2.34
227 228 2.612972 CCTTGAGCTTTCAGCCGTTAGA 60.613 50.000 0.00 0.00 43.77 2.10
228 229 3.265791 CTTGAGCTTTCAGCCGTTAGAT 58.734 45.455 0.00 0.00 43.77 1.98
229 230 2.893637 TGAGCTTTCAGCCGTTAGATC 58.106 47.619 0.00 0.00 43.77 2.75
230 231 1.855360 GAGCTTTCAGCCGTTAGATCG 59.145 52.381 0.00 0.00 43.77 3.69
243 244 5.391060 CGTTAGATCGGAAATCAAGGTTC 57.609 43.478 0.00 0.00 0.00 3.62
244 245 4.270325 CGTTAGATCGGAAATCAAGGTTCC 59.730 45.833 0.00 0.00 41.08 3.62
245 246 5.183228 GTTAGATCGGAAATCAAGGTTCCA 58.817 41.667 4.23 0.00 44.14 3.53
246 247 3.878778 AGATCGGAAATCAAGGTTCCAG 58.121 45.455 4.23 0.00 44.14 3.86
247 248 3.519510 AGATCGGAAATCAAGGTTCCAGA 59.480 43.478 4.23 2.99 44.14 3.86
248 249 4.164988 AGATCGGAAATCAAGGTTCCAGAT 59.835 41.667 4.23 7.00 44.14 2.90
249 250 4.301072 TCGGAAATCAAGGTTCCAGATT 57.699 40.909 4.23 4.51 44.14 2.40
250 251 4.662278 TCGGAAATCAAGGTTCCAGATTT 58.338 39.130 16.34 16.34 44.14 2.17
255 256 5.972107 AATCAAGGTTCCAGATTTCAGTG 57.028 39.130 4.51 0.00 0.00 3.66
256 257 4.705110 TCAAGGTTCCAGATTTCAGTGA 57.295 40.909 0.00 0.00 0.00 3.41
257 258 5.047566 TCAAGGTTCCAGATTTCAGTGAA 57.952 39.130 0.08 0.08 0.00 3.18
258 259 4.821805 TCAAGGTTCCAGATTTCAGTGAAC 59.178 41.667 4.68 0.00 35.68 3.18
259 260 4.437682 AGGTTCCAGATTTCAGTGAACA 57.562 40.909 4.68 0.00 37.61 3.18
260 261 4.392940 AGGTTCCAGATTTCAGTGAACAG 58.607 43.478 4.68 0.00 37.61 3.16
261 262 4.137543 GGTTCCAGATTTCAGTGAACAGT 58.862 43.478 4.68 0.00 37.61 3.55
262 263 5.071788 AGGTTCCAGATTTCAGTGAACAGTA 59.928 40.000 4.68 0.00 37.61 2.74
263 264 5.179555 GGTTCCAGATTTCAGTGAACAGTAC 59.820 44.000 4.68 0.00 37.61 2.73
264 265 4.894784 TCCAGATTTCAGTGAACAGTACC 58.105 43.478 4.68 0.00 0.00 3.34
265 266 4.003648 CCAGATTTCAGTGAACAGTACCC 58.996 47.826 4.68 0.00 0.00 3.69
266 267 4.003648 CAGATTTCAGTGAACAGTACCCC 58.996 47.826 4.68 0.00 0.00 4.95
267 268 2.536761 TTTCAGTGAACAGTACCCCG 57.463 50.000 4.68 0.00 0.00 5.73
268 269 0.034337 TTCAGTGAACAGTACCCCGC 59.966 55.000 0.08 0.00 0.00 6.13
269 270 1.736645 CAGTGAACAGTACCCCGCG 60.737 63.158 0.00 0.00 0.00 6.46
270 271 3.116531 GTGAACAGTACCCCGCGC 61.117 66.667 0.00 0.00 0.00 6.86
271 272 3.307906 TGAACAGTACCCCGCGCT 61.308 61.111 5.56 0.00 0.00 5.92
272 273 1.978080 TGAACAGTACCCCGCGCTA 60.978 57.895 5.56 0.00 0.00 4.26
273 274 1.517913 GAACAGTACCCCGCGCTAC 60.518 63.158 5.56 0.33 0.00 3.58
274 275 2.216750 GAACAGTACCCCGCGCTACA 62.217 60.000 5.56 0.00 0.00 2.74
275 276 2.104331 CAGTACCCCGCGCTACAG 59.896 66.667 5.56 0.00 0.00 2.74
276 277 2.362120 AGTACCCCGCGCTACAGT 60.362 61.111 5.56 0.00 0.00 3.55
277 278 2.202703 GTACCCCGCGCTACAGTG 60.203 66.667 5.56 0.00 0.00 3.66
278 279 2.677524 TACCCCGCGCTACAGTGT 60.678 61.111 5.56 0.00 0.00 3.55
279 280 2.997075 TACCCCGCGCTACAGTGTG 61.997 63.158 5.88 0.00 35.95 3.82
280 281 4.373116 CCCCGCGCTACAGTGTGT 62.373 66.667 5.88 0.00 34.50 3.72
281 282 2.357034 CCCGCGCTACAGTGTGTT 60.357 61.111 5.88 0.00 34.50 3.32
282 283 2.667318 CCCGCGCTACAGTGTGTTG 61.667 63.158 5.88 0.00 34.50 3.33
283 284 2.667318 CCGCGCTACAGTGTGTTGG 61.667 63.158 5.88 0.00 34.50 3.77
284 285 1.954146 CGCGCTACAGTGTGTTGGT 60.954 57.895 5.88 0.00 0.00 3.67
285 286 1.860078 GCGCTACAGTGTGTTGGTC 59.140 57.895 5.88 0.00 0.00 4.02
286 287 1.566018 GCGCTACAGTGTGTTGGTCC 61.566 60.000 5.88 0.00 0.00 4.46
287 288 0.033504 CGCTACAGTGTGTTGGTCCT 59.966 55.000 5.88 0.00 0.00 3.85
288 289 1.512926 GCTACAGTGTGTTGGTCCTG 58.487 55.000 5.88 0.00 0.00 3.86
289 290 1.202651 GCTACAGTGTGTTGGTCCTGT 60.203 52.381 5.88 0.00 40.92 4.00
290 291 2.036733 GCTACAGTGTGTTGGTCCTGTA 59.963 50.000 5.88 0.00 38.91 2.74
291 292 2.910688 ACAGTGTGTTGGTCCTGTAG 57.089 50.000 0.00 0.00 36.44 2.74
292 293 1.202651 ACAGTGTGTTGGTCCTGTAGC 60.203 52.381 0.00 0.00 36.44 3.58
293 294 0.033504 AGTGTGTTGGTCCTGTAGCG 59.966 55.000 0.00 0.00 0.00 4.26
294 295 0.032952 GTGTGTTGGTCCTGTAGCGA 59.967 55.000 0.00 0.00 0.00 4.93
295 296 0.973632 TGTGTTGGTCCTGTAGCGAT 59.026 50.000 0.00 0.00 0.00 4.58
296 297 1.346395 TGTGTTGGTCCTGTAGCGATT 59.654 47.619 0.00 0.00 0.00 3.34
297 298 2.563620 TGTGTTGGTCCTGTAGCGATTA 59.436 45.455 0.00 0.00 0.00 1.75
298 299 3.196901 TGTGTTGGTCCTGTAGCGATTAT 59.803 43.478 0.00 0.00 0.00 1.28
299 300 3.802685 GTGTTGGTCCTGTAGCGATTATC 59.197 47.826 0.00 0.00 0.00 1.75
300 301 3.181469 TGTTGGTCCTGTAGCGATTATCC 60.181 47.826 0.00 0.00 0.00 2.59
301 302 2.958818 TGGTCCTGTAGCGATTATCCT 58.041 47.619 0.00 0.00 0.00 3.24
302 303 2.891580 TGGTCCTGTAGCGATTATCCTC 59.108 50.000 0.00 0.00 0.00 3.71
303 304 3.158676 GGTCCTGTAGCGATTATCCTCT 58.841 50.000 0.00 0.00 0.00 3.69
304 305 4.202535 TGGTCCTGTAGCGATTATCCTCTA 60.203 45.833 0.00 0.00 0.00 2.43
305 306 4.396790 GGTCCTGTAGCGATTATCCTCTAG 59.603 50.000 0.00 0.00 0.00 2.43
306 307 4.011023 TCCTGTAGCGATTATCCTCTAGC 58.989 47.826 0.00 0.00 0.00 3.42
307 308 3.759086 CCTGTAGCGATTATCCTCTAGCA 59.241 47.826 0.00 0.00 0.00 3.49
308 309 4.142491 CCTGTAGCGATTATCCTCTAGCAG 60.142 50.000 0.00 0.00 0.00 4.24
309 310 4.652822 TGTAGCGATTATCCTCTAGCAGA 58.347 43.478 0.00 0.00 0.00 4.26
310 311 4.456222 TGTAGCGATTATCCTCTAGCAGAC 59.544 45.833 0.00 0.00 0.00 3.51
311 312 3.761897 AGCGATTATCCTCTAGCAGACT 58.238 45.455 0.00 0.00 0.00 3.24
312 313 4.148838 AGCGATTATCCTCTAGCAGACTT 58.851 43.478 0.00 0.00 0.00 3.01
313 314 4.217550 AGCGATTATCCTCTAGCAGACTTC 59.782 45.833 0.00 0.00 0.00 3.01
314 315 4.617298 GCGATTATCCTCTAGCAGACTTCC 60.617 50.000 0.00 0.00 0.00 3.46
315 316 4.764823 CGATTATCCTCTAGCAGACTTCCT 59.235 45.833 0.00 0.00 0.00 3.36
316 317 5.335583 CGATTATCCTCTAGCAGACTTCCTG 60.336 48.000 0.00 0.00 45.67 3.86
317 318 2.909504 TCCTCTAGCAGACTTCCTGT 57.090 50.000 0.00 0.00 44.71 4.00
318 319 4.528076 ATCCTCTAGCAGACTTCCTGTA 57.472 45.455 0.00 0.00 44.71 2.74
319 320 3.892284 TCCTCTAGCAGACTTCCTGTAG 58.108 50.000 0.00 0.00 44.71 2.74
320 321 2.360801 CCTCTAGCAGACTTCCTGTAGC 59.639 54.545 0.00 0.00 44.71 3.58
321 322 2.017782 TCTAGCAGACTTCCTGTAGCG 58.982 52.381 0.00 0.00 44.71 4.26
322 323 2.017782 CTAGCAGACTTCCTGTAGCGA 58.982 52.381 0.00 0.00 44.71 4.93
323 324 1.479709 AGCAGACTTCCTGTAGCGAT 58.520 50.000 0.00 0.00 44.71 4.58
