Multiple sequence alignment - TraesCS3A01G291500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G291500 chr3A 100.000 6413 0 0 1693 8105 521636333 521629921 0.000000e+00 11843.0
1 TraesCS3A01G291500 chr3A 100.000 1456 0 0 1 1456 521638025 521636570 0.000000e+00 2689.0
2 TraesCS3A01G291500 chr3A 89.508 305 31 1 4652 4955 714773281 714773585 1.280000e-102 385.0
3 TraesCS3A01G291500 chr3A 87.869 305 35 2 4652 4954 599415949 599416253 2.780000e-94 357.0
4 TraesCS3A01G291500 chr3A 94.545 165 8 1 5040 5204 182633903 182633740 3.750000e-63 254.0
5 TraesCS3A01G291500 chr3A 75.287 174 40 3 374 545 608694842 608694670 6.740000e-11 80.5
6 TraesCS3A01G291500 chr3D 96.796 5711 110 20 1693 7357 401178738 401173055 0.000000e+00 9465.0
7 TraesCS3A01G291500 chr3D 83.810 1155 128 25 209 1356 401180146 401179044 0.000000e+00 1042.0
8 TraesCS3A01G291500 chr3D 84.444 495 29 13 7408 7865 401173060 401172577 2.080000e-120 444.0
9 TraesCS3A01G291500 chr3D 86.585 164 6 2 7887 8047 401172208 401172058 5.030000e-37 167.0
10 TraesCS3A01G291500 chr3D 88.136 118 5 4 1348 1456 401178933 401178816 1.840000e-26 132.0
11 TraesCS3A01G291500 chr3D 81.731 104 11 8 2131 2229 75358704 75358604 6.740000e-11 80.5
12 TraesCS3A01G291500 chr3B 94.286 2030 67 14 2197 4190 526967314 526965298 0.000000e+00 3061.0
13 TraesCS3A01G291500 chr3B 93.697 1888 78 12 5495 7357 526964055 526962184 0.000000e+00 2789.0
14 TraesCS3A01G291500 chr3B 96.748 861 23 4 4184 5041 526965223 526964365 0.000000e+00 1430.0
15 TraesCS3A01G291500 chr3B 85.980 1184 111 30 300 1456 526969015 526967860 0.000000e+00 1216.0
16 TraesCS3A01G291500 chr3B 93.920 477 24 5 1693 2168 526967785 526967313 0.000000e+00 715.0
17 TraesCS3A01G291500 chr3B 88.451 381 20 7 7746 8105 526939548 526939171 9.660000e-119 438.0
18 TraesCS3A01G291500 chr3B 91.554 296 11 7 5201 5496 526964376 526964095 5.890000e-106 396.0
19 TraesCS3A01G291500 chr3B 95.266 169 6 2 5040 5207 614894320 614894153 4.820000e-67 267.0
20 TraesCS3A01G291500 chr3B 95.683 139 5 1 7606 7743 526960330 526960192 1.060000e-53 222.0
21 TraesCS3A01G291500 chr3B 84.656 189 10 3 7434 7605 526962139 526961953 3.890000e-38 171.0
22 TraesCS3A01G291500 chr3B 78.528 163 26 7 384 541 770445005 770444847 1.860000e-16 99.0
23 TraesCS3A01G291500 chr3B 86.517 89 10 2 2142 2228 113517569 113517657 6.700000e-16 97.1
24 TraesCS3A01G291500 chr3B 97.436 39 1 0 504 542 260358993 260359031 5.250000e-07 67.6
25 TraesCS3A01G291500 chr6A 88.889 306 32 2 4652 4955 398098885 398098580 7.680000e-100 375.0
26 TraesCS3A01G291500 chr6A 94.958 119 6 0 1 119 488752058 488751940 3.860000e-43 187.0
27 TraesCS3A01G291500 chr6A 91.729 133 7 4 1 132 506195624 506195495 1.800000e-41 182.0
28 TraesCS3A01G291500 chr5B 88.852 305 32 2 4652 4954 534012107 534012411 2.760000e-99 374.0
29 TraesCS3A01G291500 chr5A 88.411 302 34 1 4654 4954 626758882 626758581 5.980000e-96 363.0
30 TraesCS3A01G291500 chr5A 95.000 120 5 1 1 119 280158106 280158225 3.860000e-43 187.0
31 TraesCS3A01G291500 chr5A 94.958 119 6 0 1 119 425779946 425779828 3.860000e-43 187.0
32 TraesCS3A01G291500 chr4A 87.869 305 36 1 4652 4955 154377025 154377329 2.780000e-94 357.0
33 TraesCS3A01G291500 chr4A 95.238 168 6 2 5037 5204 137542307 137542472 1.730000e-66 265.0
34 TraesCS3A01G291500 chr4A 92.308 130 7 3 1 129 307015282 307015155 1.800000e-41 182.0
35 TraesCS3A01G291500 chr4D 87.829 304 35 2 4652 4954 111553976 111554278 1.000000e-93 355.0
36 TraesCS3A01G291500 chr4D 71.883 377 87 15 374 743 49502511 49502875 3.120000e-14 91.6
37 TraesCS3A01G291500 chr5D 95.294 170 7 1 5037 5206 62177115 62177283 1.340000e-67 268.0
38 TraesCS3A01G291500 chr5D 82.456 114 17 2 383 495 463965510 463965621 6.700000e-16 97.1
39 TraesCS3A01G291500 chr7B 95.266 169 6 2 5037 5205 411048334 411048500 4.820000e-67 267.0
40 TraesCS3A01G291500 chr7B 76.271 177 40 2 382 557 667096334 667096159 8.660000e-15 93.5
41 TraesCS3A01G291500 chr1A 95.266 169 7 1 5037 5205 515551313 515551480 4.820000e-67 267.0
42 TraesCS3A01G291500 chr1A 95.266 169 6 2 5037 5204 554284201 554284368 4.820000e-67 267.0
43 TraesCS3A01G291500 chr1A 95.783 166 5 2 5040 5204 554289489 554289325 4.820000e-67 267.0
44 TraesCS3A01G291500 chr1A 94.958 119 6 0 1 119 63805534 63805416 3.860000e-43 187.0
45 TraesCS3A01G291500 chr1A 81.366 161 22 6 389 545 591727615 591727771 3.070000e-24 124.0
46 TraesCS3A01G291500 chr7A 92.913 127 8 1 1 126 542142212 542142338 5.000000e-42 183.0
47 TraesCS3A01G291500 chr2A 90.141 142 10 4 1 140 36085425 36085286 1.800000e-41 182.0
48 TraesCS3A01G291500 chr2A 88.966 145 14 2 1 144 172147523 172147380 2.320000e-40 178.0
49 TraesCS3A01G291500 chr2A 87.209 86 10 1 2146 2230 102688124 102688039 6.700000e-16 97.1
50 TraesCS3A01G291500 chr6B 81.609 174 32 0 6472 6645 699144186 699144013 2.360000e-30 145.0
51 TraesCS3A01G291500 chr2D 73.314 341 78 12 410 743 297291417 297291751 6.650000e-21 113.0
52 TraesCS3A01G291500 chrUn 88.298 94 7 3 2145 2237 11032398 11032308 8.600000e-20 110.0
53 TraesCS3A01G291500 chr6D 85.393 89 10 3 2142 2229 305190127 305190213 1.120000e-13 89.8
54 TraesCS3A01G291500 chr1D 85.882 85 11 1 2145 2228 60287420 60287336 1.120000e-13 89.8
55 TraesCS3A01G291500 chr1B 85.227 88 10 3 2147 2231 20174284 20174197 4.030000e-13 87.9
56 TraesCS3A01G291500 chr2B 83.696 92 11 4 2145 2235 799282668 799282580 5.210000e-12 84.2
57 TraesCS3A01G291500 chr2B 85.714 63 6 2 6270 6330 451225158 451225097 6.790000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G291500 chr3A 521629921 521638025 8104 True 7266 11843 100.0000 1 8105 2 chr3A.!!$R3 8104
1 TraesCS3A01G291500 chr3D 401172058 401180146 8088 True 2250 9465 87.9542 209 8047 5 chr3D.!!$R2 7838
2 TraesCS3A01G291500 chr3B 526960192 526969015 8823 True 1250 3061 92.0655 300 7743 8 chr3B.!!$R4 7443

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.105142 TGCCTCTCCATACCTACCCC 60.105 60.000 0.00 0.0 0.00 4.95 F
245 246 0.331278 TACCCTTTCGACTCCCGGTA 59.669 55.000 0.00 0.0 39.14 4.02 F
542 544 0.666577 GGCGTGTGTAGGTGTGTCTC 60.667 60.000 0.00 0.0 0.00 3.36 F
814 825 0.723414 TCGTCGCTAAGTGGTCTACG 59.277 55.000 0.00 0.0 0.00 3.51 F
1078 1102 1.079474 TCACGCGCTTATTCCTGCA 60.079 52.632 5.73 0.0 0.00 4.41 F
1813 1965 1.139498 TGTGGGCATGGAGAGGGAAA 61.139 55.000 0.00 0.0 0.00 3.13 F
2385 2540 2.622942 GGTTGATGTTTGCAGTCAGGAA 59.377 45.455 0.00 0.0 0.00 3.36 F
3204 3362 3.220110 CCTTATTGGATGATGCTGCTGT 58.780 45.455 0.00 0.0 38.35 4.40 F
3851 4065 5.757320 CAGAATTATCTCCTGACATGTCCAC 59.243 44.000 22.85 0.0 32.03 4.02 F
4897 5198 9.258629 TCAAATGACCATCATAGGAAAAATTCT 57.741 29.630 0.00 0.0 35.76 2.40 F
6446 6800 0.802607 CGCGGCCAGAGTCTACTTTC 60.803 60.000 2.24 0.0 0.00 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1322 1346 1.339610 TCAAATGTTCAAACTGGGGCG 59.660 47.619 0.00 0.00 0.00 6.13 R
1800 1952 3.019564 GGAACACATTTCCCTCTCCATG 58.980 50.000 0.00 0.00 32.48 3.66 R
2347 2502 1.927487 ACCAATGGCATTTGAGCAGA 58.073 45.000 17.24 0.00 35.83 4.26 R
2385 2540 3.884037 ACAGAGGGAACACAAAGGAAT 57.116 42.857 0.00 0.00 0.00 3.01 R
3017 3175 3.244215 ACATAATGGACATGTAGAGGGCG 60.244 47.826 0.00 0.00 34.88 6.13 R
3148 3306 1.743394 GTAGCAGGCAACCCATGTAAC 59.257 52.381 0.00 0.00 37.17 2.50 R
3851 4065 1.484227 TTCACCACTTCGTTGACGCG 61.484 55.000 3.53 3.53 39.60 6.01 R
5072 5373 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28 R
5112 5413 2.565834 TCTTTAGTACGCAGCCTTTCCT 59.434 45.455 0.00 0.00 0.00 3.36 R
6569 6923 1.277273 CTCAGGTGGATGAAGCACTCA 59.723 52.381 0.00 0.00 38.81 3.41 R
8081 10458 0.179192 CCGTTCATTCATGCGTGGTG 60.179 55.000 5.98 6.01 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.943822 CTTTCTCCGAGAAGGGCC 57.056 61.111 11.54 0.00 41.52 5.80
18 19 2.291856 CTTTCTCCGAGAAGGGCCT 58.708 57.895 11.54 0.00 41.52 5.19
19 20 1.486211 CTTTCTCCGAGAAGGGCCTA 58.514 55.000 6.41 0.00 41.52 3.93
20 21 1.831736 CTTTCTCCGAGAAGGGCCTAA 59.168 52.381 6.41 0.00 41.52 2.69
21 22 1.946984 TTCTCCGAGAAGGGCCTAAA 58.053 50.000 6.41 0.00 41.52 1.85
22 23 1.192428 TCTCCGAGAAGGGCCTAAAC 58.808 55.000 6.41 1.27 41.52 2.01
23 24 1.196012 CTCCGAGAAGGGCCTAAACT 58.804 55.000 6.41 7.04 41.52 2.66
24 25 1.555533 CTCCGAGAAGGGCCTAAACTT 59.444 52.381 6.41 0.00 41.52 2.66
25 26 1.278127 TCCGAGAAGGGCCTAAACTTG 59.722 52.381 6.41 10.73 41.52 3.16
26 27 1.003233 CCGAGAAGGGCCTAAACTTGT 59.997 52.381 6.41 0.00 35.97 3.16
27 28 2.235402 CCGAGAAGGGCCTAAACTTGTA 59.765 50.000 6.41 0.00 35.97 2.41
