Multiple sequence alignment - TraesCS3A01G290400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G290400 chr3A 100.000 2581 0 0 1 2581 519275567 519272987 0.000000e+00 4767.0
1 TraesCS3A01G290400 chr3A 89.583 48 4 1 596 642 737660070 737660117 2.770000e-05 60.2
2 TraesCS3A01G290400 chr3B 88.726 2182 161 40 439 2575 526125271 526123130 0.000000e+00 2588.0
3 TraesCS3A01G290400 chr3D 88.638 1461 109 25 317 1737 400340403 400338960 0.000000e+00 1725.0
4 TraesCS3A01G290400 chr3D 86.436 752 58 18 1728 2436 400338914 400338164 0.000000e+00 784.0
5 TraesCS3A01G290400 chr6B 86.275 204 26 2 1038 1240 77111887 77112089 1.200000e-53 220.0
6 TraesCS3A01G290400 chr7D 84.397 141 18 4 594 732 451201703 451201565 4.480000e-28 135.0
7 TraesCS3A01G290400 chr2A 90.323 62 5 1 589 650 768631906 768631966 2.130000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G290400 chr3A 519272987 519275567 2580 True 4767.0 4767 100.000 1 2581 1 chr3A.!!$R1 2580
1 TraesCS3A01G290400 chr3B 526123130 526125271 2141 True 2588.0 2588 88.726 439 2575 1 chr3B.!!$R1 2136
2 TraesCS3A01G290400 chr3D 400338164 400340403 2239 True 1254.5 1725 87.537 317 2436 2 chr3D.!!$R1 2119

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.035439 GGGGGCGAATCTTCACAAGA 60.035 55.0 0.00 0.0 42.69 3.02 F
291 292 0.100682 CTTGCTTCGTCGCCTAGCTA 59.899 55.0 12.71 0.0 35.93 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 1383 1.067635 GCATCCATTCCAACCACACAC 60.068 52.381 0.0 0.0 0.0 3.82 R
2043 2172 1.145571 ACTGGGAACTACTTTGGGCA 58.854 50.000 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.538760 AGCTCTTGGGAGGTGGGA 59.461 61.111 0.00 0.00 46.88 4.37
20 21 1.083706 AGCTCTTGGGAGGTGGGAT 59.916 57.895 0.00 0.00 46.88 3.85
21 22 1.225704 GCTCTTGGGAGGTGGGATG 59.774 63.158 0.00 0.00 39.80 3.51
22 23 1.918253 CTCTTGGGAGGTGGGATGG 59.082 63.158 0.00 0.00 36.03 3.51
23 24 1.619363 TCTTGGGAGGTGGGATGGG 60.619 63.158 0.00 0.00 0.00 4.00
24 25 2.616893 TTGGGAGGTGGGATGGGG 60.617 66.667 0.00 0.00 0.00 4.96
25 26 4.777546 TGGGAGGTGGGATGGGGG 62.778 72.222 0.00 0.00 0.00 5.40
29 30 4.843331 AGGTGGGATGGGGGCGAT 62.843 66.667 0.00 0.00 0.00 4.58
30 31 4.586235 GGTGGGATGGGGGCGATG 62.586 72.222 0.00 0.00 0.00 3.84
31 32 4.586235 GTGGGATGGGGGCGATGG 62.586 72.222 0.00 0.00 0.00 3.51
32 33 4.833495 TGGGATGGGGGCGATGGA 62.833 66.667 0.00 0.00 0.00 3.41
33 34 3.260100 GGGATGGGGGCGATGGAT 61.260 66.667 0.00 0.00 0.00 3.41
34 35 2.034687 GGATGGGGGCGATGGATG 59.965 66.667 0.00 0.00 0.00 3.51
35 36 2.528818 GGATGGGGGCGATGGATGA 61.529 63.158 0.00 0.00 0.00 2.92
36 37 1.002868 GATGGGGGCGATGGATGAG 60.003 63.158 0.00 0.00 0.00 2.90
37 38 2.475371 GATGGGGGCGATGGATGAGG 62.475 65.000 0.00 0.00 0.00 3.86
38 39 2.849162 GGGGGCGATGGATGAGGA 60.849 66.667 0.00 0.00 0.00 3.71
39 40 2.427753 GGGGCGATGGATGAGGAC 59.572 66.667 0.00 0.00 0.00 3.85
40 41 2.029666 GGGCGATGGATGAGGACG 59.970 66.667 0.00 0.00 0.00 4.79
41 42 2.498941 GGGCGATGGATGAGGACGA 61.499 63.158 0.00 0.00 0.00 4.20
42 43 1.006805 GGCGATGGATGAGGACGAG 60.007 63.158 0.00 0.00 0.00 4.18
43 44 1.006805 GCGATGGATGAGGACGAGG 60.007 63.158 0.00 0.00 0.00 4.63
44 45 1.456196 GCGATGGATGAGGACGAGGA 61.456 60.000 0.00 0.00 0.00 3.71
45 46 0.312416 CGATGGATGAGGACGAGGAC 59.688 60.000 0.00 0.00 0.00 3.85
46 47 1.403814 GATGGATGAGGACGAGGACA 58.596 55.000 0.00 0.00 0.00 4.02
47 48 1.339610 GATGGATGAGGACGAGGACAG 59.660 57.143 0.00 0.00 0.00 3.51
48 49 1.323271 TGGATGAGGACGAGGACAGC 61.323 60.000 0.00 0.00 0.00 4.40
49 50 1.064946 GATGAGGACGAGGACAGCG 59.935 63.158 0.00 0.00 0.00 5.18
50 51 2.343163 GATGAGGACGAGGACAGCGG 62.343 65.000 0.00 0.00 0.00 5.52
51 52 4.500116 GAGGACGAGGACAGCGGC 62.500 72.222 0.00 0.00 35.64 6.53
72 73 3.293702 GCTTCCTGCTCGTCTCCT 58.706 61.111 0.00 0.00 38.95 3.69
73 74 1.140804 GCTTCCTGCTCGTCTCCTC 59.859 63.158 0.00 0.00 38.95 3.71
74 75 1.813192 CTTCCTGCTCGTCTCCTCC 59.187 63.158 0.00 0.00 0.00 4.30
75 76 0.967887 CTTCCTGCTCGTCTCCTCCA 60.968 60.000 0.00 0.00 0.00 3.86
76 77 0.324738 TTCCTGCTCGTCTCCTCCAT 60.325 55.000 0.00 0.00 0.00 3.41
77 78 1.039785 TCCTGCTCGTCTCCTCCATG 61.040 60.000 0.00 0.00 0.00 3.66
78 79 1.440893 CTGCTCGTCTCCTCCATGG 59.559 63.158 4.97 4.97 37.10 3.66
79 80 2.025767 CTGCTCGTCTCCTCCATGGG 62.026 65.000 13.02 2.26 36.20 4.00
80 81 2.818132 CTCGTCTCCTCCATGGGC 59.182 66.667 13.02 0.00 36.20 5.36
81 82 3.144120 CTCGTCTCCTCCATGGGCG 62.144 68.421 13.02 3.27 36.20 6.13
82 83 3.461773 CGTCTCCTCCATGGGCGT 61.462 66.667 13.02 0.00 36.20 5.68
83 84 2.501610 GTCTCCTCCATGGGCGTC 59.498 66.667 13.02 0.00 36.20 5.19
84 85 2.038813 TCTCCTCCATGGGCGTCA 59.961 61.111 13.02 0.00 36.20 4.35
85 86 2.187946 CTCCTCCATGGGCGTCAC 59.812 66.667 13.02 0.00 36.20 3.67
86 87 3.391665 CTCCTCCATGGGCGTCACC 62.392 68.421 13.02 0.00 36.20 4.02
87 88 3.716195 CCTCCATGGGCGTCACCA 61.716 66.667 13.02 0.00 46.24 4.17
88 89 2.124983 CTCCATGGGCGTCACCAG 60.125 66.667 13.02 0.00 45.20 4.00
89 90 2.606213 TCCATGGGCGTCACCAGA 60.606 61.111 13.02 0.00 45.20 3.86
90 91 1.976132 CTCCATGGGCGTCACCAGAT 61.976 60.000 13.02 0.00 45.20 2.90
91 92 1.524621 CCATGGGCGTCACCAGATC 60.525 63.158 2.85 0.00 45.20 2.75
92 93 1.524002 CATGGGCGTCACCAGATCT 59.476 57.895 0.00 0.00 45.20 2.75
93 94 0.531532 CATGGGCGTCACCAGATCTC 60.532 60.000 0.00 0.00 45.20 2.75
94 95 1.690219 ATGGGCGTCACCAGATCTCC 61.690 60.000 0.00 0.00 45.20 3.71
95 96 2.060980 GGGCGTCACCAGATCTCCT 61.061 63.158 0.00 0.00 42.05 3.69
96 97 1.439644 GGCGTCACCAGATCTCCTC 59.560 63.158 0.00 0.00 38.86 3.71
97 98 1.064946 GCGTCACCAGATCTCCTCG 59.935 63.158 0.00 0.00 0.00 4.63
98 99 1.730487 CGTCACCAGATCTCCTCGG 59.270 63.158 0.00 0.00 0.00 4.63
99 100 1.729470 CGTCACCAGATCTCCTCGGG 61.729 65.000 0.00 0.00 44.15 5.14
102 103 3.543537 CCAGATCTCCTCGGGTGG 58.456 66.667 0.00 0.00 34.76 4.61
103 104 2.801631 CCAGATCTCCTCGGGTGGC 61.802 68.421 0.00 0.00 34.76 5.01
104 105 2.835431 AGATCTCCTCGGGTGGCG 60.835 66.667 0.00 0.00 0.00 5.69
105 106 2.833582 GATCTCCTCGGGTGGCGA 60.834 66.667 0.00 0.00 0.00 5.54
106 107 3.140225 GATCTCCTCGGGTGGCGAC 62.140 68.421 0.00 0.00 0.00 5.19
107 108 3.957435 ATCTCCTCGGGTGGCGACA 62.957 63.158 0.00 0.00 38.70 4.35
108 109 4.135153 CTCCTCGGGTGGCGACAG 62.135 72.222 0.00 0.00 44.46 3.51
109 110 4.671590 TCCTCGGGTGGCGACAGA 62.672 66.667 0.00 0.00 44.46 3.41
110 111 4.135153 CCTCGGGTGGCGACAGAG 62.135 72.222 13.84 13.84 44.46 3.35
111 112 4.803426 CTCGGGTGGCGACAGAGC 62.803 72.222 0.00 0.00 44.46 4.09
