Multiple sequence alignment - TraesCS3A01G292200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G292200 chr3A 100.000 3604 0 0 1 3604 522189982 522186379 0.000000e+00 6656.0
1 TraesCS3A01G292200 chr3A 90.089 676 65 2 42 715 522231939 522231264 0.000000e+00 876.0
2 TraesCS3A01G292200 chr3A 82.645 242 39 3 718 956 505721506 505721265 1.010000e-50 211.0
3 TraesCS3A01G292200 chr3D 96.517 1780 57 3 954 2732 401884415 401882640 0.000000e+00 2939.0
4 TraesCS3A01G292200 chr3D 91.250 560 25 10 2726 3281 401882233 401881694 0.000000e+00 741.0
5 TraesCS3A01G292200 chr3D 93.571 280 17 1 3326 3604 401881695 401881416 2.000000e-112 416.0
6 TraesCS3A01G292200 chr3D 81.436 404 59 14 3080 3476 5534764 5535158 2.090000e-82 316.0
7 TraesCS3A01G292200 chr3D 89.189 148 13 3 3320 3465 401881744 401881890 7.950000e-42 182.0
8 TraesCS3A01G292200 chr3D 79.545 264 44 9 3080 3340 595107624 595107880 2.860000e-41 180.0
9 TraesCS3A01G292200 chr3D 82.576 132 22 1 1030 1161 170178807 170178677 8.180000e-22 115.0
10 TraesCS3A01G292200 chr3D 95.652 46 2 0 2996 3041 38184297 38184342 1.390000e-09 75.0
11 TraesCS3A01G292200 chr3B 94.217 1781 72 9 979 2731 527303081 527301304 0.000000e+00 2689.0
12 TraesCS3A01G292200 chr4A 89.676 678 63 4 40 714 130433269 130433942 0.000000e+00 857.0
13 TraesCS3A01G292200 chr4A 79.730 370 55 13 3117 3481 464694773 464695127 2.150000e-62 250.0
14 TraesCS3A01G292200 chr4A 89.116 147 12 4 3084 3229 342457013 342456870 2.860000e-41 180.0
15 TraesCS3A01G292200 chr6A 88.314 676 75 3 43 715 453379586 453380260 0.000000e+00 808.0
16 TraesCS3A01G292200 chr6A 86.197 681 87 6 42 718 453387376 453388053 0.000000e+00 730.0
17 TraesCS3A01G292200 chr6A 85.234 684 87 14 40 714 362315664 362316342 0.000000e+00 691.0
18 TraesCS3A01G292200 chr6A 84.840 686 89 11 42 715 362296018 362296700 0.000000e+00 676.0
19 TraesCS3A01G292200 chr6A 83.682 239 30 8 722 954 103249275 103249040 2.180000e-52 217.0
20 TraesCS3A01G292200 chr6A 89.610 77 7 1 3002 3078 52397708 52397633 2.960000e-16 97.1
21 TraesCS3A01G292200 chr6A 97.368 38 1 0 9 46 453387308 453387345 8.350000e-07 65.8
22 TraesCS3A01G292200 chr2A 85.546 678 91 6 42 715 233744707 233744033 0.000000e+00 702.0
23 TraesCS3A01G292200 chr2A 85.377 677 92 6 42 714 233728555 233727882 0.000000e+00 695.0
24 TraesCS3A01G292200 chr2A 85.610 410 51 7 3080 3487 419462573 419462170 1.200000e-114 424.0
25 TraesCS3A01G292200 chr2A 89.394 66 6 1 3011 3075 740856552 740856487 8.290000e-12 82.4
26 TraesCS3A01G292200 chr2A 92.308 39 3 0 13 51 417642761 417642723 5.030000e-04 56.5
27 TraesCS3A01G292200 chr5A 85.081 677 93 6 42 715 272318339 272317668 0.000000e+00 684.0
28 TraesCS3A01G292200 chr5A 83.193 238 37 3 722 956 103567007 103566770 7.840000e-52 215.0
29 TraesCS3A01G292200 chr1D 84.615 403 50 8 3080 3476 240611038 240611434 1.210000e-104 390.0
30 TraesCS3A01G292200 chr1D 83.058 242 38 3 718 956 231457175 231457416 2.180000e-52 217.0
31 TraesCS3A01G292200 chr1D 85.211 142 14 7 3320 3458 175763421 175763284 4.850000e-29 139.0
32 TraesCS3A01G292200 chr1D 90.361 83 8 0 2996 3078 240611174 240611092 3.800000e-20 110.0
33 TraesCS3A01G292200 chr1B 83.051 413 53 11 3080 3481 333600058 333599652 3.420000e-95 359.0
34 TraesCS3A01G292200 chr1B 89.041 73 7 1 3006 3078 333599933 333600004 4.960000e-14 89.8
35 TraesCS3A01G292200 chr7D 82.426 404 61 9 3080 3480 351652557 351652161 9.580000e-91 344.0
36 TraesCS3A01G292200 chr7D 83.761 234 32 5 725 954 625281252 625281483 2.180000e-52 217.0
37 TraesCS3A01G292200 chr7D 87.919 149 14 3 3084 3229 288465449 288465302 4.780000e-39 172.0
38 TraesCS3A01G292200 chr6B 82.512 406 54 15 3080 3476 43088129 43087732 1.240000e-89 340.0
39 TraesCS3A01G292200 chr6D 82.090 402 36 16 3080 3480 16601012 16600646 9.720000e-81 311.0
40 TraesCS3A01G292200 chr6D 76.215 391 75 14 3084 3465 144066431 144066050 1.320000e-44 191.0
41 TraesCS3A01G292200 chr6D 87.943 141 14 3 3084 3223 16600661 16600799 2.880000e-36 163.0
42 TraesCS3A01G292200 chr6D 87.050 139 15 3 3092 3229 330194710 330194574 1.730000e-33 154.0
43 TraesCS3A01G292200 chr6D 74.194 372 74 17 3090 3454 336843881 336844237 6.280000e-28 135.0
44 TraesCS3A01G292200 chr6D 86.842 114 12 2 3357 3470 330192997 330192887 1.360000e-24 124.0
45 TraesCS3A01G292200 chr6D 87.500 64 6 2 3136 3198 221215968 221215906 4.990000e-09 73.1
46 TraesCS3A01G292200 chr6D 83.333 78 10 2 3372 3446 148479540 148479617 6.460000e-08 69.4
47 TraesCS3A01G292200 chr2B 80.052 386 66 8 3102 3485 742823162 742823538 3.540000e-70 276.0
48 TraesCS3A01G292200 chr2B 87.879 99 12 0 1063 1161 371878269 371878367 2.270000e-22 117.0
49 TraesCS3A01G292200 chr1A 79.703 404 59 19 3080 3476 38740181 38740568 1.650000e-68 270.0
50 TraesCS3A01G292200 chr1A 82.258 248 41 3 722 966 585985625 585985378 1.010000e-50 211.0
51 TraesCS3A01G292200 chr1A 94.872 39 2 0 13 51 258451069 258451031 1.080000e-05 62.1
52 TraesCS3A01G292200 chr1A 94.872 39 2 0 13 51 258458629 258458591 1.080000e-05 62.1
53 TraesCS3A01G292200 chr4D 82.243 321 37 12 3159 3476 179848514 179848211 3.570000e-65 259.0
54 TraesCS3A01G292200 chr4D 76.517 379 68 18 3095 3465 363594740 363595105 1.710000e-43 187.0
55 TraesCS3A01G292200 chr2D 84.898 245 30 6 718 957 627585022 627584780 1.290000e-59 241.0
56 TraesCS3A01G292200 chr2D 83.966 237 33 5 722 954 103026743 103026508 4.680000e-54 222.0
57 TraesCS3A01G292200 chr7A 86.567 201 21 4 3281 3476 324938864 324939063 2.180000e-52 217.0
58 TraesCS3A01G292200 chr5D 82.857 245 38 4 722 963 445036513 445036270 2.180000e-52 217.0
59 TraesCS3A01G292200 chr5D 82.114 123 19 3 3100 3220 473485213 473485334 6.370000e-18 102.0
60 TraesCS3A01G292200 chr7B 79.182 269 46 9 3178 3440 434940253 434939989 1.030000e-40 178.0
61 TraesCS3A01G292200 chr5B 90.441 136 12 1 3320 3454 641024028 641024163 1.030000e-40 178.0
62 TraesCS3A01G292200 chr5B 79.487 78 15 1 3002 3078 391639008 391638931 2.000000e-03 54.7
63 TraesCS3A01G292200 chr4B 89.362 141 11 4 3084 3223 322769836 322769699 1.330000e-39 174.0
64 TraesCS3A01G292200 chr4B 89.362 141 10 5 3084 3222 322691328 322691191 4.780000e-39 172.0