28 29 3.307199 CCGAGAAGGGCCTAAACTTGTAA 60.307 47.826 6.41 0.00 35.97 2.41
29 30 4.320870 CGAGAAGGGCCTAAACTTGTAAA 58.679 43.478 6.41 0.00 0.00 2.01
30 31 4.153655 CGAGAAGGGCCTAAACTTGTAAAC 59.846 45.833 6.41 0.00 0.00 2.01
31 32 4.404640 AGAAGGGCCTAAACTTGTAAACC 58.595 43.478 6.41 0.00 0.00 3.27
32 33 4.105858 AGAAGGGCCTAAACTTGTAAACCT 59.894 41.667 6.41 0.00 0.00 3.50
33 34 4.464652 AGGGCCTAAACTTGTAAACCTT 57.535 40.909 2.82 0.00 0.00 3.50
34 35 4.149598 AGGGCCTAAACTTGTAAACCTTG 58.850 43.478 2.82 0.00 0.00 3.61
35 36 3.893200 GGGCCTAAACTTGTAAACCTTGT 59.107 43.478 0.84 0.00 0.00 3.16
36 37 4.261867 GGGCCTAAACTTGTAAACCTTGTG 60.262 45.833 0.84 0.00 0.00 3.33
37 38 4.340097 GGCCTAAACTTGTAAACCTTGTGT 59.660 41.667 0.00 0.00 0.00 3.72
38 39 5.278604 GCCTAAACTTGTAAACCTTGTGTG 58.721 41.667 0.00 0.00 0.00 3.82
39 40 5.278604 CCTAAACTTGTAAACCTTGTGTGC 58.721 41.667 0.00 0.00 0.00 4.57
40 41 5.067283 CCTAAACTTGTAAACCTTGTGTGCT 59.933 40.000 0.00 0.00 0.00 4.40
41 42 5.400066 AAACTTGTAAACCTTGTGTGCTT 57.600 34.783 0.00 0.00 0.00 3.91
42 43 6.518208 AAACTTGTAAACCTTGTGTGCTTA 57.482 33.333 0.00 0.00 0.00 3.09
43 44 5.494632 ACTTGTAAACCTTGTGTGCTTAC 57.505 39.130 0.00 0.00 0.00 2.34
44 45 4.944930 ACTTGTAAACCTTGTGTGCTTACA 59.055 37.500 0.00 0.00 32.20 2.41
45 46 5.416326 ACTTGTAAACCTTGTGTGCTTACAA 59.584 36.000 6.26 6.26 39.12 2.41
46 47 5.238006 TGTAAACCTTGTGTGCTTACAAC 57.762 39.130 2.81 0.00 35.75 3.32
47 48 4.944930 TGTAAACCTTGTGTGCTTACAACT 59.055 37.500 2.81 0.00 35.75 3.16
48 49 5.416326 TGTAAACCTTGTGTGCTTACAACTT 59.584 36.000 2.81 1.34 35.75 2.66
49 50 4.632538 AACCTTGTGTGCTTACAACTTC 57.367 40.909 2.81 0.00 35.75 3.01
50 51 3.886123 ACCTTGTGTGCTTACAACTTCT 58.114 40.909 2.81 0.00 35.75 2.85
51 52 3.877508 ACCTTGTGTGCTTACAACTTCTC 59.122 43.478 2.81 0.00 35.75 2.87
52 53 3.251004 CCTTGTGTGCTTACAACTTCTCC 59.749 47.826 2.81 0.00 35.75 3.71
53 54 3.552132 TGTGTGCTTACAACTTCTCCA 57.448 42.857 0.00 0.00 0.00 3.86
54 55 3.202906 TGTGTGCTTACAACTTCTCCAC 58.797 45.455 0.00 0.00 0.00 4.02
55 56 3.202906 GTGTGCTTACAACTTCTCCACA 58.797 45.455 0.00 0.00 0.00 4.17
56 57 3.625764 GTGTGCTTACAACTTCTCCACAA 59.374 43.478 0.00 0.00 34.06 3.33
57 58 3.625764 TGTGCTTACAACTTCTCCACAAC 59.374 43.478 0.00 0.00 0.00 3.32
58 59 3.877508 GTGCTTACAACTTCTCCACAACT 59.122 43.478 0.00 0.00 0.00 3.16
59 60 5.054477 GTGCTTACAACTTCTCCACAACTA 58.946 41.667 0.00 0.00 0.00 2.24
60 61 5.526111 GTGCTTACAACTTCTCCACAACTAA 59.474 40.000 0.00 0.00 0.00 2.24
61 62 5.758296 TGCTTACAACTTCTCCACAACTAAG 59.242 40.000 0.00 0.00 0.00 2.18
62 63 5.989777 GCTTACAACTTCTCCACAACTAAGA 59.010 40.000 0.00 0.00 0.00 2.10
63 64 6.651225 GCTTACAACTTCTCCACAACTAAGAT 59.349 38.462 0.00 0.00 0.00 2.40
64 65 7.148557 GCTTACAACTTCTCCACAACTAAGATC 60.149 40.741 0.00 0.00 0.00 2.75
65 66 6.426646 ACAACTTCTCCACAACTAAGATCT 57.573 37.500 0.00 0.00 0.00 2.75
66 67 6.831976 ACAACTTCTCCACAACTAAGATCTT 58.168 36.000 13.56 13.56 0.00 2.40
67 68 6.708054 ACAACTTCTCCACAACTAAGATCTTG 59.292 38.462 18.47 10.29 0.00 3.02
68 69 5.241662 ACTTCTCCACAACTAAGATCTTGC 58.758 41.667 18.47 0.00 0.00 4.01
69 70 4.207891 TCTCCACAACTAAGATCTTGCC 57.792 45.455 18.47 0.00 0.00 4.52
70 71 3.840666 TCTCCACAACTAAGATCTTGCCT 59.159 43.478 18.47 0.00 0.00 4.75
71 72 4.081420 TCTCCACAACTAAGATCTTGCCTC 60.081 45.833 18.47 0.00 0.00 4.70
72 73 3.840666 TCCACAACTAAGATCTTGCCTCT 59.159 43.478 18.47 0.00 0.00 3.69
73 74 4.081420 TCCACAACTAAGATCTTGCCTCTC 60.081 45.833 18.47 0.00 0.00 3.20
74 75 4.187694 CACAACTAAGATCTTGCCTCTCC 58.812 47.826 18.47 0.00 0.00 3.71
75 76 3.840666 ACAACTAAGATCTTGCCTCTCCA 59.159 43.478 18.47 0.00 0.00 3.86
76 77 4.472833 ACAACTAAGATCTTGCCTCTCCAT 59.527 41.667 18.47 0.00 0.00 3.41
77 78 5.663106 ACAACTAAGATCTTGCCTCTCCATA 59.337 40.000 18.47 0.00 0.00 2.74
78 79 5.799827 ACTAAGATCTTGCCTCTCCATAC 57.200 43.478 18.47 0.00 0.00 2.39
79 80 4.591072 ACTAAGATCTTGCCTCTCCATACC 59.409 45.833 18.47 0.00 0.00 2.73
80 81 3.342926 AGATCTTGCCTCTCCATACCT 57.657 47.619 0.00 0.00 0.00 3.08
81 82 4.477536 AGATCTTGCCTCTCCATACCTA 57.522 45.455 0.00 0.00 0.00 3.08
82 83 4.156477 AGATCTTGCCTCTCCATACCTAC 58.844 47.826 0.00 0.00 0.00 3.18
83 84 2.679082 TCTTGCCTCTCCATACCTACC 58.321 52.381 0.00 0.00 0.00 3.18
84 85 1.694696 CTTGCCTCTCCATACCTACCC 59.305 57.143 0.00 0.00 0.00 3.69
85 86 0.105142 TGCCTCTCCATACCTACCCC 60.105 60.000 0.00 0.00 0.00 4.95
86 87 0.836830 GCCTCTCCATACCTACCCCC 60.837 65.000 0.00 0.00 0.00 5.40
87 88 0.868186 CCTCTCCATACCTACCCCCT 59.132 60.000 0.00 0.00 0.00 4.79
88 89 2.079421 CCTCTCCATACCTACCCCCTA 58.921 57.143 0.00 0.00 0.00 3.53
89 90 2.225318 CCTCTCCATACCTACCCCCTAC 60.225 59.091 0.00 0.00 0.00 3.18
90 91 2.449730 CTCTCCATACCTACCCCCTACA 59.550 54.545 0.00 0.00 0.00 2.74
91 92 3.076735 TCTCCATACCTACCCCCTACAT 58.923 50.000 0.00 0.00 0.00 2.29
92 93 3.473621 TCTCCATACCTACCCCCTACATT 59.526 47.826 0.00 0.00 0.00 2.71
93 94 4.676036 TCTCCATACCTACCCCCTACATTA 59.324 45.833 0.00 0.00 0.00 1.90
94 95 4.755437 TCCATACCTACCCCCTACATTAC 58.245 47.826 0.00 0.00 0.00 1.89
95 96 4.424646 TCCATACCTACCCCCTACATTACT 59.575 45.833 0.00 0.00 0.00 2.24
96 97 4.530946 CCATACCTACCCCCTACATTACTG 59.469 50.000 0.00 0.00 0.00 2.74
97 98 3.790022 ACCTACCCCCTACATTACTGT 57.210 47.619 0.00 0.00 39.49 3.55
98 99 3.650948 ACCTACCCCCTACATTACTGTC 58.349 50.000 0.00 0.00 36.79 3.51
99 100 3.013188 ACCTACCCCCTACATTACTGTCA 59.987 47.826 0.00 0.00 36.79 3.58
100 101 3.641906 CCTACCCCCTACATTACTGTCAG 59.358 52.174 0.00 0.00 36.79 3.51
101 102 3.484953 ACCCCCTACATTACTGTCAGA 57.515 47.619 6.91 0.00 36.79 3.27
102 103 3.105283 ACCCCCTACATTACTGTCAGAC 58.895 50.000 6.91 0.00 36.79 3.51
103 104 3.246021 ACCCCCTACATTACTGTCAGACT 60.246 47.826 6.91 0.00 36.79 3.24
104 105 3.775316 CCCCCTACATTACTGTCAGACTT 59.225 47.826 6.91 0.00 36.79 3.01
105 106 4.960469 CCCCCTACATTACTGTCAGACTTA 59.040 45.833 6.91 0.00 36.79 2.24
106 107 5.069251 CCCCCTACATTACTGTCAGACTTAG 59.931 48.000 6.91 0.00 36.79 2.18
107 108 5.892119 CCCCTACATTACTGTCAGACTTAGA 59.108 44.000 6.91 0.00 36.79 2.10
108 109 6.380274 CCCCTACATTACTGTCAGACTTAGAA 59.620 42.308 6.91 0.00 36.79 2.10
109 110 7.259161 CCCTACATTACTGTCAGACTTAGAAC 58.741 42.308 6.91 0.00 36.79 3.01
110 111 7.259161 CCTACATTACTGTCAGACTTAGAACC 58.741 42.308 6.91 0.00 36.79 3.62
111 112 6.665992 ACATTACTGTCAGACTTAGAACCA 57.334 37.500 6.91 0.00 0.00 3.67
112 113 6.456501 ACATTACTGTCAGACTTAGAACCAC 58.543 40.000 6.91 0.00 0.00 4.16
113 114 3.644884 ACTGTCAGACTTAGAACCACG 57.355 47.619 6.91 0.00 0.00 4.94
114 115 3.220110 ACTGTCAGACTTAGAACCACGA 58.780 45.455 6.91 0.00 0.00 4.35
115 116 3.004524 ACTGTCAGACTTAGAACCACGAC 59.995 47.826 6.91 0.00 0.00 4.34
116 117 2.953648 TGTCAGACTTAGAACCACGACA 59.046 45.455 1.31 0.00 0.00 4.35
117 118 3.004419 TGTCAGACTTAGAACCACGACAG 59.996 47.826 1.31 0.00 0.00 3.51
118 119 3.004524 GTCAGACTTAGAACCACGACAGT 59.995 47.826 0.00 0.00 0.00 3.55
120 121 2.059541 GACTTAGAACCACGACAGTGC 58.940 52.381 0.00 0.00 46.62 4.40
121 122 1.411246 ACTTAGAACCACGACAGTGCA 59.589 47.619 0.00 0.00 46.62 4.57
122 123 1.792949 CTTAGAACCACGACAGTGCAC 59.207 52.381 9.40 9.40 46.62 4.57
123 124 0.747852 TAGAACCACGACAGTGCACA 59.252 50.000 21.04 0.00 46.62 4.57
124 125 0.810031 AGAACCACGACAGTGCACAC 60.810 55.000 21.04 9.03 46.62 3.82
125 126 1.078778 AACCACGACAGTGCACACA 60.079 52.632 21.04 0.00 46.62 3.72
126 127 0.463654 AACCACGACAGTGCACACAT 60.464 50.000 21.04 3.02 46.62 3.21
127 128 0.463654 ACCACGACAGTGCACACATT 60.464 50.000 21.04 0.00 46.62 2.71
128 129 0.662619 CCACGACAGTGCACACATTT 59.337 50.000 21.04 0.00 46.62 2.32
129 130 1.065401 CCACGACAGTGCACACATTTT 59.935 47.619 21.04 0.00 46.62 1.82
130 131 2.479389 CCACGACAGTGCACACATTTTT 60.479 45.455 21.04 0.00 46.62 1.94
150 151 5.982465 TTTTATGTGTTGGAAAAGCTTGC 57.018 34.783 0.00 0.00 0.00 4.01
151 152 4.935352 TTATGTGTTGGAAAAGCTTGCT 57.065 36.364 0.00 0.00 0.00 3.91
152 153 2.869233 TGTGTTGGAAAAGCTTGCTC 57.131 45.000 0.00 0.00 0.00 4.26
153 154 1.408702 TGTGTTGGAAAAGCTTGCTCC 59.591 47.619 17.35 17.35 0.00 4.70
154 155 1.408702 GTGTTGGAAAAGCTTGCTCCA 59.591 47.619 21.27 21.27 37.47 3.86
155 156 2.036346 GTGTTGGAAAAGCTTGCTCCAT 59.964 45.455 24.20 0.00 38.99 3.41
156 157 2.699846 TGTTGGAAAAGCTTGCTCCATT 59.300 40.909 24.20 5.10 38.99 3.16
157 158 3.134442 TGTTGGAAAAGCTTGCTCCATTT 59.866 39.130 24.20 4.41 38.99 2.32
158 159 4.129380 GTTGGAAAAGCTTGCTCCATTTT 58.871 39.130 24.20 3.72 38.99 1.82
159 160 3.993920 TGGAAAAGCTTGCTCCATTTTC 58.006 40.909 21.27 9.79 39.69 2.29