113 114 4.803426 CGGGTGGCGACAGAGCTC 62.803 72.222 5.27 5.27 44.46 4.09
114 115 4.459089 GGGTGGCGACAGAGCTCC 62.459 72.222 10.93 0.00 44.46 4.70
115 116 4.459089 GGTGGCGACAGAGCTCCC 62.459 72.222 10.93 4.40 44.46 4.30
116 117 3.386237 GTGGCGACAGAGCTCCCT 61.386 66.667 10.93 0.00 44.46 4.20
117 118 3.385384 TGGCGACAGAGCTCCCTG 61.385 66.667 10.93 5.69 39.93 4.45
118 119 4.828925 GGCGACAGAGCTCCCTGC 62.829 72.222 10.93 9.63 43.29 4.85
127 128 3.293702 GCTCCCTGCTCGTCTTCT 58.706 61.111 0.00 0.00 38.95 2.85
128 129 1.594310 GCTCCCTGCTCGTCTTCTT 59.406 57.895 0.00 0.00 38.95 2.52
129 130 0.818296 GCTCCCTGCTCGTCTTCTTA 59.182 55.000 0.00 0.00 38.95 2.10
130 131 1.204941 GCTCCCTGCTCGTCTTCTTAA 59.795 52.381 0.00 0.00 38.95 1.85
131 132 2.159028 GCTCCCTGCTCGTCTTCTTAAT 60.159 50.000 0.00 0.00 38.95 1.40
132 133 3.452474 CTCCCTGCTCGTCTTCTTAATG 58.548 50.000 0.00 0.00 0.00 1.90
133 134 2.168521 TCCCTGCTCGTCTTCTTAATGG 59.831 50.000 0.00 0.00 0.00 3.16
134 135 2.555199 CCTGCTCGTCTTCTTAATGGG 58.445 52.381 0.00 0.00 0.00 4.00
135 136 1.936547 CTGCTCGTCTTCTTAATGGGC 59.063 52.381 0.00 0.00 0.00 5.36
136 137 0.931005 GCTCGTCTTCTTAATGGGCG 59.069 55.000 0.00 0.00 0.00 6.13
137 138 1.571919 CTCGTCTTCTTAATGGGCGG 58.428 55.000 0.00 0.00 0.00 6.13
138 139 0.461339 TCGTCTTCTTAATGGGCGGC 60.461 55.000 0.00 0.00 0.00 6.53
139 140 1.762222 CGTCTTCTTAATGGGCGGCG 61.762 60.000 0.51 0.51 0.00 6.46
140 141 1.153249 TCTTCTTAATGGGCGGCGG 60.153 57.895 9.78 0.00 0.00 6.13
141 142 2.826738 TTCTTAATGGGCGGCGGC 60.827 61.111 26.59 26.59 38.90 6.53
144 145 4.779966 TTAATGGGCGGCGGCGAA 62.780 61.111 36.87 19.73 41.24 4.70
162 163 3.324117 CGAAGCTACATCTCCATCATGG 58.676 50.000 0.00 0.00 39.43 3.66
163 164 3.006217 CGAAGCTACATCTCCATCATGGA 59.994 47.826 6.13 6.13 45.98 3.41
176 177 4.412796 CATCATGGATGGCGGTATATCT 57.587 45.455 0.00 0.00 36.51 1.98
177 178 4.375272 CATCATGGATGGCGGTATATCTC 58.625 47.826 0.00 0.00 36.51 2.75
178 179 2.766263 TCATGGATGGCGGTATATCTCC 59.234 50.000 0.00 0.00 0.00 3.71
179 180 2.319025 TGGATGGCGGTATATCTCCA 57.681 50.000 0.00 0.00 0.00 3.86
180 181 2.832838 TGGATGGCGGTATATCTCCAT 58.167 47.619 7.24 7.24 41.63 3.41
181 182 2.501316 TGGATGGCGGTATATCTCCATG 59.499 50.000 12.30 0.00 39.25 3.66
182 183 2.766263 GGATGGCGGTATATCTCCATGA 59.234 50.000 12.30 0.00 39.25 3.07
183 184 3.181471 GGATGGCGGTATATCTCCATGAG 60.181 52.174 12.30 0.00 39.25 2.90
184 185 1.550524 TGGCGGTATATCTCCATGAGC 59.449 52.381 0.00 0.00 0.00 4.26
185 186 1.469940 GGCGGTATATCTCCATGAGCG 60.470 57.143 0.00 0.00 0.00 5.03
186 187 1.469940 GCGGTATATCTCCATGAGCGG 60.470 57.143 0.00 0.00 0.00 5.52
187 188 1.819288 CGGTATATCTCCATGAGCGGT 59.181 52.381 0.00 0.00 0.00 5.68
188 189 2.416027 CGGTATATCTCCATGAGCGGTG 60.416 54.545 0.00 0.00 0.00 4.94
189 190 2.093973 GGTATATCTCCATGAGCGGTGG 60.094 54.545 0.00 0.00 38.11 4.61
190 191 1.722034 ATATCTCCATGAGCGGTGGT 58.278 50.000 0.00 0.00 37.96 4.16
191 192 1.496060 TATCTCCATGAGCGGTGGTT 58.504 50.000 0.00 0.00 37.96 3.67
192 193 0.179000 ATCTCCATGAGCGGTGGTTC 59.821 55.000 0.00 0.00 37.96 3.62
193 194 1.191489 TCTCCATGAGCGGTGGTTCA 61.191 55.000 0.00 0.00 37.80 3.18
194 195 0.321564 CTCCATGAGCGGTGGTTCAA 60.322 55.000 0.00 0.00 36.94 2.69
195 196 0.605319 TCCATGAGCGGTGGTTCAAC 60.605 55.000 0.00 0.00 36.94 3.18
196 197 0.606401 CCATGAGCGGTGGTTCAACT 60.606 55.000 0.00 0.00 36.94 3.16
197 198 0.798776 CATGAGCGGTGGTTCAACTC 59.201 55.000 0.00 0.00 36.94 3.01
198 199 0.321653 ATGAGCGGTGGTTCAACTCC 60.322 55.000 0.00 0.00 36.94 3.85
199 200 1.371558 GAGCGGTGGTTCAACTCCT 59.628 57.895 0.00 0.00 0.00 3.69
200 201 0.250338 GAGCGGTGGTTCAACTCCTT 60.250 55.000 0.00 0.00 0.00 3.36
201 202 0.250338 AGCGGTGGTTCAACTCCTTC 60.250 55.000 0.00 0.00 0.00 3.46
202 203 1.235281 GCGGTGGTTCAACTCCTTCC 61.235 60.000 0.00 0.00 0.00 3.46
203 204 0.396811 CGGTGGTTCAACTCCTTCCT 59.603 55.000 0.00 0.00 0.00 3.36
204 205 1.202770 CGGTGGTTCAACTCCTTCCTT 60.203 52.381 0.00 0.00 0.00 3.36
205 206 2.038033 CGGTGGTTCAACTCCTTCCTTA 59.962 50.000 0.00 0.00 0.00 2.69
206 207 3.676093 GGTGGTTCAACTCCTTCCTTAG 58.324 50.000 0.00 0.00 0.00 2.18
207 208 3.559384 GGTGGTTCAACTCCTTCCTTAGG 60.559 52.174 0.00 0.00 46.27 2.69
208 209 2.039879 TGGTTCAACTCCTTCCTTAGGC 59.960 50.000 0.00 0.00 44.37 3.93
209 210 2.618302 GGTTCAACTCCTTCCTTAGGCC 60.618 54.545 0.00 0.00 44.37 5.19
210 211 1.286248 TCAACTCCTTCCTTAGGCCC 58.714 55.000 0.00 0.00 44.37 5.80
211 212 0.991920 CAACTCCTTCCTTAGGCCCA 59.008 55.000 0.00 0.00 44.37 5.36
212 213 1.566231 CAACTCCTTCCTTAGGCCCAT 59.434 52.381 0.00 0.00 44.37 4.00
213 214 1.987080 ACTCCTTCCTTAGGCCCATT 58.013 50.000 0.00 0.00 44.37 3.16
214 215 1.847088 ACTCCTTCCTTAGGCCCATTC 59.153 52.381 0.00 0.00 44.37 2.67
215 216 1.846439 CTCCTTCCTTAGGCCCATTCA 59.154 52.381 0.00 0.00 44.37 2.57
216 217 2.444766 CTCCTTCCTTAGGCCCATTCAT 59.555 50.000 0.00 0.00 44.37 2.57
217 218 2.175499 TCCTTCCTTAGGCCCATTCATG 59.825 50.000 0.00 0.00 44.37 3.07
218 219 2.754186 CCTTCCTTAGGCCCATTCATGG 60.754 54.545 0.00 0.00 40.44 3.66
226 227 4.605064 CCATTCATGGGGGCGAAT 57.395 55.556 0.00 0.00 44.31 3.34
227 228 2.344535 CCATTCATGGGGGCGAATC 58.655 57.895 0.00 0.00 44.31 2.52
228 229 0.178981 CCATTCATGGGGGCGAATCT 60.179 55.000 0.00 0.00 44.31 2.40
229 230 1.696063 CATTCATGGGGGCGAATCTT 58.304 50.000 0.00 0.00 29.38 2.40
230 231 1.610522 CATTCATGGGGGCGAATCTTC 59.389 52.381 0.00 0.00 29.38 2.87
231 232 0.623194 TTCATGGGGGCGAATCTTCA 59.377 50.000 0.00 0.00 0.00 3.02
232 233 0.107214 TCATGGGGGCGAATCTTCAC 60.107 55.000 0.00 0.00 0.00 3.18
233 234 0.394216 CATGGGGGCGAATCTTCACA 60.394 55.000 0.00 0.00 0.00 3.58
234 235 0.331278 ATGGGGGCGAATCTTCACAA 59.669 50.000 0.00 0.00 0.00 3.33
235 236 0.322456 TGGGGGCGAATCTTCACAAG 60.322 55.000 0.00 0.00 0.00 3.16
236 237 0.035439 GGGGGCGAATCTTCACAAGA 60.035 55.000 0.00 0.00 42.69 3.02
237 238 1.373570 GGGGCGAATCTTCACAAGAG 58.626 55.000 0.00 0.00 41.61 2.85
238 239 1.066143 GGGGCGAATCTTCACAAGAGA 60.066 52.381 0.00 0.00 41.61 3.10
239 240 2.420687 GGGGCGAATCTTCACAAGAGAT 60.421 50.000 0.00 0.00 41.61 2.75
240 241 2.611292 GGGCGAATCTTCACAAGAGATG 59.389 50.000 0.00 0.00 41.61 2.90
241 242 3.265791 GGCGAATCTTCACAAGAGATGT 58.734 45.455 0.00 0.00 45.34 3.06
242 243 3.686726 GGCGAATCTTCACAAGAGATGTT 59.313 43.478 0.00 0.00 41.46 2.71
243 244 4.154918 GGCGAATCTTCACAAGAGATGTTT 59.845 41.667 0.00 0.00 41.46 2.83
244 245 5.335191 GGCGAATCTTCACAAGAGATGTTTT 60.335 40.000 0.00 0.00 41.46 2.43
245 246 6.145535 GCGAATCTTCACAAGAGATGTTTTT 58.854 36.000 0.00 0.00 41.46 1.94