324 325 1.135915 AGCAGACTTCCTGTAGCGATG 59.864 52.381 0.00 0.00 44.71 3.84
325 326 1.565305 CAGACTTCCTGTAGCGATGC 58.435 55.000 0.00 0.00 38.10 3.91
326 327 1.134995 CAGACTTCCTGTAGCGATGCA 60.135 52.381 0.00 0.00 38.10 3.96
327 328 1.134965 AGACTTCCTGTAGCGATGCAC 60.135 52.381 0.00 0.00 0.00 4.57
328 329 0.898320 ACTTCCTGTAGCGATGCACT 59.102 50.000 0.00 0.00 0.00 4.40
329 330 1.284657 CTTCCTGTAGCGATGCACTG 58.715 55.000 0.00 0.00 0.00 3.66
330 331 0.608130 TTCCTGTAGCGATGCACTGT 59.392 50.000 0.00 0.00 0.00 3.55
331 332 1.470051 TCCTGTAGCGATGCACTGTA 58.530 50.000 0.00 0.00 0.00 2.74
332 333 1.405463 TCCTGTAGCGATGCACTGTAG 59.595 52.381 0.00 0.00 0.00 2.74
333 334 1.203928 CTGTAGCGATGCACTGTAGC 58.796 55.000 0.00 0.00 0.00 3.58
334 335 0.525455 TGTAGCGATGCACTGTAGCG 60.525 55.000 0.00 0.00 37.31 4.26
335 336 1.065764 TAGCGATGCACTGTAGCGG 59.934 57.895 6.90 0.00 37.31 5.52
336 337 1.663379 TAGCGATGCACTGTAGCGGT 61.663 55.000 13.72 13.72 37.31 5.68
337 338 2.802667 GCGATGCACTGTAGCGGTG 61.803 63.158 6.90 3.89 43.00 4.94
338 339 1.153842 CGATGCACTGTAGCGGTGA 60.154 57.895 11.79 0.00 42.79 4.02
339 340 1.413767 CGATGCACTGTAGCGGTGAC 61.414 60.000 11.79 4.44 42.79 3.67
340 341 0.108615 GATGCACTGTAGCGGTGACT 60.109 55.000 11.79 0.00 42.79 3.41
341 342 0.108615 ATGCACTGTAGCGGTGACTC 60.109 55.000 11.79 0.00 42.79 3.36
342 343 1.179174 TGCACTGTAGCGGTGACTCT 61.179 55.000 11.79 0.00 42.79 3.24
343 344 0.038159 GCACTGTAGCGGTGACTCTT 60.038 55.000 11.79 0.00 42.79 2.85
344 345 1.702886 CACTGTAGCGGTGACTCTTG 58.297 55.000 0.00 0.00 42.79 3.02
345 346 1.269723 CACTGTAGCGGTGACTCTTGA 59.730 52.381 0.00 0.00 42.79 3.02
346 347 2.094494 CACTGTAGCGGTGACTCTTGAT 60.094 50.000 0.00 0.00 42.79 2.57
347 348 2.094494 ACTGTAGCGGTGACTCTTGATG 60.094 50.000 0.00 0.00 0.00 3.07
348 349 1.893137 TGTAGCGGTGACTCTTGATGT 59.107 47.619 0.00 0.00 0.00 3.06
349 350 2.299013 TGTAGCGGTGACTCTTGATGTT 59.701 45.455 0.00 0.00 0.00 2.71
350 351 2.086054 AGCGGTGACTCTTGATGTTC 57.914 50.000 0.00 0.00 0.00 3.18
351 352 1.344438 AGCGGTGACTCTTGATGTTCA 59.656 47.619 0.00 0.00 0.00 3.18
352 353 2.027745 AGCGGTGACTCTTGATGTTCAT 60.028 45.455 0.00 0.00 0.00 2.57
353 354 2.744202 GCGGTGACTCTTGATGTTCATT 59.256 45.455 0.00 0.00 0.00 2.57
354 355 3.425359 GCGGTGACTCTTGATGTTCATTG 60.425 47.826 0.00 0.00 0.00 2.82
355 356 3.125829 CGGTGACTCTTGATGTTCATTGG 59.874 47.826 0.00 0.00 0.00 3.16
356 357 4.326826 GGTGACTCTTGATGTTCATTGGA 58.673 43.478 0.00 0.00 0.00 3.53
357 358 4.154918 GGTGACTCTTGATGTTCATTGGAC 59.845 45.833 0.00 0.00 0.00 4.02
358 359 4.154918 GTGACTCTTGATGTTCATTGGACC 59.845 45.833 0.00 0.00 0.00 4.46
359 360 3.338249 ACTCTTGATGTTCATTGGACCG 58.662 45.455 0.00 0.00 0.00 4.79
360 361 3.244561 ACTCTTGATGTTCATTGGACCGT 60.245 43.478 0.00 0.00 0.00 4.83
361 362 3.334691 TCTTGATGTTCATTGGACCGTC 58.665 45.455 0.00 0.00 0.00 4.79
362 363 1.720805 TGATGTTCATTGGACCGTCG 58.279 50.000 0.00 0.00 0.00 5.12
363 364 0.373716 GATGTTCATTGGACCGTCGC 59.626 55.000 0.00 0.00 0.00 5.19
364 365 0.036388 ATGTTCATTGGACCGTCGCT 60.036 50.000 0.00 0.00 0.00 4.93
365 366 0.250124 TGTTCATTGGACCGTCGCTT 60.250 50.000 0.00 0.00 0.00 4.68
366 367 0.165944 GTTCATTGGACCGTCGCTTG 59.834 55.000 0.00 0.00 0.00 4.01
367 368 0.250124 TTCATTGGACCGTCGCTTGT 60.250 50.000 0.00 0.00 0.00 3.16
368 369 0.604073 TCATTGGACCGTCGCTTGTA 59.396 50.000 0.00 0.00 0.00 2.41
369 370 0.999406 CATTGGACCGTCGCTTGTAG 59.001 55.000 0.00 0.00 0.00 2.74
370 371 0.892755 ATTGGACCGTCGCTTGTAGA 59.107 50.000 0.00 0.00 0.00 2.59
371 372 0.892755 TTGGACCGTCGCTTGTAGAT 59.107 50.000 0.00 0.00 0.00 1.98
372 373 0.454600 TGGACCGTCGCTTGTAGATC 59.545 55.000 0.00 0.00 0.00 2.75
373 374 0.248949 GGACCGTCGCTTGTAGATCC 60.249 60.000 0.00 0.00 0.00 3.36
374 375 0.454600 GACCGTCGCTTGTAGATCCA 59.545 55.000 0.00 0.00 0.00 3.41
375 376 0.892755 ACCGTCGCTTGTAGATCCAA 59.107 50.000 0.00 0.00 0.00 3.53
376 377 1.278238 CCGTCGCTTGTAGATCCAAC 58.722 55.000 0.00 0.00 0.00 3.77
377 378 0.914551 CGTCGCTTGTAGATCCAACG 59.085 55.000 0.00 0.00 0.00 4.10
378 379 1.731424 CGTCGCTTGTAGATCCAACGT 60.731 52.381 0.00 0.00 0.00 3.99
379 380 1.918609 GTCGCTTGTAGATCCAACGTC 59.081 52.381 0.00 0.00 0.00 4.34
380 381 1.135199 TCGCTTGTAGATCCAACGTCC 60.135 52.381 0.00 0.00 0.00 4.79
381 382 1.403647 CGCTTGTAGATCCAACGTCCA 60.404 52.381 0.00 0.00 0.00 4.02
382 383 2.695359 GCTTGTAGATCCAACGTCCAA 58.305 47.619 0.00 0.00 0.00 3.53
383 384 3.071479 GCTTGTAGATCCAACGTCCAAA 58.929 45.455 0.00 0.00 0.00 3.28
384 385 3.500680 GCTTGTAGATCCAACGTCCAAAA 59.499 43.478 0.00 0.00 0.00 2.44
385 386 4.378459 GCTTGTAGATCCAACGTCCAAAAG 60.378 45.833 0.00 0.00 0.00 2.27
386 387 4.610605 TGTAGATCCAACGTCCAAAAGA 57.389 40.909 0.00 0.00 0.00 2.52
387 388 5.160607 TGTAGATCCAACGTCCAAAAGAT 57.839 39.130 0.00 0.00 0.00 2.40
388 389 4.935205 TGTAGATCCAACGTCCAAAAGATG 59.065 41.667 0.00 0.00 37.53 2.90
389 390 2.749621 AGATCCAACGTCCAAAAGATGC 59.250 45.455 0.00 0.00 34.56 3.91
390 391 1.243902 TCCAACGTCCAAAAGATGCC 58.756 50.000 0.00 0.00 34.56 4.40
391 392 0.243636 CCAACGTCCAAAAGATGCCC 59.756 55.000 0.00 0.00 34.56 5.36
392 393 1.247567 CAACGTCCAAAAGATGCCCT 58.752 50.000 0.00 0.00 34.56 5.19
393 394 1.613437 CAACGTCCAAAAGATGCCCTT 59.387 47.619 0.00 0.00 34.56 3.95
394 395 2.817258 CAACGTCCAAAAGATGCCCTTA 59.183 45.455 0.00 0.00 34.56 2.69
395 396 3.149005 ACGTCCAAAAGATGCCCTTAA 57.851 42.857 0.00 0.00 34.56 1.85
396 397 3.081804 ACGTCCAAAAGATGCCCTTAAG 58.918 45.455 0.00 0.00 34.56 1.85
397 398 2.423538 CGTCCAAAAGATGCCCTTAAGG 59.576 50.000 15.14 15.14 34.00 2.69
398 399 3.431415 GTCCAAAAGATGCCCTTAAGGT 58.569 45.455 20.22 1.40 38.26 3.50
399 400 4.595986 GTCCAAAAGATGCCCTTAAGGTA 58.404 43.478 20.22 9.30 38.26 3.08
400 401 4.398358 GTCCAAAAGATGCCCTTAAGGTAC 59.602 45.833 20.22 12.22 38.26 3.34
401 402 3.377172 CCAAAAGATGCCCTTAAGGTACG 59.623 47.826 20.22 6.34 38.26 3.67
402 403 4.258543 CAAAAGATGCCCTTAAGGTACGA 58.741 43.478 20.22 1.37 38.26 3.43
403 404 4.772886 AAAGATGCCCTTAAGGTACGAT 57.227 40.909 20.22 6.18 38.26 3.73
404 405 5.881923 AAAGATGCCCTTAAGGTACGATA 57.118 39.130 20.22 0.50 38.26 2.92