160 161 3.642848 TGGAAAAGCTTGCTCCATTTTCT 59.357 39.130 21.27 0.00 40.08 2.52
161 162 4.101430 TGGAAAAGCTTGCTCCATTTTCTT 59.899 37.500 21.27 0.00 40.08 2.52
162 163 5.304101 TGGAAAAGCTTGCTCCATTTTCTTA 59.696 36.000 21.27 2.46 40.08 2.10
163 164 6.014327 TGGAAAAGCTTGCTCCATTTTCTTAT 60.014 34.615 21.27 0.00 40.08 1.73
164 165 6.312180 GGAAAAGCTTGCTCCATTTTCTTATG 59.688 38.462 18.70 0.00 40.08 1.90
165 166 5.990120 AAGCTTGCTCCATTTTCTTATGT 57.010 34.783 0.00 0.00 0.00 2.29
166 167 5.990120 AGCTTGCTCCATTTTCTTATGTT 57.010 34.783 0.00 0.00 0.00 2.71
167 168 6.350629 AGCTTGCTCCATTTTCTTATGTTT 57.649 33.333 0.00 0.00 0.00 2.83
168 169 7.466746 AGCTTGCTCCATTTTCTTATGTTTA 57.533 32.000 0.00 0.00 0.00 2.01
169 170 7.542025 AGCTTGCTCCATTTTCTTATGTTTAG 58.458 34.615 0.00 0.00 0.00 1.85
170 171 7.394359 AGCTTGCTCCATTTTCTTATGTTTAGA 59.606 33.333 0.00 0.00 0.00 2.10
171 172 8.028938 GCTTGCTCCATTTTCTTATGTTTAGAA 58.971 33.333 0.00 0.00 0.00 2.10
172 173 9.912634 CTTGCTCCATTTTCTTATGTTTAGAAA 57.087 29.630 0.00 0.00 39.24 2.52
222 223 9.418045 CTAAATCCAAACAAATAAACCACGAAT 57.582 29.630 0.00 0.00 0.00 3.34
231 232 6.265876 ACAAATAAACCACGAATTGTTACCCT 59.734 34.615 0.00 0.00 0.00 4.34
232 233 6.904463 AATAAACCACGAATTGTTACCCTT 57.096 33.333 0.00 0.00 0.00 3.95
236 237 3.068560 CCACGAATTGTTACCCTTTCGA 58.931 45.455 14.84 0.00 42.55 3.71
237 238 3.120442 CCACGAATTGTTACCCTTTCGAC 60.120 47.826 14.84 0.00 42.55 4.20
238 239 3.744426 CACGAATTGTTACCCTTTCGACT 59.256 43.478 14.84 0.00 42.55 4.18
239 240 3.992427 ACGAATTGTTACCCTTTCGACTC 59.008 43.478 14.84 0.00 42.55 3.36
240 241 3.370061 CGAATTGTTACCCTTTCGACTCC 59.630 47.826 5.81 0.00 42.55 3.85
241 242 2.845363 TTGTTACCCTTTCGACTCCC 57.155 50.000 0.00 0.00 0.00 4.30
242 243 0.604578 TGTTACCCTTTCGACTCCCG 59.395 55.000 0.00 0.00 40.25 5.14
245 246 0.331278 TACCCTTTCGACTCCCGGTA 59.669 55.000 0.00 0.00 39.14 4.02
250 251 1.942657 CTTTCGACTCCCGGTATCGTA 59.057 52.381 16.07 6.76 39.14 3.43
257 258 2.224719 ACTCCCGGTATCGTACATAGCT 60.225 50.000 0.00 0.00 33.95 3.32
261 262 3.119919 CCCGGTATCGTACATAGCTTCTC 60.120 52.174 0.00 0.00 33.95 2.87
264 265 7.815603 CCGGTATCGTACATAGCTTCTCAGC 62.816 52.000 0.00 0.00 39.59 4.26
279 280 1.681264 CTCAGCCGAACAAAGGGTTTT 59.319 47.619 0.00 0.00 40.63 2.43
280 281 2.100749 CTCAGCCGAACAAAGGGTTTTT 59.899 45.455 0.00 0.00 40.63 1.94
288 289 1.136110 ACAAAGGGTTTTTCACGCCTG 59.864 47.619 0.00 0.00 39.22 4.85
316 317 1.676678 GCCACCGCCTATCTGTCTCA 61.677 60.000 0.00 0.00 0.00 3.27
324 325 3.068732 CGCCTATCTGTCTCATCTTCCAA 59.931 47.826 0.00 0.00 0.00 3.53
340 341 0.918983 CCAAGGTCTTAGGGCCATGA 59.081 55.000 6.18 0.00 0.00 3.07
355 356 1.414181 CCATGAAGGCGTAGTGGATCT 59.586 52.381 0.00 0.00 31.59 2.75
356 357 2.546795 CCATGAAGGCGTAGTGGATCTC 60.547 54.545 0.00 0.00 31.59 2.75
372 373 0.756294 TCTCGACAAAGGTTGGCAGA 59.244 50.000 0.00 0.00 39.16 4.26
409 410 9.573133 CTCCGTTTTTAGATGCTTTATTGAATT 57.427 29.630 0.00 0.00 0.00 2.17
440 442 5.007724 AGGTTTGTTTCTGCTTAGAAAGACG 59.992 40.000 2.93 0.00 38.32 4.18
443 445 3.741344 TGTTTCTGCTTAGAAAGACGAGC 59.259 43.478 2.93 0.00 38.32 5.03
445 447 2.171840 TCTGCTTAGAAAGACGAGCCT 58.828 47.619 0.00 0.00 33.77 4.58
449 451 2.611518 CTTAGAAAGACGAGCCTGTGG 58.388 52.381 0.00 0.00 0.00 4.17
473 475 4.723789 AGGCTCCCTGAAGATGAAATAAGA 59.276 41.667 0.00 0.00 29.57 2.10
491 493 2.398840 GATTCTTCCCGCCTAGCCCC 62.399 65.000 0.00 0.00 0.00 5.80
497 499 1.536662 CCCGCCTAGCCCCTATTCT 60.537 63.158 0.00 0.00 0.00 2.40
499 501 1.640917 CCGCCTAGCCCCTATTCTTA 58.359 55.000 0.00 0.00 0.00 2.10
501 503 1.968493 CGCCTAGCCCCTATTCTTACA 59.032 52.381 0.00 0.00 0.00 2.41
511 513 5.452077 GCCCCTATTCTTACAGTGTGTCTAG 60.452 48.000 5.88 0.00 0.00 2.43
515 517 3.826236 TCTTACAGTGTGTCTAGCGTC 57.174 47.619 5.88 0.00 0.00 5.19
542 544 0.666577 GGCGTGTGTAGGTGTGTCTC 60.667 60.000 0.00 0.00 0.00 3.36
545 547 0.956633 GTGTGTAGGTGTGTCTCCGA 59.043 55.000 0.00 0.00 0.00 4.55
559 561 2.028930 GTCTCCGACAGACCTTCACATT 60.029 50.000 3.69 0.00 45.47 2.71
576 578 5.306394 TCACATTATTTGGTCGGTGTTGTA 58.694 37.500 0.00 0.00 0.00 2.41
610 612 3.091545 GCTGGGATCCAATCTTTGTTCA 58.908 45.455 15.23 0.00 30.80 3.18
631 642 9.495572 TGTTCATATGTGTTTATGTGTTACAGA 57.504 29.630 1.90 0.00 32.49 3.41
638 649 8.402798 TGTGTTTATGTGTTACAGATTGGATT 57.597 30.769 0.00 0.00 0.00 3.01
639 650 8.855110 TGTGTTTATGTGTTACAGATTGGATTT 58.145 29.630 0.00 0.00 0.00 2.17
648 659 9.788960 GTGTTACAGATTGGATTTTTCTAATCC 57.211 33.333 9.13 9.13 44.99 3.01
778 789 2.863401 AAAAAGTGCACCTTCGGTTC 57.137 45.000 14.63 0.00 31.02 3.62
780 791 1.757682 AAAGTGCACCTTCGGTTCAA 58.242 45.000 14.63 0.00 29.65 2.69
782 793 1.238439 AGTGCACCTTCGGTTCAATG 58.762 50.000 14.63 0.00 29.65 2.82
783 794 0.951558 GTGCACCTTCGGTTCAATGT 59.048 50.000 5.22 0.00 29.65 2.71
784 795 1.336755 GTGCACCTTCGGTTCAATGTT 59.663 47.619 5.22 0.00 29.65 2.71
785 796 1.336440 TGCACCTTCGGTTCAATGTTG 59.664 47.619 0.00 0.00 31.02 3.33
786 797 1.336755 GCACCTTCGGTTCAATGTTGT 59.663 47.619 0.00 0.00 31.02 3.32
787 798 2.858260 GCACCTTCGGTTCAATGTTGTG 60.858 50.000 0.00 0.00 31.02 3.33
788 799 2.357637 CACCTTCGGTTCAATGTTGTGT 59.642 45.455 0.00 0.00 31.02 3.72
789 800 3.020984 ACCTTCGGTTCAATGTTGTGTT 58.979 40.909 0.00 0.00 27.29 3.32
790 801 3.066203 ACCTTCGGTTCAATGTTGTGTTC 59.934 43.478 0.00 0.00 27.29 3.18
796 807 4.607557 CGGTTCAATGTTGTGTTCGTAGTC 60.608 45.833 0.00 0.00 0.00 2.59
798 809 3.708890 TCAATGTTGTGTTCGTAGTCGT 58.291 40.909 0.00 0.00 38.33 4.34
807 818 2.164427 GTTCGTAGTCGTCGCTAAGTG 58.836 52.381 8.53 0.00 38.33 3.16
814 825 0.723414 TCGTCGCTAAGTGGTCTACG 59.277 55.000 0.00 0.00 0.00 3.51
816 827 1.267433 CGTCGCTAAGTGGTCTACGAG 60.267 57.143 0.00 0.00 0.00 4.18
818 829 2.005451 TCGCTAAGTGGTCTACGAGTC 58.995 52.381 0.00 0.00 0.00 3.36
821 832 3.008330 GCTAAGTGGTCTACGAGTCTGA 58.992 50.000 0.00 0.00 0.00 3.27
832 843 6.237861 GGTCTACGAGTCTGAATGTAATTTGC 60.238 42.308 0.00 0.00 36.07 3.68
837 848 6.312918 ACGAGTCTGAATGTAATTTGCGTTAT 59.687 34.615 0.00 0.00 36.07 1.89
859 870 2.741122 TTTGGCGTTGTTTCGTACTG 57.259 45.000 0.00 0.00 0.00 2.74
860 871 1.937278 TTGGCGTTGTTTCGTACTGA 58.063 45.000 0.00 0.00 0.00 3.41
861 872 1.210870 TGGCGTTGTTTCGTACTGAC 58.789 50.000 0.00 0.00 0.00 3.51
874 885 4.422997 CGTACTGACGTTTGATGCATAG 57.577 45.455 0.00 0.00 44.31 2.23
876 887 4.740205 CGTACTGACGTTTGATGCATAGAT 59.260 41.667 0.00 0.00 44.31 1.98
877 888 5.108217 CGTACTGACGTTTGATGCATAGATC 60.108 44.000 0.00 0.00 44.31 2.75
878 889 3.798878 ACTGACGTTTGATGCATAGATCG 59.201 43.478 0.00 5.75 0.00 3.69
902 913 6.528072 CGAAAATCCAAACAAATAAGCTCCTC 59.472 38.462 0.00 0.00 0.00 3.71
1076 1100 1.638467 GCTCACGCGCTTATTCCTG 59.362 57.895 5.73 0.00 0.00 3.86
1078 1102 1.079474 TCACGCGCTTATTCCTGCA 60.079 52.632 5.73 0.00 0.00 4.41
1101 1125 3.335534 GTGTTCGACGCAGCGGTT 61.336 61.111 21.15 0.00 0.00 4.44
1279 1303 8.856153 TTTGGTTCAGTTATCTGTGCTATTAA 57.144 30.769 0.83 0.00 41.91 1.40
1398 1544 7.169158 TGCACTTTAAGCTTTATATTTGCCT 57.831 32.000 3.20 0.00 0.00 4.75
1771 1922 4.162509 AGGACTAGGCTCCATTTGTAGTTC 59.837 45.833 0.00 0.00 31.94 3.01
1800 1952 4.143137 CGCTTAAACATCAAATTTGTGGGC 60.143 41.667 17.47 12.89 0.00 5.36
1813 1965 1.139498 TGTGGGCATGGAGAGGGAAA 61.139 55.000 0.00 0.00 0.00 3.13
1995 2147 5.144692 TCTGGATTCAAGTCAGTCTTCAG 57.855 43.478 0.00 0.00 33.63 3.02
2339 2494 5.311265 TGATTGATCTCCTTGATGTATGCC 58.689 41.667 0.00 0.00 35.14 4.40
2346 2501 5.402630 TCTCCTTGATGTATGCCCATACTA 58.597 41.667 16.73 6.53 43.04 1.82
2347 2502 6.025539 TCTCCTTGATGTATGCCCATACTAT 58.974 40.000 16.73 10.07 43.04 2.12
2385 2540 2.622942 GGTTGATGTTTGCAGTCAGGAA 59.377 45.455 0.00 0.00 0.00 3.36
2781 2939 8.653338 GTTATACTCGTTTTTATGTTGCAGAGA 58.347 33.333 0.00 0.00 0.00 3.10
3148 3306 3.641437 TTTGAGGACGAAATTTGCAGG 57.359 42.857 0.00 0.00 0.00 4.85
3204 3362 3.220110 CCTTATTGGATGATGCTGCTGT 58.780 45.455 0.00 0.00 38.35 4.40
3301 3459 6.480763 TGCATAATGACCTTCTCCTTTGTTA 58.519 36.000 0.00 0.00 0.00 2.41
3324 3482 9.555727 GTTAACCATAGAATTATAGTCAAGGCA 57.444 33.333 0.00 0.00 0.00 4.75
3718 3932 9.961265 CAAACTGAATTGCTGATATCATGTAAT 57.039 29.630 5.72 8.82 0.00 1.89
3851 4065 5.757320 CAGAATTATCTCCTGACATGTCCAC 59.243 44.000 22.85 0.00 32.03 4.02
4897 5198 9.258629 TCAAATGACCATCATAGGAAAAATTCT 57.741 29.630 0.00 0.00 35.76 2.40
5112 5413 3.754965 ACAGCCTCTTGCAGAAATGTAA 58.245 40.909 0.00 0.00 44.83 2.41
5352 5653 7.765695 AATTGTTTGCTTCTCCTCTTAATGA 57.234 32.000 0.00 0.00 0.00 2.57