246 247 6.087291 GCGAATCTTCACAAGAGATGTTTTTG 59.913 38.462 0.00 0.00 41.46 2.44
247 248 6.087291 CGAATCTTCACAAGAGATGTTTTTGC 59.913 38.462 0.00 0.00 41.46 3.68
248 249 6.645790 ATCTTCACAAGAGATGTTTTTGCT 57.354 33.333 0.00 0.00 41.46 3.91
249 250 6.064846 TCTTCACAAGAGATGTTTTTGCTC 57.935 37.500 0.00 0.00 41.46 4.26
250 251 5.824624 TCTTCACAAGAGATGTTTTTGCTCT 59.175 36.000 0.00 0.00 41.46 4.09
251 252 5.679734 TCACAAGAGATGTTTTTGCTCTC 57.320 39.130 0.00 0.00 41.46 3.20
252 253 5.125356 TCACAAGAGATGTTTTTGCTCTCA 58.875 37.500 0.00 0.00 41.46 3.27
253 254 5.766670 TCACAAGAGATGTTTTTGCTCTCAT 59.233 36.000 0.00 0.00 41.46 2.90
254 255 6.263842 TCACAAGAGATGTTTTTGCTCTCATT 59.736 34.615 0.00 0.00 41.46 2.57
255 256 7.445096 TCACAAGAGATGTTTTTGCTCTCATTA 59.555 33.333 0.00 0.00 41.46 1.90
256 257 8.077991 CACAAGAGATGTTTTTGCTCTCATTAA 58.922 33.333 0.00 0.00 41.46 1.40
257 258 8.295288 ACAAGAGATGTTTTTGCTCTCATTAAG 58.705 33.333 0.00 0.00 40.06 1.85
258 259 8.509690 CAAGAGATGTTTTTGCTCTCATTAAGA 58.490 33.333 0.00 0.00 38.00 2.10
259 260 8.627208 AGAGATGTTTTTGCTCTCATTAAGAA 57.373 30.769 0.00 0.00 38.29 2.52
260 261 9.071276 AGAGATGTTTTTGCTCTCATTAAGAAA 57.929 29.630 0.00 0.00 38.29 2.52
261 262 9.122613 GAGATGTTTTTGCTCTCATTAAGAAAC 57.877 33.333 0.00 0.00 36.31 2.78
262 263 8.632679 AGATGTTTTTGCTCTCATTAAGAAACA 58.367 29.630 0.00 0.00 35.36 2.83
263 264 9.415544 GATGTTTTTGCTCTCATTAAGAAACAT 57.584 29.630 9.94 9.94 40.58 2.71
264 265 8.578308 TGTTTTTGCTCTCATTAAGAAACATG 57.422 30.769 0.00 0.00 29.13 3.21
265 266 8.196771 TGTTTTTGCTCTCATTAAGAAACATGT 58.803 29.630 0.00 0.00 29.13 3.21
266 267 9.034544 GTTTTTGCTCTCATTAAGAAACATGTT 57.965 29.630 4.92 4.92 32.23 2.71
267 268 8.578308 TTTTGCTCTCATTAAGAAACATGTTG 57.422 30.769 12.82 0.00 32.23 3.33
268 269 6.882610 TGCTCTCATTAAGAAACATGTTGT 57.117 33.333 12.82 3.41 32.23 3.32
269 270 7.977789 TGCTCTCATTAAGAAACATGTTGTA 57.022 32.000 12.82 2.40 32.23 2.41
270 271 8.389779 TGCTCTCATTAAGAAACATGTTGTAA 57.610 30.769 12.82 11.29 32.23 2.41
271 272 8.845227 TGCTCTCATTAAGAAACATGTTGTAAA 58.155 29.630 12.82 5.21 32.23 2.01
272 273 9.118236 GCTCTCATTAAGAAACATGTTGTAAAC 57.882 33.333 12.82 2.26 39.70 2.01
284 285 2.295696 GTTGTAAACTTGCTTCGTCGC 58.704 47.619 0.00 0.00 45.32 5.19
285 286 0.863144 TGTAAACTTGCTTCGTCGCC 59.137 50.000 0.00 0.00 0.00 5.54
286 287 1.145803 GTAAACTTGCTTCGTCGCCT 58.854 50.000 0.00 0.00 0.00 5.52
287 288 2.288334 TGTAAACTTGCTTCGTCGCCTA 60.288 45.455 0.00 0.00 0.00 3.93
288 289 1.429463 AAACTTGCTTCGTCGCCTAG 58.571 50.000 0.00 0.00 0.00 3.02
289 290 1.014564 AACTTGCTTCGTCGCCTAGC 61.015 55.000 6.82 6.82 35.50 3.42
290 291 1.153745 CTTGCTTCGTCGCCTAGCT 60.154 57.895 12.71 0.00 35.93 3.32
291 292 0.100682 CTTGCTTCGTCGCCTAGCTA 59.899 55.000 12.71 0.00 35.93 3.32
292 293 0.744874 TTGCTTCGTCGCCTAGCTAT 59.255 50.000 12.71 0.00 35.93 2.97
293 294 0.311165 TGCTTCGTCGCCTAGCTATC 59.689 55.000 12.71 0.00 35.93 2.08
294 295 0.594110 GCTTCGTCGCCTAGCTATCT 59.406 55.000 0.00 0.00 32.26 1.98
295 296 1.805345 GCTTCGTCGCCTAGCTATCTA 59.195 52.381 0.00 0.00 32.26 1.98
296 297 2.420722 GCTTCGTCGCCTAGCTATCTAT 59.579 50.000 0.00 0.00 32.26 1.98
297 298 3.119779 GCTTCGTCGCCTAGCTATCTATT 60.120 47.826 0.00 0.00 32.26 1.73
298 299 4.094590 GCTTCGTCGCCTAGCTATCTATTA 59.905 45.833 0.00 0.00 32.26 0.98
299 300 5.391736 GCTTCGTCGCCTAGCTATCTATTAA 60.392 44.000 0.00 0.00 32.26 1.40
300 301 5.798015 TCGTCGCCTAGCTATCTATTAAG 57.202 43.478 0.00 0.00 0.00 1.85
301 302 5.485620 TCGTCGCCTAGCTATCTATTAAGA 58.514 41.667 0.00 0.00 35.80 2.10
302 303 5.350914 TCGTCGCCTAGCTATCTATTAAGAC 59.649 44.000 0.00 0.00 33.57 3.01
303 304 5.352016 CGTCGCCTAGCTATCTATTAAGACT 59.648 44.000 0.00 0.00 33.57 3.24
304 305 6.128227 CGTCGCCTAGCTATCTATTAAGACTT 60.128 42.308 0.00 0.00 33.57 3.01
305 306 7.024768 GTCGCCTAGCTATCTATTAAGACTTG 58.975 42.308 0.00 0.00 33.57 3.16
306 307 6.151312 TCGCCTAGCTATCTATTAAGACTTGG 59.849 42.308 0.00 0.00 33.57 3.61
307 308 6.071840 CGCCTAGCTATCTATTAAGACTTGGT 60.072 42.308 0.00 0.00 33.57 3.67
308 309 7.524038 CGCCTAGCTATCTATTAAGACTTGGTT 60.524 40.741 0.00 0.00 33.57 3.67
309 310 7.600752 GCCTAGCTATCTATTAAGACTTGGTTG 59.399 40.741 0.00 0.00 33.57 3.77
310 311 8.861086 CCTAGCTATCTATTAAGACTTGGTTGA 58.139 37.037 0.00 0.00 33.57 3.18
311 312 9.906660 CTAGCTATCTATTAAGACTTGGTTGAG 57.093 37.037 0.00 0.00 33.57 3.02
312 313 8.540507 AGCTATCTATTAAGACTTGGTTGAGA 57.459 34.615 0.00 0.00 33.57 3.27
313 314 8.982723 AGCTATCTATTAAGACTTGGTTGAGAA 58.017 33.333 0.00 0.00 33.57 2.87
314 315 9.036671 GCTATCTATTAAGACTTGGTTGAGAAC 57.963 37.037 0.00 0.00 33.57 3.01
331 332 6.093617 TGAGAACTAGAATTAGTCCTCCCT 57.906 41.667 0.00 0.00 39.72 4.20
332 333 6.503944 TGAGAACTAGAATTAGTCCTCCCTT 58.496 40.000 0.00 0.00 39.72 3.95
333 334 6.608002 TGAGAACTAGAATTAGTCCTCCCTTC 59.392 42.308 0.00 0.00 39.72 3.46
336 338 8.345306 AGAACTAGAATTAGTCCTCCCTTCTTA 58.655 37.037 0.00 0.00 39.20 2.10
337 339 8.912614 AACTAGAATTAGTCCTCCCTTCTTAA 57.087 34.615 0.00 0.00 39.20 1.85
346 348 2.116238 CTCCCTTCTTAATGGGACGGA 58.884 52.381 6.87 0.00 46.69 4.69
349 351 1.557832 CCTTCTTAATGGGACGGACCA 59.442 52.381 2.69 2.69 46.24 4.02
354 356 1.887797 TAATGGGACGGACCAAGGAT 58.112 50.000 4.39 0.00 45.13 3.24
357 359 2.743179 GGGACGGACCAAGGATCCC 61.743 68.421 8.55 0.16 42.30 3.85
358 360 2.743179 GGACGGACCAAGGATCCCC 61.743 68.421 8.55 0.36 38.79 4.81
370 372 1.838077 AGGATCCCCTTGTAGGTTTCG 59.162 52.381 8.55 0.00 40.78 3.46
386 388 1.916506 TTCGAAATGGGCCACATCAA 58.083 45.000 9.28 4.93 39.40 2.57
388 390 0.179129 CGAAATGGGCCACATCAAGC 60.179 55.000 9.28 0.00 39.40 4.01
407 409 0.445829 CGGCACATGACGCATAAACA 59.554 50.000 0.00 0.00 40.91 2.83
409 411 1.468520 GGCACATGACGCATAAACAGT 59.531 47.619 0.00 0.00 0.00 3.55
416 418 5.163405 ACATGACGCATAAACAGTAGGATCT 60.163 40.000 0.00 0.00 0.00 2.75
425 427 8.417884 GCATAAACAGTAGGATCTAGAAGACTT 58.582 37.037 0.00 0.00 0.00 3.01
428 430 7.556733 AACAGTAGGATCTAGAAGACTTACG 57.443 40.000 0.00 3.12 0.00 3.18
434 436 3.466712 TCTAGAAGACTTACGTGCACG 57.533 47.619 35.99 35.99 46.33 5.34
446 448 1.671054 GTGCACGCCAAGAAGCCTA 60.671 57.895 0.00 0.00 0.00 3.93
451 453 2.352715 GCACGCCAAGAAGCCTAATTTT 60.353 45.455 0.00 0.00 0.00 1.82
475 477 6.962182 TGTGGAAGATTCAGTTTCCTCATAT 58.038 36.000 5.03 0.00 42.67 1.78
481 483 6.529220 AGATTCAGTTTCCTCATATGTAGCC 58.471 40.000 1.90 0.00 0.00 3.93
503 506 3.428589 CGACTAGGTGTTGTAACCCTAGC 60.429 52.174 24.10 19.01 44.76 3.42