405 406 4.868314 AGATGCCCTTAAGGTACGATAC 57.132 45.455 20.22 5.21 38.26 2.24
406 407 4.481072 AGATGCCCTTAAGGTACGATACT 58.519 43.478 20.22 7.23 38.26 2.12
407 408 5.638133 AGATGCCCTTAAGGTACGATACTA 58.362 41.667 20.22 0.00 38.26 1.82
408 409 6.254522 AGATGCCCTTAAGGTACGATACTAT 58.745 40.000 20.22 1.00 38.26 2.12
409 410 6.724905 AGATGCCCTTAAGGTACGATACTATT 59.275 38.462 20.22 0.00 38.26 1.73
410 411 6.336842 TGCCCTTAAGGTACGATACTATTC 57.663 41.667 20.22 0.00 38.26 1.75
411 412 5.834742 TGCCCTTAAGGTACGATACTATTCA 59.165 40.000 20.22 0.00 38.26 2.57
412 413 6.495872 TGCCCTTAAGGTACGATACTATTCAT 59.504 38.462 20.22 0.00 38.26 2.57
413 414 7.034397 GCCCTTAAGGTACGATACTATTCATC 58.966 42.308 20.22 0.00 38.26 2.92
414 415 7.545489 CCCTTAAGGTACGATACTATTCATCC 58.455 42.308 20.22 0.00 0.00 3.51
415 416 7.249147 CCTTAAGGTACGATACTATTCATCCG 58.751 42.308 13.83 0.00 0.00 4.18
416 417 7.094463 CCTTAAGGTACGATACTATTCATCCGT 60.094 40.741 13.83 0.00 0.00 4.69
417 418 5.624344 AGGTACGATACTATTCATCCGTG 57.376 43.478 0.00 0.00 0.00 4.94
418 419 4.082895 AGGTACGATACTATTCATCCGTGC 60.083 45.833 0.00 0.00 0.00 5.34
419 420 3.299340 ACGATACTATTCATCCGTGCC 57.701 47.619 0.00 0.00 0.00 5.01
420 421 2.891580 ACGATACTATTCATCCGTGCCT 59.108 45.455 0.00 0.00 0.00 4.75
421 422 3.321111 ACGATACTATTCATCCGTGCCTT 59.679 43.478 0.00 0.00 0.00 4.35
422 423 3.675225 CGATACTATTCATCCGTGCCTTG 59.325 47.826 0.00 0.00 0.00 3.61
423 424 4.632153 GATACTATTCATCCGTGCCTTGT 58.368 43.478 0.00 0.00 0.00 3.16
424 425 2.632377 ACTATTCATCCGTGCCTTGTG 58.368 47.619 0.00 0.00 0.00 3.33
425 426 2.027192 ACTATTCATCCGTGCCTTGTGT 60.027 45.455 0.00 0.00 0.00 3.72
426 427 1.167851 ATTCATCCGTGCCTTGTGTG 58.832 50.000 0.00 0.00 0.00 3.82
427 428 0.179032 TTCATCCGTGCCTTGTGTGT 60.179 50.000 0.00 0.00 0.00 3.72
428 429 0.884259 TCATCCGTGCCTTGTGTGTG 60.884 55.000 0.00 0.00 0.00 3.82
429 430 2.260869 ATCCGTGCCTTGTGTGTGC 61.261 57.895 0.00 0.00 0.00 4.57
430 431 3.964875 CCGTGCCTTGTGTGTGCC 61.965 66.667 0.00 0.00 0.00 5.01
431 432 3.208383 CGTGCCTTGTGTGTGCCA 61.208 61.111 0.00 0.00 0.00 4.92
432 433 2.769539 CGTGCCTTGTGTGTGCCAA 61.770 57.895 0.00 0.00 0.00 4.52
433 434 1.066257 GTGCCTTGTGTGTGCCAAG 59.934 57.895 0.00 0.00 39.19 3.61
445 446 2.514824 GCCAAGGCACCGGATCTC 60.515 66.667 9.46 0.00 41.49 2.75
446 447 2.989639 CCAAGGCACCGGATCTCA 59.010 61.111 9.46 0.00 0.00 3.27
447 448 1.153289 CCAAGGCACCGGATCTCAG 60.153 63.158 9.46 0.00 0.00 3.35
448 449 1.599047 CAAGGCACCGGATCTCAGT 59.401 57.895 9.46 0.00 0.00 3.41
449 450 0.460987 CAAGGCACCGGATCTCAGTC 60.461 60.000 9.46 0.00 0.00 3.51
453 454 1.064946 CACCGGATCTCAGTCGCTC 59.935 63.158 9.46 0.00 0.00 5.03
476 477 0.668535 GTCTGGTTGTTTCAGTGGGC 59.331 55.000 0.00 0.00 34.15 5.36
526 530 4.314121 TGTAGCCAAATGTTTCCAATTGC 58.686 39.130 0.00 0.00 31.38 3.56
537 541 0.108585 TCCAATTGCGGGATAGGAGC 59.891 55.000 0.00 0.00 0.00 4.70
593 597 4.136796 TGGCTCCAAATCTCCGAATATTG 58.863 43.478 0.00 0.00 0.00 1.90
639 643 2.793278 ATTCAAAAGTTGTCACGCCC 57.207 45.000 0.00 0.00 0.00 6.13
721 728 5.352569 AGCAGAATTAATGCACGCCTATATC 59.647 40.000 15.38 0.00 46.31 1.63
733 740 4.056050 ACGCCTATATCGATCACCAAAAC 58.944 43.478 0.00 0.00 0.00 2.43
734 741 3.432252 CGCCTATATCGATCACCAAAACC 59.568 47.826 0.00 0.00 0.00 3.27
735 742 4.385825 GCCTATATCGATCACCAAAACCA 58.614 43.478 0.00 0.00 0.00 3.67
875 922 5.180117 TCAGAATTTAGAACTGCTGTTGAGC 59.820 40.000 14.22 0.00 46.44 4.26
914 966 5.352569 ACCAAACTCTCGTTCATTCATCATC 59.647 40.000 0.00 0.00 31.66 2.92
915 967 5.220739 CCAAACTCTCGTTCATTCATCATCC 60.221 44.000 0.00 0.00 31.66 3.51
916 968 4.743057 ACTCTCGTTCATTCATCATCCA 57.257 40.909 0.00 0.00 0.00 3.41
917 969 5.287674 ACTCTCGTTCATTCATCATCCAT 57.712 39.130 0.00 0.00 0.00 3.41
937 989 5.691754 TCCATTCTTATCGTCGTCATCATTG 59.308 40.000 0.00 0.00 0.00 2.82
960 1012 1.070105 ACCGGAAAGTACAGCGCAA 59.930 52.632 9.46 0.00 0.00 4.85
973 1025 0.955919 AGCGCAAGGAAACACTAGCC 60.956 55.000 11.47 0.00 38.28 3.93
976 1028 0.523519 GCAAGGAAACACTAGCCAGC 59.476 55.000 0.00 0.00 0.00 4.85
977 1029 0.798776 CAAGGAAACACTAGCCAGCG 59.201 55.000 0.00 0.00 0.00 5.18
978 1030 0.685097 AAGGAAACACTAGCCAGCGA 59.315 50.000 0.00 0.00 0.00 4.93
979 1031 0.247736 AGGAAACACTAGCCAGCGAG 59.752 55.000 0.00 0.00 0.00 5.03
1038 1095 1.165907 GCAAAGCAAAGCAAACCCCC 61.166 55.000 0.00 0.00 0.00 5.40
1089 1146 1.893808 CCGCATGATTTCCCCCTCG 60.894 63.158 0.00 0.00 0.00 4.63
1091 1148 2.196245 GCATGATTTCCCCCTCGCC 61.196 63.158 0.00 0.00 0.00 5.54
1092 1149 1.529244 CATGATTTCCCCCTCGCCC 60.529 63.158 0.00 0.00 0.00 6.13
1093 1150 3.120086 ATGATTTCCCCCTCGCCCG 62.120 63.158 0.00 0.00 0.00 6.13
1157 1231 1.434696 GCCGGAAATGATGTGGCTG 59.565 57.895 5.05 0.00 42.44 4.85
1178 1252 7.042335 GGCTGTTGTTGATGACTAGTACTAAT 58.958 38.462 3.76 0.00 0.00 1.73
1179 1253 7.549488 GGCTGTTGTTGATGACTAGTACTAATT 59.451 37.037 3.76 0.00 0.00 1.40
1211 1286 4.724602 GCAGCTGCGTGAGACGGA 62.725 66.667 25.23 0.00 42.82 4.69
1520 1595 3.827898 CGGGAGCACCTCGTCCTC 61.828 72.222 0.00 0.00 36.97 3.71
1802 1877 1.275856 GCCAATTTGAGGTTCATGCCA 59.724 47.619 0.00 0.00 0.00 4.92
1826 1901 2.121948 TGCCTCTGCTACATCTTCCAT 58.878 47.619 0.00 0.00 38.71 3.41
2027 2102 6.424812 CAGCGTGGAGAAATTATGATGATGTA 59.575 38.462 0.00 0.00 0.00 2.29
2291 2366 2.646175 CCGTGACATCCAGGTCCGT 61.646 63.158 0.00 0.00 36.97 4.69
2783 2858 3.495276 GCTACTTCCTCCAGATTAAGCCC 60.495 52.174 0.00 0.00 0.00 5.19
3662 3737 4.174411 TCAGACCAAGATAGTCAACACG 57.826 45.455 0.00 0.00 36.68 4.49
4145 4220 2.170817 GAGGGAGGGAATGGTTAGTGAC 59.829 54.545 0.00 0.00 0.00 3.67
4296 4371 4.669206 ACTGCCTCTGAGATAGACATTG 57.331 45.455 6.17 0.00 0.00 2.82
4361 4436 7.392673 AGGCATGAAAATGATGTGTATCCTATC 59.607 37.037 0.00 0.00 32.09 2.08
4469 4544 4.245660 GTGCTGCTCTTATGAAGTACACA 58.754 43.478 0.00 0.00 0.00 3.72
4745 4820 4.022589 CAGAACCATGCCATCATATTCACC 60.023 45.833 0.00 0.00 33.06 4.02
5111 5186 0.954452 CAGGTTTCAACTGCACCCTC 59.046 55.000 0.00 0.00 0.00 4.30
5531 5606 6.410388 ATTCTCTTGAACTGGGTTTTCTACCA 60.410 38.462 0.00 0.00 40.89 3.25
5690 5765 4.488126 TGTTGTGCAGCATAAGAGTTTC 57.512 40.909 4.56 0.00 0.00 2.78