5485 5786 4.319766 GCATGATGCTAGTTTATTGACCGG 60.320 45.833 10.72 0.00 40.96 5.28
5610 5952 2.860582 GCAGGAAGTAGCTCGTATGCTC 60.861 54.545 0.00 0.00 42.97 4.26
5796 6138 6.889301 AGATATGGTGCATTCAATGTAAGG 57.111 37.500 0.00 0.00 0.00 2.69
5810 6152 8.519799 TTCAATGTAAGGTCACTTCTTTTTCT 57.480 30.769 0.00 0.00 38.14 2.52
6112 6466 3.007940 AGCACTGTTGATTACTGTAGCCA 59.992 43.478 0.00 0.00 36.87 4.75
6154 6508 5.072055 CCACACATTATATTCCAGCCATGA 58.928 41.667 0.00 0.00 0.00 3.07
6446 6800 0.802607 CGCGGCCAGAGTCTACTTTC 60.803 60.000 2.24 0.00 0.00 2.62
6569 6923 4.626529 GCCTACCAAGCTCATTTCCTTACT 60.627 45.833 0.00 0.00 0.00 2.24
6763 7117 8.363761 AGTACAAAGGTAGCTTCTAGTTATGT 57.636 34.615 7.80 9.10 0.00 2.29
6772 7126 5.779922 AGCTTCTAGTTATGTGAAACGACA 58.220 37.500 0.00 0.00 42.39 4.35
6871 7226 4.141620 ACTGTGGATTGGACCTCATCATAC 60.142 45.833 6.58 5.69 33.84 2.39
6880 7235 5.386060 TGGACCTCATCATACGTCTATCTT 58.614 41.667 0.00 0.00 0.00 2.40
6986 7341 1.320555 CTACGAACCAATCAAGCGACG 59.679 52.381 0.00 0.00 0.00 5.12
6999 7354 0.951558 AGCGACGAGGCAATTTGTTT 59.048 45.000 0.00 0.00 34.64 2.83
7010 7365 2.933769 CAATTTGTTTGCCGAGGAGTC 58.066 47.619 0.00 0.00 0.00 3.36
7019 7374 2.362632 CGAGGAGTCGGGGGACTT 60.363 66.667 0.00 0.00 42.87 3.01
7035 7390 2.079925 GACTTGGGCTTGTCATCAGAC 58.920 52.381 0.00 0.00 45.19 3.51
7048 7403 1.600013 CATCAGACGTCTACTCTCCCG 59.400 57.143 19.57 3.12 0.00 5.14
7068 7423 2.920640 CACGATTGCAGCATTGACG 58.079 52.632 0.00 2.74 0.00 4.35
7106 7470 0.035439 AATCGGCACCGGAATTGAGT 60.035 50.000 9.46 0.00 40.25 3.41
7112 7476 1.026718 CACCGGAATTGAGTGGGCTC 61.027 60.000 9.46 0.00 41.97 4.70
7159 7523 3.003173 TAGAGCGCCAGGGCAGTT 61.003 61.111 11.42 1.26 42.06 3.16
7165 7529 1.750399 CGCCAGGGCAGTTGCTATT 60.750 57.895 11.42 0.00 42.06 1.73
7168 7532 0.323725 CCAGGGCAGTTGCTATTGGT 60.324 55.000 3.88 0.00 41.70 3.67
7189 7553 0.323360 GGGGACTGTATTGGCTGCAA 60.323 55.000 0.50 0.00 0.00 4.08
7190 7554 0.811281 GGGACTGTATTGGCTGCAAC 59.189 55.000 0.50 0.00 0.00 4.17
7203 7567 2.286831 GGCTGCAACTGATGATTGATCG 60.287 50.000 0.50 0.00 33.17 3.69
7268 7632 3.418094 GACTGATGTAGAGTTCGTGTCG 58.582 50.000 0.00 0.00 0.00 4.35
7269 7633 2.812591 ACTGATGTAGAGTTCGTGTCGT 59.187 45.455 0.00 0.00 0.00 4.34
7270 7634 3.164358 CTGATGTAGAGTTCGTGTCGTG 58.836 50.000 0.00 0.00 0.00 4.35
7271 7635 2.551032 TGATGTAGAGTTCGTGTCGTGT 59.449 45.455 0.00 0.00 0.00 4.49
7272 7636 2.675767 TGTAGAGTTCGTGTCGTGTC 57.324 50.000 0.00 0.00 0.00 3.67
7326 7690 0.478072 ATGTGCTCTGGTGGGTCAAA 59.522 50.000 0.00 0.00 0.00 2.69
7330 7697 0.244721 GCTCTGGTGGGTCAAATTGC 59.755 55.000 0.00 0.00 0.00 3.56
7344 7711 2.948979 CAAATTGCGGGCCTTAGTCATA 59.051 45.455 0.84 0.00 0.00 2.15
7347 7714 1.040646 TGCGGGCCTTAGTCATAGAG 58.959 55.000 0.84 0.00 0.00 2.43
7351 7718 3.244249 GCGGGCCTTAGTCATAGAGAAAT 60.244 47.826 0.84 0.00 0.00 2.17
7352 7719 4.561105 CGGGCCTTAGTCATAGAGAAATC 58.439 47.826 0.84 0.00 0.00 2.17
7353 7720 4.561734 CGGGCCTTAGTCATAGAGAAATCC 60.562 50.000 0.84 0.00 0.00 3.01
7354 7721 4.561105 GGCCTTAGTCATAGAGAAATCCG 58.439 47.826 0.00 0.00 0.00 4.18
7355 7722 4.561105 GCCTTAGTCATAGAGAAATCCGG 58.439 47.826 0.00 0.00 0.00 5.14
7356 7723 4.281182 GCCTTAGTCATAGAGAAATCCGGA 59.719 45.833 6.61 6.61 0.00 5.14
7357 7724 5.774630 CCTTAGTCATAGAGAAATCCGGAC 58.225 45.833 6.12 0.00 0.00 4.79
7358 7725 5.536916 CCTTAGTCATAGAGAAATCCGGACT 59.463 44.000 6.12 0.00 37.79 3.85
7359 7726 6.041069 CCTTAGTCATAGAGAAATCCGGACTT 59.959 42.308 6.12 0.00 35.85 3.01
7360 7727 5.523438 AGTCATAGAGAAATCCGGACTTC 57.477 43.478 17.78 17.78 30.53 3.01
7361 7728 4.342665 AGTCATAGAGAAATCCGGACTTCC 59.657 45.833 21.42 13.05 30.53 3.46
7362 7729 4.342665 GTCATAGAGAAATCCGGACTTCCT 59.657 45.833 21.42 18.82 0.00 3.36
7363 7730 4.962995 TCATAGAGAAATCCGGACTTCCTT 59.037 41.667 21.42 12.56 0.00 3.36
7364 7731 5.425539 TCATAGAGAAATCCGGACTTCCTTT 59.574 40.000 21.42 10.80 0.00 3.11
7365 7732 4.642466 AGAGAAATCCGGACTTCCTTTT 57.358 40.909 21.42 10.04 0.00 2.27
7366 7733 4.986783 AGAGAAATCCGGACTTCCTTTTT 58.013 39.130 21.42 9.29 0.00 1.94
7403 7770 2.726832 TTTTTGCGGGTAAAATCCGG 57.273 45.000 0.00 0.00 46.86 5.14
7404 7771 1.906990 TTTTGCGGGTAAAATCCGGA 58.093 45.000 6.61 6.61 46.86 5.14
7405 7772 4.621832 TGCGGGTAAAATCCGGAC 57.378 55.556 6.12 0.00 46.86 4.79
7406 7773 1.984817 TGCGGGTAAAATCCGGACT 59.015 52.632 6.12 0.00 46.86 3.85
7430 7797 3.365969 CCGGAGTTATGTTTGGCAGAAAC 60.366 47.826 0.00 4.11 29.31 2.78
7443 7810 2.098770 GGCAGAAACATCTCTTCCATGC 59.901 50.000 0.00 0.00 29.90 4.06
7463 7853 2.785562 CGTGGATTTTTGTGGAGGGTA 58.214 47.619 0.00 0.00 0.00 3.69
7497 7887 2.814336 GAGCTGGGGAACAAGTAACTTG 59.186 50.000 0.00 0.00 45.85 3.16
7525 7932 7.989741 AGATATTTATATCCTGAAATCTGGCCG 59.010 37.037 0.00 0.00 39.94 6.13
7551 7958 3.426695 GCTAATTTGATTCGTGCTGCTGT 60.427 43.478 0.00 0.00 0.00 4.40
7561 7968 2.046313 CGTGCTGCTGTGCTTTTTAAG 58.954 47.619 0.00 0.00 0.00 1.85
7578 7985 7.542824 GCTTTTTAAGGCGGTTTTGTGATTATA 59.457 33.333 0.00 0.00 0.00 0.98
7625 9653 2.783379 ACTCTGGCCATAGAGGATCA 57.217 50.000 23.93 0.00 46.69 2.92
7781 9810 3.470709 CCAAGTTGCCATCGTCATCTAT 58.529 45.455 0.00 0.00 0.00 1.98
7782 9811 3.249320 CCAAGTTGCCATCGTCATCTATG 59.751 47.826 0.00 0.00 0.00 2.23
7783 9812 4.122046 CAAGTTGCCATCGTCATCTATGA 58.878 43.478 0.00 0.00 0.00 2.15
7784 9813 4.406648 AGTTGCCATCGTCATCTATGAA 57.593 40.909 0.00 0.00 38.75 2.57
7785 9814 4.122776 AGTTGCCATCGTCATCTATGAAC 58.877 43.478 0.00 0.00 38.75 3.18
7786 9815 3.817709 TGCCATCGTCATCTATGAACA 57.182 42.857 0.00 0.00 38.75 3.18
7787 9816 3.457234 TGCCATCGTCATCTATGAACAC 58.543 45.455 0.00 0.00 38.75 3.32
7838 9867 3.357079 CCAAGTGGGCGTGAGTGC 61.357 66.667 0.00 0.00 0.00 4.40
7839 9868 2.591429 CAAGTGGGCGTGAGTGCA 60.591 61.111 0.00 0.00 36.28 4.57
7851 9880 2.076100 GTGAGTGCATTTCATCGGTCA 58.924 47.619 7.08 0.00 0.00 4.02
7852 9881 2.076100 TGAGTGCATTTCATCGGTCAC 58.924 47.619 0.00 0.00 0.00 3.67
7853 9882 2.289631 TGAGTGCATTTCATCGGTCACT 60.290 45.455 0.00 0.00 37.47 3.41
7855 9884 3.932710 GAGTGCATTTCATCGGTCACTAA 59.067 43.478 0.00 0.00 35.23 2.24
7856 9885 4.323417 AGTGCATTTCATCGGTCACTAAA 58.677 39.130 0.00 0.00 33.56 1.85
7857 9886 4.154195 AGTGCATTTCATCGGTCACTAAAC 59.846 41.667 0.00 0.00 33.56 2.01
7859 9888 3.369756 GCATTTCATCGGTCACTAAACGA 59.630 43.478 0.00 0.00 41.20 3.85
7860 9889 4.492570 GCATTTCATCGGTCACTAAACGAG 60.493 45.833 0.00 0.00 40.21 4.18
7861 9890 3.928727 TTCATCGGTCACTAAACGAGT 57.071 42.857 0.00 0.00 40.21 4.18
7862 9891 3.928727 TCATCGGTCACTAAACGAGTT 57.071 42.857 0.00 0.00 40.21 3.01
7864 9893 3.253921 TCATCGGTCACTAAACGAGTTCA 59.746 43.478 0.00 0.00 40.21 3.18
7866 9895 3.571571 TCGGTCACTAAACGAGTTCATG 58.428 45.455 0.00 0.00 35.64 3.07
7868 9897 3.064207 GGTCACTAAACGAGTTCATGCA 58.936 45.455 0.00 0.00 35.64 3.96
7870 9899 4.377431 GGTCACTAAACGAGTTCATGCAAG 60.377 45.833 0.00 0.00 35.64 4.01
7871 9900 3.745975 TCACTAAACGAGTTCATGCAAGG 59.254 43.478 0.00 0.00 35.64 3.61
7872 9901 3.745975 CACTAAACGAGTTCATGCAAGGA 59.254 43.478 0.00 0.00 35.64 3.36
7889 10263 3.515602 AGGAACTTTCAGGAGTGCAAT 57.484 42.857 0.00 0.00 27.25 3.56
7899 10273 1.873591 AGGAGTGCAATGTTTGTCGAC 59.126 47.619 9.11 9.11 0.00 4.20
7931 10305 2.993899 GTCTCATTACCGGTTCACACAG 59.006 50.000 15.04 1.70 0.00 3.66
7947 10321 3.430218 CACACAGTTCTCCAGATTTCGTC 59.570 47.826 0.00 0.00 0.00 4.20
7948 10322 3.322254 ACACAGTTCTCCAGATTTCGTCT 59.678 43.478 0.00 0.00 37.80 4.18
7949 10323 4.202264 ACACAGTTCTCCAGATTTCGTCTT 60.202 41.667 0.00 0.00 34.00 3.01
7950 10324 5.010719 ACACAGTTCTCCAGATTTCGTCTTA 59.989 40.000 0.00 0.00 34.00 2.10
7951 10325 5.346281 CACAGTTCTCCAGATTTCGTCTTAC 59.654 44.000 0.00 0.00 34.00 2.34
7952 10326 5.010719 ACAGTTCTCCAGATTTCGTCTTACA 59.989 40.000 0.00 0.00 34.00 2.41
7953 10327 5.346281 CAGTTCTCCAGATTTCGTCTTACAC 59.654 44.000 0.00 0.00 34.00 2.90
7954 10328 5.244178 AGTTCTCCAGATTTCGTCTTACACT 59.756 40.000 0.00 0.00 34.00 3.55
7955 10329 5.723672 TCTCCAGATTTCGTCTTACACTT 57.276 39.130 0.00 0.00 34.00 3.16
7956 10330 5.710984 TCTCCAGATTTCGTCTTACACTTC 58.289 41.667 0.00 0.00 34.00 3.01
7957 10331 4.482386 TCCAGATTTCGTCTTACACTTCG 58.518 43.478 0.00 0.00 34.00 3.79
7958 10332 4.022589 TCCAGATTTCGTCTTACACTTCGT 60.023 41.667 0.00 0.00 34.00 3.85
7959 10333 5.181811 TCCAGATTTCGTCTTACACTTCGTA 59.818 40.000 0.00 0.00 34.00 3.43
7975 10349 7.584987 ACACTTCGTAAAAATTTCAGATGAGG 58.415 34.615 0.00 0.00 0.00 3.86