544 556 2.170607 GGGCTAGGCTTGTAGATGACAA 59.829 50.000 16.80 0.00 46.03 3.18
561 573 8.193953 AGATGACAAATTACATTCTTTGGGTT 57.806 30.769 0.00 0.00 36.81 4.11
567 579 6.976934 AATTACATTCTTTGGGTTGACACT 57.023 33.333 0.00 0.00 0.00 3.55
574 586 1.846007 TTGGGTTGACACTTGCACTT 58.154 45.000 0.00 0.00 0.00 3.16
576 588 3.006112 TGGGTTGACACTTGCACTTTA 57.994 42.857 0.00 0.00 0.00 1.85
585 597 8.557029 GTTGACACTTGCACTTTATACTTACTT 58.443 33.333 0.00 0.00 0.00 2.24
586 598 8.306680 TGACACTTGCACTTTATACTTACTTC 57.693 34.615 0.00 0.00 0.00 3.01
592 604 5.865552 TGCACTTTATACTTACTTCGACACC 59.134 40.000 0.00 0.00 0.00 4.16
615 627 1.808411 AACACAAGCAGGACGTATGG 58.192 50.000 0.00 0.00 0.00 2.74
651 663 4.715297 AGAGAGCCCGAACCTAGATAAAAA 59.285 41.667 0.00 0.00 0.00 1.94
652 664 4.767478 AGAGCCCGAACCTAGATAAAAAC 58.233 43.478 0.00 0.00 0.00 2.43
660 672 5.485620 GAACCTAGATAAAAACCGTGTCCT 58.514 41.667 0.00 0.00 0.00 3.85
666 678 5.812286 AGATAAAAACCGTGTCCTTGGTAT 58.188 37.500 0.00 0.00 37.54 2.73
670 682 3.713826 AACCGTGTCCTTGGTATCATT 57.286 42.857 0.00 0.00 37.54 2.57
762 774 3.733960 TCTGCCCGTCGTCACTCG 61.734 66.667 0.00 0.00 41.41 4.18
779 791 2.628178 ACTCGAACATCAGTCAGGAACA 59.372 45.455 0.00 0.00 0.00 3.18
784 796 4.552767 CGAACATCAGTCAGGAACACAAAC 60.553 45.833 0.00 0.00 0.00 2.93
848 865 8.594881 TTATGTTCTCACTTCAACTTCTTCTC 57.405 34.615 0.00 0.00 0.00 2.87
849 866 5.360591 TGTTCTCACTTCAACTTCTTCTCC 58.639 41.667 0.00 0.00 0.00 3.71
850 867 5.129485 TGTTCTCACTTCAACTTCTTCTCCT 59.871 40.000 0.00 0.00 0.00 3.69
851 868 6.323996 TGTTCTCACTTCAACTTCTTCTCCTA 59.676 38.462 0.00 0.00 0.00 2.94
852 869 7.015682 TGTTCTCACTTCAACTTCTTCTCCTAT 59.984 37.037 0.00 0.00 0.00 2.57
854 871 8.830915 TCTCACTTCAACTTCTTCTCCTATAT 57.169 34.615 0.00 0.00 0.00 0.86
855 872 8.908903 TCTCACTTCAACTTCTTCTCCTATATC 58.091 37.037 0.00 0.00 0.00 1.63
856 873 8.595362 TCACTTCAACTTCTTCTCCTATATCA 57.405 34.615 0.00 0.00 0.00 2.15
857 874 8.690884 TCACTTCAACTTCTTCTCCTATATCAG 58.309 37.037 0.00 0.00 0.00 2.90
858 875 8.474025 CACTTCAACTTCTTCTCCTATATCAGT 58.526 37.037 0.00 0.00 0.00 3.41
859 876 8.474025 ACTTCAACTTCTTCTCCTATATCAGTG 58.526 37.037 0.00 0.00 0.00 3.66
860 877 8.595362 TTCAACTTCTTCTCCTATATCAGTGA 57.405 34.615 0.00 0.00 0.00 3.41
1013 1058 1.292061 CGTCTCACCACGAACCAAAA 58.708 50.000 0.00 0.00 42.69 2.44
1015 1060 1.332686 GTCTCACCACGAACCAAAACC 59.667 52.381 0.00 0.00 0.00 3.27
1016 1061 1.065345 TCTCACCACGAACCAAAACCA 60.065 47.619 0.00 0.00 0.00 3.67
1017 1062 1.333619 CTCACCACGAACCAAAACCAG 59.666 52.381 0.00 0.00 0.00 4.00
1018 1063 1.065345 TCACCACGAACCAAAACCAGA 60.065 47.619 0.00 0.00 0.00 3.86
1020 1065 0.666374 CCACGAACCAAAACCAGACC 59.334 55.000 0.00 0.00 0.00 3.85
1021 1066 1.384525 CACGAACCAAAACCAGACCA 58.615 50.000 0.00 0.00 0.00 4.02
1295 1340 2.503061 CAGACCCATCTCTGCCCG 59.497 66.667 0.00 0.00 31.57 6.13
1309 1354 1.880340 GCCCGCATCTCGTTCTCTG 60.880 63.158 0.00 0.00 36.19 3.35
1313 1358 1.272781 CGCATCTCGTTCTCTGTTCC 58.727 55.000 0.00 0.00 0.00 3.62
1316 1361 0.818296 ATCTCGTTCTCTGTTCCCCG 59.182 55.000 0.00 0.00 0.00 5.73
1338 1383 2.167662 ACCCTAAAACAAATCTGGGCG 58.832 47.619 0.00 0.00 38.23 6.13
1339 1384 2.167662 CCCTAAAACAAATCTGGGCGT 58.832 47.619 0.00 0.00 0.00 5.68
1535 1583 5.181245 CCGGAGTATTTTGTTCTCACATGTT 59.819 40.000 0.00 0.00 31.06 2.71
1536 1584 6.079763 CGGAGTATTTTGTTCTCACATGTTG 58.920 40.000 0.00 0.00 31.06 3.33
1537 1585 6.293407 CGGAGTATTTTGTTCTCACATGTTGT 60.293 38.462 0.00 0.00 31.06 3.32
1576 1624 9.807649 AAATAAGATGTAATGAAATGCTGTTCC 57.192 29.630 0.00 0.00 0.00 3.62
1639 1687 6.117911 TGAGGTGAATATTTGTGTTATGCG 57.882 37.500 0.00 0.00 0.00 4.73
1697 1747 1.292223 GCGAGTGTGTGGCCTTCTA 59.708 57.895 3.32 0.00 0.00 2.10
1726 1776 6.579666 ATCAATCATGTTTGTGTGCTTAGT 57.420 33.333 14.58 0.00 0.00 2.24
1829 1935 4.202121 GCGAGTGTATTGGGAGTTCTATCA 60.202 45.833 0.00 0.00 0.00 2.15
1866 1993 9.864034 GACATTTGATTGTTACCTTCATATACG 57.136 33.333 0.00 0.00 0.00 3.06
1878 2005 5.163540 ACCTTCATATACGCTCGAAGTTCTT 60.164 40.000 0.56 0.00 34.38 2.52
1879 2006 5.749109 CCTTCATATACGCTCGAAGTTCTTT 59.251 40.000 0.56 0.00 34.38 2.52
1926 2053 9.743057 CAGTGTCCTATCAGTTTTTATCTAGAG 57.257 37.037 0.00 0.00 0.00 2.43
1941 2068 4.543590 TCTAGAGCCTCTTCTGGTTTTG 57.456 45.455 0.00 0.00 0.00 2.44
1943 2070 2.057922 AGAGCCTCTTCTGGTTTTGGA 58.942 47.619 0.00 0.00 0.00 3.53
1963 2090 4.162651 GGATCCCCATGAAGGCATTAATT 58.837 43.478 0.00 0.00 35.39 1.40
1974 2101 5.355910 TGAAGGCATTAATTTACTTCCGACC 59.644 40.000 15.52 0.00 37.37 4.79
2019 2148 5.489249 AGTGGATGCTTGCTAGATATGATG 58.511 41.667 0.00 0.00 0.00 3.07
2043 2172 4.159135 CCTTTATGGCTTGAATTGTGCTCT 59.841 41.667 0.00 0.00 0.00 4.09
2048 2184 1.250328 CTTGAATTGTGCTCTGCCCA 58.750 50.000 0.00 0.00 0.00 5.36
2056 2192 1.142870 TGTGCTCTGCCCAAAGTAGTT 59.857 47.619 0.00 0.00 0.00 2.24
2058 2194 1.271379 TGCTCTGCCCAAAGTAGTTCC 60.271 52.381 0.00 0.00 0.00 3.62
2090 2226 6.032956 TCGACTGGTATTTTCTGTGTATGT 57.967 37.500 0.00 0.00 0.00 2.29
2114 2250 4.262249 GCTTTATGTTTGGGCCACAGTTTA 60.262 41.667 5.23 0.00 0.00 2.01
2153 2294 8.026607 ACATACATGGTGTATTTACAGTTTTGC 58.973 33.333 4.40 0.00 40.40 3.68
2196 2337 1.401905 GTCCACCGGAGCATTCATTTC 59.598 52.381 9.46 0.00 29.39 2.17
2213 2354 5.639757 TCATTTCTATGTGCCAATTTCACG 58.360 37.500 3.89 0.00 37.26 4.35
2293 2435 9.871238 TTCTTGAACAGTAGGTAGATGTATTTC 57.129 33.333 0.00 0.00 0.00 2.17
2309 2451 5.297547 TGTATTTCAGTGAGAACTGTGGTC 58.702 41.667 5.82 0.00 38.75 4.02
2316 2458 3.378427 AGTGAGAACTGTGGTCAAAAAGC 59.622 43.478 0.00 0.00 0.00 3.51
2317 2459 3.128589 GTGAGAACTGTGGTCAAAAAGCA 59.871 43.478 0.00 0.00 0.00 3.91
2386 2535 3.198409 TGGCATATGTGTTCTAGCAGG 57.802 47.619 4.29 0.00 0.00 4.85
2492 2642 5.934625 GGCATAGTATCAACACTAAGGATGG 59.065 44.000 0.00 0.00 34.77 3.51
2496 2646 6.814954 AGTATCAACACTAAGGATGGACAT 57.185 37.500 0.00 0.00 0.00 3.06
2506 2656 7.554118 ACACTAAGGATGGACATTAATCAGTTG 59.446 37.037 0.00 0.00 0.00 3.16
2510 2660 6.725364 AGGATGGACATTAATCAGTTGTCTT 58.275 36.000 6.21 0.00 39.70 3.01
2512 2662 6.599244 GGATGGACATTAATCAGTTGTCTTCA 59.401 38.462 6.21 0.00 39.70 3.02
2518 2668 9.979270 GACATTAATCAGTTGTCTTCACTTATG 57.021 33.333 0.00 0.00 37.40 1.90
2522 2672 5.868043 TCAGTTGTCTTCACTTATGCATG 57.132 39.130 10.16 0.00 0.00 4.06
2554 2704 7.496529 TCAACAAACTAGAAATGAAGTGAGG 57.503 36.000 0.00 0.00 0.00 3.86
2564 2714 4.558226 AATGAAGTGAGGCATGAGTACA 57.442 40.909 0.00 0.00 0.00 2.90