6104 6179 2.119801 ACCAGCTCAAAATCGCAGAT 57.880 45.000 0.00 0.00 45.12 2.90
6122 6197 3.314635 CAGATGGAAGCAGAAGTATTGCC 59.685 47.826 0.00 0.00 42.48 4.52
6227 6302 4.153475 GCAAAGCAACATCTTTACTACCGA 59.847 41.667 0.00 0.00 34.76 4.69
6284 6359 5.532406 GCTGGTGCTGATATTATTCCTGAAA 59.468 40.000 0.00 0.00 36.03 2.69
6753 6839 9.825109 TGGTGAATCATACTATTTCGACAAATA 57.175 29.630 0.00 0.00 33.95 1.40
6870 6957 1.357258 GCTGGTGTCACTGATGAGCG 61.357 60.000 2.35 0.00 34.75 5.03
6899 6986 3.796178 GTGCTGAAAACGAAAAATGCTGA 59.204 39.130 0.00 0.00 0.00 4.26
7051 7476 1.003545 CACCAAGTTTCACTCAGCACG 60.004 52.381 0.00 0.00 0.00 5.34
7053 7478 1.939934 CCAAGTTTCACTCAGCACGAA 59.060 47.619 0.00 0.00 0.00 3.85
7113 7538 2.426738 CCAATGAAGTGTGTGTGGTGTT 59.573 45.455 0.00 0.00 0.00 3.32
7169 7598 6.760770 CCTGTTCTATTTTTGCACTGGAAAAA 59.239 34.615 19.66 19.66 36.86 1.94
7253 7683 1.866853 GCAGGCACTAACCAGGTTGC 61.867 60.000 15.82 10.68 36.02 4.17
7425 7857 5.324409 TGGTGATTTAGGCATTGAGTCTTT 58.676 37.500 0.00 0.00 31.94 2.52
7437 7869 1.082690 GAGTCTTTGCACTAGCTGCC 58.917 55.000 12.71 0.69 46.51 4.85
7453 7885 3.383185 AGCTGCCTGTTAGAGTAGATGAC 59.617 47.826 0.00 0.00 0.00 3.06
7530 7996 8.814931 TGTGTAATTGAGGATTGATGGAAATTT 58.185 29.630 0.00 0.00 0.00 1.82
7573 8039 0.175760 GGTCTGCGCCTCAGTTATGA 59.824 55.000 4.18 0.00 43.32 2.15
7574 8040 1.405526 GGTCTGCGCCTCAGTTATGAA 60.406 52.381 4.18 0.00 43.32 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.054875 ACCCCTAGGTCGTTAATTTGACC 60.055 47.826 8.29 13.65 46.45 4.02
3 4 4.212143 ACCCCTAGGTCGTTAATTTGAC 57.788 45.455 8.29 0.00 46.45 3.18
4 5 4.142182 CGTACCCCTAGGTCGTTAATTTGA 60.142 45.833 8.29 0.00 46.45 2.69
5 6 4.114794 CGTACCCCTAGGTCGTTAATTTG 58.885 47.826 8.29 0.00 46.45 2.32
6 7 3.430790 GCGTACCCCTAGGTCGTTAATTT 60.431 47.826 8.29 0.00 46.45 1.82
7 8 2.101415 GCGTACCCCTAGGTCGTTAATT 59.899 50.000 8.29 0.00 46.45 1.40
8 9 1.683385 GCGTACCCCTAGGTCGTTAAT 59.317 52.381 8.29 0.00 46.45 1.40
9 10 1.102978 GCGTACCCCTAGGTCGTTAA 58.897 55.000 8.29 0.00 46.45 2.01
10 11 1.095228 CGCGTACCCCTAGGTCGTTA 61.095 60.000 8.29 0.00 46.45 3.18
11 12 2.409870 CGCGTACCCCTAGGTCGTT 61.410 63.158 8.29 0.00 46.45 3.85
12 13 2.825836 CGCGTACCCCTAGGTCGT 60.826 66.667 8.29 6.00 46.45 4.34
13 14 4.261781 GCGCGTACCCCTAGGTCG 62.262 72.222 8.43 8.12 46.45 4.79
14 15 3.142838 TGCGCGTACCCCTAGGTC 61.143 66.667 8.43 0.00 46.45 3.85
16 17 4.564116 CGTGCGCGTACCCCTAGG 62.564 72.222 21.71 0.06 40.04 3.02
23 24 1.888958 TTTACAAGGCGTGCGCGTAC 61.889 55.000 22.18 17.94 43.06 3.67
24 25 1.664017 TTTACAAGGCGTGCGCGTA 60.664 52.632 22.18 0.00 43.06 4.42
25 26 2.968156 TTTACAAGGCGTGCGCGT 60.968 55.556 22.18 8.25 43.06 6.01
26 27 2.498887 GTTTACAAGGCGTGCGCG 60.499 61.111 16.86 16.86 43.06 6.86
27 28 1.440353 CAGTTTACAAGGCGTGCGC 60.440 57.895 8.17 8.17 41.06 6.09
28 29 0.163788 CTCAGTTTACAAGGCGTGCG 59.836 55.000 0.00 0.00 0.00 5.34
29 30 1.461127 CTCTCAGTTTACAAGGCGTGC 59.539 52.381 0.00 0.00 0.00 5.34
30 31 2.989840 CTCTCTCAGTTTACAAGGCGTG 59.010 50.000 0.00 0.00 0.00 5.34
31 32 2.891580 TCTCTCTCAGTTTACAAGGCGT 59.108 45.455 0.00 0.00 0.00 5.68
32 33 3.506810 CTCTCTCTCAGTTTACAAGGCG 58.493 50.000 0.00 0.00 0.00 5.52
33 34 3.259625 ACCTCTCTCTCAGTTTACAAGGC 59.740 47.826 0.00 0.00 0.00 4.35
34 35 5.712917 ACTACCTCTCTCTCAGTTTACAAGG 59.287 44.000 0.00 0.00 0.00 3.61
35 36 6.827586 ACTACCTCTCTCTCAGTTTACAAG 57.172 41.667 0.00 0.00 0.00 3.16
36 37 7.460071 AGTACTACCTCTCTCTCAGTTTACAA 58.540 38.462 0.00 0.00 0.00 2.41
37 38 7.018487 AGTACTACCTCTCTCTCAGTTTACA 57.982 40.000 0.00 0.00 0.00 2.41
38 39 9.617523 AATAGTACTACCTCTCTCTCAGTTTAC 57.382 37.037 4.31 0.00 0.00 2.01
39 40 9.835389 GAATAGTACTACCTCTCTCTCAGTTTA 57.165 37.037 4.31 0.00 0.00 2.01
40 41 8.554011 AGAATAGTACTACCTCTCTCTCAGTTT 58.446 37.037 4.31 0.00 0.00 2.66
41 42 8.097791 AGAATAGTACTACCTCTCTCTCAGTT 57.902 38.462 4.31 0.00 0.00 3.16
42 43 7.685849 AGAATAGTACTACCTCTCTCTCAGT 57.314 40.000 4.31 0.00 0.00 3.41
68 69 9.967346 CTTGCATCAATATCTCATTCATTTCTT 57.033 29.630 0.00 0.00 0.00 2.52
69 70 8.082852 GCTTGCATCAATATCTCATTCATTTCT 58.917 33.333 0.00 0.00 0.00 2.52
70 71 8.082852 AGCTTGCATCAATATCTCATTCATTTC 58.917 33.333 0.00 0.00 0.00 2.17
71 72 7.867909 CAGCTTGCATCAATATCTCATTCATTT 59.132 33.333 0.00 0.00 0.00 2.32
72 73 7.371159 CAGCTTGCATCAATATCTCATTCATT 58.629 34.615 0.00 0.00 0.00 2.57
73 74 6.071896 CCAGCTTGCATCAATATCTCATTCAT 60.072 38.462 0.00 0.00 0.00 2.57
74 75 5.240844 CCAGCTTGCATCAATATCTCATTCA 59.759 40.000 0.00 0.00 0.00 2.57
75 76 5.472478 TCCAGCTTGCATCAATATCTCATTC 59.528 40.000 0.00 0.00 0.00 2.67
76 77 5.382616 TCCAGCTTGCATCAATATCTCATT 58.617 37.500 0.00 0.00 0.00 2.57
77 78 4.981812 TCCAGCTTGCATCAATATCTCAT 58.018 39.130 0.00 0.00 0.00 2.90
78 79 4.386711 CTCCAGCTTGCATCAATATCTCA 58.613 43.478 0.00 0.00 0.00 3.27
79 80 3.752222 CCTCCAGCTTGCATCAATATCTC 59.248 47.826 0.00 0.00 0.00 2.75
80 81 3.137913 ACCTCCAGCTTGCATCAATATCT 59.862 43.478 0.00 0.00 0.00 1.98
81 82 3.484407 ACCTCCAGCTTGCATCAATATC 58.516 45.455 0.00 0.00 0.00 1.63
82 83 3.589951 ACCTCCAGCTTGCATCAATAT 57.410 42.857 0.00 0.00 0.00 1.28
83 84 3.370840 AACCTCCAGCTTGCATCAATA 57.629 42.857 0.00 0.00 0.00 1.90
84 85 2.226962 AACCTCCAGCTTGCATCAAT 57.773 45.000 0.00 0.00 0.00 2.57
85 86 1.999648 AAACCTCCAGCTTGCATCAA 58.000 45.000 0.00 0.00 0.00 2.57
86 87 2.877097 TAAACCTCCAGCTTGCATCA 57.123 45.000 0.00 0.00 0.00 3.07
87 88 3.347216 TCTTAAACCTCCAGCTTGCATC 58.653 45.455 0.00 0.00 0.00 3.91
88 89 3.439857 TCTTAAACCTCCAGCTTGCAT 57.560 42.857 0.00 0.00 0.00 3.96
89 90 2.949177 TCTTAAACCTCCAGCTTGCA 57.051 45.000 0.00 0.00 0.00 4.08
90 91 3.084786 ACATCTTAAACCTCCAGCTTGC 58.915 45.455 0.00 0.00 0.00 4.01
91 92 4.520492 ACAACATCTTAAACCTCCAGCTTG 59.480 41.667 0.00 0.00 0.00 4.01
92 93 4.520492 CACAACATCTTAAACCTCCAGCTT 59.480 41.667 0.00 0.00 0.00 3.74
93 94 4.074970 CACAACATCTTAAACCTCCAGCT 58.925 43.478 0.00 0.00 0.00 4.24
94 95 3.366374 GCACAACATCTTAAACCTCCAGC 60.366 47.826 0.00 0.00 0.00 4.85
95 96 3.191371 GGCACAACATCTTAAACCTCCAG 59.809 47.826 0.00 0.00 0.00 3.86