8047 10424 3.879892 GAGAGATCACCAAAATAGCACCC 59.120 47.826 0.00 0.00 0.00 4.61
8048 10425 3.266772 AGAGATCACCAAAATAGCACCCA 59.733 43.478 0.00 0.00 0.00 4.51
8049 10426 3.356290 AGATCACCAAAATAGCACCCAC 58.644 45.455 0.00 0.00 0.00 4.61
8050 10427 1.529226 TCACCAAAATAGCACCCACG 58.471 50.000 0.00 0.00 0.00 4.94
8051 10428 1.072489 TCACCAAAATAGCACCCACGA 59.928 47.619 0.00 0.00 0.00 4.35
8052 10429 1.883275 CACCAAAATAGCACCCACGAA 59.117 47.619 0.00 0.00 0.00 3.85
8053 10430 2.294791 CACCAAAATAGCACCCACGAAA 59.705 45.455 0.00 0.00 0.00 3.46
8054 10431 3.056891 CACCAAAATAGCACCCACGAAAT 60.057 43.478 0.00 0.00 0.00 2.17
8055 10432 3.056891 ACCAAAATAGCACCCACGAAATG 60.057 43.478 0.00 0.00 0.00 2.32
8056 10433 2.923020 CAAAATAGCACCCACGAAATGC 59.077 45.455 0.00 0.00 39.74 3.56
8057 10434 1.832883 AATAGCACCCACGAAATGCA 58.167 45.000 0.00 0.00 41.97 3.96
8058 10435 1.832883 ATAGCACCCACGAAATGCAA 58.167 45.000 0.00 0.00 41.97 4.08
8059 10436 1.610363 TAGCACCCACGAAATGCAAA 58.390 45.000 0.00 0.00 41.97 3.68
8060 10437 0.968405 AGCACCCACGAAATGCAAAT 59.032 45.000 0.00 0.00 41.97 2.32
8061 10438 1.344114 AGCACCCACGAAATGCAAATT 59.656 42.857 0.00 0.00 41.97 1.82
8062 10439 1.460359 GCACCCACGAAATGCAAATTG 59.540 47.619 0.00 0.00 39.23 2.32
8063 10440 2.067766 CACCCACGAAATGCAAATTGG 58.932 47.619 0.00 0.00 0.00 3.16
8064 10441 1.691434 ACCCACGAAATGCAAATTGGT 59.309 42.857 0.00 0.00 0.00 3.67
8065 10442 2.103941 ACCCACGAAATGCAAATTGGTT 59.896 40.909 0.00 0.00 0.00 3.67
8066 10443 2.736192 CCCACGAAATGCAAATTGGTTC 59.264 45.455 0.00 0.00 0.00 3.62
8067 10444 3.388308 CCACGAAATGCAAATTGGTTCA 58.612 40.909 0.00 0.00 0.00 3.18
8068 10445 3.184178 CCACGAAATGCAAATTGGTTCAC 59.816 43.478 0.00 0.00 0.00 3.18
8069 10446 3.184178 CACGAAATGCAAATTGGTTCACC 59.816 43.478 0.00 0.00 0.00 4.02
8070 10447 3.181471 ACGAAATGCAAATTGGTTCACCA 60.181 39.130 0.00 0.00 45.94 4.17
8082 10459 3.568443 TGGTTCACCACAGACTACTACA 58.432 45.455 0.00 0.00 42.01 2.74
8083 10460 3.319972 TGGTTCACCACAGACTACTACAC 59.680 47.826 0.00 0.00 42.01 2.90
8084 10461 3.305881 GGTTCACCACAGACTACTACACC 60.306 52.174 0.00 0.00 35.64 4.16
8085 10462 3.232720 TCACCACAGACTACTACACCA 57.767 47.619 0.00 0.00 0.00 4.17
8086 10463 2.889045 TCACCACAGACTACTACACCAC 59.111 50.000 0.00 0.00 0.00 4.16
8087 10464 1.884579 ACCACAGACTACTACACCACG 59.115 52.381 0.00 0.00 0.00 4.94
8088 10465 1.402456 CCACAGACTACTACACCACGC 60.402 57.143 0.00 0.00 0.00 5.34
8089 10466 1.268625 CACAGACTACTACACCACGCA 59.731 52.381 0.00 0.00 0.00 5.24
8090 10467 2.094700 CACAGACTACTACACCACGCAT 60.095 50.000 0.00 0.00 0.00 4.73
8091 10468 2.094700 ACAGACTACTACACCACGCATG 60.095 50.000 0.00 0.00 0.00 4.06
8092 10469 2.163613 CAGACTACTACACCACGCATGA 59.836 50.000 0.00 0.00 0.00 3.07
8093 10470 2.823747 AGACTACTACACCACGCATGAA 59.176 45.455 0.00 0.00 0.00 2.57
8094 10471 3.447586 AGACTACTACACCACGCATGAAT 59.552 43.478 0.00 0.00 0.00 2.57
8095 10472 3.521560 ACTACTACACCACGCATGAATG 58.478 45.455 0.00 0.00 0.00 2.67
8096 10473 2.760634 ACTACACCACGCATGAATGA 57.239 45.000 0.00 0.00 0.00 2.57
8097 10474 3.052455 ACTACACCACGCATGAATGAA 57.948 42.857 0.00 0.00 0.00 2.57
8098 10475 2.742053 ACTACACCACGCATGAATGAAC 59.258 45.455 0.00 0.00 0.00 3.18
8099 10476 0.516877 ACACCACGCATGAATGAACG 59.483 50.000 0.00 0.00 0.00 3.95
8100 10477 0.179192 CACCACGCATGAATGAACGG 60.179 55.000 0.00 0.00 0.00 4.44
8101 10478 0.605319 ACCACGCATGAATGAACGGT 60.605 50.000 0.00 0.00 0.00 4.83
8102 10479 0.521291 CCACGCATGAATGAACGGTT 59.479 50.000 0.00 0.00 0.00 4.44
8103 10480 1.735018 CCACGCATGAATGAACGGTTA 59.265 47.619 0.00 0.00 0.00 2.85
8104 10481 2.475519 CCACGCATGAATGAACGGTTAC 60.476 50.000 0.00 0.00 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.486211 TAGGCCCTTCTCGGAGAAAG 58.514 55.000 20.08 14.50 33.19 2.62
1 2 1.946984 TTAGGCCCTTCTCGGAGAAA 58.053 50.000 20.08 2.93 33.19 2.52
2 3 1.553704 GTTTAGGCCCTTCTCGGAGAA 59.446 52.381 18.74 18.74 34.09 2.87
3 4 1.192428 GTTTAGGCCCTTCTCGGAGA 58.808 55.000 2.97 2.97 33.16 3.71
4 5 1.196012 AGTTTAGGCCCTTCTCGGAG 58.804 55.000 0.00 0.00 33.16 4.63
5 6 1.278127 CAAGTTTAGGCCCTTCTCGGA 59.722 52.381 0.00 0.00 33.16 4.55
6 7 1.003233 ACAAGTTTAGGCCCTTCTCGG 59.997 52.381 0.00 0.00 0.00 4.63
7 8 2.474410 ACAAGTTTAGGCCCTTCTCG 57.526 50.000 0.00 0.00 0.00 4.04
8 9 4.458295 GGTTTACAAGTTTAGGCCCTTCTC 59.542 45.833 0.00 0.00 0.00 2.87
9 10 4.105858 AGGTTTACAAGTTTAGGCCCTTCT 59.894 41.667 0.00 0.00 0.00 2.85
10 11 4.404640 AGGTTTACAAGTTTAGGCCCTTC 58.595 43.478 0.00 0.00 0.00 3.46
11 12 4.464652 AGGTTTACAAGTTTAGGCCCTT 57.535 40.909 0.00 0.00 0.00 3.95
12 13 4.149598 CAAGGTTTACAAGTTTAGGCCCT 58.850 43.478 0.00 0.00 0.00 5.19
13 14 3.893200 ACAAGGTTTACAAGTTTAGGCCC 59.107 43.478 0.00 0.00 0.00 5.80
14 15 4.340097 ACACAAGGTTTACAAGTTTAGGCC 59.660 41.667 0.00 0.00 0.00 5.19
15 16 5.278604 CACACAAGGTTTACAAGTTTAGGC 58.721 41.667 0.00 0.00 0.00 3.93
16 17 5.067283 AGCACACAAGGTTTACAAGTTTAGG 59.933 40.000 0.00 0.00 0.00 2.69
17 18 6.131544 AGCACACAAGGTTTACAAGTTTAG 57.868 37.500 0.00 0.00 0.00 1.85
18 19 6.518208 AAGCACACAAGGTTTACAAGTTTA 57.482 33.333 0.00 0.00 0.00 2.01
19 20 5.400066 AAGCACACAAGGTTTACAAGTTT 57.600 34.783 0.00 0.00 0.00 2.66
20 21 5.416326 TGTAAGCACACAAGGTTTACAAGTT 59.584 36.000 0.00 0.00 0.00 2.66
21 22 4.944930 TGTAAGCACACAAGGTTTACAAGT 59.055 37.500 0.00 0.00 0.00 3.16
22 23 5.493133 TGTAAGCACACAAGGTTTACAAG 57.507 39.130 0.00 0.00 0.00 3.16
23 24 5.416326 AGTTGTAAGCACACAAGGTTTACAA 59.584 36.000 9.48 9.48 39.02 2.41
24 25 4.944930 AGTTGTAAGCACACAAGGTTTACA 59.055 37.500 3.61 0.00 39.02 2.41
25 26 5.494632 AGTTGTAAGCACACAAGGTTTAC 57.505 39.130 3.61 0.00 39.02 2.01
26 27 5.883673 AGAAGTTGTAAGCACACAAGGTTTA 59.116 36.000 3.61 0.00 39.02 2.01
27 28 4.705023 AGAAGTTGTAAGCACACAAGGTTT 59.295 37.500 3.61 0.59 39.02 3.27
28 29 4.270008 AGAAGTTGTAAGCACACAAGGTT 58.730 39.130 3.61 1.70 39.02 3.50
29 30 3.877508 GAGAAGTTGTAAGCACACAAGGT 59.122 43.478 3.61 0.00 39.02 3.50
30 31 3.251004 GGAGAAGTTGTAAGCACACAAGG 59.749 47.826 3.61 0.00 39.02 3.61
31 32 3.876914 TGGAGAAGTTGTAAGCACACAAG 59.123 43.478 3.61 0.00 39.02 3.16
32 33 3.625764 GTGGAGAAGTTGTAAGCACACAA 59.374 43.478 0.00 0.00 36.08 3.33
33 34 3.202906 GTGGAGAAGTTGTAAGCACACA 58.797 45.455 0.00 0.00 33.30 3.72
34 35 3.202906 TGTGGAGAAGTTGTAAGCACAC 58.797 45.455 0.00 0.00 33.30 3.82
35 36 3.552132 TGTGGAGAAGTTGTAAGCACA 57.448 42.857 0.00 0.00 0.00 4.57
36 37 3.877508 AGTTGTGGAGAAGTTGTAAGCAC 59.122 43.478 0.00 0.00 0.00 4.40
37 38 4.150897 AGTTGTGGAGAAGTTGTAAGCA 57.849 40.909 0.00 0.00 0.00 3.91
38 39 5.989777 TCTTAGTTGTGGAGAAGTTGTAAGC 59.010 40.000 0.00 0.00 0.00 3.09
39 40 8.091449 AGATCTTAGTTGTGGAGAAGTTGTAAG 58.909 37.037 0.00 0.00 0.00 2.34
40 41 7.963532 AGATCTTAGTTGTGGAGAAGTTGTAA 58.036 34.615 0.00 0.00 0.00 2.41
41 42 7.540474 AGATCTTAGTTGTGGAGAAGTTGTA 57.460 36.000 0.00 0.00 0.00 2.41
42 43 6.426646 AGATCTTAGTTGTGGAGAAGTTGT 57.573 37.500 0.00 0.00 0.00 3.32
43 44 6.348050 GCAAGATCTTAGTTGTGGAGAAGTTG 60.348 42.308 7.86 0.00 0.00 3.16
44 45 5.703130 GCAAGATCTTAGTTGTGGAGAAGTT 59.297 40.000 7.86 0.00 0.00 2.66
45 46 5.241662 GCAAGATCTTAGTTGTGGAGAAGT 58.758 41.667 7.86 0.00 0.00 3.01
46 47 4.633565 GGCAAGATCTTAGTTGTGGAGAAG 59.366 45.833 7.86 0.00 0.00 2.85
47 48 4.287067 AGGCAAGATCTTAGTTGTGGAGAA 59.713 41.667 7.86 0.00 0.00 2.87
48 49 3.840666 AGGCAAGATCTTAGTTGTGGAGA 59.159 43.478 7.86 0.00 0.00 3.71
49 50 4.081198 AGAGGCAAGATCTTAGTTGTGGAG 60.081 45.833 7.86 0.00 0.00 3.86
50 51 3.840666 AGAGGCAAGATCTTAGTTGTGGA 59.159 43.478 7.86 0.00 0.00 4.02
51 52 4.187694 GAGAGGCAAGATCTTAGTTGTGG 58.812 47.826 7.86 0.00 0.00 4.17
52 53 4.187694 GGAGAGGCAAGATCTTAGTTGTG 58.812 47.826 7.86 0.00 0.00 3.33
53 54 3.840666 TGGAGAGGCAAGATCTTAGTTGT 59.159 43.478 7.86 0.00 0.00 3.32
54 55 4.478206 TGGAGAGGCAAGATCTTAGTTG 57.522 45.455 7.86 0.00 0.00 3.16
55 56 5.071115 GGTATGGAGAGGCAAGATCTTAGTT 59.929 44.000 7.86 0.00 0.00 2.24
56 57 4.591072 GGTATGGAGAGGCAAGATCTTAGT 59.409 45.833 7.86 0.00 0.00 2.24
57 58 4.837860 AGGTATGGAGAGGCAAGATCTTAG 59.162 45.833 7.86 4.20 0.00 2.18
58 59 4.820775 AGGTATGGAGAGGCAAGATCTTA 58.179 43.478 7.86 0.00 0.00 2.10
59 60 3.663198 AGGTATGGAGAGGCAAGATCTT 58.337 45.455 0.88 0.88 0.00 2.40
60 61 3.342926 AGGTATGGAGAGGCAAGATCT 57.657 47.619 0.00 0.00 0.00 2.75
61 62 3.259625 GGTAGGTATGGAGAGGCAAGATC 59.740 52.174 0.00 0.00 0.00 2.75
62 63 3.243724 GGTAGGTATGGAGAGGCAAGAT 58.756 50.000 0.00 0.00 0.00 2.40
63 64 2.679082 GGTAGGTATGGAGAGGCAAGA 58.321 52.381 0.00 0.00 0.00 3.02