2566 2716 2.234661 TGAAGTGAGGCATGAGTACAGG 59.765 50.000 0.00 0.00 0.00 4.00
2575 2725 3.492309 GGCATGAGTACAGGATCTGTCAG 60.492 52.174 3.65 0.00 41.21 3.51
2576 2726 3.131933 GCATGAGTACAGGATCTGTCAGT 59.868 47.826 3.65 0.00 41.21 3.41
2577 2727 4.339530 GCATGAGTACAGGATCTGTCAGTA 59.660 45.833 3.65 0.00 41.21 2.74
2578 2728 5.010516 GCATGAGTACAGGATCTGTCAGTAT 59.989 44.000 3.65 0.00 41.21 2.12
2579 2729 6.207614 GCATGAGTACAGGATCTGTCAGTATA 59.792 42.308 3.65 0.00 41.21 1.47
2580 2730 7.093988 GCATGAGTACAGGATCTGTCAGTATAT 60.094 40.741 3.65 0.00 41.21 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.614824 CCCACCTCCCAAGAGCTCT 60.615 63.158 11.45 11.45 38.96 4.09
1 2 0.985490 ATCCCACCTCCCAAGAGCTC 60.985 60.000 5.27 5.27 38.96 4.09
2 3 1.083706 ATCCCACCTCCCAAGAGCT 59.916 57.895 0.00 0.00 38.96 4.09
3 4 1.225704 CATCCCACCTCCCAAGAGC 59.774 63.158 0.00 0.00 38.96 4.09
4 5 1.639635 CCCATCCCACCTCCCAAGAG 61.640 65.000 0.00 0.00 40.09 2.85
5 6 1.619363 CCCATCCCACCTCCCAAGA 60.619 63.158 0.00 0.00 0.00 3.02
6 7 2.693871 CCCCATCCCACCTCCCAAG 61.694 68.421 0.00 0.00 0.00 3.61
7 8 2.616893 CCCCATCCCACCTCCCAA 60.617 66.667 0.00 0.00 0.00 4.12
8 9 4.777546 CCCCCATCCCACCTCCCA 62.778 72.222 0.00 0.00 0.00 4.37
12 13 4.843331 ATCGCCCCCATCCCACCT 62.843 66.667 0.00 0.00 0.00 4.00
13 14 4.586235 CATCGCCCCCATCCCACC 62.586 72.222 0.00 0.00 0.00 4.61
14 15 4.586235 CCATCGCCCCCATCCCAC 62.586 72.222 0.00 0.00 0.00 4.61
15 16 4.833495 TCCATCGCCCCCATCCCA 62.833 66.667 0.00 0.00 0.00 4.37
16 17 3.260100 ATCCATCGCCCCCATCCC 61.260 66.667 0.00 0.00 0.00 3.85
17 18 2.034687 CATCCATCGCCCCCATCC 59.965 66.667 0.00 0.00 0.00 3.51
18 19 1.002868 CTCATCCATCGCCCCCATC 60.003 63.158 0.00 0.00 0.00 3.51
19 20 2.532532 CCTCATCCATCGCCCCCAT 61.533 63.158 0.00 0.00 0.00 4.00
20 21 3.170672 CCTCATCCATCGCCCCCA 61.171 66.667 0.00 0.00 0.00 4.96
21 22 2.849162 TCCTCATCCATCGCCCCC 60.849 66.667 0.00 0.00 0.00 5.40
22 23 2.427753 GTCCTCATCCATCGCCCC 59.572 66.667 0.00 0.00 0.00 5.80
23 24 2.029666 CGTCCTCATCCATCGCCC 59.970 66.667 0.00 0.00 0.00 6.13
24 25 1.006805 CTCGTCCTCATCCATCGCC 60.007 63.158 0.00 0.00 0.00 5.54
25 26 1.006805 CCTCGTCCTCATCCATCGC 60.007 63.158 0.00 0.00 0.00 4.58
26 27 0.312416 GTCCTCGTCCTCATCCATCG 59.688 60.000 0.00 0.00 0.00 3.84
27 28 1.339610 CTGTCCTCGTCCTCATCCATC 59.660 57.143 0.00 0.00 0.00 3.51
28 29 1.407936 CTGTCCTCGTCCTCATCCAT 58.592 55.000 0.00 0.00 0.00 3.41
29 30 1.323271 GCTGTCCTCGTCCTCATCCA 61.323 60.000 0.00 0.00 0.00 3.41
30 31 1.439644 GCTGTCCTCGTCCTCATCC 59.560 63.158 0.00 0.00 0.00 3.51
31 32 1.064946 CGCTGTCCTCGTCCTCATC 59.935 63.158 0.00 0.00 0.00 2.92
32 33 2.418910 CCGCTGTCCTCGTCCTCAT 61.419 63.158 0.00 0.00 0.00 2.90
33 34 3.062466 CCGCTGTCCTCGTCCTCA 61.062 66.667 0.00 0.00 0.00 3.86
34 35 4.500116 GCCGCTGTCCTCGTCCTC 62.500 72.222 0.00 0.00 0.00 3.71
55 56 1.140804 GAGGAGACGAGCAGGAAGC 59.859 63.158 0.00 0.00 46.19 3.86
56 57 0.967887 TGGAGGAGACGAGCAGGAAG 60.968 60.000 0.00 0.00 0.00 3.46
57 58 0.324738 ATGGAGGAGACGAGCAGGAA 60.325 55.000 0.00 0.00 0.00 3.36
58 59 1.039785 CATGGAGGAGACGAGCAGGA 61.040 60.000 0.00 0.00 0.00 3.86
59 60 1.440893 CATGGAGGAGACGAGCAGG 59.559 63.158 0.00 0.00 0.00 4.85
60 61 1.440893 CCATGGAGGAGACGAGCAG 59.559 63.158 5.56 0.00 41.22 4.24
61 62 2.060383 CCCATGGAGGAGACGAGCA 61.060 63.158 15.22 0.00 41.22 4.26
62 63 2.818132 CCCATGGAGGAGACGAGC 59.182 66.667 15.22 0.00 41.22 5.03
63 64 2.818132 GCCCATGGAGGAGACGAG 59.182 66.667 15.22 0.00 41.22 4.18
64 65 3.147595 CGCCCATGGAGGAGACGA 61.148 66.667 15.22 0.00 41.22 4.20
65 66 3.432051 GACGCCCATGGAGGAGACG 62.432 68.421 15.22 9.31 41.22 4.18
66 67 2.359169 TGACGCCCATGGAGGAGAC 61.359 63.158 15.22 0.01 41.22 3.36
67 68 2.038813 TGACGCCCATGGAGGAGA 59.961 61.111 15.22 0.00 41.22 3.71
68 69 2.187946 GTGACGCCCATGGAGGAG 59.812 66.667 15.22 1.13 41.22 3.69
69 70 3.399181 GGTGACGCCCATGGAGGA 61.399 66.667 15.22 0.00 41.22 3.71
70 71 3.687321 CTGGTGACGCCCATGGAGG 62.687 68.421 15.22 6.91 36.04 4.30
71 72 1.976132 ATCTGGTGACGCCCATGGAG 61.976 60.000 15.22 9.61 36.04 3.86
72 73 1.971505 GATCTGGTGACGCCCATGGA 61.972 60.000 15.22 0.00 36.04 3.41
73 74 1.524621 GATCTGGTGACGCCCATGG 60.525 63.158 4.14 4.14 36.04 3.66
74 75 0.531532 GAGATCTGGTGACGCCCATG 60.532 60.000 0.00 0.00 36.04 3.66
75 76 1.690219 GGAGATCTGGTGACGCCCAT 61.690 60.000 0.00 0.00 36.04 4.00
76 77 2.359169 GGAGATCTGGTGACGCCCA 61.359 63.158 0.00 0.00 36.04 5.36
77 78 2.022240 GAGGAGATCTGGTGACGCCC 62.022 65.000 0.00 0.00 36.04 6.13
78 79 1.439644 GAGGAGATCTGGTGACGCC 59.560 63.158 0.00 0.00 37.90 5.68
79 80 1.064946 CGAGGAGATCTGGTGACGC 59.935 63.158 0.00 0.00 0.00 5.19
80 81 1.729470 CCCGAGGAGATCTGGTGACG 61.729 65.000 0.00 0.00 0.00 4.35
81 82 0.684805 ACCCGAGGAGATCTGGTGAC 60.685 60.000 0.00 0.00 43.32 3.67
82 83 1.697910 ACCCGAGGAGATCTGGTGA 59.302 57.895 0.00 0.00 43.32 4.02
83 84 4.364318 ACCCGAGGAGATCTGGTG 57.636 61.111 0.00 0.00 43.32 4.17
84 85 1.381872 CCACCCGAGGAGATCTGGT 60.382 63.158 0.00 0.00 45.65 4.00
85 86 2.801631 GCCACCCGAGGAGATCTGG 61.802 68.421 0.00 0.00 38.24 3.86
86 87 2.818132 GCCACCCGAGGAGATCTG 59.182 66.667 0.00 0.00 0.00 2.90
87 88 2.835431 CGCCACCCGAGGAGATCT 60.835 66.667 0.00 0.00 40.02 2.75
88 89 2.833582 TCGCCACCCGAGGAGATC 60.834 66.667 0.00 0.00 41.89 2.75
96 97 4.803426 GAGCTCTGTCGCCACCCG 62.803 72.222 6.43 0.00 38.61 5.28
97 98 4.459089 GGAGCTCTGTCGCCACCC 62.459 72.222 14.64 0.00 0.00 4.61
98 99 4.459089 GGGAGCTCTGTCGCCACC 62.459 72.222 14.64 0.00 0.00 4.61
99 100 3.386237 AGGGAGCTCTGTCGCCAC 61.386 66.667 14.64 0.00 0.00 5.01
100 101 3.385384 CAGGGAGCTCTGTCGCCA 61.385 66.667 14.64 0.00 0.00 5.69
101 102 4.828925 GCAGGGAGCTCTGTCGCC 62.829 72.222 14.64 5.72 41.15 5.54
110 111 0.818296 TAAGAAGACGAGCAGGGAGC 59.182 55.000 0.00 0.00 46.19 4.70
111 112 3.452474 CATTAAGAAGACGAGCAGGGAG 58.548 50.000 0.00 0.00 0.00 4.30
112 113 2.168521 CCATTAAGAAGACGAGCAGGGA 59.831 50.000 0.00 0.00 0.00 4.20
113 114 2.555199 CCATTAAGAAGACGAGCAGGG 58.445 52.381 0.00 0.00 0.00 4.45
114 115 2.555199 CCCATTAAGAAGACGAGCAGG 58.445 52.381 0.00 0.00 0.00 4.85
115 116 1.936547 GCCCATTAAGAAGACGAGCAG 59.063 52.381 0.00 0.00 0.00 4.24
116 117 1.739035 CGCCCATTAAGAAGACGAGCA 60.739 52.381 0.00 0.00 0.00 4.26
117 118 0.931005 CGCCCATTAAGAAGACGAGC 59.069 55.000 0.00 0.00 0.00 5.03
118 119 1.571919 CCGCCCATTAAGAAGACGAG 58.428 55.000 0.00 0.00 0.00 4.18
119 120 0.461339 GCCGCCCATTAAGAAGACGA 60.461 55.000 0.00 0.00 0.00 4.20