96 97 3.153919 GGCACAACATCTTAAACCTCCA 58.846 45.455 0.00 0.00 0.00 3.86
97 98 2.161609 CGGCACAACATCTTAAACCTCC 59.838 50.000 0.00 0.00 0.00 4.30
98 99 2.414161 GCGGCACAACATCTTAAACCTC 60.414 50.000 0.00 0.00 0.00 3.85
99 100 1.539827 GCGGCACAACATCTTAAACCT 59.460 47.619 0.00 0.00 0.00 3.50
100 101 1.539827 AGCGGCACAACATCTTAAACC 59.460 47.619 1.45 0.00 0.00 3.27
101 102 2.979813 CAAGCGGCACAACATCTTAAAC 59.020 45.455 1.45 0.00 0.00 2.01
102 103 2.606795 GCAAGCGGCACAACATCTTAAA 60.607 45.455 1.45 0.00 43.97 1.52
103 104 1.068610 GCAAGCGGCACAACATCTTAA 60.069 47.619 1.45 0.00 43.97 1.85
104 105 0.521291 GCAAGCGGCACAACATCTTA 59.479 50.000 1.45 0.00 43.97 2.10
105 106 1.286880 GCAAGCGGCACAACATCTT 59.713 52.632 1.45 0.00 43.97 2.40
106 107 2.956987 GCAAGCGGCACAACATCT 59.043 55.556 1.45 0.00 43.97 2.90
125 126 3.070576 ACCGGGGTACAGGCGTAC 61.071 66.667 6.32 9.98 46.18 3.67
126 127 3.069946 CACCGGGGTACAGGCGTA 61.070 66.667 6.32 0.00 0.00 4.42
129 130 4.468689 GAGCACCGGGGTACAGGC 62.469 72.222 5.12 0.00 0.00 4.85
130 131 4.143333 CGAGCACCGGGGTACAGG 62.143 72.222 5.12 0.00 33.91 4.00
131 132 4.814294 GCGAGCACCGGGGTACAG 62.814 72.222 5.12 0.00 39.04 2.74
143 144 4.838486 CTCAGTCCGACCGCGAGC 62.838 72.222 8.23 0.00 40.82 5.03
144 145 2.381665 GATCTCAGTCCGACCGCGAG 62.382 65.000 8.23 0.00 40.82 5.03
145 146 2.437895 ATCTCAGTCCGACCGCGA 60.438 61.111 8.23 0.00 40.82 5.87
146 147 2.024871 GATCTCAGTCCGACCGCG 59.975 66.667 0.00 0.00 37.24 6.46
147 148 2.343163 CTGGATCTCAGTCCGACCGC 62.343 65.000 0.00 0.00 41.35 5.68
148 149 1.730487 CTGGATCTCAGTCCGACCG 59.270 63.158 0.00 0.00 41.35 4.79
157 158 1.300963 GCCAAGGCACTGGATCTCA 59.699 57.895 6.14 0.00 40.86 3.27
158 159 4.232310 GCCAAGGCACTGGATCTC 57.768 61.111 6.14 0.00 40.86 2.75
170 171 1.066257 GTGCCTTGTGTGTGCCAAG 59.934 57.895 0.00 0.00 39.19 3.61
171 172 2.769539 CGTGCCTTGTGTGTGCCAA 61.770 57.895 0.00 0.00 0.00 4.52
172 173 3.208383 CGTGCCTTGTGTGTGCCA 61.208 61.111 0.00 0.00 0.00 4.92
173 174 3.964875 CCGTGCCTTGTGTGTGCC 61.965 66.667 0.00 0.00 0.00 5.01
174 175 2.260869 ATCCGTGCCTTGTGTGTGC 61.261 57.895 0.00 0.00 0.00 4.57
175 176 0.884259 TCATCCGTGCCTTGTGTGTG 60.884 55.000 0.00 0.00 0.00 3.82
176 177 0.179032 TTCATCCGTGCCTTGTGTGT 60.179 50.000 0.00 0.00 0.00 3.72
177 178 0.238289 GTTCATCCGTGCCTTGTGTG 59.762 55.000 0.00 0.00 0.00 3.82
178 179 0.179032 TGTTCATCCGTGCCTTGTGT 60.179 50.000 0.00 0.00 0.00 3.72
179 180 0.518636 CTGTTCATCCGTGCCTTGTG 59.481 55.000 0.00 0.00 0.00 3.33
180 181 0.108585 ACTGTTCATCCGTGCCTTGT 59.891 50.000 0.00 0.00 0.00 3.16
181 182 2.093306 TACTGTTCATCCGTGCCTTG 57.907 50.000 0.00 0.00 0.00 3.61
182 183 2.738643 CGATACTGTTCATCCGTGCCTT 60.739 50.000 0.00 0.00 0.00 4.35
183 184 1.202417 CGATACTGTTCATCCGTGCCT 60.202 52.381 0.00 0.00 0.00 4.75
184 185 1.209128 CGATACTGTTCATCCGTGCC 58.791 55.000 0.00 0.00 0.00 5.01
185 186 1.588404 CACGATACTGTTCATCCGTGC 59.412 52.381 0.00 0.00 0.00 5.34
186 187 1.588404 GCACGATACTGTTCATCCGTG 59.412 52.381 0.00 0.00 33.76 4.94
187 188 1.470979 GGCACGATACTGTTCATCCGT 60.471 52.381 0.00 0.00 0.00 4.69
188 189 1.202417 AGGCACGATACTGTTCATCCG 60.202 52.381 0.00 0.00 0.00 4.18
189 190 2.604046 AGGCACGATACTGTTCATCC 57.396 50.000 0.00 0.00 0.00 3.51
190 191 3.521560 TCAAGGCACGATACTGTTCATC 58.478 45.455 0.00 0.00 0.00 2.92
191 192 3.525537 CTCAAGGCACGATACTGTTCAT 58.474 45.455 0.00 0.00 0.00 2.57
192 193 2.930887 GCTCAAGGCACGATACTGTTCA 60.931 50.000 0.00 0.00 41.35 3.18
193 194 1.661112 GCTCAAGGCACGATACTGTTC 59.339 52.381 0.00 0.00 41.35 3.18
194 195 1.276421 AGCTCAAGGCACGATACTGTT 59.724 47.619 0.00 0.00 44.79 3.16
195 196 0.898320 AGCTCAAGGCACGATACTGT 59.102 50.000 0.00 0.00 44.79 3.55
196 197 2.015736 AAGCTCAAGGCACGATACTG 57.984 50.000 0.00 0.00 44.79 2.74
197 198 2.028112 TGAAAGCTCAAGGCACGATACT 60.028 45.455 0.00 0.00 44.79 2.12
198 199 2.346803 TGAAAGCTCAAGGCACGATAC 58.653 47.619 0.00 0.00 44.79 2.24
199 200 2.621338 CTGAAAGCTCAAGGCACGATA 58.379 47.619 0.00 0.00 44.79 2.92
200 201 1.446907 CTGAAAGCTCAAGGCACGAT 58.553 50.000 0.00 0.00 44.79 3.73
201 202 2.918571 CTGAAAGCTCAAGGCACGA 58.081 52.632 0.00 0.00 44.79 4.35
221 222 4.270325 GGAACCTTGATTTCCGATCTAACG 59.730 45.833 0.00 0.00 33.46 3.18
222 223 5.183228 TGGAACCTTGATTTCCGATCTAAC 58.817 41.667 0.00 0.00 44.95 2.34
223 224 5.188948 TCTGGAACCTTGATTTCCGATCTAA 59.811 40.000 0.00 0.00 44.95 2.10
224 225 4.714802 TCTGGAACCTTGATTTCCGATCTA 59.285 41.667 0.00 0.00 44.95 1.98
225 226 3.519510 TCTGGAACCTTGATTTCCGATCT 59.480 43.478 0.00 0.00 44.95 2.75
226 227 3.873910 TCTGGAACCTTGATTTCCGATC 58.126 45.455 0.00 0.00 44.95 3.69
227 228 4.510167 ATCTGGAACCTTGATTTCCGAT 57.490 40.909 0.00 0.00 44.95 4.18
228 229 4.301072 AATCTGGAACCTTGATTTCCGA 57.699 40.909 0.00 0.00 44.95 4.55
229 230 4.986622 GAAATCTGGAACCTTGATTTCCG 58.013 43.478 24.13 5.87 44.95 4.30
232 233 6.070656 TCACTGAAATCTGGAACCTTGATTT 58.929 36.000 17.51 17.51 41.37 2.17
233 234 5.634118 TCACTGAAATCTGGAACCTTGATT 58.366 37.500 0.00 0.00 32.52 2.57
234 235 5.246981 TCACTGAAATCTGGAACCTTGAT 57.753 39.130 0.00 0.00 0.00 2.57
235 236 4.705110 TCACTGAAATCTGGAACCTTGA 57.295 40.909 0.00 0.00 0.00 3.02
236 237 4.580167 TGTTCACTGAAATCTGGAACCTTG 59.420 41.667 0.00 0.00 37.61 3.61
237 238 4.792068 TGTTCACTGAAATCTGGAACCTT 58.208 39.130 0.00 0.00 37.61 3.50
238 239 4.141390 ACTGTTCACTGAAATCTGGAACCT 60.141 41.667 0.00 0.00 37.61 3.50
239 240 4.137543 ACTGTTCACTGAAATCTGGAACC 58.862 43.478 0.00 0.00 37.61 3.62
240 241 5.179555 GGTACTGTTCACTGAAATCTGGAAC 59.820 44.000 0.00 0.00 38.59 3.62
241 242 5.305585 GGTACTGTTCACTGAAATCTGGAA 58.694 41.667 0.00 0.00 0.00 3.53
242 243 4.262894 GGGTACTGTTCACTGAAATCTGGA 60.263 45.833 0.00 0.00 0.00 3.86
243 244 4.003648 GGGTACTGTTCACTGAAATCTGG 58.996 47.826 0.00 0.00 0.00 3.86
244 245 4.003648 GGGGTACTGTTCACTGAAATCTG 58.996 47.826 0.00 0.00 0.00 2.90
245 246 3.306780 CGGGGTACTGTTCACTGAAATCT 60.307 47.826 0.00 0.00 0.00 2.40
246 247 3.000727 CGGGGTACTGTTCACTGAAATC 58.999 50.000 0.00 0.00 0.00 2.17
247 248 2.874457 GCGGGGTACTGTTCACTGAAAT 60.874 50.000 0.00 0.00 0.00 2.17
248 249 1.541670 GCGGGGTACTGTTCACTGAAA 60.542 52.381 0.00 0.00 0.00 2.69