64 65 1.694696 GGGTAGGTATGGAGAGGCAAG 59.305 57.143 0.00 0.00 0.00 4.01
65 66 1.694693 GGGGTAGGTATGGAGAGGCAA 60.695 57.143 0.00 0.00 0.00 4.52
66 67 0.105142 GGGGTAGGTATGGAGAGGCA 60.105 60.000 0.00 0.00 0.00 4.75
67 68 0.836830 GGGGGTAGGTATGGAGAGGC 60.837 65.000 0.00 0.00 0.00 4.70
68 69 0.868186 AGGGGGTAGGTATGGAGAGG 59.132 60.000 0.00 0.00 0.00 3.69
69 70 2.449730 TGTAGGGGGTAGGTATGGAGAG 59.550 54.545 0.00 0.00 0.00 3.20
70 71 2.516887 TGTAGGGGGTAGGTATGGAGA 58.483 52.381 0.00 0.00 0.00 3.71
71 72 3.562108 ATGTAGGGGGTAGGTATGGAG 57.438 52.381 0.00 0.00 0.00 3.86
72 73 4.424646 AGTAATGTAGGGGGTAGGTATGGA 59.575 45.833 0.00 0.00 0.00 3.41
73 74 4.530946 CAGTAATGTAGGGGGTAGGTATGG 59.469 50.000 0.00 0.00 0.00 2.74
74 75 5.152934 ACAGTAATGTAGGGGGTAGGTATG 58.847 45.833 0.00 0.00 0.00 2.39
75 76 5.102956 TGACAGTAATGTAGGGGGTAGGTAT 60.103 44.000 0.00 0.00 0.00 2.73
76 77 4.232587 TGACAGTAATGTAGGGGGTAGGTA 59.767 45.833 0.00 0.00 0.00 3.08
77 78 3.013188 TGACAGTAATGTAGGGGGTAGGT 59.987 47.826 0.00 0.00 0.00 3.08
78 79 3.641906 CTGACAGTAATGTAGGGGGTAGG 59.358 52.174 0.00 0.00 0.00 3.18
79 80 4.341520 GTCTGACAGTAATGTAGGGGGTAG 59.658 50.000 2.24 0.00 0.00 3.18
80 81 4.016851 AGTCTGACAGTAATGTAGGGGGTA 60.017 45.833 10.88 0.00 0.00 3.69
81 82 3.105283 GTCTGACAGTAATGTAGGGGGT 58.895 50.000 2.24 0.00 0.00 4.95
82 83 3.375699 AGTCTGACAGTAATGTAGGGGG 58.624 50.000 10.88 0.00 0.00 5.40
83 84 5.892119 TCTAAGTCTGACAGTAATGTAGGGG 59.108 44.000 10.88 0.00 0.00 4.79
84 85 7.259161 GTTCTAAGTCTGACAGTAATGTAGGG 58.741 42.308 10.88 0.00 0.00 3.53
85 86 7.093902 TGGTTCTAAGTCTGACAGTAATGTAGG 60.094 40.741 10.88 0.00 0.00 3.18
86 87 7.755822 GTGGTTCTAAGTCTGACAGTAATGTAG 59.244 40.741 10.88 0.00 0.00 2.74
87 88 7.574404 CGTGGTTCTAAGTCTGACAGTAATGTA 60.574 40.741 10.88 0.00 0.00 2.29
88 89 6.456501 GTGGTTCTAAGTCTGACAGTAATGT 58.543 40.000 10.88 0.00 0.00 2.71
89 90 5.573282 CGTGGTTCTAAGTCTGACAGTAATG 59.427 44.000 10.88 0.00 0.00 1.90
90 91 5.475909 TCGTGGTTCTAAGTCTGACAGTAAT 59.524 40.000 10.88 0.00 0.00 1.89
91 92 4.823442 TCGTGGTTCTAAGTCTGACAGTAA 59.177 41.667 10.88 0.00 0.00 2.24
92 93 4.214971 GTCGTGGTTCTAAGTCTGACAGTA 59.785 45.833 10.88 1.08 0.00 2.74
93 94 3.004524 GTCGTGGTTCTAAGTCTGACAGT 59.995 47.826 10.88 0.00 0.00 3.55
94 95 3.004419 TGTCGTGGTTCTAAGTCTGACAG 59.996 47.826 10.88 0.00 31.99 3.51
95 96 2.953648 TGTCGTGGTTCTAAGTCTGACA 59.046 45.455 10.88 0.00 33.14 3.58
96 97 3.004524 ACTGTCGTGGTTCTAAGTCTGAC 59.995 47.826 0.00 0.00 0.00 3.51
97 98 3.004419 CACTGTCGTGGTTCTAAGTCTGA 59.996 47.826 0.00 0.00 37.50 3.27
98 99 3.309388 CACTGTCGTGGTTCTAAGTCTG 58.691 50.000 0.00 0.00 37.50 3.51
99 100 2.288273 GCACTGTCGTGGTTCTAAGTCT 60.288 50.000 0.00 0.00 41.51 3.24
100 101 2.059541 GCACTGTCGTGGTTCTAAGTC 58.940 52.381 0.00 0.00 41.51 3.01
101 102 1.411246 TGCACTGTCGTGGTTCTAAGT 59.589 47.619 0.00 0.00 41.51 2.24
102 103 1.792949 GTGCACTGTCGTGGTTCTAAG 59.207 52.381 10.32 0.00 41.51 2.18
103 104 1.137282 TGTGCACTGTCGTGGTTCTAA 59.863 47.619 19.41 0.00 41.51 2.10
104 105 0.747852 TGTGCACTGTCGTGGTTCTA 59.252 50.000 19.41 0.00 41.51 2.10
105 106 0.810031 GTGTGCACTGTCGTGGTTCT 60.810 55.000 19.41 0.00 41.51 3.01
106 107 1.087202 TGTGTGCACTGTCGTGGTTC 61.087 55.000 19.41 0.00 41.51 3.62
107 108 0.463654 ATGTGTGCACTGTCGTGGTT 60.464 50.000 19.41 0.00 41.51 3.67
108 109 0.463654 AATGTGTGCACTGTCGTGGT 60.464 50.000 19.41 0.00 41.51 4.16
109 110 0.662619 AAATGTGTGCACTGTCGTGG 59.337 50.000 19.41 0.00 41.51 4.94
110 111 2.473530 AAAATGTGTGCACTGTCGTG 57.526 45.000 19.41 0.00 44.07 4.35
127 128 6.112058 AGCAAGCTTTTCCAACACATAAAAA 58.888 32.000 0.00 0.00 0.00 1.94
128 129 5.669477 AGCAAGCTTTTCCAACACATAAAA 58.331 33.333 0.00 0.00 0.00 1.52
129 130 5.275067 AGCAAGCTTTTCCAACACATAAA 57.725 34.783 0.00 0.00 0.00 1.40
130 131 4.261994 GGAGCAAGCTTTTCCAACACATAA 60.262 41.667 17.89 0.00 0.00 1.90
131 132 3.255642 GGAGCAAGCTTTTCCAACACATA 59.744 43.478 17.89 0.00 0.00 2.29
132 133 2.036346 GGAGCAAGCTTTTCCAACACAT 59.964 45.455 17.89 0.00 0.00 3.21
133 134 1.408702 GGAGCAAGCTTTTCCAACACA 59.591 47.619 17.89 0.00 0.00 3.72
134 135 1.408702 TGGAGCAAGCTTTTCCAACAC 59.591 47.619 21.56 1.92 38.03 3.32
135 136 1.774110 TGGAGCAAGCTTTTCCAACA 58.226 45.000 21.56 4.54 38.03 3.33
136 137 3.391506 AATGGAGCAAGCTTTTCCAAC 57.608 42.857 25.48 4.99 43.69 3.77
137 138 4.101430 AGAAAATGGAGCAAGCTTTTCCAA 59.899 37.500 25.48 13.95 43.69 3.53
138 139 3.642848 AGAAAATGGAGCAAGCTTTTCCA 59.357 39.130 24.46 24.46 44.52 3.53
139 140 4.263018 AGAAAATGGAGCAAGCTTTTCC 57.737 40.909 16.53 16.53 38.00 3.13
140 141 6.870439 ACATAAGAAAATGGAGCAAGCTTTTC 59.130 34.615 0.00 8.25 37.69 2.29
141 142 6.762333 ACATAAGAAAATGGAGCAAGCTTTT 58.238 32.000 0.00 0.00 0.00 2.27
142 143 6.350629 ACATAAGAAAATGGAGCAAGCTTT 57.649 33.333 0.00 0.00 0.00 3.51
143 144 5.990120 ACATAAGAAAATGGAGCAAGCTT 57.010 34.783 0.00 0.00 0.00 3.74
144 145 5.990120 AACATAAGAAAATGGAGCAAGCT 57.010 34.783 0.00 0.00 0.00 3.74
145 146 7.538575 TCTAAACATAAGAAAATGGAGCAAGC 58.461 34.615 0.00 0.00 0.00 4.01
146 147 9.912634 TTTCTAAACATAAGAAAATGGAGCAAG 57.087 29.630 0.00 0.00 39.40 4.01
192 193 9.921637 GTGGTTTATTTGTTTGGATTTAGATGA 57.078 29.630 0.00 0.00 0.00 2.92
193 194 8.859156 CGTGGTTTATTTGTTTGGATTTAGATG 58.141 33.333 0.00 0.00 0.00 2.90
194 195 8.798402 TCGTGGTTTATTTGTTTGGATTTAGAT 58.202 29.630 0.00 0.00 0.00 1.98
195 196 8.167605 TCGTGGTTTATTTGTTTGGATTTAGA 57.832 30.769 0.00 0.00 0.00 2.10
196 197 8.804688 TTCGTGGTTTATTTGTTTGGATTTAG 57.195 30.769 0.00 0.00 0.00 1.85
197 198 9.765795 AATTCGTGGTTTATTTGTTTGGATTTA 57.234 25.926 0.00 0.00 0.00 1.40
198 199 8.555361 CAATTCGTGGTTTATTTGTTTGGATTT 58.445 29.630 0.00 0.00 0.00 2.17
199 200 7.713073 ACAATTCGTGGTTTATTTGTTTGGATT 59.287 29.630 0.00 0.00 0.00 3.01
200 201 7.213678 ACAATTCGTGGTTTATTTGTTTGGAT 58.786 30.769 0.00 0.00 0.00 3.41
201 202 6.574350 ACAATTCGTGGTTTATTTGTTTGGA 58.426 32.000 0.00 0.00 0.00 3.53
202 203 6.836577 ACAATTCGTGGTTTATTTGTTTGG 57.163 33.333 0.00 0.00 0.00 3.28
203 204 8.270111 GGTAACAATTCGTGGTTTATTTGTTTG 58.730 33.333 4.43 0.00 0.00 2.93
204 205 7.438757 GGGTAACAATTCGTGGTTTATTTGTTT 59.561 33.333 4.43 0.00 39.74 2.83
205 206 6.924612 GGGTAACAATTCGTGGTTTATTTGTT 59.075 34.615 0.00 0.00 39.74 2.83
206 207 6.265876 AGGGTAACAATTCGTGGTTTATTTGT 59.734 34.615 0.00 0.00 39.74 2.83
207 208 6.683715 AGGGTAACAATTCGTGGTTTATTTG 58.316 36.000 0.00 0.00 39.74 2.32
222 223 1.001181 CGGGAGTCGAAAGGGTAACAA 59.999 52.381 0.00 0.00 42.43 2.83
231 232 1.670811 GTACGATACCGGGAGTCGAAA 59.329 52.381 25.34 13.70 42.43 3.46
232 233 1.299541 GTACGATACCGGGAGTCGAA 58.700 55.000 25.34 0.00 42.43 3.71
236 237 2.157738 GCTATGTACGATACCGGGAGT 58.842 52.381 6.32 2.19 40.78 3.85
237 238 2.434428 AGCTATGTACGATACCGGGAG 58.566 52.381 6.32 0.00 40.78 4.30
238 239 2.574006 AGCTATGTACGATACCGGGA 57.426 50.000 6.32 0.00 40.78 5.14
239 240 2.818432 AGAAGCTATGTACGATACCGGG 59.182 50.000 6.32 0.00 40.78 5.73
240 241 3.501062 TGAGAAGCTATGTACGATACCGG 59.499 47.826 0.00 0.00 40.78 5.28
241 242 4.713806 CTGAGAAGCTATGTACGATACCG 58.286 47.826 0.00 0.00 42.50 4.02
242 243 4.477780 GCTGAGAAGCTATGTACGATACC 58.522 47.826 0.00 0.00 0.00 2.73
245 246 2.030717 CGGCTGAGAAGCTATGTACGAT 60.031 50.000 0.00 0.00 34.73 3.73
250 251 1.550524 TGTTCGGCTGAGAAGCTATGT 59.449 47.619 0.00 0.00 34.73 2.29
257 258 0.472471 ACCCTTTGTTCGGCTGAGAA 59.528 50.000 0.00 0.00 0.00 2.87
261 262 2.159170 TGAAAAACCCTTTGTTCGGCTG 60.159 45.455 0.00 0.00 35.67 4.85
264 265 2.456010 CGTGAAAAACCCTTTGTTCGG 58.544 47.619 0.00 0.00 35.67 4.30
266 267 2.159156 AGGCGTGAAAAACCCTTTGTTC 60.159 45.455 0.00 0.00 35.67 3.18
270 271 0.104120 GCAGGCGTGAAAAACCCTTT 59.896 50.000 11.29 0.00 29.73 3.11
272 273 0.109723 TAGCAGGCGTGAAAAACCCT 59.890 50.000 11.29 0.00 31.66 4.34
279 280 2.260434 GTCGGTAGCAGGCGTGAA 59.740 61.111 11.29 0.00 0.00 3.18
280 281 4.111016 CGTCGGTAGCAGGCGTGA 62.111 66.667 11.29 0.00 0.00 4.35
316 317 1.847088 GGCCCTAAGACCTTGGAAGAT 59.153 52.381 0.00 0.00 0.00 2.40
324 325 1.216990 CCTTCATGGCCCTAAGACCT 58.783 55.000 0.00 0.00 0.00 3.85
340 341 0.739561 GTCGAGATCCACTACGCCTT 59.260 55.000 0.00 0.00 0.00 4.35
346 347 3.056107 CCAACCTTTGTCGAGATCCACTA 60.056 47.826 0.00 0.00 0.00 2.74
351 352 1.734465 CTGCCAACCTTTGTCGAGATC 59.266 52.381 0.00 0.00 0.00 2.75
355 356 1.593196 CTTCTGCCAACCTTTGTCGA 58.407 50.000 0.00 0.00 0.00 4.20
356 357 0.593128 CCTTCTGCCAACCTTTGTCG 59.407 55.000 0.00 0.00 0.00 4.35