120 121 1.762222 CGCCGCCCATTAAGAAGACG 61.762 60.000 0.00 0.00 0.00 4.18
121 122 1.436983 CCGCCGCCCATTAAGAAGAC 61.437 60.000 0.00 0.00 0.00 3.01
122 123 1.153249 CCGCCGCCCATTAAGAAGA 60.153 57.895 0.00 0.00 0.00 2.87
123 124 2.834618 GCCGCCGCCCATTAAGAAG 61.835 63.158 0.00 0.00 0.00 2.85
124 125 2.826738 GCCGCCGCCCATTAAGAA 60.827 61.111 0.00 0.00 0.00 2.52
127 128 4.779966 TTCGCCGCCGCCCATTAA 62.780 61.111 0.00 0.00 0.00 1.40
135 136 3.330853 GATGTAGCTTCGCCGCCG 61.331 66.667 0.00 0.00 0.00 6.46
136 137 1.951631 GAGATGTAGCTTCGCCGCC 60.952 63.158 0.00 0.00 0.00 6.13
137 138 1.951631 GGAGATGTAGCTTCGCCGC 60.952 63.158 0.00 0.00 0.00 6.53
138 139 0.032678 ATGGAGATGTAGCTTCGCCG 59.967 55.000 0.00 0.00 36.00 6.46
139 140 1.069204 TGATGGAGATGTAGCTTCGCC 59.931 52.381 0.00 0.00 34.05 5.54
140 141 2.515926 TGATGGAGATGTAGCTTCGC 57.484 50.000 0.00 0.00 0.00 4.70
141 142 3.006217 TCCATGATGGAGATGTAGCTTCG 59.994 47.826 10.75 0.00 42.67 3.79
142 143 4.613925 TCCATGATGGAGATGTAGCTTC 57.386 45.455 10.75 0.00 42.67 3.86
155 156 4.375272 GAGATATACCGCCATCCATGATG 58.625 47.826 0.00 0.00 39.52 3.07
156 157 3.389329 GGAGATATACCGCCATCCATGAT 59.611 47.826 0.00 0.00 0.00 2.45
157 158 2.766263 GGAGATATACCGCCATCCATGA 59.234 50.000 0.00 0.00 0.00 3.07
158 159 2.501316 TGGAGATATACCGCCATCCATG 59.499 50.000 0.00 0.00 32.04 3.66
159 160 2.832838 TGGAGATATACCGCCATCCAT 58.167 47.619 0.00 0.00 32.04 3.41
160 161 2.319025 TGGAGATATACCGCCATCCA 57.681 50.000 0.00 0.00 34.54 3.41
161 162 2.766263 TCATGGAGATATACCGCCATCC 59.234 50.000 0.00 0.00 39.01 3.51
162 163 3.739519 GCTCATGGAGATATACCGCCATC 60.740 52.174 0.00 0.00 39.01 3.51
163 164 2.169352 GCTCATGGAGATATACCGCCAT 59.831 50.000 0.00 0.00 41.61 4.40
164 165 1.550524 GCTCATGGAGATATACCGCCA 59.449 52.381 0.00 0.00 34.45 5.69
165 166 1.469940 CGCTCATGGAGATATACCGCC 60.470 57.143 0.00 0.00 0.00 6.13
166 167 1.469940 CCGCTCATGGAGATATACCGC 60.470 57.143 0.00 0.00 0.00 5.68
167 168 1.819288 ACCGCTCATGGAGATATACCG 59.181 52.381 0.00 0.00 0.00 4.02
168 169 2.093973 CCACCGCTCATGGAGATATACC 60.094 54.545 0.00 0.00 39.87 2.73
169 170 2.563179 ACCACCGCTCATGGAGATATAC 59.437 50.000 4.89 0.00 39.87 1.47
170 171 2.889512 ACCACCGCTCATGGAGATATA 58.110 47.619 4.89 0.00 39.87 0.86
171 172 1.722034 ACCACCGCTCATGGAGATAT 58.278 50.000 4.89 0.00 39.87 1.63
172 173 1.412710 GAACCACCGCTCATGGAGATA 59.587 52.381 4.89 0.00 39.87 1.98
173 174 0.179000 GAACCACCGCTCATGGAGAT 59.821 55.000 4.89 0.00 39.87 2.75
174 175 1.191489 TGAACCACCGCTCATGGAGA 61.191 55.000 4.89 0.00 39.87 3.71
175 176 0.321564 TTGAACCACCGCTCATGGAG 60.322 55.000 4.89 0.00 39.87 3.86
176 177 0.605319 GTTGAACCACCGCTCATGGA 60.605 55.000 4.89 0.00 39.87 3.41
177 178 0.606401 AGTTGAACCACCGCTCATGG 60.606 55.000 0.00 0.00 43.43 3.66
178 179 0.798776 GAGTTGAACCACCGCTCATG 59.201 55.000 0.00 0.00 0.00 3.07
179 180 0.321653 GGAGTTGAACCACCGCTCAT 60.322 55.000 0.00 0.00 0.00 2.90
180 181 1.070786 GGAGTTGAACCACCGCTCA 59.929 57.895 0.00 0.00 0.00 4.26
181 182 0.250338 AAGGAGTTGAACCACCGCTC 60.250 55.000 0.00 0.00 0.00 5.03
182 183 0.250338 GAAGGAGTTGAACCACCGCT 60.250 55.000 0.00 0.00 0.00 5.52
183 184 1.235281 GGAAGGAGTTGAACCACCGC 61.235 60.000 0.00 0.00 0.00 5.68
184 185 0.396811 AGGAAGGAGTTGAACCACCG 59.603 55.000 0.00 0.00 33.78 4.94
185 186 2.658807 AAGGAAGGAGTTGAACCACC 57.341 50.000 0.00 0.00 0.00 4.61
195 196 6.816692 CCATGAATGGGCCTAAGGAAGGAG 62.817 54.167 4.53 0.00 45.46 3.69
196 197 5.041460 CCATGAATGGGCCTAAGGAAGGA 62.041 52.174 4.53 0.00 45.46 3.36
197 198 2.754186 CCATGAATGGGCCTAAGGAAGG 60.754 54.545 4.53 0.00 44.31 3.46
198 199 2.590821 CCATGAATGGGCCTAAGGAAG 58.409 52.381 4.53 0.00 44.31 3.46
199 200 2.754012 CCATGAATGGGCCTAAGGAA 57.246 50.000 4.53 0.00 44.31 3.36
210 211 1.610522 GAAGATTCGCCCCCATGAATG 59.389 52.381 0.00 0.00 35.06 2.67
211 212 1.215173 TGAAGATTCGCCCCCATGAAT 59.785 47.619 0.00 0.00 37.52 2.57
212 213 0.623194 TGAAGATTCGCCCCCATGAA 59.377 50.000 0.00 0.00 0.00 2.57
213 214 0.107214 GTGAAGATTCGCCCCCATGA 60.107 55.000 0.00 0.00 0.00 3.07
214 215 0.394216 TGTGAAGATTCGCCCCCATG 60.394 55.000 3.82 0.00 36.89 3.66
215 216 0.331278 TTGTGAAGATTCGCCCCCAT 59.669 50.000 3.82 0.00 36.89 4.00
216 217 0.322456 CTTGTGAAGATTCGCCCCCA 60.322 55.000 3.82 0.00 36.89 4.96
217 218 0.035439 TCTTGTGAAGATTCGCCCCC 60.035 55.000 3.82 0.00 36.89 5.40
218 219 1.066143 TCTCTTGTGAAGATTCGCCCC 60.066 52.381 3.82 0.00 36.82 5.80
219 220 2.386661 TCTCTTGTGAAGATTCGCCC 57.613 50.000 3.82 0.00 36.82 6.13
220 221 3.265791 ACATCTCTTGTGAAGATTCGCC 58.734 45.455 3.82 0.00 37.11 5.54
221 222 4.935885 AACATCTCTTGTGAAGATTCGC 57.064 40.909 0.00 0.00 38.99 4.70
222 223 6.087291 GCAAAAACATCTCTTGTGAAGATTCG 59.913 38.462 0.00 0.00 38.99 3.34
223 224 7.144000 AGCAAAAACATCTCTTGTGAAGATTC 58.856 34.615 0.00 0.00 38.99 2.52
224 225 7.014038 AGAGCAAAAACATCTCTTGTGAAGATT 59.986 33.333 0.00 0.00 38.99 2.40
225 226 6.489361 AGAGCAAAAACATCTCTTGTGAAGAT 59.511 34.615 0.00 0.00 38.99 2.40
226 227 5.824624 AGAGCAAAAACATCTCTTGTGAAGA 59.175 36.000 0.00 0.00 38.99 2.87
227 228 6.069684 AGAGCAAAAACATCTCTTGTGAAG 57.930 37.500 0.00 0.00 38.99 3.02
228 229 5.589855 TGAGAGCAAAAACATCTCTTGTGAA 59.410 36.000 3.39 0.00 40.14 3.18
229 230 5.125356 TGAGAGCAAAAACATCTCTTGTGA 58.875 37.500 3.39 0.00 40.14 3.58
230 231 5.428496 TGAGAGCAAAAACATCTCTTGTG 57.572 39.130 3.39 0.00 40.14 3.33
231 232 6.645790 AATGAGAGCAAAAACATCTCTTGT 57.354 33.333 3.39 0.00 40.14 3.16
232 233 8.509690 TCTTAATGAGAGCAAAAACATCTCTTG 58.490 33.333 3.39 0.00 40.14 3.02
233 234 8.627208 TCTTAATGAGAGCAAAAACATCTCTT 57.373 30.769 3.39 0.00 40.14 2.85
234 235 8.627208 TTCTTAATGAGAGCAAAAACATCTCT 57.373 30.769 3.39 0.00 40.14 3.10
235 236 9.122613 GTTTCTTAATGAGAGCAAAAACATCTC 57.877 33.333 0.00 0.00 39.93 2.75
236 237 8.632679 TGTTTCTTAATGAGAGCAAAAACATCT 58.367 29.630 0.00 0.00 35.37 2.90
237 238 8.801715 TGTTTCTTAATGAGAGCAAAAACATC 57.198 30.769 0.00 0.00 35.37 3.06
238 239 9.199982 CATGTTTCTTAATGAGAGCAAAAACAT 57.800 29.630 0.00 0.00 39.58 2.71
239 240 8.196771 ACATGTTTCTTAATGAGAGCAAAAACA 58.803 29.630 0.00 0.00 35.63 2.83
240 241 8.579682 ACATGTTTCTTAATGAGAGCAAAAAC 57.420 30.769 0.00 0.00 35.37 2.43
241 242 9.033481 CAACATGTTTCTTAATGAGAGCAAAAA 57.967 29.630 8.77 0.00 35.37 1.94
242 243 8.196771 ACAACATGTTTCTTAATGAGAGCAAAA 58.803 29.630 8.77 0.00 35.37 2.44
243 244 7.715657 ACAACATGTTTCTTAATGAGAGCAAA 58.284 30.769 8.77 0.00 35.37 3.68
244 245 7.275888 ACAACATGTTTCTTAATGAGAGCAA 57.724 32.000 8.77 0.00 35.37 3.91