249 250 0.034337 GCGGGGTACTGTTCACTGAA 59.966 55.000 0.00 0.00 0.00 3.02
250 251 1.669440 GCGGGGTACTGTTCACTGA 59.331 57.895 0.00 0.00 0.00 3.41
251 252 1.736645 CGCGGGGTACTGTTCACTG 60.737 63.158 0.00 0.00 0.00 3.66
252 253 2.654877 CGCGGGGTACTGTTCACT 59.345 61.111 0.00 0.00 0.00 3.41
253 254 2.216750 TAGCGCGGGGTACTGTTCAC 62.217 60.000 8.83 0.00 0.00 3.18
254 255 1.978080 TAGCGCGGGGTACTGTTCA 60.978 57.895 8.83 0.00 0.00 3.18
255 256 1.517913 GTAGCGCGGGGTACTGTTC 60.518 63.158 28.24 7.42 42.46 3.18
256 257 2.221906 CTGTAGCGCGGGGTACTGTT 62.222 60.000 32.69 0.00 45.22 3.16
257 258 2.677524 TGTAGCGCGGGGTACTGT 60.678 61.111 32.69 0.00 45.22 3.55
258 259 2.104331 CTGTAGCGCGGGGTACTG 59.896 66.667 32.69 29.24 45.22 2.74
259 260 2.362120 ACTGTAGCGCGGGGTACT 60.362 61.111 32.69 17.59 45.22 2.73
260 261 2.202703 CACTGTAGCGCGGGGTAC 60.203 66.667 28.65 28.65 45.21 3.34
261 262 2.677524 ACACTGTAGCGCGGGGTA 60.678 61.111 8.83 7.36 38.58 3.69
262 263 4.373116 CACACTGTAGCGCGGGGT 62.373 66.667 8.83 9.74 41.72 4.95
263 264 3.876589 AACACACTGTAGCGCGGGG 62.877 63.158 8.83 0.00 0.00 5.73
264 265 2.357034 AACACACTGTAGCGCGGG 60.357 61.111 8.83 0.00 0.00 6.13
265 266 2.667318 CCAACACACTGTAGCGCGG 61.667 63.158 8.83 0.00 0.00 6.46
266 267 1.886861 GACCAACACACTGTAGCGCG 61.887 60.000 0.00 0.00 0.00 6.86
267 268 1.566018 GGACCAACACACTGTAGCGC 61.566 60.000 0.00 0.00 0.00 5.92
268 269 0.033504 AGGACCAACACACTGTAGCG 59.966 55.000 0.00 0.00 0.00 4.26
269 270 1.202651 ACAGGACCAACACACTGTAGC 60.203 52.381 0.00 0.00 41.95 3.58
270 271 2.910688 ACAGGACCAACACACTGTAG 57.089 50.000 0.00 0.00 41.95 2.74
271 272 2.036733 GCTACAGGACCAACACACTGTA 59.963 50.000 0.00 0.00 43.34 2.74
272 273 1.202651 GCTACAGGACCAACACACTGT 60.203 52.381 0.00 0.00 45.32 3.55
273 274 1.512926 GCTACAGGACCAACACACTG 58.487 55.000 0.00 0.00 37.01 3.66
274 275 0.033504 CGCTACAGGACCAACACACT 59.966 55.000 0.00 0.00 0.00 3.55
275 276 0.032952 TCGCTACAGGACCAACACAC 59.967 55.000 0.00 0.00 0.00 3.82
276 277 0.973632 ATCGCTACAGGACCAACACA 59.026 50.000 0.00 0.00 0.00 3.72
277 278 2.094762 AATCGCTACAGGACCAACAC 57.905 50.000 0.00 0.00 0.00 3.32
278 279 3.181469 GGATAATCGCTACAGGACCAACA 60.181 47.826 0.00 0.00 0.00 3.33
279 280 3.069729 AGGATAATCGCTACAGGACCAAC 59.930 47.826 0.00 0.00 0.00 3.77
280 281 3.305720 AGGATAATCGCTACAGGACCAA 58.694 45.455 0.00 0.00 0.00 3.67
281 282 2.891580 GAGGATAATCGCTACAGGACCA 59.108 50.000 0.00 0.00 0.00 4.02
282 283 3.158676 AGAGGATAATCGCTACAGGACC 58.841 50.000 0.00 0.00 0.00 4.46
283 284 4.142556 GCTAGAGGATAATCGCTACAGGAC 60.143 50.000 0.00 0.00 0.00 3.85
284 285 4.011023 GCTAGAGGATAATCGCTACAGGA 58.989 47.826 0.00 0.00 0.00 3.86
285 286 3.759086 TGCTAGAGGATAATCGCTACAGG 59.241 47.826 0.00 0.00 0.00 4.00
286 287 4.697828 TCTGCTAGAGGATAATCGCTACAG 59.302 45.833 0.00 0.00 0.00 2.74
287 288 4.456222 GTCTGCTAGAGGATAATCGCTACA 59.544 45.833 0.00 0.00 0.00 2.74
288 289 4.698304 AGTCTGCTAGAGGATAATCGCTAC 59.302 45.833 0.00 0.00 0.00 3.58
289 290 4.912586 AGTCTGCTAGAGGATAATCGCTA 58.087 43.478 0.00 0.00 0.00 4.26
290 291 3.761897 AGTCTGCTAGAGGATAATCGCT 58.238 45.455 0.00 0.00 0.00 4.93
291 292 4.481463 GAAGTCTGCTAGAGGATAATCGC 58.519 47.826 0.00 0.00 0.00 4.58
292 293 4.764823 AGGAAGTCTGCTAGAGGATAATCG 59.235 45.833 0.00 0.00 0.00 3.34
293 294 6.024552 CAGGAAGTCTGCTAGAGGATAATC 57.975 45.833 0.00 0.00 36.60 1.75
307 308 1.134965 GTGCATCGCTACAGGAAGTCT 60.135 52.381 0.00 0.00 0.00 3.24
308 309 1.134965 AGTGCATCGCTACAGGAAGTC 60.135 52.381 0.00 0.00 0.00 3.01
309 310 0.898320 AGTGCATCGCTACAGGAAGT 59.102 50.000 0.00 0.00 0.00 3.01
310 311 1.284657 CAGTGCATCGCTACAGGAAG 58.715 55.000 0.00 0.00 0.00 3.46
311 312 0.608130 ACAGTGCATCGCTACAGGAA 59.392 50.000 0.00 0.00 0.00 3.36
312 313 1.405463 CTACAGTGCATCGCTACAGGA 59.595 52.381 0.00 0.00 0.00 3.86
313 314 1.845266 CTACAGTGCATCGCTACAGG 58.155 55.000 0.00 0.00 0.00 4.00
314 315 1.203928 GCTACAGTGCATCGCTACAG 58.796 55.000 0.00 0.00 0.00 2.74
315 316 0.525455 CGCTACAGTGCATCGCTACA 60.525 55.000 0.00 0.00 0.00 2.74
316 317 1.209275 CCGCTACAGTGCATCGCTAC 61.209 60.000 0.00 0.00 0.00 3.58
317 318 1.065764 CCGCTACAGTGCATCGCTA 59.934 57.895 0.00 0.00 0.00 4.26
318 319 2.202797 CCGCTACAGTGCATCGCT 60.203 61.111 0.00 0.00 0.00 4.93
319 320 2.509336 ACCGCTACAGTGCATCGC 60.509 61.111 0.00 0.00 0.00 4.58
320 321 1.153842 TCACCGCTACAGTGCATCG 60.154 57.895 0.00 0.00 35.14 3.84
321 322 0.108615 AGTCACCGCTACAGTGCATC 60.109 55.000 0.00 0.00 35.14 3.91
322 323 0.108615 GAGTCACCGCTACAGTGCAT 60.109 55.000 0.00 0.00 35.14 3.96
323 324 1.179174 AGAGTCACCGCTACAGTGCA 61.179 55.000 0.00 0.00 35.14 4.57
324 325 0.038159 AAGAGTCACCGCTACAGTGC 60.038 55.000 0.00 0.00 35.14 4.40
325 326 1.269723 TCAAGAGTCACCGCTACAGTG 59.730 52.381 0.00 0.00 36.54 3.66
326 327 1.617322 TCAAGAGTCACCGCTACAGT 58.383 50.000 0.00 0.00 0.00 3.55
327 328 2.094494 ACATCAAGAGTCACCGCTACAG 60.094 50.000 0.00 0.00 0.00 2.74
328 329 1.893137 ACATCAAGAGTCACCGCTACA 59.107 47.619 0.00 0.00 0.00 2.74
329 330 2.656560 ACATCAAGAGTCACCGCTAC 57.343 50.000 0.00 0.00 0.00 3.58
330 331 2.560981 TGAACATCAAGAGTCACCGCTA 59.439 45.455 0.00 0.00 0.00 4.26
331 332 1.344438 TGAACATCAAGAGTCACCGCT 59.656 47.619 0.00 0.00 0.00 5.52
332 333 1.795768 TGAACATCAAGAGTCACCGC 58.204 50.000 0.00 0.00 0.00 5.68
333 334 3.125829 CCAATGAACATCAAGAGTCACCG 59.874 47.826 0.00 0.00 0.00 4.94
334 335 4.154918 GTCCAATGAACATCAAGAGTCACC 59.845 45.833 0.00 0.00 0.00 4.02
335 336 4.154918 GGTCCAATGAACATCAAGAGTCAC 59.845 45.833 0.00 0.00 0.00 3.67
336 337 4.326826 GGTCCAATGAACATCAAGAGTCA 58.673 43.478 0.00 0.00 0.00 3.41
337 338 3.372206 CGGTCCAATGAACATCAAGAGTC 59.628 47.826 0.00 0.00 0.00 3.36
338 339 3.244561 ACGGTCCAATGAACATCAAGAGT 60.245 43.478 0.00 0.00 0.00 3.24
339 340 3.338249 ACGGTCCAATGAACATCAAGAG 58.662 45.455 0.00 0.00 0.00 2.85
340 341 3.334691 GACGGTCCAATGAACATCAAGA 58.665 45.455 0.00 0.00 0.00 3.02
341 342 2.094258 CGACGGTCCAATGAACATCAAG 59.906 50.000 1.91 0.00 0.00 3.02
342 343 2.073056 CGACGGTCCAATGAACATCAA 58.927 47.619 1.91 0.00 0.00 2.57
343 344 1.720805 CGACGGTCCAATGAACATCA 58.279 50.000 1.91 0.00 0.00 3.07