65 TraesCS3A01G292200 chr4B 82.902 193 23 7 3080 3271 71595586 71595403 8.010000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G292200 chr3A 522186379 522189982 3603 True 6656.000000 6656 100.000000 1 3604 1 chr3A.!!$R2 3603
1 TraesCS3A01G292200 chr3A 522231264 522231939 675 True 876.000000 876 90.089000 42 715 1 chr3A.!!$R3 673
2 TraesCS3A01G292200 chr3D 401881416 401884415 2999 True 1365.333333 2939 93.779333 954 3604 3 chr3D.!!$R2 2650
3 TraesCS3A01G292200 chr3B 527301304 527303081 1777 True 2689.000000 2689 94.217000 979 2731 1 chr3B.!!$R1 1752
4 TraesCS3A01G292200 chr4A 130433269 130433942 673 False 857.000000 857 89.676000 40 714 1 chr4A.!!$F1 674
5 TraesCS3A01G292200 chr6A 453379586 453380260 674 False 808.000000 808 88.314000 43 715 1 chr6A.!!$F3 672
6 TraesCS3A01G292200 chr6A 362315664 362316342 678 False 691.000000 691 85.234000 40 714 1 chr6A.!!$F2 674
7 TraesCS3A01G292200 chr6A 362296018 362296700 682 False 676.000000 676 84.840000 42 715 1 chr6A.!!$F1 673
8 TraesCS3A01G292200 chr6A 453387308 453388053 745 False 397.900000 730 91.782500 9 718 2 chr6A.!!$F4 709
9 TraesCS3A01G292200 chr2A 233744033 233744707 674 True 702.000000 702 85.546000 42 715 1 chr2A.!!$R2 673
10 TraesCS3A01G292200 chr2A 233727882 233728555 673 True 695.000000 695 85.377000 42 714 1 chr2A.!!$R1 672
11 TraesCS3A01G292200 chr5A 272317668 272318339 671 True 684.000000 684 85.081000 42 715 1 chr5A.!!$R2 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 889 0.031212 AAAATGGGCCGGGAATGGAT 60.031 50.0 2.18 0.0 0.0 3.41 F
844 900 0.107214 GGAATGGATTGACAGGCGGA 60.107 55.0 0.00 0.0 0.0 5.54 F
880 936 0.179094 TCCATTTAGATCGGCGCGTT 60.179 50.0 8.43 0.0 0.0 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2209 0.594028 CGGGATGGACGACATACACG 60.594 60.000 8.83 6.52 42.62 4.49 R
2345 2404 0.860533 CGTTGGTGGCAATTTGCTTG 59.139 50.000 20.06 0.63 44.28 4.01 R
2862 3362 1.153549 CAGAGAGTGGCGCTTACCC 60.154 63.158 7.64 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 120 1.435577 GCTAAAAACGAGGAAGGCGA 58.564 50.000 0.00 0.00 0.00 5.54
212 259 0.621862 AGGGGATTTTCGGAGCCTCT 60.622 55.000 0.00 0.00 0.00 3.69
306 353 3.561725 GCTGAGAGTAGAGAAGAGAGAGC 59.438 52.174 0.00 0.00 0.00 4.09
311 360 0.548989 TAGAGAAGAGAGAGCGGCCT 59.451 55.000 0.00 0.00 0.00 5.19
312 361 0.548989 AGAGAAGAGAGAGCGGCCTA 59.451 55.000 0.00 0.00 0.00 3.93
323 372 0.250166 AGCGGCCTAACGTCTGTTTT 60.250 50.000 0.00 0.00 39.54 2.43
354 403 2.353839 CGTCCGACGTTTGACCGT 60.354 61.111 12.91 0.00 45.18 4.83
407 458 0.320334 TCAAACGAGCTCCGAATGCA 60.320 50.000 8.47 0.00 41.76 3.96
421 472 3.058450 CGAATGCAATGAAACTTGGCAA 58.942 40.909 0.00 0.00 0.00 4.52
450 502 5.237779 CCTACTGACAATAAAACAACACCGT 59.762 40.000 0.00 0.00 0.00 4.83
462 514 1.865970 CAACACCGTACGCCAACTTTA 59.134 47.619 10.49 0.00 0.00 1.85
484 536 7.475137 TTAATCCCATTCCGAGAACATTTTT 57.525 32.000 0.00 0.00 0.00 1.94
570 624 1.974957 TGGACGATGGAAAGAACTGGA 59.025 47.619 0.00 0.00 0.00 3.86
586 640 2.356780 GGAAGACCCGGACGGATGT 61.357 63.158 13.13 1.99 37.50 3.06
679 735 7.598278 ACAAGGCAACAATAACGAATAATTGA 58.402 30.769 2.30 0.00 41.41 2.57
690 746 8.786826 ATAACGAATAATTGAAAGACACCTGA 57.213 30.769 0.00 0.00 0.00 3.86
718 774 2.431942 ACGAGGCGTTACAAGCGG 60.432 61.111 0.00 0.00 36.35 5.52
722 778 3.358707 GGCGTTACAAGCGGCCAA 61.359 61.111 2.24 0.00 46.90 4.52
723 779 2.696759 GGCGTTACAAGCGGCCAAT 61.697 57.895 2.24 0.00 46.90 3.16
724 780 1.226295 GCGTTACAAGCGGCCAATC 60.226 57.895 2.24 0.00 0.00 2.67
725 781 1.427819 CGTTACAAGCGGCCAATCC 59.572 57.895 2.24 0.00 0.00 3.01
726 782 1.302383 CGTTACAAGCGGCCAATCCA 61.302 55.000 2.24 0.00 34.01 3.41
727 783 0.885196 GTTACAAGCGGCCAATCCAA 59.115 50.000 2.24 0.00 34.01 3.53
728 784 1.476488 GTTACAAGCGGCCAATCCAAT 59.524 47.619 2.24 0.00 34.01 3.16
729 785 1.102154 TACAAGCGGCCAATCCAATG 58.898 50.000 2.24 0.00 34.01 2.82
730 786 0.899717 ACAAGCGGCCAATCCAATGT 60.900 50.000 2.24 0.00 34.01 2.71
731 787 0.458889 CAAGCGGCCAATCCAATGTG 60.459 55.000 2.24 0.00 34.01 3.21
732 788 2.202783 GCGGCCAATCCAATGTGC 60.203 61.111 2.24 0.00 34.01 4.57
733 789 2.495866 CGGCCAATCCAATGTGCC 59.504 61.111 2.24 0.00 38.74 5.01
734 790 2.349672 CGGCCAATCCAATGTGCCA 61.350 57.895 2.24 0.00 42.27 4.92
735 791 1.218854 GGCCAATCCAATGTGCCAC 59.781 57.895 0.00 0.00 41.76 5.01
736 792 1.218854 GCCAATCCAATGTGCCACC 59.781 57.895 0.00 0.00 0.00 4.61
737 793 1.543065 GCCAATCCAATGTGCCACCA 61.543 55.000 0.00 0.00 0.00 4.17
738 794 0.975135 CCAATCCAATGTGCCACCAA 59.025 50.000 0.00 0.00 0.00 3.67
739 795 1.338011 CCAATCCAATGTGCCACCAAC 60.338 52.381 0.00 0.00 0.00 3.77
740 796 1.619827 CAATCCAATGTGCCACCAACT 59.380 47.619 0.00 0.00 0.00 3.16
741 797 2.824936 CAATCCAATGTGCCACCAACTA 59.175 45.455 0.00 0.00 0.00 2.24
742 798 2.198827 TCCAATGTGCCACCAACTAG 57.801 50.000 0.00 0.00 0.00 2.57
743 799 0.527565 CCAATGTGCCACCAACTAGC 59.472 55.000 0.00 0.00 0.00 3.42
744 800 1.246649 CAATGTGCCACCAACTAGCA 58.753 50.000 0.00 0.00 0.00 3.49
745 801 1.200716 CAATGTGCCACCAACTAGCAG 59.799 52.381 0.00 0.00 37.15 4.24
746 802 0.322816 ATGTGCCACCAACTAGCAGG 60.323 55.000 0.00 0.00 37.15 4.85
747 803 2.034066 TGCCACCAACTAGCAGGC 59.966 61.111 0.00 0.00 45.41 4.85
748 804 2.751837 GCCACCAACTAGCAGGCC 60.752 66.667 0.00 0.00 39.42 5.19
749 805 2.044946 CCACCAACTAGCAGGCCC 60.045 66.667 0.00 0.00 0.00 5.80
750 806 2.436646 CACCAACTAGCAGGCCCG 60.437 66.667 0.00 0.00 0.00 6.13
751 807 3.717294 ACCAACTAGCAGGCCCGG 61.717 66.667 0.00 0.00 0.00 5.73
752 808 3.717294 CCAACTAGCAGGCCCGGT 61.717 66.667 0.00 0.00 0.00 5.28
753 809 2.436646 CAACTAGCAGGCCCGGTG 60.437 66.667 0.00 0.00 0.00 4.94
754 810 2.606519 AACTAGCAGGCCCGGTGA 60.607 61.111 0.00 0.00 0.00 4.02
755 811 2.660064 AACTAGCAGGCCCGGTGAG 61.660 63.158 0.00 0.00 0.00 3.51
756 812 2.759973 CTAGCAGGCCCGGTGAGA 60.760 66.667 0.00 0.00 0.00 3.27
757 813 2.284331 TAGCAGGCCCGGTGAGAA 60.284 61.111 0.00 0.00 0.00 2.87
758 814 1.899437 CTAGCAGGCCCGGTGAGAAA 61.899 60.000 0.00 0.00 0.00 2.52
759 815 1.485294 TAGCAGGCCCGGTGAGAAAA 61.485 55.000 0.00 0.00 0.00 2.29
760 816 2.335712 GCAGGCCCGGTGAGAAAAG 61.336 63.158 0.00 0.00 0.00 2.27
761 817 1.374947 CAGGCCCGGTGAGAAAAGA 59.625 57.895 0.00 0.00 0.00 2.52
762 818 0.674895 CAGGCCCGGTGAGAAAAGAG 60.675 60.000 0.00 0.00 0.00 2.85
763 819 0.836400 AGGCCCGGTGAGAAAAGAGA 60.836 55.000 0.00 0.00 0.00 3.10