245 246 6.882610 ACAACATGTTTCTTAATGAGAGCA 57.117 33.333 8.77 0.00 35.37 4.26
246 247 9.118236 GTTTACAACATGTTTCTTAATGAGAGC 57.882 33.333 8.77 0.00 35.37 4.09
250 251 9.243637 GCAAGTTTACAACATGTTTCTTAATGA 57.756 29.630 8.77 0.00 32.96 2.57
251 252 9.248291 AGCAAGTTTACAACATGTTTCTTAATG 57.752 29.630 8.77 0.00 32.96 1.90
252 253 9.816354 AAGCAAGTTTACAACATGTTTCTTAAT 57.184 25.926 8.77 0.00 29.61 1.40
253 254 9.296400 GAAGCAAGTTTACAACATGTTTCTTAA 57.704 29.630 8.77 4.30 42.82 1.85
254 255 7.642194 CGAAGCAAGTTTACAACATGTTTCTTA 59.358 33.333 8.77 0.00 43.45 2.10
255 256 6.472163 CGAAGCAAGTTTACAACATGTTTCTT 59.528 34.615 8.77 6.20 43.45 2.52
256 257 5.971202 CGAAGCAAGTTTACAACATGTTTCT 59.029 36.000 8.77 0.00 43.45 2.52
257 258 5.741982 ACGAAGCAAGTTTACAACATGTTTC 59.258 36.000 8.77 9.88 42.75 2.78
258 259 5.646606 ACGAAGCAAGTTTACAACATGTTT 58.353 33.333 8.77 3.54 36.48 2.83
259 260 5.243426 ACGAAGCAAGTTTACAACATGTT 57.757 34.783 4.92 4.92 32.96 2.71
260 261 4.551990 CGACGAAGCAAGTTTACAACATGT 60.552 41.667 0.00 0.00 32.96 3.21
261 262 3.900116 CGACGAAGCAAGTTTACAACATG 59.100 43.478 0.00 0.00 33.50 3.21
262 263 3.606153 GCGACGAAGCAAGTTTACAACAT 60.606 43.478 0.00 0.00 37.05 2.71
263 264 2.285950 GCGACGAAGCAAGTTTACAACA 60.286 45.455 0.00 0.00 37.05 3.33
264 265 2.295696 GCGACGAAGCAAGTTTACAAC 58.704 47.619 0.00 0.00 37.05 3.32
265 266 1.262151 GGCGACGAAGCAAGTTTACAA 59.738 47.619 0.00 0.00 39.27 2.41
266 267 0.863144 GGCGACGAAGCAAGTTTACA 59.137 50.000 0.00 0.00 39.27 2.41
267 268 1.145803 AGGCGACGAAGCAAGTTTAC 58.854 50.000 0.00 0.00 39.27 2.01
268 269 2.602878 CTAGGCGACGAAGCAAGTTTA 58.397 47.619 0.00 0.00 39.27 2.01
269 270 1.429463 CTAGGCGACGAAGCAAGTTT 58.571 50.000 0.00 0.00 39.27 2.66
270 271 1.014564 GCTAGGCGACGAAGCAAGTT 61.015 55.000 13.10 0.00 41.92 2.66
271 272 1.446272 GCTAGGCGACGAAGCAAGT 60.446 57.895 13.10 0.00 41.92 3.16
272 273 0.100682 TAGCTAGGCGACGAAGCAAG 59.899 55.000 19.07 6.65 43.92 4.01
273 274 0.744874 ATAGCTAGGCGACGAAGCAA 59.255 50.000 19.07 0.00 43.92 3.91
274 275 0.311165 GATAGCTAGGCGACGAAGCA 59.689 55.000 19.07 7.20 43.92 3.91
275 276 0.594110 AGATAGCTAGGCGACGAAGC 59.406 55.000 10.36 10.36 42.44 3.86
276 277 4.688511 AATAGATAGCTAGGCGACGAAG 57.311 45.455 0.00 0.00 0.00 3.79
277 278 5.936372 TCTTAATAGATAGCTAGGCGACGAA 59.064 40.000 0.00 0.00 0.00 3.85
278 279 5.350914 GTCTTAATAGATAGCTAGGCGACGA 59.649 44.000 0.00 0.00 31.86 4.20
279 280 5.352016 AGTCTTAATAGATAGCTAGGCGACG 59.648 44.000 0.00 0.00 31.86 5.12
280 281 6.746745 AGTCTTAATAGATAGCTAGGCGAC 57.253 41.667 0.00 0.00 31.86 5.19
281 282 6.151312 CCAAGTCTTAATAGATAGCTAGGCGA 59.849 42.308 0.00 0.00 31.86 5.54
282 283 6.071840 ACCAAGTCTTAATAGATAGCTAGGCG 60.072 42.308 0.00 0.00 31.86 5.52
283 284 7.234661 ACCAAGTCTTAATAGATAGCTAGGC 57.765 40.000 0.00 0.00 31.86 3.93
284 285 8.861086 TCAACCAAGTCTTAATAGATAGCTAGG 58.139 37.037 0.00 0.00 31.86 3.02
285 286 9.906660 CTCAACCAAGTCTTAATAGATAGCTAG 57.093 37.037 0.00 0.00 31.86 3.42
286 287 9.642343 TCTCAACCAAGTCTTAATAGATAGCTA 57.358 33.333 0.00 0.00 31.86 3.32
287 288 8.540507 TCTCAACCAAGTCTTAATAGATAGCT 57.459 34.615 0.00 0.00 31.86 3.32
288 289 9.036671 GTTCTCAACCAAGTCTTAATAGATAGC 57.963 37.037 0.00 0.00 31.86 2.97
292 293 9.529823 TCTAGTTCTCAACCAAGTCTTAATAGA 57.470 33.333 0.00 0.00 0.00 1.98
298 299 8.652290 ACTAATTCTAGTTCTCAACCAAGTCTT 58.348 33.333 0.00 0.00 34.53 3.01
299 300 8.196378 ACTAATTCTAGTTCTCAACCAAGTCT 57.804 34.615 0.00 0.00 34.53 3.24
300 301 7.546316 GGACTAATTCTAGTTCTCAACCAAGTC 59.454 40.741 0.00 0.00 38.55 3.01
301 302 7.235812 AGGACTAATTCTAGTTCTCAACCAAGT 59.764 37.037 0.00 0.00 39.48 3.16
302 303 7.616313 AGGACTAATTCTAGTTCTCAACCAAG 58.384 38.462 0.00 0.00 39.48 3.61
303 304 7.554959 AGGACTAATTCTAGTTCTCAACCAA 57.445 36.000 0.00 0.00 39.48 3.67
310 311 6.747931 AGAAGGGAGGACTAATTCTAGTTCT 58.252 40.000 0.00 0.00 45.37 3.01
311 312 7.426606 AAGAAGGGAGGACTAATTCTAGTTC 57.573 40.000 0.00 0.00 38.55 3.01
312 313 8.912614 TTAAGAAGGGAGGACTAATTCTAGTT 57.087 34.615 0.00 0.00 38.55 2.24
313 314 8.929487 CATTAAGAAGGGAGGACTAATTCTAGT 58.071 37.037 0.00 0.00 41.28 2.57
314 315 8.371699 CCATTAAGAAGGGAGGACTAATTCTAG 58.628 40.741 0.00 0.00 33.14 2.43
315 316 8.263854 CCATTAAGAAGGGAGGACTAATTCTA 57.736 38.462 0.00 0.00 33.14 2.10
331 332 2.026636 CCTTGGTCCGTCCCATTAAGAA 60.027 50.000 0.00 0.00 33.60 2.52
332 333 1.557832 CCTTGGTCCGTCCCATTAAGA 59.442 52.381 0.00 0.00 33.60 2.10
333 334 1.557832 TCCTTGGTCCGTCCCATTAAG 59.442 52.381 0.00 0.00 33.60 1.85
336 338 0.546598 GATCCTTGGTCCGTCCCATT 59.453 55.000 0.00 0.00 33.60 3.16
337 339 1.345715 GGATCCTTGGTCCGTCCCAT 61.346 60.000 3.84 0.00 33.60 4.00
342 344 2.454941 AGGGGATCCTTGGTCCGT 59.545 61.111 12.58 0.00 41.56 4.69
354 356 3.560453 CCATTTCGAAACCTACAAGGGGA 60.560 47.826 13.81 0.00 40.58 4.81
357 359 2.163613 GCCCATTTCGAAACCTACAAGG 59.836 50.000 13.81 7.39 42.49 3.61
358 360 2.163613 GGCCCATTTCGAAACCTACAAG 59.836 50.000 13.81 0.00 0.00 3.16
363 365 0.178975 TGTGGCCCATTTCGAAACCT 60.179 50.000 13.81 0.00 0.00 3.50
368 370 1.462616 CTTGATGTGGCCCATTTCGA 58.537 50.000 0.00 0.00 32.56 3.71
370 372 0.179129 CGCTTGATGTGGCCCATTTC 60.179 55.000 0.00 0.00 32.56 2.17
388 390 0.445829 TGTTTATGCGTCATGTGCCG 59.554 50.000 9.60 4.46 0.00 5.69
392 394 4.465632 TCCTACTGTTTATGCGTCATGT 57.534 40.909 0.00 0.00 0.00 3.21
425 427 2.314647 GCTTCTTGGCGTGCACGTA 61.315 57.895 36.80 24.74 42.22 3.57
426 428 3.649986 GCTTCTTGGCGTGCACGT 61.650 61.111 36.80 0.00 42.22 4.49
428 430 1.234615 TTAGGCTTCTTGGCGTGCAC 61.235 55.000 6.82 6.82 46.88 4.57
434 436 3.258123 TCCACAAAATTAGGCTTCTTGGC 59.742 43.478 0.00 0.00 42.15 4.52
446 448 7.069826 TGAGGAAACTGAATCTTCCACAAAATT 59.930 33.333 3.83 0.00 44.43 1.82
451 453 4.705110 TGAGGAAACTGAATCTTCCACA 57.295 40.909 3.83 0.80 44.43 4.17
475 477 1.624336 ACAACACCTAGTCGGCTACA 58.376 50.000 0.00 0.00 35.61 2.74
481 483 3.428589 GCTAGGGTTACAACACCTAGTCG 60.429 52.174 23.33 10.92 43.88 4.18
520 523 1.771255 CATCTACAAGCCTAGCCCCTT 59.229 52.381 0.00 0.00 0.00 3.95
524 527 3.543680 TTGTCATCTACAAGCCTAGCC 57.456 47.619 0.00 0.00 43.22 3.93
544 556 6.976934 AGTGTCAACCCAAAGAATGTAATT 57.023 33.333 0.00 0.00 40.93 1.40
551 563 2.165437 GTGCAAGTGTCAACCCAAAGAA 59.835 45.455 0.00 0.00 0.00 2.52
561 573 7.115805 CGAAGTAAGTATAAAGTGCAAGTGTCA 59.884 37.037 0.00 0.00 0.00 3.58
567 579 6.366877 GGTGTCGAAGTAAGTATAAAGTGCAA 59.633 38.462 0.00 0.00 0.00 4.08
574 586 9.357652 GTGTTTATGGTGTCGAAGTAAGTATAA 57.642 33.333 0.00 0.00 0.00 0.98