372 373 1.359168 AAAACGGAGTAGGAGCCCTT 58.641 50.000 0.00 0.00 45.00 3.95
414 416 7.254658 CGTCTTTCTAAGCAGAAACAAACCTTA 60.255 37.037 0.00 0.00 44.13 2.69
416 418 5.007724 CGTCTTTCTAAGCAGAAACAAACCT 59.992 40.000 0.00 0.00 44.13 3.50
419 421 5.277345 GCTCGTCTTTCTAAGCAGAAACAAA 60.277 40.000 0.00 0.00 44.13 2.83
425 427 2.094494 CAGGCTCGTCTTTCTAAGCAGA 60.094 50.000 0.00 0.00 36.47 4.26
434 436 1.674057 CCTCCACAGGCTCGTCTTT 59.326 57.895 0.00 0.00 30.98 2.52
443 445 1.908340 CTTCAGGGAGCCTCCACAGG 61.908 65.000 13.90 0.00 43.82 4.00
445 447 0.252881 ATCTTCAGGGAGCCTCCACA 60.253 55.000 13.90 0.00 38.64 4.17
449 451 3.574354 ATTTCATCTTCAGGGAGCCTC 57.426 47.619 0.00 0.00 0.00 4.70
473 475 2.452937 GGGGCTAGGCGGGAAGAAT 61.453 63.158 10.58 0.00 0.00 2.40
491 493 5.881447 ACGCTAGACACACTGTAAGAATAG 58.119 41.667 0.00 0.00 37.43 1.73
497 499 1.875514 ACGACGCTAGACACACTGTAA 59.124 47.619 0.00 0.00 0.00 2.41
499 501 0.237761 GACGACGCTAGACACACTGT 59.762 55.000 0.00 0.00 0.00 3.55
501 503 0.947660 TCGACGACGCTAGACACACT 60.948 55.000 1.48 0.00 39.58 3.55
515 517 1.800315 CTACACACGCCCTTCGACG 60.800 63.158 0.00 0.00 41.67 5.12
542 544 4.094887 CCAAATAATGTGAAGGTCTGTCGG 59.905 45.833 0.00 0.00 0.00 4.79
545 547 4.695455 CGACCAAATAATGTGAAGGTCTGT 59.305 41.667 0.00 0.00 42.49 3.41
559 561 4.004314 CCACATACAACACCGACCAAATA 58.996 43.478 0.00 0.00 0.00 1.40
576 578 2.759114 CCAGCTGGTCCACCACAT 59.241 61.111 25.53 0.00 42.01 3.21
592 594 6.322201 ACACATATGAACAAAGATTGGATCCC 59.678 38.462 10.38 0.00 34.12 3.85
610 612 9.679661 TCCAATCTGTAACACATAAACACATAT 57.320 29.630 0.00 0.00 0.00 1.78
638 649 6.567687 TGAAAATGAGCGTGGATTAGAAAA 57.432 33.333 0.00 0.00 0.00 2.29
639 650 6.374053 TGATGAAAATGAGCGTGGATTAGAAA 59.626 34.615 0.00 0.00 0.00 2.52
648 659 3.601356 GTCGATGATGAAAATGAGCGTG 58.399 45.455 0.00 0.00 0.00 5.34
770 781 3.242608 ACGAACACAACATTGAACCGAAG 60.243 43.478 0.00 0.00 0.00 3.79
771 782 2.678836 ACGAACACAACATTGAACCGAA 59.321 40.909 0.00 0.00 0.00 4.30
772 783 2.281517 ACGAACACAACATTGAACCGA 58.718 42.857 0.00 0.00 0.00 4.69
773 784 2.748461 ACGAACACAACATTGAACCG 57.252 45.000 0.00 0.00 0.00 4.44
774 785 4.607557 CGACTACGAACACAACATTGAACC 60.608 45.833 0.00 0.00 42.66 3.62
775 786 4.026310 ACGACTACGAACACAACATTGAAC 60.026 41.667 0.00 0.00 42.66 3.18
776 787 4.114073 ACGACTACGAACACAACATTGAA 58.886 39.130 0.00 0.00 42.66 2.69
777 788 3.708890 ACGACTACGAACACAACATTGA 58.291 40.909 0.00 0.00 42.66 2.57
778 789 3.420035 CGACGACTACGAACACAACATTG 60.420 47.826 0.00 0.00 42.66 2.82
780 791 2.313234 CGACGACTACGAACACAACAT 58.687 47.619 0.00 0.00 42.66 2.71
782 793 0.428618 GCGACGACTACGAACACAAC 59.571 55.000 0.00 0.00 42.66 3.32
783 794 0.308684 AGCGACGACTACGAACACAA 59.691 50.000 0.00 0.00 42.66 3.33
784 795 1.147473 TAGCGACGACTACGAACACA 58.853 50.000 0.00 0.00 42.66 3.72
785 796 2.164427 CTTAGCGACGACTACGAACAC 58.836 52.381 0.00 0.00 42.66 3.32
786 797 1.800586 ACTTAGCGACGACTACGAACA 59.199 47.619 0.00 0.00 42.66 3.18
787 798 2.164427 CACTTAGCGACGACTACGAAC 58.836 52.381 0.00 0.00 42.66 3.95
788 799 1.129251 CCACTTAGCGACGACTACGAA 59.871 52.381 0.00 0.00 42.66 3.85
789 800 0.723414 CCACTTAGCGACGACTACGA 59.277 55.000 0.00 0.00 42.66 3.43
790 801 0.445436 ACCACTTAGCGACGACTACG 59.555 55.000 0.00 0.28 45.75 3.51
796 807 0.723414 TCGTAGACCACTTAGCGACG 59.277 55.000 0.00 0.00 0.00 5.12
798 809 2.005451 GACTCGTAGACCACTTAGCGA 58.995 52.381 0.00 0.00 0.00 4.93
807 818 6.237861 GCAAATTACATTCAGACTCGTAGACC 60.238 42.308 0.00 0.00 0.00 3.85
814 825 8.895932 AAATAACGCAAATTACATTCAGACTC 57.104 30.769 0.00 0.00 0.00 3.36
842 853 1.210870 GTCAGTACGAAACAACGCCA 58.789 50.000 0.00 0.00 36.70 5.69
854 865 5.108217 CGATCTATGCATCAAACGTCAGTAC 60.108 44.000 0.19 0.00 0.00 2.73
859 870 5.389642 TTTCGATCTATGCATCAAACGTC 57.610 39.130 0.19 0.00 0.00 4.34
860 871 5.794687 TTTTCGATCTATGCATCAAACGT 57.205 34.783 0.19 0.00 0.00 3.99
861 872 5.848036 GGATTTTCGATCTATGCATCAAACG 59.152 40.000 0.19 6.20 0.00 3.60
862 873 6.728200 TGGATTTTCGATCTATGCATCAAAC 58.272 36.000 0.19 0.00 0.00 2.93
869 880 7.992180 ATTTGTTTGGATTTTCGATCTATGC 57.008 32.000 0.00 0.00 0.00 3.14
871 882 9.736023 GCTTATTTGTTTGGATTTTCGATCTAT 57.264 29.630 0.00 0.00 0.00 1.98
874 885 7.220875 GGAGCTTATTTGTTTGGATTTTCGATC 59.779 37.037 0.00 0.00 0.00 3.69
876 887 6.208599 AGGAGCTTATTTGTTTGGATTTTCGA 59.791 34.615 0.00 0.00 0.00 3.71
877 888 6.389906 AGGAGCTTATTTGTTTGGATTTTCG 58.610 36.000 0.00 0.00 0.00 3.46
878 889 6.528072 CGAGGAGCTTATTTGTTTGGATTTTC 59.472 38.462 0.00 0.00 0.00 2.29
936 960 0.256177 GGAGGGCAGAAAGGGTTAGG 59.744 60.000 0.00 0.00 0.00 2.69
1076 1100 2.432628 CGTCGAACACCCTCCTGC 60.433 66.667 0.00 0.00 0.00 4.85
1078 1102 2.915659 TGCGTCGAACACCCTCCT 60.916 61.111 0.00 0.00 0.00 3.69
1100 1124 2.048877 GAAGTTCGCCGTCCCGAA 60.049 61.111 0.00 0.00 44.09 4.30
1101 1125 4.409218 CGAAGTTCGCCGTCCCGA 62.409 66.667 13.08 0.00 31.14 5.14
1322 1346 1.339610 TCAAATGTTCAAACTGGGGCG 59.660 47.619 0.00 0.00 0.00 6.13
1750 1901 5.346181 AGAACTACAAATGGAGCCTAGTC 57.654 43.478 0.00 0.00 0.00 2.59
1771 1922 5.827568 AATTTGATGTTTAAGCGTGCAAG 57.172 34.783 0.00 0.00 0.00 4.01
1800 1952 3.019564 GGAACACATTTCCCTCTCCATG 58.980 50.000 0.00 0.00 32.48 3.66
1813 1965 6.349280 CGAACAAAATATCCACTGGAACACAT 60.349 38.462 0.66 0.00 34.34 3.21
1995 2147 8.417106 TCTGTTTCTCTACATCATCTCCAATAC 58.583 37.037 0.00 0.00 0.00 1.89
2339 2494 4.392047 TGGCATTTGAGCAGATAGTATGG 58.608 43.478 0.00 0.00 35.83 2.74
2346 2501 2.463752 ACCAATGGCATTTGAGCAGAT 58.536 42.857 17.24 0.00 35.83 2.90
2347 2502 1.927487 ACCAATGGCATTTGAGCAGA 58.073 45.000 17.24 0.00 35.83 4.26
2385 2540 3.884037 ACAGAGGGAACACAAAGGAAT 57.116 42.857 0.00 0.00 0.00 3.01
2781 2939 7.228308 GCAGCATCTAAAGTATCCTTGATCTTT 59.772 37.037 0.00 0.00 34.98 2.52
3017 3175 3.244215 ACATAATGGACATGTAGAGGGCG 60.244 47.826 0.00 0.00 34.88 6.13
3148 3306 1.743394 GTAGCAGGCAACCCATGTAAC 59.257 52.381 0.00 0.00 37.17 2.50
3204 3362 3.686016 GAAGTCCCTGCCACATTTAAGA 58.314 45.455 0.00 0.00 0.00 2.10
3301 3459 8.494433 TCTTGCCTTGACTATAATTCTATGGTT 58.506 33.333 0.00 0.00 29.94 3.67
3666 3880 9.445786 GAAATCGATTAGTCACTTCTAGAAGAG 57.554 37.037 33.94 27.00 40.79 2.85
3685 3899 5.687770 TCAGCAATTCAGTTTGAAATCGA 57.312 34.783 0.00 0.00 40.12 3.59
3851 4065 1.484227 TTCACCACTTCGTTGACGCG 61.484 55.000 3.53 3.53 39.60 6.01
4095 4311 8.366359 AGTTATTGGCAACTGAATTTTCCTAT 57.634 30.769 0.00 0.00 37.37 2.57
5072 5373 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
5112 5413 2.565834 TCTTTAGTACGCAGCCTTTCCT 59.434 45.455 0.00 0.00 0.00 3.36
5149 5450 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
5352 5653 5.170748 CAAGCAAGTGTTTGTCCTCTTTTT 58.829 37.500 0.17 0.00 36.65 1.94
5610 5952 2.744202 CACAGTCCGAAAGAAGATTGGG 59.256 50.000 0.00 0.00 0.00 4.12
5796 6138 8.100508 AGCCATTAACTAGAAAAAGAAGTGAC 57.899 34.615 0.00 0.00 0.00 3.67
5810 6152 9.609346 GTGGTAGAGAAATAAAGCCATTAACTA 57.391 33.333 0.00 0.00 0.00 2.24
5926 6280 5.428496 ACAGCAATACATGATATGTGTGC 57.572 39.130 17.52 17.52 46.92 4.57
6112 6466 4.225860 TCCGTGGGACAATCCAGT 57.774 55.556 0.00 0.00 44.16 4.00
6196 6550 9.944376 AGACAGCACTGTATCTTAAATTCTTAA 57.056 29.630 2.68 0.00 45.05 1.85
6197 6551 9.371136 CAGACAGCACTGTATCTTAAATTCTTA 57.629 33.333 2.68 0.00 45.05 2.10
6198 6552 8.261492 CAGACAGCACTGTATCTTAAATTCTT 57.739 34.615 2.68 0.00 45.05 2.52
6199 6553 7.840342 CAGACAGCACTGTATCTTAAATTCT 57.160 36.000 2.68 0.00 45.05 2.40
6569 6923 1.277273 CTCAGGTGGATGAAGCACTCA 59.723 52.381 0.00 0.00 38.81 3.41
6763 7117 6.552859 TGCTTAATTGAGAATGTCGTTTCA 57.447 33.333 0.58 0.00 0.00 2.69
6836 7191 4.701651 CCAATCCACAGTTAGAAATGCAGA 59.298 41.667 0.00 0.00 0.00 4.26
6871 7226 7.519008 GCTGGACCAATCAAAATAAGATAGACG 60.519 40.741 0.00 0.00 0.00 4.18
6880 7235 3.278574 CCTCGCTGGACCAATCAAAATA 58.721 45.455 0.00 0.00 38.35 1.40
6888 7243 1.568504 AGATAACCTCGCTGGACCAA 58.431 50.000 0.00 0.00 39.71 3.67
6921 7276 0.035317 ATCCAACTTGCAGCTGACGA 59.965 50.000 20.43 7.90 0.00 4.20
6975 7330 1.453155 AATTGCCTCGTCGCTTGATT 58.547 45.000 0.00 0.00 0.00 2.57
7010 7365 3.920093 GACAAGCCCAAGTCCCCCG 62.920 68.421 0.00 0.00 0.00 5.73
7019 7374 0.037326 GACGTCTGATGACAAGCCCA 60.037 55.000 8.70 0.00 43.06 5.36
7035 7390 2.799371 GTGCCGGGAGAGTAGACG 59.201 66.667 2.18 0.00 0.00 4.18
7068 7423 5.977129 CCGATTTTTGTCCATATAAAGCACC 59.023 40.000 0.00 0.00 0.00 5.01
7079 7434 1.519751 CCGGTGCCGATTTTTGTCCA 61.520 55.000 12.71 0.00 42.83 4.02
7106 7470 1.915266 CCACCACTGAGAGAGCCCA 60.915 63.158 0.00 0.00 0.00 5.36