764 820 0.673956 GGCCCGGTGAGAAAAGAGAC 60.674 60.000 0.00 0.00 0.00 3.36
765 821 1.014564 GCCCGGTGAGAAAAGAGACG 61.015 60.000 0.00 0.00 0.00 4.18
766 822 0.601558 CCCGGTGAGAAAAGAGACGA 59.398 55.000 0.00 0.00 0.00 4.20
767 823 1.402984 CCCGGTGAGAAAAGAGACGAG 60.403 57.143 0.00 0.00 0.00 4.18
768 824 1.341606 CGGTGAGAAAAGAGACGAGC 58.658 55.000 0.00 0.00 0.00 5.03
769 825 1.341606 GGTGAGAAAAGAGACGAGCG 58.658 55.000 0.00 0.00 0.00 5.03
770 826 0.711118 GTGAGAAAAGAGACGAGCGC 59.289 55.000 0.00 0.00 0.00 5.92
771 827 0.313987 TGAGAAAAGAGACGAGCGCA 59.686 50.000 11.47 0.00 0.00 6.09
772 828 1.067565 TGAGAAAAGAGACGAGCGCAT 60.068 47.619 11.47 0.00 0.00 4.73
773 829 2.163613 TGAGAAAAGAGACGAGCGCATA 59.836 45.455 11.47 0.00 0.00 3.14
774 830 2.531206 AGAAAAGAGACGAGCGCATAC 58.469 47.619 11.47 0.00 0.00 2.39
775 831 2.094700 AGAAAAGAGACGAGCGCATACA 60.095 45.455 11.47 0.00 0.00 2.29
776 832 1.630148 AAAGAGACGAGCGCATACAC 58.370 50.000 11.47 0.00 0.00 2.90
777 833 0.526211 AAGAGACGAGCGCATACACA 59.474 50.000 11.47 0.00 0.00 3.72
778 834 0.741326 AGAGACGAGCGCATACACAT 59.259 50.000 11.47 0.00 0.00 3.21
779 835 1.124462 GAGACGAGCGCATACACATC 58.876 55.000 11.47 0.00 0.00 3.06
780 836 0.249073 AGACGAGCGCATACACATCC 60.249 55.000 11.47 0.00 0.00 3.51
781 837 1.540607 GACGAGCGCATACACATCCG 61.541 60.000 11.47 1.00 0.00 4.18
782 838 1.588932 CGAGCGCATACACATCCGT 60.589 57.895 11.47 0.00 0.00 4.69
783 839 1.540607 CGAGCGCATACACATCCGTC 61.541 60.000 11.47 0.00 0.00 4.79
784 840 0.249073 GAGCGCATACACATCCGTCT 60.249 55.000 11.47 0.00 0.00 4.18
785 841 0.175760 AGCGCATACACATCCGTCTT 59.824 50.000 11.47 0.00 0.00 3.01
786 842 0.301687 GCGCATACACATCCGTCTTG 59.698 55.000 0.30 0.00 0.00 3.02
787 843 1.640428 CGCATACACATCCGTCTTGT 58.360 50.000 0.00 0.00 0.00 3.16
792 848 2.445274 CACATCCGTCTTGTGTCCG 58.555 57.895 0.00 0.00 39.66 4.79
793 849 1.374252 ACATCCGTCTTGTGTCCGC 60.374 57.895 0.00 0.00 0.00 5.54
794 850 2.126071 ATCCGTCTTGTGTCCGCG 60.126 61.111 0.00 0.00 0.00 6.46
812 868 3.564027 CCGACGCAAATCCGGCTC 61.564 66.667 0.00 0.00 36.62 4.70
813 869 2.813474 CGACGCAAATCCGGCTCA 60.813 61.111 0.00 0.00 33.03 4.26
814 870 2.387445 CGACGCAAATCCGGCTCAA 61.387 57.895 0.00 0.00 33.03 3.02
815 871 1.873165 GACGCAAATCCGGCTCAAA 59.127 52.632 0.00 0.00 32.31 2.69
816 872 0.239879 GACGCAAATCCGGCTCAAAA 59.760 50.000 0.00 0.00 32.31 2.44
817 873 0.671251 ACGCAAATCCGGCTCAAAAA 59.329 45.000 0.00 0.00 0.00 1.94
818 874 1.272212 ACGCAAATCCGGCTCAAAAAT 59.728 42.857 0.00 0.00 0.00 1.82
819 875 1.655099 CGCAAATCCGGCTCAAAAATG 59.345 47.619 0.00 0.00 0.00 2.32
820 876 2.001872 GCAAATCCGGCTCAAAAATGG 58.998 47.619 0.00 0.00 0.00 3.16
821 877 2.620242 CAAATCCGGCTCAAAAATGGG 58.380 47.619 0.00 0.00 0.00 4.00
822 878 0.536724 AATCCGGCTCAAAAATGGGC 59.463 50.000 0.00 0.00 0.00 5.36
823 879 1.329913 ATCCGGCTCAAAAATGGGCC 61.330 55.000 9.70 9.70 41.02 5.80
825 881 2.578664 GGCTCAAAAATGGGCCGG 59.421 61.111 3.61 0.00 35.08 6.13
826 882 2.578664 GCTCAAAAATGGGCCGGG 59.421 61.111 2.18 0.00 0.00 5.73
827 883 1.981853 GCTCAAAAATGGGCCGGGA 60.982 57.895 2.18 0.00 0.00 5.14
828 884 1.540435 GCTCAAAAATGGGCCGGGAA 61.540 55.000 2.18 0.00 0.00 3.97
829 885 1.194218 CTCAAAAATGGGCCGGGAAT 58.806 50.000 2.18 0.00 0.00 3.01
830 886 0.901124 TCAAAAATGGGCCGGGAATG 59.099 50.000 2.18 0.00 0.00 2.67
831 887 0.107752 CAAAAATGGGCCGGGAATGG 60.108 55.000 2.18 0.00 0.00 3.16
832 888 0.252467 AAAAATGGGCCGGGAATGGA 60.252 50.000 2.18 0.00 0.00 3.41
833 889 0.031212 AAAATGGGCCGGGAATGGAT 60.031 50.000 2.18 0.00 0.00 3.41
834 890 0.031212 AAATGGGCCGGGAATGGATT 60.031 50.000 2.18 0.00 0.00 3.01
835 891 0.760189 AATGGGCCGGGAATGGATTG 60.760 55.000 2.18 0.00 0.00 2.67
836 892 1.654137 ATGGGCCGGGAATGGATTGA 61.654 55.000 2.18 0.00 0.00 2.57
837 893 1.828224 GGGCCGGGAATGGATTGAC 60.828 63.158 2.18 0.00 0.00 3.18
838 894 1.077068 GGCCGGGAATGGATTGACA 60.077 57.895 2.18 0.00 0.00 3.58
839 895 1.103398 GGCCGGGAATGGATTGACAG 61.103 60.000 2.18 0.00 0.00 3.51
840 896 1.103398 GCCGGGAATGGATTGACAGG 61.103 60.000 2.18 0.00 0.00 4.00
841 897 1.103398 CCGGGAATGGATTGACAGGC 61.103 60.000 0.00 0.00 0.00 4.85
842 898 1.439353 CGGGAATGGATTGACAGGCG 61.439 60.000 0.00 0.00 0.00 5.52
843 899 1.103398 GGGAATGGATTGACAGGCGG 61.103 60.000 0.00 0.00 0.00 6.13
844 900 0.107214 GGAATGGATTGACAGGCGGA 60.107 55.000 0.00 0.00 0.00 5.54
845 901 1.017387 GAATGGATTGACAGGCGGAC 58.983 55.000 0.00 0.00 0.00 4.79
846 902 0.744414 AATGGATTGACAGGCGGACG 60.744 55.000 0.00 0.00 0.00 4.79
847 903 1.613317 ATGGATTGACAGGCGGACGA 61.613 55.000 0.00 0.00 0.00 4.20
848 904 1.079405 GGATTGACAGGCGGACGAA 60.079 57.895 0.00 0.00 0.00 3.85
849 905 0.672401 GGATTGACAGGCGGACGAAA 60.672 55.000 0.00 0.00 0.00 3.46
850 906 0.721718 GATTGACAGGCGGACGAAAG 59.278 55.000 0.00 0.00 0.00 2.62
851 907 1.298859 ATTGACAGGCGGACGAAAGC 61.299 55.000 0.00 0.00 0.00 3.51
852 908 2.357034 GACAGGCGGACGAAAGCA 60.357 61.111 0.00 0.00 34.54 3.91
853 909 1.959226 GACAGGCGGACGAAAGCAA 60.959 57.895 0.00 0.00 34.54 3.91
854 910 1.503818 GACAGGCGGACGAAAGCAAA 61.504 55.000 0.00 0.00 34.54 3.68
855 911 1.082104 CAGGCGGACGAAAGCAAAC 60.082 57.895 0.00 0.00 34.54 2.93
856 912 2.127383 GGCGGACGAAAGCAAACG 60.127 61.111 0.00 0.00 34.54 3.60
857 913 2.795389 GCGGACGAAAGCAAACGC 60.795 61.111 0.00 0.00 40.19 4.84
858 914 2.127383 CGGACGAAAGCAAACGCC 60.127 61.111 0.00 0.00 0.00 5.68
859 915 2.254350 GGACGAAAGCAAACGCCC 59.746 61.111 0.00 0.00 0.00 6.13
860 916 2.127383 GACGAAAGCAAACGCCCG 60.127 61.111 0.00 0.00 0.00 6.13
861 917 2.888998 GACGAAAGCAAACGCCCGT 61.889 57.895 0.00 0.00 34.58 5.28
862 918 2.127383 CGAAAGCAAACGCCCGTC 60.127 61.111 0.00 0.00 0.00 4.79
863 919 2.254350 GAAAGCAAACGCCCGTCC 59.746 61.111 0.00 0.00 0.00 4.79
864 920 2.517402 AAAGCAAACGCCCGTCCA 60.517 55.556 0.00 0.00 0.00 4.02
865 921 1.862602 GAAAGCAAACGCCCGTCCAT 61.863 55.000 0.00 0.00 0.00 3.41
866 922 1.460273 AAAGCAAACGCCCGTCCATT 61.460 50.000 0.00 0.00 0.00 3.16
867 923 1.460273 AAGCAAACGCCCGTCCATTT 61.460 50.000 0.00 0.00 0.00 2.32
868 924 0.606944 AGCAAACGCCCGTCCATTTA 60.607 50.000 0.00 0.00 0.00 1.40
869 925 0.179174 GCAAACGCCCGTCCATTTAG 60.179 55.000 0.00 0.00 0.00 1.85
870 926 1.444836 CAAACGCCCGTCCATTTAGA 58.555 50.000 0.00 0.00 0.00 2.10