344 345 0.373716 GCGACGGTCCAATGAACATC 59.626 55.000 1.91 0.00 0.00 3.06
345 346 0.036388 AGCGACGGTCCAATGAACAT 60.036 50.000 1.91 0.00 0.00 2.71
346 347 0.250124 AAGCGACGGTCCAATGAACA 60.250 50.000 0.00 0.00 0.00 3.18
347 348 0.165944 CAAGCGACGGTCCAATGAAC 59.834 55.000 0.00 0.00 0.00 3.18
348 349 0.250124 ACAAGCGACGGTCCAATGAA 60.250 50.000 0.00 0.00 0.00 2.57
349 350 0.604073 TACAAGCGACGGTCCAATGA 59.396 50.000 0.00 0.00 0.00 2.57
350 351 0.999406 CTACAAGCGACGGTCCAATG 59.001 55.000 0.00 0.00 0.00 2.82
351 352 0.892755 TCTACAAGCGACGGTCCAAT 59.107 50.000 0.00 0.00 0.00 3.16
352 353 0.892755 ATCTACAAGCGACGGTCCAA 59.107 50.000 0.00 0.00 0.00 3.53
353 354 0.454600 GATCTACAAGCGACGGTCCA 59.545 55.000 0.00 0.00 0.00 4.02
354 355 0.248949 GGATCTACAAGCGACGGTCC 60.249 60.000 0.00 0.00 0.00 4.46
355 356 0.454600 TGGATCTACAAGCGACGGTC 59.545 55.000 0.00 0.00 0.00 4.79
356 357 0.892755 TTGGATCTACAAGCGACGGT 59.107 50.000 0.00 0.00 0.00 4.83
357 358 1.278238 GTTGGATCTACAAGCGACGG 58.722 55.000 0.00 0.00 0.00 4.79
358 359 0.914551 CGTTGGATCTACAAGCGACG 59.085 55.000 0.00 0.00 31.39 5.12
359 360 1.918609 GACGTTGGATCTACAAGCGAC 59.081 52.381 0.00 4.75 32.89 5.19
360 361 1.135199 GGACGTTGGATCTACAAGCGA 60.135 52.381 0.00 0.00 32.89 4.93
361 362 1.278238 GGACGTTGGATCTACAAGCG 58.722 55.000 0.00 0.00 33.93 4.68
362 363 2.380084 TGGACGTTGGATCTACAAGC 57.620 50.000 0.00 0.00 0.00 4.01
363 364 4.994852 TCTTTTGGACGTTGGATCTACAAG 59.005 41.667 0.00 0.00 0.00 3.16
364 365 4.963373 TCTTTTGGACGTTGGATCTACAA 58.037 39.130 0.00 0.00 0.00 2.41
365 366 4.610605 TCTTTTGGACGTTGGATCTACA 57.389 40.909 0.00 0.00 0.00 2.74
366 367 4.201822 GCATCTTTTGGACGTTGGATCTAC 60.202 45.833 0.00 0.00 0.00 2.59
367 368 3.938963 GCATCTTTTGGACGTTGGATCTA 59.061 43.478 0.00 0.00 0.00 1.98
368 369 2.749621 GCATCTTTTGGACGTTGGATCT 59.250 45.455 0.00 0.00 0.00 2.75
369 370 2.159379 GGCATCTTTTGGACGTTGGATC 60.159 50.000 0.00 0.00 0.00 3.36
370 371 1.818674 GGCATCTTTTGGACGTTGGAT 59.181 47.619 0.00 0.00 0.00 3.41
371 372 1.243902 GGCATCTTTTGGACGTTGGA 58.756 50.000 0.00 0.00 0.00 3.53
372 373 0.243636 GGGCATCTTTTGGACGTTGG 59.756 55.000 0.00 0.00 0.00 3.77
373 374 1.247567 AGGGCATCTTTTGGACGTTG 58.752 50.000 0.00 0.00 0.00 4.10
374 375 1.995376 AAGGGCATCTTTTGGACGTT 58.005 45.000 0.00 0.00 29.99 3.99
375 376 2.871096 TAAGGGCATCTTTTGGACGT 57.129 45.000 0.00 0.00 36.93 4.34
376 377 2.423538 CCTTAAGGGCATCTTTTGGACG 59.576 50.000 14.25 0.00 36.93 4.79
377 378 3.431415 ACCTTAAGGGCATCTTTTGGAC 58.569 45.455 25.31 0.00 40.27 4.02
378 379 3.825908 ACCTTAAGGGCATCTTTTGGA 57.174 42.857 25.31 0.00 40.27 3.53
379 380 3.377172 CGTACCTTAAGGGCATCTTTTGG 59.623 47.826 25.31 0.00 40.27 3.28
380 381 4.258543 TCGTACCTTAAGGGCATCTTTTG 58.741 43.478 25.31 4.98 40.27 2.44
381 382 4.563140 TCGTACCTTAAGGGCATCTTTT 57.437 40.909 25.31 4.40 40.27 2.27
382 383 4.772886 ATCGTACCTTAAGGGCATCTTT 57.227 40.909 25.31 5.15 40.27 2.52
383 384 4.900054 AGTATCGTACCTTAAGGGCATCTT 59.100 41.667 25.31 5.89 40.27 2.40
384 385 4.481072 AGTATCGTACCTTAAGGGCATCT 58.519 43.478 25.31 6.63 40.27 2.90
385 386 4.868314 AGTATCGTACCTTAAGGGCATC 57.132 45.455 25.31 11.05 40.27 3.91
386 387 6.495872 TGAATAGTATCGTACCTTAAGGGCAT 59.504 38.462 25.31 12.90 40.27 4.40
387 388 5.834742 TGAATAGTATCGTACCTTAAGGGCA 59.165 40.000 25.31 10.09 40.27 5.36
388 389 6.336842 TGAATAGTATCGTACCTTAAGGGC 57.663 41.667 25.31 15.89 40.27 5.19
389 390 7.545489 GGATGAATAGTATCGTACCTTAAGGG 58.455 42.308 25.31 8.14 40.27 3.95
390 391 7.094463 ACGGATGAATAGTATCGTACCTTAAGG 60.094 40.741 20.42 20.42 42.17 2.69
391 392 7.749570 CACGGATGAATAGTATCGTACCTTAAG 59.250 40.741 0.00 0.00 0.00 1.85
392 393 7.587629 CACGGATGAATAGTATCGTACCTTAA 58.412 38.462 0.00 0.00 0.00 1.85
393 394 6.348786 GCACGGATGAATAGTATCGTACCTTA 60.349 42.308 0.00 0.00 0.00 2.69
394 395 5.564259 GCACGGATGAATAGTATCGTACCTT 60.564 44.000 0.00 0.00 0.00 3.50
395 396 4.082895 GCACGGATGAATAGTATCGTACCT 60.083 45.833 0.00 0.00 0.00 3.08
396 397 4.164294 GCACGGATGAATAGTATCGTACC 58.836 47.826 0.00 0.00 0.00 3.34
397 398 4.082895 AGGCACGGATGAATAGTATCGTAC 60.083 45.833 0.00 0.00 0.00 3.67
398 399 4.077108 AGGCACGGATGAATAGTATCGTA 58.923 43.478 0.00 0.00 0.00 3.43
399 400 2.891580 AGGCACGGATGAATAGTATCGT 59.108 45.455 0.00 0.00 0.00 3.73
400 401 3.577649 AGGCACGGATGAATAGTATCG 57.422 47.619 0.00 0.00 0.00 2.92
401 402 4.449068 CACAAGGCACGGATGAATAGTATC 59.551 45.833 0.00 0.00 0.00 2.24
402 403 4.141711 ACACAAGGCACGGATGAATAGTAT 60.142 41.667 0.00 0.00 0.00 2.12
403 404 3.196901 ACACAAGGCACGGATGAATAGTA 59.803 43.478 0.00 0.00 0.00 1.82
404 405 2.027192 ACACAAGGCACGGATGAATAGT 60.027 45.455 0.00 0.00 0.00 2.12
405 406 2.352651 CACACAAGGCACGGATGAATAG 59.647 50.000 0.00 0.00 0.00 1.73
406 407 2.290008 ACACACAAGGCACGGATGAATA 60.290 45.455 0.00 0.00 0.00 1.75
407 408 1.167851 CACACAAGGCACGGATGAAT 58.832 50.000 0.00 0.00 0.00 2.57
408 409 0.179032 ACACACAAGGCACGGATGAA 60.179 50.000 0.00 0.00 0.00 2.57
409 410 0.884259 CACACACAAGGCACGGATGA 60.884 55.000 0.00 0.00 0.00 2.92
410 411 1.575922 CACACACAAGGCACGGATG 59.424 57.895 0.00 0.00 0.00 3.51
411 412 2.260869 GCACACACAAGGCACGGAT 61.261 57.895 0.00 0.00 0.00 4.18
412 413 2.899838 GCACACACAAGGCACGGA 60.900 61.111 0.00 0.00 0.00 4.69
413 414 3.964875 GGCACACACAAGGCACGG 61.965 66.667 0.00 0.00 0.00 4.94
414 415 2.666715 CTTGGCACACACAAGGCACG 62.667 60.000 0.00 0.00 41.16 5.34
415 416 1.066257 CTTGGCACACACAAGGCAC 59.934 57.895 0.00 0.00 41.16 5.01
416 417 3.524014 CTTGGCACACACAAGGCA 58.476 55.556 0.00 0.00 41.16 4.75
419 420 1.066257 GTGCCTTGGCACACACAAG 59.934 57.895 32.37 0.00 43.73 3.16
420 421 2.422231 GGTGCCTTGGCACACACAA 61.422 57.895 35.86 4.44 41.97 3.33
421 422 2.832661 GGTGCCTTGGCACACACA 60.833 61.111 35.86 5.15 41.97 3.72
422 423 3.964875 CGGTGCCTTGGCACACAC 61.965 66.667 35.86 22.49 41.97 3.82
424 425 4.947147 TCCGGTGCCTTGGCACAC 62.947 66.667 35.86 26.15 41.97 3.82
425 426 3.918253 GATCCGGTGCCTTGGCACA 62.918 63.158 35.86 22.00 41.97 4.57
426 427 3.134127 GATCCGGTGCCTTGGCAC 61.134 66.667 30.40 30.40 39.72 5.01
427 428 3.329542 GAGATCCGGTGCCTTGGCA 62.330 63.158 10.65 10.65 0.00 4.92