7112 7476 3.623906 ACATTCATCCACCACTGAGAG 57.376 47.619 0.00 0.00 0.00 3.20
7142 7506 3.003173 AACTGCCCTGGCGCTCTA 61.003 61.111 7.64 0.00 45.51 2.43
7147 7511 1.750399 AATAGCAACTGCCCTGGCG 60.750 57.895 3.32 1.24 45.51 5.69
7159 7523 2.263895 ACAGTCCCCTACCAATAGCA 57.736 50.000 0.00 0.00 0.00 3.49
7165 7529 1.209621 GCCAATACAGTCCCCTACCA 58.790 55.000 0.00 0.00 0.00 3.25
7168 7532 0.837272 GCAGCCAATACAGTCCCCTA 59.163 55.000 0.00 0.00 0.00 3.53
7189 7553 3.452264 TCCTCCAACGATCAATCATCAGT 59.548 43.478 0.00 0.00 0.00 3.41
7190 7554 4.056740 CTCCTCCAACGATCAATCATCAG 58.943 47.826 0.00 0.00 0.00 2.90
7203 7567 2.611224 CCATTTGCTTTGCTCCTCCAAC 60.611 50.000 0.00 0.00 0.00 3.77
7268 7632 4.093408 ACAACGATATTGTGATGCTGACAC 59.907 41.667 0.00 0.00 38.55 3.67
7269 7633 4.252878 ACAACGATATTGTGATGCTGACA 58.747 39.130 0.00 0.00 0.00 3.58
7270 7634 4.864916 ACAACGATATTGTGATGCTGAC 57.135 40.909 0.00 0.00 0.00 3.51
7271 7635 5.901552 TCTACAACGATATTGTGATGCTGA 58.098 37.500 0.00 0.00 34.11 4.26
7272 7636 6.588348 TTCTACAACGATATTGTGATGCTG 57.412 37.500 0.00 0.00 34.11 4.41
7326 7690 2.037772 CTCTATGACTAAGGCCCGCAAT 59.962 50.000 0.00 0.00 0.00 3.56
7330 7697 4.561105 GATTTCTCTATGACTAAGGCCCG 58.439 47.826 0.00 0.00 0.00 6.13
7344 7711 4.642466 AAAAGGAAGTCCGGATTTCTCT 57.358 40.909 31.30 24.51 42.08 3.10
7384 7751 2.030096 GTCCGGATTTTACCCGCAAAAA 60.030 45.455 7.81 0.00 45.24 1.94
7385 7752 1.540707 GTCCGGATTTTACCCGCAAAA 59.459 47.619 7.81 0.00 45.24 2.44
7386 7753 1.166989 GTCCGGATTTTACCCGCAAA 58.833 50.000 7.81 0.00 45.24 3.68
7387 7754 0.325602 AGTCCGGATTTTACCCGCAA 59.674 50.000 7.81 0.00 45.24 4.85
7388 7755 0.325602 AAGTCCGGATTTTACCCGCA 59.674 50.000 7.81 0.00 45.24 5.69
7389 7756 1.012086 GAAGTCCGGATTTTACCCGC 58.988 55.000 14.03 0.00 45.24 6.13
7390 7757 1.660167 GGAAGTCCGGATTTTACCCG 58.340 55.000 14.03 0.00 46.10 5.28
7402 7769 3.007635 CCAAACATAACTCCGGAAGTCC 58.992 50.000 5.23 0.00 37.17 3.85
7403 7770 2.418976 GCCAAACATAACTCCGGAAGTC 59.581 50.000 5.23 0.00 37.17 3.01
7404 7771 2.224670 TGCCAAACATAACTCCGGAAGT 60.225 45.455 5.23 2.83 41.10 3.01
7405 7772 2.420022 CTGCCAAACATAACTCCGGAAG 59.580 50.000 5.23 2.09 0.00 3.46
7406 7773 2.039216 TCTGCCAAACATAACTCCGGAA 59.961 45.455 5.23 0.00 0.00 4.30
7443 7810 1.616159 ACCCTCCACAAAAATCCACG 58.384 50.000 0.00 0.00 0.00 4.94
7449 7816 2.107552 CTCCCTGTACCCTCCACAAAAA 59.892 50.000 0.00 0.00 0.00 1.94
7463 7853 0.763652 CCAGCTCATATGCTCCCTGT 59.236 55.000 0.00 0.00 41.98 4.00
7525 7932 4.201523 GCAGCACGAATCAAATTAGCAAAC 60.202 41.667 0.00 0.00 0.00 2.93
7551 7958 3.119101 TCACAAAACCGCCTTAAAAAGCA 60.119 39.130 0.00 0.00 0.00 3.91
7561 7968 5.705902 ACACTTTATAATCACAAAACCGCC 58.294 37.500 0.00 0.00 0.00 6.13
7578 7985 9.896645 ACTGTATTTGATCATCTGATACACTTT 57.103 29.630 13.36 4.16 34.37 2.66
7601 8008 3.300388 TCCTCTATGGCCAGAGTTACTG 58.700 50.000 26.07 11.61 40.47 2.74
7625 9653 1.754234 GCTTCCGTCATTGGCCCAT 60.754 57.895 0.00 0.00 0.00 4.00
7786 9815 2.037121 GCTACAAAGCCACCAAATTGGT 59.963 45.455 12.63 12.63 45.60 3.67
7787 9816 2.687370 GCTACAAAGCCACCAAATTGG 58.313 47.619 11.02 11.02 43.40 3.16
7803 9832 1.810151 TGGCAGACAAAAATCGGCTAC 59.190 47.619 0.00 0.00 39.45 3.58
7834 9863 2.479566 AGTGACCGATGAAATGCACT 57.520 45.000 0.00 0.00 0.00 4.40
7835 9864 4.403453 GTTTAGTGACCGATGAAATGCAC 58.597 43.478 0.00 0.00 0.00 4.57
7836 9865 3.124466 CGTTTAGTGACCGATGAAATGCA 59.876 43.478 0.00 0.00 0.00 3.96
7837 9866 3.369756 TCGTTTAGTGACCGATGAAATGC 59.630 43.478 0.00 0.00 0.00 3.56
7838 9867 4.625742 ACTCGTTTAGTGACCGATGAAATG 59.374 41.667 0.00 0.00 36.93 2.32
7839 9868 4.817517 ACTCGTTTAGTGACCGATGAAAT 58.182 39.130 0.00 0.00 36.93 2.17
7851 9880 4.002906 TCCTTGCATGAACTCGTTTAGT 57.997 40.909 0.00 0.00 41.49 2.24
7852 9881 4.712763 GTTCCTTGCATGAACTCGTTTAG 58.287 43.478 17.75 0.00 39.18 1.85
7853 9882 4.742438 GTTCCTTGCATGAACTCGTTTA 57.258 40.909 17.75 0.00 39.18 2.01
7860 9889 3.569701 TCCTGAAAGTTCCTTGCATGAAC 59.430 43.478 17.47 17.47 41.89 3.18
7861 9890 3.822735 CTCCTGAAAGTTCCTTGCATGAA 59.177 43.478 0.00 0.00 27.50 2.57
7862 9891 3.181440 ACTCCTGAAAGTTCCTTGCATGA 60.181 43.478 0.00 0.00 27.50 3.07
7864 9893 3.152341 CACTCCTGAAAGTTCCTTGCAT 58.848 45.455 0.00 0.00 27.50 3.96
7866 9895 1.268079 GCACTCCTGAAAGTTCCTTGC 59.732 52.381 0.00 0.00 0.00 4.01
7868 9897 3.297134 TTGCACTCCTGAAAGTTCCTT 57.703 42.857 0.00 0.00 0.00 3.36
7870 9899 2.887152 ACATTGCACTCCTGAAAGTTCC 59.113 45.455 0.00 0.00 0.00 3.62
7871 9900 4.574599 AACATTGCACTCCTGAAAGTTC 57.425 40.909 0.00 0.00 0.00 3.01
7872 9901 4.160252 ACAAACATTGCACTCCTGAAAGTT 59.840 37.500 0.00 0.00 0.00 2.66
7874 9903 4.293415 GACAAACATTGCACTCCTGAAAG 58.707 43.478 0.00 0.00 0.00 2.62
7875 9904 3.243035 CGACAAACATTGCACTCCTGAAA 60.243 43.478 0.00 0.00 0.00 2.69
7876 9905 2.290367 CGACAAACATTGCACTCCTGAA 59.710 45.455 0.00 0.00 0.00 3.02
7877 9906 1.872952 CGACAAACATTGCACTCCTGA 59.127 47.619 0.00 0.00 0.00 3.86
7878 9907 1.872952 TCGACAAACATTGCACTCCTG 59.127 47.619 0.00 0.00 0.00 3.86
7879 9908 1.873591 GTCGACAAACATTGCACTCCT 59.126 47.619 11.55 0.00 0.00 3.69
7883 10257 0.584396 TCCGTCGACAAACATTGCAC 59.416 50.000 17.16 0.00 0.00 4.57
7885 10259 2.159627 AGATTCCGTCGACAAACATTGC 59.840 45.455 17.16 0.00 0.00 3.56
7889 10263 2.400399 GACAGATTCCGTCGACAAACA 58.600 47.619 17.16 0.00 0.00 2.83
7899 10273 3.372954 GGTAATGAGACGACAGATTCCG 58.627 50.000 0.00 0.00 0.00 4.30
7910 10284 2.993899 CTGTGTGAACCGGTAATGAGAC 59.006 50.000 8.00 0.00 0.00 3.36
7931 10305 5.471257 AGTGTAAGACGAAATCTGGAGAAC 58.529 41.667 0.00 0.00 37.88 3.01
7949 10323 8.717821 CCTCATCTGAAATTTTTACGAAGTGTA 58.282 33.333 0.00 0.00 45.73 2.90
7950 10324 7.584987 CCTCATCTGAAATTTTTACGAAGTGT 58.415 34.615 0.00 0.00 45.73 3.55
7951 10325 6.524586 GCCTCATCTGAAATTTTTACGAAGTG 59.475 38.462 0.00 0.00 45.73 3.16
7953 10327 6.846350 AGCCTCATCTGAAATTTTTACGAAG 58.154 36.000 0.00 0.00 0.00 3.79
7954 10328 6.817765 AGCCTCATCTGAAATTTTTACGAA 57.182 33.333 0.00 0.00 0.00 3.85
7955 10329 7.103641 ACTAGCCTCATCTGAAATTTTTACGA 58.896 34.615 0.00 0.00 0.00 3.43
7956 10330 7.308782 ACTAGCCTCATCTGAAATTTTTACG 57.691 36.000 0.00 0.00 0.00 3.18
7957 10331 9.384764 ACTACTAGCCTCATCTGAAATTTTTAC 57.615 33.333 0.00 0.00 0.00 2.01
7959 10333 9.384764 GTACTACTAGCCTCATCTGAAATTTTT 57.615 33.333 0.00 0.00 0.00 1.94
8047 10424 3.184178 GGTGAACCAATTTGCATTTCGTG 59.816 43.478 0.00 0.00 35.64 4.35
8048 10425 3.181471 TGGTGAACCAATTTGCATTTCGT 60.181 39.130 0.00 0.00 44.35 3.85
8049 10426 3.388308 TGGTGAACCAATTTGCATTTCG 58.612 40.909 0.00 0.00 44.35 3.46
8061 10438 3.319972 GTGTAGTAGTCTGTGGTGAACCA 59.680 47.826 0.00 0.00 45.30 3.67
8062 10439 3.305881 GGTGTAGTAGTCTGTGGTGAACC 60.306 52.174 0.00 0.00 0.00 3.62
8063 10440 3.319972 TGGTGTAGTAGTCTGTGGTGAAC 59.680 47.826 0.00 0.00 0.00 3.18
8064 10441 3.319972 GTGGTGTAGTAGTCTGTGGTGAA 59.680 47.826 0.00 0.00 0.00 3.18
8065 10442 2.889045 GTGGTGTAGTAGTCTGTGGTGA 59.111 50.000 0.00 0.00 0.00 4.02
8066 10443 2.351447 CGTGGTGTAGTAGTCTGTGGTG 60.351 54.545 0.00 0.00 0.00 4.17
8067 10444 1.884579 CGTGGTGTAGTAGTCTGTGGT 59.115 52.381 0.00 0.00 0.00 4.16
8068 10445 1.402456 GCGTGGTGTAGTAGTCTGTGG 60.402 57.143 0.00 0.00 0.00 4.17
8069 10446 1.268625 TGCGTGGTGTAGTAGTCTGTG 59.731 52.381 0.00 0.00 0.00 3.66
8070 10447 1.612676 TGCGTGGTGTAGTAGTCTGT 58.387 50.000 0.00 0.00 0.00 3.41
8071 10448 2.163613 TCATGCGTGGTGTAGTAGTCTG 59.836 50.000 5.98 0.00 0.00 3.51
8072 10449 2.443416 TCATGCGTGGTGTAGTAGTCT 58.557 47.619 5.98 0.00 0.00 3.24
8073 10450 2.933495 TCATGCGTGGTGTAGTAGTC 57.067 50.000 5.98 0.00 0.00 2.59
8074 10451 3.194755 TCATTCATGCGTGGTGTAGTAGT 59.805 43.478 5.98 0.00 0.00 2.73
8075 10452 3.780902 TCATTCATGCGTGGTGTAGTAG 58.219 45.455 5.98 0.00 0.00 2.57
8076 10453 3.878160 TCATTCATGCGTGGTGTAGTA 57.122 42.857 5.98 0.00 0.00 1.82
8077 10454 2.742053 GTTCATTCATGCGTGGTGTAGT 59.258 45.455 5.98 0.00 0.00 2.73
8078 10455 2.222796 CGTTCATTCATGCGTGGTGTAG 60.223 50.000 5.98 0.00 0.00 2.74
8079 10456 1.729517 CGTTCATTCATGCGTGGTGTA 59.270 47.619 5.98 0.00 0.00 2.90
8080 10457 0.516877 CGTTCATTCATGCGTGGTGT 59.483 50.000 5.98 0.00 0.00 4.16
8081 10458 0.179192 CCGTTCATTCATGCGTGGTG 60.179 55.000 5.98 6.01 0.00 4.17
8082 10459 0.605319 ACCGTTCATTCATGCGTGGT 60.605 50.000 5.98 0.00 0.00 4.16
8083 10460 0.521291 AACCGTTCATTCATGCGTGG 59.479 50.000 5.98 0.00 0.00 4.94
8084 10461 2.769376 GTAACCGTTCATTCATGCGTG 58.231 47.619 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.