871 927 2.014128 CAAACGCCCGTCCATTTAGAT 58.986 47.619 0.00 0.00 0.00 1.98
872 928 1.949465 AACGCCCGTCCATTTAGATC 58.051 50.000 0.00 0.00 0.00 2.75
873 929 0.249322 ACGCCCGTCCATTTAGATCG 60.249 55.000 0.00 0.00 0.00 3.69
874 930 0.944311 CGCCCGTCCATTTAGATCGG 60.944 60.000 0.00 0.00 40.72 4.18
875 931 1.228657 GCCCGTCCATTTAGATCGGC 61.229 60.000 0.00 0.00 39.87 5.54
876 932 0.944311 CCCGTCCATTTAGATCGGCG 60.944 60.000 0.00 0.00 39.87 6.46
877 933 1.557443 CCGTCCATTTAGATCGGCGC 61.557 60.000 0.00 0.00 35.01 6.53
878 934 1.853319 GTCCATTTAGATCGGCGCG 59.147 57.895 0.00 0.00 0.00 6.86
879 935 0.874607 GTCCATTTAGATCGGCGCGT 60.875 55.000 8.43 0.00 0.00 6.01
880 936 0.179094 TCCATTTAGATCGGCGCGTT 60.179 50.000 8.43 0.00 0.00 4.84
881 937 0.655733 CCATTTAGATCGGCGCGTTT 59.344 50.000 8.43 0.00 0.00 3.60
882 938 1.594518 CCATTTAGATCGGCGCGTTTG 60.595 52.381 8.43 0.00 0.00 2.93
883 939 0.655733 ATTTAGATCGGCGCGTTTGG 59.344 50.000 8.43 0.00 0.00 3.28
884 940 0.671163 TTTAGATCGGCGCGTTTGGT 60.671 50.000 8.43 0.00 0.00 3.67
885 941 1.079875 TTAGATCGGCGCGTTTGGTC 61.080 55.000 8.43 3.55 0.00 4.02
886 942 2.215465 TAGATCGGCGCGTTTGGTCA 62.215 55.000 8.43 0.00 0.00 4.02
887 943 2.666862 ATCGGCGCGTTTGGTCAA 60.667 55.556 8.43 0.00 0.00 3.18
888 944 2.827959 GATCGGCGCGTTTGGTCAAC 62.828 60.000 8.43 0.00 0.00 3.18
889 945 3.645975 CGGCGCGTTTGGTCAACT 61.646 61.111 8.43 0.00 32.53 3.16
890 946 2.719354 GGCGCGTTTGGTCAACTT 59.281 55.556 8.43 0.00 32.53 2.66
891 947 1.065109 GGCGCGTTTGGTCAACTTT 59.935 52.632 8.43 0.00 32.53 2.66
892 948 0.526739 GGCGCGTTTGGTCAACTTTT 60.527 50.000 8.43 0.00 32.53 2.27
893 949 1.273688 GCGCGTTTGGTCAACTTTTT 58.726 45.000 8.43 0.00 32.53 1.94
921 977 2.489971 GTTGATCCAAACGGACAGTCA 58.510 47.619 2.17 0.00 34.62 3.41
922 978 3.074412 GTTGATCCAAACGGACAGTCAT 58.926 45.455 2.17 0.00 34.62 3.06
923 979 2.698803 TGATCCAAACGGACAGTCATG 58.301 47.619 2.17 0.00 34.62 3.07
924 980 2.009774 GATCCAAACGGACAGTCATGG 58.990 52.381 2.17 5.36 39.65 3.66
925 981 1.052617 TCCAAACGGACAGTCATGGA 58.947 50.000 2.17 7.59 42.73 3.41
926 982 1.156736 CCAAACGGACAGTCATGGAC 58.843 55.000 2.17 0.00 40.31 4.02
927 983 0.790207 CAAACGGACAGTCATGGACG 59.210 55.000 2.17 0.00 37.67 4.79
928 984 0.677288 AAACGGACAGTCATGGACGA 59.323 50.000 2.17 0.00 37.67 4.20
929 985 0.677288 AACGGACAGTCATGGACGAA 59.323 50.000 2.17 0.00 37.67 3.85
930 986 0.677288 ACGGACAGTCATGGACGAAA 59.323 50.000 2.17 0.00 37.67 3.46
931 987 1.275291 ACGGACAGTCATGGACGAAAT 59.725 47.619 2.17 0.00 37.67 2.17
932 988 1.660607 CGGACAGTCATGGACGAAATG 59.339 52.381 2.17 0.00 37.67 2.32
933 989 2.009774 GGACAGTCATGGACGAAATGG 58.990 52.381 2.17 0.00 37.67 3.16
934 990 2.009774 GACAGTCATGGACGAAATGGG 58.990 52.381 0.00 0.00 37.67 4.00
935 991 1.351017 ACAGTCATGGACGAAATGGGT 59.649 47.619 0.00 0.00 37.67 4.51
936 992 2.569853 ACAGTCATGGACGAAATGGGTA 59.430 45.455 0.00 0.00 37.67 3.69
937 993 3.198068 CAGTCATGGACGAAATGGGTAG 58.802 50.000 0.00 0.00 37.67 3.18
938 994 1.940613 GTCATGGACGAAATGGGTAGC 59.059 52.381 0.00 0.00 0.00 3.58
939 995 1.134220 TCATGGACGAAATGGGTAGCC 60.134 52.381 3.29 3.29 0.00 3.93
940 996 0.182775 ATGGACGAAATGGGTAGCCC 59.817 55.000 8.85 0.62 45.71 5.19
950 1006 3.496675 GGGTAGCCCATTGGAGTTC 57.503 57.895 3.62 0.00 44.65 3.01
951 1007 0.919710 GGGTAGCCCATTGGAGTTCT 59.080 55.000 3.62 0.00 44.65 3.01
952 1008 1.134068 GGGTAGCCCATTGGAGTTCTC 60.134 57.143 3.62 0.00 44.65 2.87
1007 1063 3.380004 ACGGCAGAGAGAGTCAAAGATAG 59.620 47.826 0.00 0.00 0.00 2.08
1015 1071 5.492895 AGAGAGTCAAAGATAGACACGAGA 58.507 41.667 0.00 0.00 38.46 4.04
1019 1075 4.673061 AGTCAAAGATAGACACGAGAAGCG 60.673 45.833 0.00 0.00 38.46 4.68
1129 1185 4.143333 TACGCCGCTCAGGGAAGC 62.143 66.667 0.00 0.00 41.48 3.86
1188 1244 2.279120 GCCTCTGCATCCGACGAG 60.279 66.667 0.00 0.00 37.47 4.18
1255 1311 5.152623 TCTCGATTTCTTGGTCTGATTGT 57.847 39.130 0.00 0.00 0.00 2.71
1305 1361 1.340889 TGCTCCAACCACTCAATTTGC 59.659 47.619 0.00 0.00 0.00 3.68
1314 1370 3.647590 ACCACTCAATTTGCTTGGGATTT 59.352 39.130 16.19 0.00 37.55 2.17
1366 1424 1.000359 CCCGCCCCTTCCATCTTTT 60.000 57.895 0.00 0.00 0.00 2.27
1478 1536 1.334869 GTGGTGGCATATTAGCACTGC 59.665 52.381 0.00 0.00 40.92 4.40
1602 1660 7.633621 AGATAACATCAATTGCTAATGTGTCG 58.366 34.615 10.93 0.00 34.03 4.35
1650 1708 5.173854 GCTAGAATGTGCAACTTGTGTTTTC 59.826 40.000 0.00 0.00 38.04 2.29
1709 1767 7.724305 TTCTGCATAAGTTAGAACGTTCTTT 57.276 32.000 33.82 23.87 38.70 2.52
1941 2000 4.025313 GCTATCCGCAAACTGAAGAAGATC 60.025 45.833 0.00 0.00 38.92 2.75
2159 2218 3.314541 AAAGGAGACCACGTGTATGTC 57.685 47.619 15.65 14.44 0.00 3.06
2285 2344 1.656652 ACATAGAGGTTCATGTGCGC 58.343 50.000 0.00 0.00 34.15 6.09
2345 2404 1.977854 ACCAAAGGAAAATCTTGGGGC 59.022 47.619 5.16 0.00 41.17 5.80
2440 2499 6.811665 CACATTGAAGAATGAAATGCTGACAT 59.188 34.615 0.00 0.00 41.49 3.06
2565 2644 4.122776 CAAGGAGGTGAAGTCATATTCCG 58.877 47.826 0.00 0.00 31.84 4.30
2582 2661 8.304596 TCATATTCCGTATCCAAGCTACTTAAG 58.695 37.037 0.00 0.00 0.00 1.85
2679 2764 2.611800 TGCCAGGGAGTGCTGGAT 60.612 61.111 0.00 0.00 43.08 3.41
2704 2789 5.313520 GGCAATTTGGCATTAATTTTGCT 57.686 34.783 17.26 0.00 43.14 3.91
2798 3296 6.607600 AGGCCTTTATTTGGAATTCCTTCTAC 59.392 38.462 24.73 6.04 36.82 2.59
2833 3333 4.446371 CTGCTTTCTATGTGGAGGTTAGG 58.554 47.826 0.00 0.00 0.00 2.69
2841 3341 4.559862 ATGTGGAGGTTAGGTTCTTCTG 57.440 45.455 0.00 0.00 0.00 3.02
2906 3406 6.127619 CCATTCTGGTGGACTTTTCTTAATCC 60.128 42.308 0.00 0.00 42.02 3.01
2923 3423 9.743057 TTCTTAATCCAACTTATGTGTGTTTTG 57.257 29.630 0.00 0.00 0.00 2.44
2924 3424 7.865385 TCTTAATCCAACTTATGTGTGTTTTGC 59.135 33.333 0.00 0.00 0.00 3.68
2939 3439 7.110511 GTGTGTTTTGCGATTGTTAAAAGAAG 58.889 34.615 0.00 0.00 0.00 2.85
2944 3444 9.914923 GTTTTGCGATTGTTAAAAGAAGAAAAT 57.085 25.926 0.00 0.00 0.00 1.82
2982 3482 2.810439 GCTATCCAGCTCAGGTAGTG 57.190 55.000 3.18 0.00 44.93 2.74
2983 3483 2.035632 GCTATCCAGCTCAGGTAGTGT 58.964 52.381 3.18 0.00 44.93 3.55
2984 3484 3.223435 GCTATCCAGCTCAGGTAGTGTA 58.777 50.000 3.18 0.00 44.93 2.90
2985 3485 3.004944 GCTATCCAGCTCAGGTAGTGTAC 59.995 52.174 3.18 0.00 44.93 2.90
2986 3486 2.901338 TCCAGCTCAGGTAGTGTACT 57.099 50.000 0.00 0.00 0.00 2.73