576 588 7.380536 TGTGTTTATGGTGTCGAAGTAAGTAT 58.619 34.615 0.00 0.00 0.00 2.12
585 597 2.805671 CTGCTTGTGTTTATGGTGTCGA 59.194 45.455 0.00 0.00 0.00 4.20
586 598 2.095768 CCTGCTTGTGTTTATGGTGTCG 60.096 50.000 0.00 0.00 0.00 4.35
592 604 4.201812 CCATACGTCCTGCTTGTGTTTATG 60.202 45.833 0.00 0.00 0.00 1.90
615 627 4.762765 TCGGGCTCTCTGAGAAGATAATAC 59.237 45.833 8.95 0.00 0.00 1.89
651 663 4.703897 CATAATGATACCAAGGACACGGT 58.296 43.478 0.00 0.00 39.41 4.83
652 664 3.498397 GCATAATGATACCAAGGACACGG 59.502 47.826 0.00 0.00 0.00 4.94
660 672 5.853936 AGCGTCTAAGCATAATGATACCAA 58.146 37.500 0.00 0.00 40.15 3.67
666 678 5.201713 AGCTAAGCGTCTAAGCATAATGA 57.798 39.130 0.00 0.00 38.75 2.57
670 682 3.383505 TCCAAGCTAAGCGTCTAAGCATA 59.616 43.478 0.00 0.00 38.75 3.14
745 757 3.733960 CGAGTGACGACGGGCAGA 61.734 66.667 0.00 0.00 45.77 4.26
762 774 4.576463 AGTTTGTGTTCCTGACTGATGTTC 59.424 41.667 0.00 0.00 0.00 3.18
779 791 4.539509 TTCGCGAATACACAAAGTTTGT 57.460 36.364 19.38 15.58 46.75 2.83
805 817 9.182214 AGAACATAAATGTGATACAAGCTGATT 57.818 29.630 0.00 0.00 41.61 2.57
812 824 9.500785 TGAAGTGAGAACATAAATGTGATACAA 57.499 29.630 0.00 0.00 41.61 2.41
817 831 8.450578 AAGTTGAAGTGAGAACATAAATGTGA 57.549 30.769 0.00 0.00 41.61 3.58
848 865 7.315890 TGCGTATCTTTCATCACTGATATAGG 58.684 38.462 0.00 0.00 0.00 2.57
849 866 8.748380 TTGCGTATCTTTCATCACTGATATAG 57.252 34.615 0.00 0.00 0.00 1.31
850 867 8.978539 GTTTGCGTATCTTTCATCACTGATATA 58.021 33.333 0.00 0.00 0.00 0.86
851 868 7.712639 AGTTTGCGTATCTTTCATCACTGATAT 59.287 33.333 0.00 0.00 0.00 1.63
852 869 7.041721 AGTTTGCGTATCTTTCATCACTGATA 58.958 34.615 0.00 0.00 0.00 2.15
854 871 5.237815 AGTTTGCGTATCTTTCATCACTGA 58.762 37.500 0.00 0.00 0.00 3.41
855 872 5.536554 AGTTTGCGTATCTTTCATCACTG 57.463 39.130 0.00 0.00 0.00 3.66
856 873 6.017109 ACAAAGTTTGCGTATCTTTCATCACT 60.017 34.615 15.59 0.00 30.41 3.41
857 874 6.086765 CACAAAGTTTGCGTATCTTTCATCAC 59.913 38.462 15.59 0.00 30.41 3.06
858 875 6.142139 CACAAAGTTTGCGTATCTTTCATCA 58.858 36.000 15.59 0.00 30.41 3.07
859 876 6.142817 ACACAAAGTTTGCGTATCTTTCATC 58.857 36.000 15.59 0.00 30.41 2.92
860 877 6.072112 ACACAAAGTTTGCGTATCTTTCAT 57.928 33.333 15.59 0.00 30.41 2.57
911 949 3.302699 CGAAAGCGTACTTACTTAGTGCC 59.697 47.826 0.00 0.00 37.73 5.01
970 1015 3.114616 CGGCCGCTCACTTCTGTG 61.115 66.667 14.67 0.00 45.07 3.66
1013 1058 0.673644 CGCCGAAGATTTGGTCTGGT 60.674 55.000 0.87 0.00 37.23 4.00
1015 1060 1.002366 CTCGCCGAAGATTTGGTCTG 58.998 55.000 0.87 0.00 37.23 3.51
1016 1061 0.741221 GCTCGCCGAAGATTTGGTCT 60.741 55.000 0.87 0.00 39.43 3.85
1017 1062 1.706287 GGCTCGCCGAAGATTTGGTC 61.706 60.000 0.87 0.00 34.01 4.02
1018 1063 1.745489 GGCTCGCCGAAGATTTGGT 60.745 57.895 0.87 0.00 34.01 3.67
1020 1065 1.097547 ATGGGCTCGCCGAAGATTTG 61.098 55.000 1.24 0.00 36.85 2.32
1021 1066 0.815615 GATGGGCTCGCCGAAGATTT 60.816 55.000 1.24 0.00 36.85 2.17
1096 1141 1.344953 ATGCCGCCACCCATCTTCTA 61.345 55.000 0.00 0.00 0.00 2.10
1295 1340 1.646189 GGGAACAGAGAACGAGATGC 58.354 55.000 0.00 0.00 0.00 3.91
1309 1354 2.275134 TGTTTTAGGGTTCGGGGAAC 57.725 50.000 0.00 0.00 41.32 3.62
1313 1358 3.192633 CCAGATTTGTTTTAGGGTTCGGG 59.807 47.826 0.00 0.00 0.00 5.14
1316 1361 3.366985 CGCCCAGATTTGTTTTAGGGTTC 60.367 47.826 0.00 0.00 38.56 3.62
1338 1383 1.067635 GCATCCATTCCAACCACACAC 60.068 52.381 0.00 0.00 0.00 3.82
1339 1384 1.255882 GCATCCATTCCAACCACACA 58.744 50.000 0.00 0.00 0.00 3.72
1535 1583 8.432110 ACATCTTATTTAACACATATCGCACA 57.568 30.769 0.00 0.00 0.00 4.57
1576 1624 2.555325 TCTCAGGTTTCAGCAATTGCAG 59.445 45.455 30.89 23.69 45.16 4.41
1639 1687 9.199982 CCATTTGATCCAAGCATAAATAACATC 57.800 33.333 0.00 0.00 0.00 3.06
1697 1747 7.380536 AGCACACAAACATGATTGATATTGTT 58.619 30.769 21.13 7.99 33.93 2.83
1806 1911 2.674796 AGAACTCCCAATACACTCGC 57.325 50.000 0.00 0.00 0.00 5.03
1855 1982 4.861210 AGAACTTCGAGCGTATATGAAGG 58.139 43.478 5.88 0.00 41.58 3.46
1866 1993 6.229561 ACACAGATAAAAAGAACTTCGAGC 57.770 37.500 0.00 0.00 0.00 5.03
1878 2005 6.649141 ACTGCGACTAATGAACACAGATAAAA 59.351 34.615 0.00 0.00 0.00 1.52
1879 2006 6.090763 CACTGCGACTAATGAACACAGATAAA 59.909 38.462 0.00 0.00 0.00 1.40
1898 2025 5.812642 AGATAAAAACTGATAGGACACTGCG 59.187 40.000 0.00 0.00 0.00 5.18
1926 2053 2.095461 GGATCCAAAACCAGAAGAGGC 58.905 52.381 6.95 0.00 0.00 4.70
1941 2068 2.978156 TAATGCCTTCATGGGGATCC 57.022 50.000 1.92 1.92 36.40 3.36
1943 2070 6.384603 AGTAAATTAATGCCTTCATGGGGAT 58.615 36.000 9.32 0.00 39.10 3.85
1963 2090 6.992123 TCAGTATAGATAACGGTCGGAAGTAA 59.008 38.462 0.00 0.00 0.00 2.24
2040 2169 1.351017 TGGGAACTACTTTGGGCAGAG 59.649 52.381 0.00 0.00 0.00 3.35
2043 2172 1.145571 ACTGGGAACTACTTTGGGCA 58.854 50.000 0.00 0.00 0.00 5.36
2048 2184 6.649557 CAGTCGAATAAACTGGGAACTACTTT 59.350 38.462 0.00 0.00 40.36 2.66
2078 2214 7.144661 CCAAACATAAAGCACATACACAGAAA 58.855 34.615 0.00 0.00 0.00 2.52
2090 2226 1.617850 CTGTGGCCCAAACATAAAGCA 59.382 47.619 0.00 0.00 0.00 3.91
2132 2273 6.922957 ACAAGCAAAACTGTAAATACACCATG 59.077 34.615 0.00 0.00 31.93 3.66
2133 2274 7.049799 ACAAGCAAAACTGTAAATACACCAT 57.950 32.000 0.00 0.00 31.93 3.55
2141 2282 5.548706 ACACGTACAAGCAAAACTGTAAA 57.451 34.783 0.00 0.00 0.00 2.01
2196 2337 4.621068 ATGTCGTGAAATTGGCACATAG 57.379 40.909 11.02 0.00 39.30 2.23
2213 2354 8.986847 CAGATAGGTTCATCTGTATTGAATGTC 58.013 37.037 5.18 0.00 44.59 3.06
2268 2410 9.031537 TGAAATACATCTACCTACTGTTCAAGA 57.968 33.333 0.00 0.00 0.00 3.02
2271 2413 8.251026 CACTGAAATACATCTACCTACTGTTCA 58.749 37.037 0.00 0.00 0.00 3.18
2335 2477 8.055279 TCTAGAAAGCATACCAGGAAAAATTG 57.945 34.615 0.00 0.00 0.00 2.32
2386 2535 0.593128 AGCAACGAGTTTGACATGCC 59.407 50.000 0.00 0.00 37.39 4.40
2473 2623 6.814954 ATGTCCATCCTTAGTGTTGATACT 57.185 37.500 0.00 0.00 34.71 2.12
2487 2637 6.599244 TGAAGACAACTGATTAATGTCCATCC 59.401 38.462 0.00 0.00 43.46 3.51
2492 2642 9.979270 CATAAGTGAAGACAACTGATTAATGTC 57.021 33.333 0.00 0.00 42.91 3.06
2496 2646 7.977789 TGCATAAGTGAAGACAACTGATTAA 57.022 32.000 0.00 0.00 0.00 1.40
2506 2656 5.824904 ATGTTCCATGCATAAGTGAAGAC 57.175 39.130 0.00 0.00 0.00 3.01
2510 2660 6.015603 TGTTGAAATGTTCCATGCATAAGTGA 60.016 34.615 0.00 0.00 0.00 3.41
2512 2662 6.343716 TGTTGAAATGTTCCATGCATAAGT 57.656 33.333 0.00 0.00 0.00 2.24
2518 2668 6.446318 TCTAGTTTGTTGAAATGTTCCATGC 58.554 36.000 0.00 0.00 0.00 4.06
2554 2704 3.131933 ACTGACAGATCCTGTACTCATGC 59.868 47.826 10.08 0.00 45.44 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.