428 429 2.514824 GAGATCCGGTGCCTTGGC 60.515 66.667 0.00 4.43 0.00 4.52
429 430 1.153289 CTGAGATCCGGTGCCTTGG 60.153 63.158 0.00 0.00 0.00 3.61
430 431 0.460987 GACTGAGATCCGGTGCCTTG 60.461 60.000 0.00 0.00 33.70 3.61
431 432 1.901085 GACTGAGATCCGGTGCCTT 59.099 57.895 0.00 0.00 33.70 4.35
432 433 2.418910 CGACTGAGATCCGGTGCCT 61.419 63.158 0.00 0.00 33.70 4.75
433 434 2.105128 CGACTGAGATCCGGTGCC 59.895 66.667 0.00 0.00 33.70 5.01
434 435 2.583593 GCGACTGAGATCCGGTGC 60.584 66.667 0.00 0.00 33.70 5.01
435 436 1.064946 GAGCGACTGAGATCCGGTG 59.935 63.158 0.00 0.00 33.70 4.94
436 437 2.473760 CGAGCGACTGAGATCCGGT 61.474 63.158 0.00 0.00 37.00 5.28
437 438 2.329690 CGAGCGACTGAGATCCGG 59.670 66.667 0.00 0.00 0.00 5.14
438 439 2.352915 GCGAGCGACTGAGATCCG 60.353 66.667 0.00 0.00 0.00 4.18
439 440 2.352915 CGCGAGCGACTGAGATCC 60.353 66.667 12.58 0.00 42.83 3.36
440 441 2.352915 CCGCGAGCGACTGAGATC 60.353 66.667 19.72 0.00 42.83 2.75
441 442 3.114647 GACCGCGAGCGACTGAGAT 62.115 63.158 19.72 0.00 42.83 2.75
442 443 3.800863 GACCGCGAGCGACTGAGA 61.801 66.667 19.72 0.00 42.83 3.27
443 444 3.805307 AGACCGCGAGCGACTGAG 61.805 66.667 19.72 4.09 42.83 3.35
444 445 4.103103 CAGACCGCGAGCGACTGA 62.103 66.667 26.33 0.00 41.72 3.41
447 448 4.719369 AACCAGACCGCGAGCGAC 62.719 66.667 19.72 12.10 42.83 5.19
448 449 4.717629 CAACCAGACCGCGAGCGA 62.718 66.667 19.72 0.00 42.83 4.93
453 454 1.157870 ACTGAAACAACCAGACCGCG 61.158 55.000 0.00 0.00 35.69 6.46
639 643 4.366684 AGCGGAAAAGGGGCTGGG 62.367 66.667 0.00 0.00 35.31 4.45
647 651 1.923204 CAGACGAGATGAGCGGAAAAG 59.077 52.381 0.00 0.00 0.00 2.27
721 728 7.145323 AGATAACTTTTTGGTTTTGGTGATCG 58.855 34.615 0.00 0.00 0.00 3.69
733 740 5.064198 TGGATTCGCGTAGATAACTTTTTGG 59.936 40.000 5.77 0.00 0.00 3.28
734 741 5.957796 GTGGATTCGCGTAGATAACTTTTTG 59.042 40.000 5.77 0.00 0.00 2.44
735 742 5.873164 AGTGGATTCGCGTAGATAACTTTTT 59.127 36.000 5.77 0.00 0.00 1.94
787 834 1.135046 CACTCAACTGACTCGCTGTG 58.865 55.000 0.00 0.00 0.00 3.66
875 922 2.293677 TTGGTGATGCGCTACTACAG 57.706 50.000 9.73 0.00 0.00 2.74
914 966 5.463392 ACAATGATGACGACGATAAGAATGG 59.537 40.000 0.00 0.00 0.00 3.16
915 967 6.346120 GGACAATGATGACGACGATAAGAATG 60.346 42.308 0.00 0.00 0.00 2.67
916 968 5.692204 GGACAATGATGACGACGATAAGAAT 59.308 40.000 0.00 0.00 0.00 2.40
917 969 5.041287 GGACAATGATGACGACGATAAGAA 58.959 41.667 0.00 0.00 0.00 2.52
937 989 0.672711 GCTGTACTTTCCGGTGGGAC 60.673 60.000 0.00 0.05 43.74 4.46
960 1012 0.247736 CTCGCTGGCTAGTGTTTCCT 59.752 55.000 10.66 0.00 35.88 3.36
977 1029 4.539881 GACTCGACCCGCTCGCTC 62.540 72.222 0.00 0.00 42.62 5.03
1055 1112 2.556287 GGCGTTTGTCTGGCTTCG 59.444 61.111 0.00 0.00 0.00 3.79
1059 1116 3.737172 ATGCGGCGTTTGTCTGGC 61.737 61.111 9.37 0.00 0.00 4.85
1071 1128 1.893808 CGAGGGGGAAATCATGCGG 60.894 63.158 0.00 0.00 0.00 5.69
1157 1231 9.303537 GAGGAATTAGTACTAGTCATCAACAAC 57.696 37.037 18.24 0.00 0.00 3.32
1178 1252 2.276732 CTGCAAAACAGGAGGAGGAA 57.723 50.000 0.00 0.00 43.19 3.36
1211 1286 2.282391 TTGCGCAGGTGGCTCATT 60.282 55.556 11.31 0.00 37.03 2.57
1517 1592 4.821589 GCGTTGGCGAGGAGGAGG 62.822 72.222 0.00 0.00 41.33 4.30
1606 1681 0.105778 GAGGAGCTTCTTCCGGATGG 59.894 60.000 16.68 7.95 42.29 3.51
1826 1901 0.616395 TGAGGTCGAGGGCCATGTAA 60.616 55.000 6.18 0.00 0.00 2.41
1976 2051 1.937546 GCTTGGTCCCATTTCGGCTG 61.938 60.000 0.00 0.00 0.00 4.85
1982 2057 0.188342 AGTGTGGCTTGGTCCCATTT 59.812 50.000 0.00 0.00 34.34 2.32
2027 2102 2.093447 CCGGCTCCAGAAGTACTCATTT 60.093 50.000 0.00 0.00 0.00 2.32
2291 2366 2.618442 TGATGAACACTGACAGCACA 57.382 45.000 1.25 0.00 0.00 4.57
3047 3122 3.282021 GTGCTCCTCTGGCATCAAATTA 58.718 45.455 0.00 0.00 41.86 1.40
3662 3737 4.180057 CAAGGACATAGAGAGTCTGCAAC 58.820 47.826 0.00 0.00 36.29 4.17
4145 4220 2.566833 TCCCAGCCCAAATATCATCG 57.433 50.000 0.00 0.00 0.00 3.84
4296 4371 3.858503 GCCAGATGTTTTGTTCCTTCTGC 60.859 47.826 0.00 0.00 33.70 4.26
4469 4544 0.541392 TCTGGCAAGCGACCACATAT 59.459 50.000 0.00 0.00 32.49 1.78
4745 4820 1.579964 TTTGCACTGCATCGCCTCTG 61.580 55.000 4.10 0.00 38.76 3.35
5039 5114 3.008157 TCGATGCCTTACTTAAACCACCA 59.992 43.478 0.00 0.00 0.00 4.17
5111 5186 0.808755 GGCTAACATTTCCACCACGG 59.191 55.000 0.00 0.00 0.00 4.94
5273 5348 5.935206 TGTATAAAACACAGAAAGCATCCGA 59.065 36.000 0.00 0.00 31.43 4.55
5690 5765 5.385617 GCATATAGCCTGTAATTTTCAGCG 58.614 41.667 0.00 0.00 37.23 5.18
6104 6179 1.003118 ACGGCAATACTTCTGCTTCCA 59.997 47.619 0.00 0.00 39.82 3.53
6122 6197 2.672961 TCCAGGAAAGCAGATACACG 57.327 50.000 0.00 0.00 0.00 4.49
6227 6302 3.771479 TGATGATAGCAGTCTGGACAACT 59.229 43.478 1.14 2.77 0.00 3.16
6841 6928 1.898574 GACACCAGCCCAACACAGG 60.899 63.158 0.00 0.00 0.00 4.00
6870 6957 7.110079 GCATTTTTCGTTTTCAGCACAATTTAC 59.890 33.333 0.00 0.00 0.00 2.01
6899 6986 7.743749 AGAGCATTAGATCAATCACATAACCT 58.256 34.615 0.00 0.00 30.99 3.50
7051 7476 4.464112 AGAGCGCAAAATTAACGACTTTC 58.536 39.130 11.47 0.00 0.00 2.62
7053 7478 4.689345 ACTAGAGCGCAAAATTAACGACTT 59.311 37.500 11.47 0.00 0.00 3.01
7088 7513 3.118038 ACCACACACACTTCATTGGTAGT 60.118 43.478 0.00 0.00 35.55 2.73
7089 7514 3.250762 CACCACACACACTTCATTGGTAG 59.749 47.826 0.00 0.00 35.55 3.18
7090 7515 3.210227 CACCACACACACTTCATTGGTA 58.790 45.455 0.00 0.00 35.55 3.25
7113 7538 5.851720 TGCTACCTTGAATTTCATGCAAAA 58.148 33.333 0.00 0.00 0.00 2.44
7169 7598 7.175467 TGAATCAGAAAGTGCACAGTTTGATAT 59.825 33.333 21.04 11.87 34.36 1.63
7239 7669 2.677003 CGCGGCAACCTGGTTAGTG 61.677 63.158 12.53 9.52 0.00 2.74
7253 7683 2.818274 GCCTAACTGGAACCGCGG 60.818 66.667 26.86 26.86 38.35 6.46
7261 7691 0.179073 CCGGATCACTGCCTAACTGG 60.179 60.000 0.00 0.00 39.35 4.00
7322 7752 4.005650 TGCAATATGGAGCTAAGCTATGC 58.994 43.478 2.99 2.99 39.88 3.14
7453 7885 3.149196 AGCCAGGCCAACAAATATATCG 58.851 45.455 8.22 0.00 0.00 2.92
7530 7996 1.191489 TCTGATCAACCACAGCGGGA 61.191 55.000 0.00 0.00 40.22 5.14
7573 8039 1.127951 CAACGGAAGAAATAGCGCGTT 59.872 47.619 8.43 3.54 0.00 4.84
7574 8040 0.719465 CAACGGAAGAAATAGCGCGT 59.281 50.000 8.43 0.00 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.