2994 3494 2.042026 TCAGGTAGTGTACTGGGCACTA 59.958 50.000 8.74 8.74 44.41 2.74
3025 3525 3.562141 CGAAACAGAACATGGGTGTACAA 59.438 43.478 0.00 0.00 37.67 2.41
3053 3553 2.905736 CCCAGGTTTGACATCCCAAAAT 59.094 45.455 0.00 0.00 37.72 1.82
3056 3556 4.996758 CCAGGTTTGACATCCCAAAATTTC 59.003 41.667 0.00 0.00 37.72 2.17
3174 3675 9.540538 TTCTGAAATTTTGGGATATCAAACCTA 57.459 29.630 4.83 0.00 36.49 3.08
3217 3718 2.818921 TCAGTTTCATGGGGAAATGGG 58.181 47.619 0.00 0.00 46.55 4.00
3219 3720 2.234414 CAGTTTCATGGGGAAATGGGTG 59.766 50.000 0.00 0.00 46.55 4.61
3281 3782 9.928618 TCCTATGTATGGAAAACATTATTTGGA 57.071 29.630 0.00 0.00 41.03 3.53
3289 3790 8.746052 TGGAAAACATTATTTGGATAGATCGT 57.254 30.769 0.00 0.00 0.00 3.73
3290 3791 9.839817 TGGAAAACATTATTTGGATAGATCGTA 57.160 29.630 0.00 0.00 0.00 3.43
3295 3796 9.996554 AACATTATTTGGATAGATCGTATGTCA 57.003 29.630 0.00 0.00 0.00 3.58
3296 3797 9.645059 ACATTATTTGGATAGATCGTATGTCAG 57.355 33.333 0.00 0.00 0.00 3.51
3297 3798 9.860898 CATTATTTGGATAGATCGTATGTCAGA 57.139 33.333 0.00 0.00 0.00 3.27
3298 3799 9.862371 ATTATTTGGATAGATCGTATGTCAGAC 57.138 33.333 0.00 0.00 0.00 3.51
3299 3800 6.961360 TTTGGATAGATCGTATGTCAGACT 57.039 37.500 1.31 0.00 0.00 3.24
3300 3801 5.948992 TGGATAGATCGTATGTCAGACTG 57.051 43.478 1.31 0.00 0.00 3.51
3301 3802 5.377478 TGGATAGATCGTATGTCAGACTGT 58.623 41.667 1.59 0.00 0.00 3.55
3302 3803 6.531021 TGGATAGATCGTATGTCAGACTGTA 58.469 40.000 1.59 0.00 0.00 2.74
3303 3804 7.168905 TGGATAGATCGTATGTCAGACTGTAT 58.831 38.462 1.59 1.65 0.00 2.29
3304 3805 7.665974 TGGATAGATCGTATGTCAGACTGTATT 59.334 37.037 1.59 0.00 0.00 1.89
3305 3806 8.516234 GGATAGATCGTATGTCAGACTGTATTT 58.484 37.037 1.59 0.00 0.00 1.40
3306 3807 9.900710 GATAGATCGTATGTCAGACTGTATTTT 57.099 33.333 1.59 0.00 0.00 1.82
3307 3808 9.900710 ATAGATCGTATGTCAGACTGTATTTTC 57.099 33.333 1.59 0.00 0.00 2.29
3308 3809 8.001881 AGATCGTATGTCAGACTGTATTTTCT 57.998 34.615 1.59 0.00 0.00 2.52
3309 3810 8.470805 AGATCGTATGTCAGACTGTATTTTCTT 58.529 33.333 1.59 0.00 0.00 2.52
3310 3811 8.635877 ATCGTATGTCAGACTGTATTTTCTTC 57.364 34.615 1.59 0.00 0.00 2.87
3311 3812 6.745907 TCGTATGTCAGACTGTATTTTCTTCG 59.254 38.462 1.59 0.00 0.00 3.79
3312 3813 5.786401 ATGTCAGACTGTATTTTCTTCGC 57.214 39.130 1.59 0.00 0.00 4.70
3313 3814 3.994392 TGTCAGACTGTATTTTCTTCGCC 59.006 43.478 1.59 0.00 0.00 5.54
3314 3815 3.060895 GTCAGACTGTATTTTCTTCGCCG 59.939 47.826 1.59 0.00 0.00 6.46
3315 3816 2.993899 CAGACTGTATTTTCTTCGCCGT 59.006 45.455 0.00 0.00 0.00 5.68
3316 3817 2.993899 AGACTGTATTTTCTTCGCCGTG 59.006 45.455 0.00 0.00 0.00 4.94
3317 3818 2.073816 ACTGTATTTTCTTCGCCGTGG 58.926 47.619 0.00 0.00 0.00 4.94
3318 3819 2.289195 ACTGTATTTTCTTCGCCGTGGA 60.289 45.455 0.00 0.00 0.00 4.02
3319 3820 2.936498 CTGTATTTTCTTCGCCGTGGAT 59.064 45.455 0.00 0.00 0.00 3.41
3320 3821 4.116961 CTGTATTTTCTTCGCCGTGGATA 58.883 43.478 0.00 0.00 0.00 2.59
3321 3822 3.866910 TGTATTTTCTTCGCCGTGGATAC 59.133 43.478 0.00 0.00 0.00 2.24
3322 3823 1.729284 TTTTCTTCGCCGTGGATACC 58.271 50.000 0.00 0.00 0.00 2.73
3323 3824 0.609151 TTTCTTCGCCGTGGATACCA 59.391 50.000 0.00 0.00 0.00 3.25
3351 3852 4.223477 CACCCATTTCCCATGAAACTGAAT 59.777 41.667 0.00 0.00 42.97 2.57
3354 3855 3.574284 TTTCCCATGAAACTGAATGCG 57.426 42.857 0.00 0.00 35.58 4.73
3355 3856 2.488204 TCCCATGAAACTGAATGCGA 57.512 45.000 0.00 0.00 0.00 5.10
3365 3866 4.668576 AACTGAATGCGAGTGTACAATG 57.331 40.909 0.00 0.00 0.00 2.82
3370 3871 0.035534 TGCGAGTGTACAATGGGCAT 60.036 50.000 12.88 0.00 0.00 4.40
3371 3872 0.657840 GCGAGTGTACAATGGGCATC 59.342 55.000 0.00 0.00 0.00 3.91
3385 3886 2.158475 TGGGCATCCAGGTTTGATATCC 60.158 50.000 0.00 0.00 38.32 2.59
3398 3899 8.480501 CAGGTTTGATATCCCAAAATTTCAGAT 58.519 33.333 0.00 0.00 37.72 2.90
3549 4051 7.310072 TCGTGTACTTCTTTCAAATTTGTGA 57.690 32.000 17.47 11.46 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.359478 CCAACCCCTACGTGCCAC 60.359 66.667 0.00 0.00 0.00 5.01
1 2 4.338710 GCCAACCCCTACGTGCCA 62.339 66.667 0.00 0.00 0.00 4.92
2 3 4.029809 AGCCAACCCCTACGTGCC 62.030 66.667 0.00 0.00 0.00 5.01
3 4 2.746277 CAGCCAACCCCTACGTGC 60.746 66.667 0.00 0.00 0.00 5.34
4 5 2.746277 GCAGCCAACCCCTACGTG 60.746 66.667 0.00 0.00 0.00 4.49
5 6 4.388499 CGCAGCCAACCCCTACGT 62.388 66.667 0.00 0.00 0.00 3.57
56 92 0.740164 TCGTTTTTAGCGCCGGCATA 60.740 50.000 28.98 16.07 43.41 3.14
84 120 2.114670 CCAAATCATCAGCCGCCGT 61.115 57.895 0.00 0.00 0.00 5.68
292 339 0.548989 AGGCCGCTCTCTCTTCTCTA 59.451 55.000 0.00 0.00 0.00 2.43
306 353 0.437295 CGAAAACAGACGTTAGGCCG 59.563 55.000 0.00 0.00 33.99 6.13
311 360 3.017265 GGTCTCCGAAAACAGACGTTA 57.983 47.619 0.00 0.00 40.11 3.18
312 361 1.861971 GGTCTCCGAAAACAGACGTT 58.138 50.000 0.00 0.00 40.11 3.99
354 403 5.636121 CGTTAAACTATAGCGGCATTATGGA 59.364 40.000 1.45 0.00 0.00 3.41
356 405 5.407387 ACCGTTAAACTATAGCGGCATTATG 59.593 40.000 13.63 0.00 45.53 1.90
407 458 0.319813 GCCGCTTGCCAAGTTTCATT 60.320 50.000 6.28 0.00 0.00 2.57
421 472 3.007635 GTTTTATTGTCAGTAGGCCGCT 58.992 45.455 0.00 0.00 0.00 5.52
450 502 3.949113 GGAATGGGATTAAAGTTGGCGTA 59.051 43.478 0.00 0.00 0.00 4.42
462 514 5.393027 CGAAAAATGTTCTCGGAATGGGATT 60.393 40.000 0.00 0.00 0.00 3.01
484 536 8.723311 CCGAAATATTATTTTATAAGTGGCCGA 58.277 33.333 0.00 0.00 0.00 5.54
570 624 0.822164 CTTACATCCGTCCGGGTCTT 59.178 55.000 0.00 0.00 37.00 3.01
586 640 6.768029 GCATCTGCATGTTTTCAAAACTTA 57.232 33.333 14.10 0.00 41.59 2.24
679 735 1.299541 CTGTTGCGTCAGGTGTCTTT 58.700 50.000 0.76 0.00 0.00 2.52
690 746 2.661866 GCCTCGTGACTGTTGCGT 60.662 61.111 5.22 0.00 0.00 5.24
701 757 2.431942 CCGCTTGTAACGCCTCGT 60.432 61.111 0.00 0.00 43.97 4.18
718 774 1.218854 GGTGGCACATTGGATTGGC 59.781 57.895 20.82 0.00 44.52 4.52
719 775 0.975135 TTGGTGGCACATTGGATTGG 59.025 50.000 20.82 0.00 44.52 3.16
720 776 1.619827 AGTTGGTGGCACATTGGATTG 59.380 47.619 20.82 0.00 44.52 2.67
721 777 2.014010 AGTTGGTGGCACATTGGATT 57.986 45.000 20.82 0.00 44.52 3.01
722 778 2.726821 CTAGTTGGTGGCACATTGGAT 58.273 47.619 20.82 2.35 44.52 3.41
723 779 1.886222 GCTAGTTGGTGGCACATTGGA 60.886 52.381 20.82 0.15 44.52 3.53
724 780 0.527565 GCTAGTTGGTGGCACATTGG 59.472 55.000 20.82 4.59 44.52 3.16
725 781 1.200716 CTGCTAGTTGGTGGCACATTG 59.799 52.381 20.82 4.42 44.52 2.82
726 782 1.538047 CTGCTAGTTGGTGGCACATT 58.462 50.000 20.82 3.88 44.52 2.71
727 783 0.322816 CCTGCTAGTTGGTGGCACAT 60.323 55.000 20.82 4.57 44.52 3.21
728 784 1.073025 CCTGCTAGTTGGTGGCACA 59.927 57.895 20.82 2.61 37.82 4.57
729 785 2.335712 GCCTGCTAGTTGGTGGCAC 61.336 63.158 9.70 9.70 37.82 5.01
730 786 2.034066 GCCTGCTAGTTGGTGGCA 59.966 61.111 0.00 0.00 41.05 4.92
731 787 2.751837 GGCCTGCTAGTTGGTGGC 60.752 66.667 0.00 0.00 42.56 5.01
732 788 2.044946 GGGCCTGCTAGTTGGTGG 60.045 66.667 0.84 0.00 0.00 4.61
733 789 2.436646 CGGGCCTGCTAGTTGGTG 60.437 66.667 0.84 0.00 0.00 4.17
734 790 3.717294 CCGGGCCTGCTAGTTGGT 61.717 66.667 5.85 0.00 0.00 3.67
735 791 3.717294 ACCGGGCCTGCTAGTTGG 61.717 66.667 5.85 0.00 0.00 3.77
736 792 2.436646 CACCGGGCCTGCTAGTTG 60.437 66.667 5.85 0.00 0.00 3.16
737 793 2.606519 TCACCGGGCCTGCTAGTT 60.607 61.111 5.85 0.00 0.00 2.24
738 794 3.077556 CTCACCGGGCCTGCTAGT 61.078 66.667 5.85 0.00 0.00 2.57
739 795 1.899437 TTTCTCACCGGGCCTGCTAG 61.899 60.000 5.85 2.71 0.00 3.42
740 796 1.485294 TTTTCTCACCGGGCCTGCTA 61.485 55.000 5.85 0.00 0.00 3.49
741 797 2.754664 CTTTTCTCACCGGGCCTGCT 62.755 60.000 5.85 0.00 0.00 4.24
742 798 2.282180 TTTTCTCACCGGGCCTGC 60.282 61.111 5.85 0.00 0.00 4.85
743 799 0.674895 CTCTTTTCTCACCGGGCCTG 60.675 60.000 6.32 3.88 0.00 4.85
744 800 0.836400 TCTCTTTTCTCACCGGGCCT 60.836 55.000 6.32 0.00 0.00 5.19
745 801 0.673956 GTCTCTTTTCTCACCGGGCC 60.674 60.000 6.32 0.00 0.00 5.80
746 802 1.014564 CGTCTCTTTTCTCACCGGGC 61.015 60.000 6.32 0.00 0.00 6.13
747 803 0.601558 TCGTCTCTTTTCTCACCGGG 59.398 55.000 6.32 0.00 0.00 5.73
748 804 1.983972 CTCGTCTCTTTTCTCACCGG 58.016 55.000 0.00 0.00 0.00 5.28
749 805 1.341606 GCTCGTCTCTTTTCTCACCG 58.658 55.000 0.00 0.00 0.00 4.94
750 806 1.341606 CGCTCGTCTCTTTTCTCACC 58.658 55.000 0.00 0.00 0.00 4.02
751 807 0.711118 GCGCTCGTCTCTTTTCTCAC 59.289 55.000 0.00 0.00 0.00 3.51
752 808 0.313987 TGCGCTCGTCTCTTTTCTCA 59.686 50.000 9.73 0.00 0.00 3.27
753 809 1.634702 ATGCGCTCGTCTCTTTTCTC 58.365 50.000 9.73 0.00 0.00 2.87
754 810 2.094700 TGTATGCGCTCGTCTCTTTTCT 60.095 45.455 9.73 0.00 0.00 2.52
755 811 2.028165 GTGTATGCGCTCGTCTCTTTTC 59.972 50.000 9.73 0.00 0.00 2.29
756 812 1.993370 GTGTATGCGCTCGTCTCTTTT 59.007 47.619 9.73 0.00 0.00 2.27
757 813 1.067846 TGTGTATGCGCTCGTCTCTTT 60.068 47.619 9.73 0.00 0.00 2.52
758 814 0.526211 TGTGTATGCGCTCGTCTCTT 59.474 50.000 9.73 0.00 0.00 2.85
759 815 0.741326 ATGTGTATGCGCTCGTCTCT 59.259 50.000 9.73 0.00 0.00 3.10
760 816 1.124462 GATGTGTATGCGCTCGTCTC 58.876 55.000 9.73 0.00 0.00 3.36
761 817 0.249073 GGATGTGTATGCGCTCGTCT 60.249 55.000 9.73 0.00 0.00 4.18
762 818 1.540607 CGGATGTGTATGCGCTCGTC 61.541 60.000 9.73 5.03 41.15 4.20
763 819 1.588932 CGGATGTGTATGCGCTCGT 60.589 57.895 9.73 0.00 41.15 4.18
764 820 3.224806 CGGATGTGTATGCGCTCG 58.775 61.111 9.73 0.00 41.15 5.03
775 831 1.374252 GCGGACACAAGACGGATGT 60.374 57.895 0.00 0.00 0.00 3.06
776 832 2.444624 CGCGGACACAAGACGGATG 61.445 63.158 0.00 0.00 0.00 3.51
777 833 2.126071 CGCGGACACAAGACGGAT 60.126 61.111 0.00 0.00 0.00 4.18
795 851 3.564027 GAGCCGGATTTGCGTCGG 61.564 66.667 5.05 0.00 45.84 4.79
796 852 1.906994 TTTGAGCCGGATTTGCGTCG 61.907 55.000 5.05 0.00 0.00 5.12
797 853 0.239879 TTTTGAGCCGGATTTGCGTC 59.760 50.000 5.05 0.00 0.00 5.19
798 854 0.671251 TTTTTGAGCCGGATTTGCGT 59.329 45.000 5.05 0.00 0.00 5.24
799 855 1.655099 CATTTTTGAGCCGGATTTGCG 59.345 47.619 5.05 0.00 0.00 4.85
800 856 2.001872 CCATTTTTGAGCCGGATTTGC 58.998 47.619 5.05 0.00 0.00 3.68
801 857 2.620242 CCCATTTTTGAGCCGGATTTG 58.380 47.619 5.05 0.00 0.00 2.32
802 858 1.066215 GCCCATTTTTGAGCCGGATTT 60.066 47.619 5.05 0.00 0.00 2.17
803 859 0.536724 GCCCATTTTTGAGCCGGATT 59.463 50.000 5.05 0.00 0.00 3.01
804 860 1.329913 GGCCCATTTTTGAGCCGGAT 61.330 55.000 5.05 0.00 35.30 4.18
805 861 1.981853 GGCCCATTTTTGAGCCGGA 60.982 57.895 5.05 0.00 35.30 5.14
806 862 2.578664 GGCCCATTTTTGAGCCGG 59.421 61.111 0.00 0.00 35.30 6.13
808 864 2.578664 CCGGCCCATTTTTGAGCC 59.421 61.111 0.00 0.00 42.18 4.70
809 865 1.540435 TTCCCGGCCCATTTTTGAGC 61.540 55.000 0.00 0.00 0.00 4.26
810 866 1.134729 CATTCCCGGCCCATTTTTGAG 60.135 52.381 0.00 0.00 0.00 3.02
811 867 0.901124 CATTCCCGGCCCATTTTTGA 59.099 50.000 0.00 0.00 0.00 2.69
812 868 0.107752 CCATTCCCGGCCCATTTTTG 60.108 55.000 0.00 0.00 0.00 2.44
813 869 0.252467 TCCATTCCCGGCCCATTTTT 60.252 50.000 0.00 0.00 0.00 1.94
814 870 0.031212 ATCCATTCCCGGCCCATTTT 60.031 50.000 0.00 0.00 0.00 1.82
815 871 0.031212 AATCCATTCCCGGCCCATTT 60.031 50.000 0.00 0.00 0.00 2.32
816 872 0.760189 CAATCCATTCCCGGCCCATT 60.760 55.000 0.00 0.00 0.00 3.16
817 873 1.152483 CAATCCATTCCCGGCCCAT 60.152 57.895 0.00 0.00 0.00 4.00
818 874 2.278404 CAATCCATTCCCGGCCCA 59.722 61.111 0.00 0.00 0.00 5.36
819 875 1.828224 GTCAATCCATTCCCGGCCC 60.828 63.158 0.00 0.00 0.00 5.80
820 876 1.077068 TGTCAATCCATTCCCGGCC 60.077 57.895 0.00 0.00 0.00 6.13
821 877 1.103398 CCTGTCAATCCATTCCCGGC 61.103 60.000 0.00 0.00 0.00 6.13
822 878 1.103398 GCCTGTCAATCCATTCCCGG 61.103 60.000 0.00 0.00 0.00 5.73
823 879 1.439353 CGCCTGTCAATCCATTCCCG 61.439 60.000 0.00 0.00 0.00 5.14
824 880 1.103398 CCGCCTGTCAATCCATTCCC 61.103 60.000 0.00 0.00 0.00 3.97
825 881 0.107214 TCCGCCTGTCAATCCATTCC 60.107 55.000 0.00 0.00 0.00 3.01
826 882 1.017387 GTCCGCCTGTCAATCCATTC 58.983 55.000 0.00 0.00 0.00 2.67
827 883 0.744414 CGTCCGCCTGTCAATCCATT 60.744 55.000 0.00 0.00 0.00 3.16
828 884 1.153369 CGTCCGCCTGTCAATCCAT 60.153 57.895 0.00 0.00 0.00 3.41
829 885 1.822114 TTCGTCCGCCTGTCAATCCA 61.822 55.000 0.00 0.00 0.00 3.41
830 886 0.672401 TTTCGTCCGCCTGTCAATCC 60.672 55.000 0.00 0.00 0.00 3.01
831 887 0.721718 CTTTCGTCCGCCTGTCAATC 59.278 55.000 0.00 0.00 0.00 2.67
832 888 1.298859 GCTTTCGTCCGCCTGTCAAT 61.299 55.000 0.00 0.00 0.00 2.57
833 889 1.959226 GCTTTCGTCCGCCTGTCAA 60.959 57.895 0.00 0.00 0.00 3.18
834 890 2.357034 GCTTTCGTCCGCCTGTCA 60.357 61.111 0.00 0.00 0.00 3.58
835 891 1.503818 TTTGCTTTCGTCCGCCTGTC 61.504 55.000 0.00 0.00 0.00 3.51
836 892 1.525077 TTTGCTTTCGTCCGCCTGT 60.525 52.632 0.00 0.00 0.00 4.00
837 893 1.082104 GTTTGCTTTCGTCCGCCTG 60.082 57.895 0.00 0.00 0.00 4.85
838 894 2.604174 CGTTTGCTTTCGTCCGCCT 61.604 57.895 0.00 0.00 0.00 5.52
839 895 2.127383 CGTTTGCTTTCGTCCGCC 60.127 61.111 0.00 0.00 0.00 6.13
840 896 2.795389 GCGTTTGCTTTCGTCCGC 60.795 61.111 0.00 0.00 38.39 5.54
841 897 2.127383 GGCGTTTGCTTTCGTCCG 60.127 61.111 0.00 0.00 42.25 4.79
842 898 2.254350 GGGCGTTTGCTTTCGTCC 59.746 61.111 3.40 3.40 44.21 4.79
843 899 2.127383 CGGGCGTTTGCTTTCGTC 60.127 61.111 0.00 0.00 42.25 4.20
844 900 2.888998 GACGGGCGTTTGCTTTCGT 61.889 57.895 0.00 0.00 41.71 3.85
845 901 2.127383 GACGGGCGTTTGCTTTCG 60.127 61.111 0.00 0.00 42.25 3.46
846 902 1.862602 ATGGACGGGCGTTTGCTTTC 61.863 55.000 0.00 0.00 42.25 2.62
847 903 1.460273 AATGGACGGGCGTTTGCTTT 61.460 50.000 0.00 0.00 42.25 3.51
848 904 1.460273 AAATGGACGGGCGTTTGCTT 61.460 50.000 0.00 0.00 42.25 3.91
849 905 0.606944 TAAATGGACGGGCGTTTGCT 60.607 50.000 0.00 0.00 42.25 3.91
850 906 0.179174 CTAAATGGACGGGCGTTTGC 60.179 55.000 0.00 0.00 41.71 3.68
851 907 1.444836 TCTAAATGGACGGGCGTTTG 58.555 50.000 0.00 0.00 0.00 2.93
852 908 2.285977 GATCTAAATGGACGGGCGTTT 58.714 47.619 0.00 0.00 0.00 3.60
853 909 1.805120 CGATCTAAATGGACGGGCGTT 60.805 52.381 0.00 0.00 0.00 4.84
854 910 0.249322 CGATCTAAATGGACGGGCGT 60.249 55.000 0.00 0.00 0.00 5.68
855 911 0.944311 CCGATCTAAATGGACGGGCG 60.944 60.000 0.00 0.00 39.92 6.13
856 912 1.228657 GCCGATCTAAATGGACGGGC 61.229 60.000 0.00 3.21 43.15 6.13
857 913 0.944311 CGCCGATCTAAATGGACGGG 60.944 60.000 0.00 0.00 43.15 5.28
858 914 1.557443 GCGCCGATCTAAATGGACGG 61.557 60.000 0.00 0.00 45.26 4.79
859 915 1.853319 GCGCCGATCTAAATGGACG 59.147 57.895 0.00 0.00 0.00 4.79
860 916 0.874607 ACGCGCCGATCTAAATGGAC 60.875 55.000 5.73 0.00 0.00 4.02
861 917 0.179094 AACGCGCCGATCTAAATGGA 60.179 50.000 5.73 0.00 0.00 3.41
862 918 0.655733 AAACGCGCCGATCTAAATGG 59.344 50.000 5.73 0.00 0.00 3.16
863 919 1.594518 CCAAACGCGCCGATCTAAATG 60.595 52.381 5.73 0.00 0.00 2.32
864 920 0.655733 CCAAACGCGCCGATCTAAAT 59.344 50.000 5.73 0.00 0.00 1.40
865 921 0.671163 ACCAAACGCGCCGATCTAAA 60.671 50.000 5.73 0.00 0.00 1.85
866 922 1.079681 ACCAAACGCGCCGATCTAA 60.080 52.632 5.73 0.00 0.00 2.10
867 923 1.517694 GACCAAACGCGCCGATCTA 60.518 57.895 5.73 0.00 0.00 1.98
868 924 2.813908 GACCAAACGCGCCGATCT 60.814 61.111 5.73 0.00 0.00 2.75
869 925 2.673114 TTGACCAAACGCGCCGATC 61.673 57.895 5.73 0.00 0.00 3.69
870 926 2.666862 TTGACCAAACGCGCCGAT 60.667 55.556 5.73 0.00 0.00 4.18
871 927 3.641986 GTTGACCAAACGCGCCGA 61.642 61.111 5.73 0.00 0.00 5.54
872 928 2.655952 AAAGTTGACCAAACGCGCCG 62.656 55.000 5.73 0.00 44.04 6.46
873 929 0.526739 AAAAGTTGACCAAACGCGCC 60.527 50.000 5.73 0.00 44.04 6.53
874 930 1.273688 AAAAAGTTGACCAAACGCGC 58.726 45.000 5.73 0.00 44.04 6.86
890 946 5.915758 CCGTTTGGATCAACGTGAATAAAAA 59.084 36.000 14.85 0.00 37.49 1.94
891 947 5.238868 TCCGTTTGGATCAACGTGAATAAAA 59.761 36.000 14.85 0.00 40.17 1.52
892 948 4.755629 TCCGTTTGGATCAACGTGAATAAA 59.244 37.500 14.85 0.00 40.17 1.40
893 949 4.316645 TCCGTTTGGATCAACGTGAATAA 58.683 39.130 14.85 0.00 40.17 1.40
894 950 3.927854 TCCGTTTGGATCAACGTGAATA 58.072 40.909 14.85 0.00 40.17 1.75
895 951 2.773487 TCCGTTTGGATCAACGTGAAT 58.227 42.857 14.85 0.00 40.17 2.57
896 952 2.242047 TCCGTTTGGATCAACGTGAA 57.758 45.000 14.85 1.11 40.17 3.18
897 953 3.991242 TCCGTTTGGATCAACGTGA 57.009 47.368 14.85 10.02 40.17 4.35
906 962 1.052617 TCCATGACTGTCCGTTTGGA 58.947 50.000 5.17 9.54 43.88 3.53
907 963 1.156736 GTCCATGACTGTCCGTTTGG 58.843 55.000 5.17 7.46 33.05 3.28
908 964 0.790207 CGTCCATGACTGTCCGTTTG 59.210 55.000 5.17 0.00 0.00 2.93
909 965 0.677288 TCGTCCATGACTGTCCGTTT 59.323 50.000 5.17 0.00 0.00 3.60
910 966 0.677288 TTCGTCCATGACTGTCCGTT 59.323 50.000 5.17 0.00 0.00 4.44
911 967 0.677288 TTTCGTCCATGACTGTCCGT 59.323 50.000 5.17 0.00 0.00 4.69
912 968 1.660607 CATTTCGTCCATGACTGTCCG 59.339 52.381 5.17 1.23 0.00 4.79
913 969 2.009774 CCATTTCGTCCATGACTGTCC 58.990 52.381 5.17 0.00 0.00 4.02
914 970 2.009774 CCCATTTCGTCCATGACTGTC 58.990 52.381 0.00 0.00 0.00 3.51
915 971 1.351017 ACCCATTTCGTCCATGACTGT 59.649 47.619 0.00 0.00 0.00 3.55
916 972 2.113860 ACCCATTTCGTCCATGACTG 57.886 50.000 0.00 0.00 0.00 3.51
917 973 2.420129 GCTACCCATTTCGTCCATGACT 60.420 50.000 0.00 0.00 0.00 3.41
918 974 1.940613 GCTACCCATTTCGTCCATGAC 59.059 52.381 0.00 0.00 0.00 3.06
919 975 1.134220 GGCTACCCATTTCGTCCATGA 60.134 52.381 0.00 0.00 0.00 3.07
920 976 1.308998 GGCTACCCATTTCGTCCATG 58.691 55.000 0.00 0.00 0.00 3.66
921 977 0.182775 GGGCTACCCATTTCGTCCAT 59.817 55.000 0.00 0.00 44.65 3.41
922 978 1.605453 GGGCTACCCATTTCGTCCA 59.395 57.895 0.00 0.00 44.65 4.02
923 979 4.553668 GGGCTACCCATTTCGTCC 57.446 61.111 0.00 0.00 44.65 4.79
932 988 0.919710 AGAACTCCAATGGGCTACCC 59.080 55.000 0.00 0.00 45.71 3.69
933 989 1.840635 AGAGAACTCCAATGGGCTACC 59.159 52.381 0.00 0.00 37.24 3.18
934 990 4.755266 TTAGAGAACTCCAATGGGCTAC 57.245 45.455 0.00 0.00 0.00 3.58
935 991 5.975988 AATTAGAGAACTCCAATGGGCTA 57.024 39.130 0.00 0.00 0.00 3.93
936 992 4.870021 AATTAGAGAACTCCAATGGGCT 57.130 40.909 0.00 0.00 0.00 5.19
937 993 5.163509 GGAAAATTAGAGAACTCCAATGGGC 60.164 44.000 0.00 0.00 0.00 5.36
938 994 6.190587 AGGAAAATTAGAGAACTCCAATGGG 58.809 40.000 0.00 0.00 0.00 4.00
939 995 8.807948 TTAGGAAAATTAGAGAACTCCAATGG 57.192 34.615 0.00 0.00 0.00 3.16
952 1008 9.285770 GCTCCGTTGTTATTTTAGGAAAATTAG 57.714 33.333 2.73 0.00 41.16 1.73
988 1044 5.339990 GTGTCTATCTTTGACTCTCTCTGC 58.660 45.833 0.00 0.00 35.63 4.26
1007 1063 1.668101 ATCCTCCCGCTTCTCGTGTC 61.668 60.000 0.00 0.00 36.19 3.67
1015 1071 2.812619 GCAGGCTATCCTCCCGCTT 61.813 63.158 0.00 0.00 41.93 4.68
1019 1075 1.228094 GCAAGCAGGCTATCCTCCC 60.228 63.158 0.00 0.00 41.93 4.30
1188 1244 2.435059 GGTTCTCTCCGCACTGCC 60.435 66.667 0.00 0.00 0.00 4.85
1255 1311 2.038033 GGGATTACTGCGTGGGCTTATA 59.962 50.000 0.00 0.00 40.82 0.98
1362 1420 1.909700 TGCCCCAGAACTGCTAAAAG 58.090 50.000 0.00 0.00 0.00 2.27
1366 1424 3.951563 AATTATGCCCCAGAACTGCTA 57.048 42.857 0.00 0.00 0.00 3.49
1478 1536 8.932610 AGGCCAGTTATATAAGATCATATGAGG 58.067 37.037 11.78 3.26 0.00 3.86
1602 1660 2.563179 TCTAGGTTCACAAGTGGAGCTC 59.437 50.000 15.88 4.71 42.89 4.09
1709 1767 4.943705 GGCTCATTCAGAATTACAGTTCCA 59.056 41.667 0.00 0.00 0.00 3.53
1941 2000 2.737252 GGGTTTCTTCGTCAGCTAACTG 59.263 50.000 0.00 0.00 45.95 3.16
2150 2209 0.594028 CGGGATGGACGACATACACG 60.594 60.000 8.83 6.52 42.62 4.49
2159 2218 4.838152 CCTGCACCGGGATGGACG 62.838 72.222 6.32 0.00 42.00 4.79
2285 2344 3.666274 TGTAACATAACCAAGGTCACCG 58.334 45.455 0.00 0.00 0.00 4.94
2345 2404 0.860533 CGTTGGTGGCAATTTGCTTG 59.139 50.000 20.06 0.63 44.28 4.01
2485 2550 5.951747 GTCATATATAACCCCACATGGCATT 59.048 40.000 0.00 0.00 0.00 3.56
2582 2661 5.278660 GGATCAATGTCAATCAGGGTTATGC 60.279 44.000 0.00 0.00 0.00 3.14
2597 2676 6.153170 TGCATATTCACAACAAGGATCAATGT 59.847 34.615 0.00 0.00 0.00 2.71
2679 2764 5.924825 GCAAAATTAATGCCAAATTGCCAAA 59.075 32.000 5.11 0.00 37.85 3.28
2723 2808 6.938507 ACGAAAACAATAGTACCACCTGATA 58.061 36.000 0.00 0.00 0.00 2.15
2809 3307 1.630369 ACCTCCACATAGAAAGCAGCA 59.370 47.619 0.00 0.00 0.00 4.41
2810 3308 2.409948 ACCTCCACATAGAAAGCAGC 57.590 50.000 0.00 0.00 0.00 5.25
2811 3309 4.080863 ACCTAACCTCCACATAGAAAGCAG 60.081 45.833 0.00 0.00 0.00 4.24
2813 3311 4.489306 ACCTAACCTCCACATAGAAAGC 57.511 45.455 0.00 0.00 0.00 3.51
2814 3312 6.301169 AGAACCTAACCTCCACATAGAAAG 57.699 41.667 0.00 0.00 0.00 2.62
2815 3313 6.500751 AGAAGAACCTAACCTCCACATAGAAA 59.499 38.462 0.00 0.00 0.00 2.52
2816 3314 6.023603 AGAAGAACCTAACCTCCACATAGAA 58.976 40.000 0.00 0.00 0.00 2.10
2818 3316 5.187967 ACAGAAGAACCTAACCTCCACATAG 59.812 44.000 0.00 0.00 0.00 2.23
2820 3318 3.910627 ACAGAAGAACCTAACCTCCACAT 59.089 43.478 0.00 0.00 0.00 3.21
2850 3350 1.519408 GCTTACCCGACAAGCAGAAA 58.481 50.000 9.74 0.00 46.17 2.52
2862 3362 1.153549 CAGAGAGTGGCGCTTACCC 60.154 63.158 7.64 0.00 0.00 3.69
2906 3406 5.458452 ACAATCGCAAAACACACATAAGTTG 59.542 36.000 0.00 0.00 0.00 3.16
2909 3409 7.616103 TTAACAATCGCAAAACACACATAAG 57.384 32.000 0.00 0.00 0.00 1.73
2923 3423 7.992801 ACGAATTTTCTTCTTTTAACAATCGC 58.007 30.769 0.00 0.00 0.00 4.58
2969 3469 1.478510 CCCAGTACACTACCTGAGCTG 59.521 57.143 0.00 0.00 0.00 4.24
2970 3470 1.853963 CCCAGTACACTACCTGAGCT 58.146 55.000 0.00 0.00 0.00 4.09
2971 3471 0.175989 GCCCAGTACACTACCTGAGC 59.824 60.000 0.00 0.00 0.00 4.26
2972 3472 1.204941 GTGCCCAGTACACTACCTGAG 59.795 57.143 0.00 0.00 35.12 3.35
2973 3473 1.203137 AGTGCCCAGTACACTACCTGA 60.203 52.381 0.00 0.00 46.32 3.86
2974 3474 1.267121 AGTGCCCAGTACACTACCTG 58.733 55.000 0.00 0.00 46.32 4.00
2975 3475 2.913603 TAGTGCCCAGTACACTACCT 57.086 50.000 0.00 0.00 46.32 3.08
2978 3478 3.453353 GGGAATTAGTGCCCAGTACACTA 59.547 47.826 0.00 0.00 46.32 2.74
2980 3480 2.640184 GGGAATTAGTGCCCAGTACAC 58.360 52.381 0.00 0.00 44.07 2.90
2994 3494 2.938838 TGTTCTGTTTCGTGGGGAATT 58.061 42.857 0.00 0.00 33.85 2.17
3025 3525 1.228862 GTCAAACCTGGGTGCCCAT 60.229 57.895 10.80 0.00 46.15 4.00
3056 3556 9.934190 CACACCAGGAAATTTTTAAAAATTCTG 57.066 29.630 29.70 28.77 45.16 3.02
3066 3566 3.308401 AGAGCCACACCAGGAAATTTTT 58.692 40.909 0.00 0.00 0.00 1.94
3174 3675 1.450211 GTGTGTACACTGGGCACCT 59.550 57.895 25.60 0.00 44.48 4.00
3217 3718 2.380081 CCGAGATTAACACGGGCAC 58.620 57.895 0.00 0.00 46.11 5.01
3281 3782 9.900710 GAAAATACAGTCTGACATACGATCTAT 57.099 33.333 10.88 0.00 0.00 1.98
3282 3783 9.121658 AGAAAATACAGTCTGACATACGATCTA 57.878 33.333 10.88 0.00 0.00 1.98
3284 3785 8.635877 AAGAAAATACAGTCTGACATACGATC 57.364 34.615 10.88 0.61 0.00 3.69
3285 3786 7.432545 CGAAGAAAATACAGTCTGACATACGAT 59.567 37.037 10.88 0.00 0.00 3.73
3286 3787 6.745907 CGAAGAAAATACAGTCTGACATACGA 59.254 38.462 10.88 0.00 0.00 3.43
3287 3788 6.506513 GCGAAGAAAATACAGTCTGACATACG 60.507 42.308 10.88 2.11 0.00 3.06
3288 3789 6.237861 GGCGAAGAAAATACAGTCTGACATAC 60.238 42.308 10.88 0.00 0.00 2.39
3289 3790 5.810587 GGCGAAGAAAATACAGTCTGACATA 59.189 40.000 10.88 2.51 0.00 2.29
3290 3791 4.631813 GGCGAAGAAAATACAGTCTGACAT 59.368 41.667 10.88 0.09 0.00 3.06
3291 3792 3.994392 GGCGAAGAAAATACAGTCTGACA 59.006 43.478 10.88 0.00 0.00 3.58
3292 3793 3.060895 CGGCGAAGAAAATACAGTCTGAC 59.939 47.826 6.91 0.00 0.00 3.51
3293 3794 3.250744 CGGCGAAGAAAATACAGTCTGA 58.749 45.455 6.91 0.00 0.00 3.27
3294 3795 2.993899 ACGGCGAAGAAAATACAGTCTG 59.006 45.455 16.62 0.00 0.00 3.51
3295 3796 2.993899 CACGGCGAAGAAAATACAGTCT 59.006 45.455 16.62 0.00 0.00 3.24
3296 3797 2.093783 CCACGGCGAAGAAAATACAGTC 59.906 50.000 16.62 0.00 0.00 3.51
3297 3798 2.073816 CCACGGCGAAGAAAATACAGT 58.926 47.619 16.62 0.00 0.00 3.55
3298 3799 2.343101 TCCACGGCGAAGAAAATACAG 58.657 47.619 16.62 0.00 0.00 2.74
3299 3800 2.459060 TCCACGGCGAAGAAAATACA 57.541 45.000 16.62 0.00 0.00 2.29
3300 3801 3.246936 GGTATCCACGGCGAAGAAAATAC 59.753 47.826 16.62 11.62 0.00 1.89
3301 3802 3.118702 TGGTATCCACGGCGAAGAAAATA 60.119 43.478 16.62 0.00 0.00 1.40
3302 3803 2.285977 GGTATCCACGGCGAAGAAAAT 58.714 47.619 16.62 0.49 0.00 1.82
3303 3804 1.002201 TGGTATCCACGGCGAAGAAAA 59.998 47.619 16.62 0.00 0.00 2.29
3304 3805 0.609151 TGGTATCCACGGCGAAGAAA 59.391 50.000 16.62 0.00 0.00 2.52
3305 3806 0.108520 GTGGTATCCACGGCGAAGAA 60.109 55.000 16.62 0.00 44.95 2.52
3306 3807 1.514087 GTGGTATCCACGGCGAAGA 59.486 57.895 16.62 10.32 44.95 2.87
3307 3808 4.104143 GTGGTATCCACGGCGAAG 57.896 61.111 16.62 5.37 44.95 3.79
3315 3816 3.716381 GGGTGACCGTGGTATCCA 58.284 61.111 12.09 0.00 43.64 3.41
3324 3825 3.144350 TTTCATGGGAAATGGGTGACCG 61.144 50.000 0.00 0.00 45.70 4.79
3325 3826 2.233676 GTTTCATGGGAAATGGGTGACC 59.766 50.000 0.00 0.00 44.32 4.02
3326 3827 3.056607 CAGTTTCATGGGAAATGGGTGAC 60.057 47.826 0.00 0.00 44.32 3.67
3327 3828 3.164268 CAGTTTCATGGGAAATGGGTGA 58.836 45.455 0.00 0.00 44.32 4.02
3328 3829 3.164268 TCAGTTTCATGGGAAATGGGTG 58.836 45.455 9.26 0.00 44.32 4.61
3329 3830 3.541242 TCAGTTTCATGGGAAATGGGT 57.459 42.857 9.26 0.00 44.32 4.51
3330 3831 4.761975 CATTCAGTTTCATGGGAAATGGG 58.238 43.478 9.26 0.00 44.32 4.00
3351 3852 0.035534 ATGCCCATTGTACACTCGCA 60.036 50.000 0.00 1.54 0.00 5.10
3354 3855 2.292267 CTGGATGCCCATTGTACACTC 58.708 52.381 0.00 0.00 42.59 3.51
3355 3856 1.064463 CCTGGATGCCCATTGTACACT 60.064 52.381 0.00 0.00 42.59 3.55
3365 3866 2.519013 GGATATCAAACCTGGATGCCC 58.481 52.381 0.00 0.00 0.00 5.36
3370 3871 6.728164 TGAAATTTTGGGATATCAAACCTGGA 59.272 34.615 0.00 0.00 36.49 3.86
3371 3872 6.945218 TGAAATTTTGGGATATCAAACCTGG 58.055 36.000 4.83 0.00 36.49 4.45
3430 3932 7.496346 ACCACACACCCCTATATGAATATAG 57.504 40.000 9.50 9.50 41.08 1.31
3583 4085 1.065551 GCCGACAACTGCTGACTTTTT 59.934 47.619 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.