Multiple sequence alignment - TraesCS3A01G290200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G290200 chr3A 100.000 4333 0 0 1 4333 519211206 519206874 0.000000e+00 8002.0
1 TraesCS3A01G290200 chr3A 97.832 369 4 3 1 367 190901763 190902129 6.110000e-178 634.0
2 TraesCS3A01G290200 chr3A 89.091 55 6 0 1001 1055 142896670 142896724 7.780000e-08 69.4
3 TraesCS3A01G290200 chr3B 92.244 2411 103 29 1595 3979 525831887 525829535 0.000000e+00 3339.0
4 TraesCS3A01G290200 chr3B 95.577 814 18 7 761 1572 525832960 525832163 0.000000e+00 1288.0
5 TraesCS3A01G290200 chr3B 84.615 403 45 7 365 762 525970765 525970375 6.800000e-103 385.0
6 TraesCS3A01G290200 chr3B 87.755 147 5 5 229 366 171509149 171509007 4.490000e-35 159.0
7 TraesCS3A01G290200 chr3B 90.909 55 5 0 1001 1055 187352153 187352207 1.670000e-09 75.0
8 TraesCS3A01G290200 chr3D 95.723 1590 60 5 1613 3198 400276383 400274798 0.000000e+00 2553.0
9 TraesCS3A01G290200 chr3D 92.112 1217 40 17 365 1572 400278052 400276883 0.000000e+00 1664.0
10 TraesCS3A01G290200 chr3D 93.593 796 26 8 3197 3979 400274557 400273774 0.000000e+00 1164.0
11 TraesCS3A01G290200 chr3D 89.091 55 6 0 1001 1055 130933092 130933146 7.780000e-08 69.4
12 TraesCS3A01G290200 chr5D 87.863 379 32 10 1 366 176001417 176001794 2.390000e-117 433.0
13 TraesCS3A01G290200 chr5D 84.350 377 32 11 1 364 172015226 172014864 1.150000e-90 344.0
14 TraesCS3A01G290200 chr5A 86.877 381 22 11 1 366 141419819 141419452 6.750000e-108 401.0
15 TraesCS3A01G290200 chr1B 78.276 580 95 24 2387 2944 580633847 580634417 1.150000e-90 344.0
16 TraesCS3A01G290200 chr1B 74.573 527 102 30 903 1413 580631820 580632330 7.350000e-48 202.0
17 TraesCS3A01G290200 chr1B 87.500 152 5 6 229 370 152316715 152316568 3.470000e-36 163.0
18 TraesCS3A01G290200 chr1B 87.755 147 5 5 229 366 170293901 170293759 4.490000e-35 159.0
19 TraesCS3A01G290200 chr1B 95.918 49 2 0 318 366 168735921 168735873 3.590000e-11 80.5
20 TraesCS3A01G290200 chr1D 78.045 583 95 24 2387 2945 429698535 429699108 1.930000e-88 337.0
21 TraesCS3A01G290200 chr1D 88.971 136 15 0 1278 1413 429696895 429697030 7.450000e-38 169.0
22 TraesCS3A01G290200 chr1D 78.537 205 32 11 992 1193 429696443 429696638 1.640000e-24 124.0
23 TraesCS3A01G290200 chr1A 77.797 581 99 24 2387 2945 527177283 527177855 8.980000e-87 331.0
24 TraesCS3A01G290200 chr1A 89.583 144 14 1 1271 1413 527175253 527175396 9.570000e-42 182.0
25 TraesCS3A01G290200 chr1A 96.875 64 2 0 992 1055 527174608 527174671 1.650000e-19 108.0
26 TraesCS3A01G290200 chr1A 86.567 67 7 2 1128 1194 527175103 527175167 6.010000e-09 73.1
27 TraesCS3A01G290200 chr2B 85.666 293 32 5 3980 4263 37675528 37675237 2.530000e-77 300.0
28 TraesCS3A01G290200 chr5B 87.075 147 6 5 229 366 304510177 304510035 2.090000e-33 154.0
29 TraesCS3A01G290200 chr5B 85.034 147 9 6 229 366 288481005 288480863 2.100000e-28 137.0
30 TraesCS3A01G290200 chr5B 88.060 67 7 1 4056 4121 508684172 508684238 1.290000e-10 78.7
31 TraesCS3A01G290200 chr7B 87.356 87 7 4 4061 4145 79374123 79374207 3.570000e-16 97.1
32 TraesCS3A01G290200 chr2A 84.416 77 10 2 4056 4131 433362890 433362965 1.670000e-09 75.0
33 TraesCS3A01G290200 chr6A 85.714 70 5 4 299 366 617995785 617995851 7.780000e-08 69.4
34 TraesCS3A01G290200 chr7D 85.965 57 6 2 4083 4138 597067002 597067057 4.680000e-05 60.2
35 TraesCS3A01G290200 chr4B 79.787 94 10 8 4054 4142 561592911 561593000 4.680000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G290200 chr3A 519206874 519211206 4332 True 8002.000000 8002 100.000000 1 4333 1 chr3A.!!$R1 4332
1 TraesCS3A01G290200 chr3B 525829535 525832960 3425 True 2313.500000 3339 93.910500 761 3979 2 chr3B.!!$R3 3218
2 TraesCS3A01G290200 chr3D 400273774 400278052 4278 True 1793.666667 2553 93.809333 365 3979 3 chr3D.!!$R1 3614
3 TraesCS3A01G290200 chr1B 580631820 580634417 2597 False 273.000000 344 76.424500 903 2944 2 chr1B.!!$F1 2041
4 TraesCS3A01G290200 chr1D 429696443 429699108 2665 False 210.000000 337 81.851000 992 2945 3 chr1D.!!$F1 1953

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 347 0.248621 AAATCTAGCCGCGCAAATGC 60.249 50.000 8.75 3.9 37.78 3.56 F
569 570 0.525311 CGGCACACCATTAACATGCA 59.475 50.000 0.00 0.0 38.05 3.96 F
1257 1264 1.001181 CCCCTTTTTGTCGAGGTCGTA 59.999 52.381 0.00 0.0 40.80 3.43 F
1413 1592 1.484240 GGCTCTTCACTCTGCAGGTAT 59.516 52.381 15.13 0.0 0.00 2.73 F
2870 4217 2.275318 GAGACATCTGCGAAAGAAGGG 58.725 52.381 0.00 0.0 38.79 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1391 1570 1.189752 CCTGCAGAGTGAAGAGCCTA 58.810 55.000 17.39 0.00 0.00 3.93 R
1997 3300 1.536284 GGTCACTACGCTGATAGGCAC 60.536 57.143 0.00 0.00 0.00 5.01 R
3132 4482 2.771943 CAATCCCTCACACCCTAGCTAA 59.228 50.000 0.00 0.00 0.00 3.09 R
3329 4923 1.825191 ATGGCGTGGCATGGCTTAG 60.825 57.895 30.03 12.17 0.00 2.18 R
4307 5932 0.108329 TCCTCGATTTGGACGAAGCC 60.108 55.000 0.00 0.00 39.23 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 9.443323 TGGAAGTTTGAGTCAATAAATATTCGA 57.557 29.630 6.36 0.78 0.00 3.71
189 190 8.579850 AATTCATTACAAGCATAGGTCTTTCA 57.420 30.769 0.00 0.00 0.00 2.69
190 191 7.615582 TTCATTACAAGCATAGGTCTTTCAG 57.384 36.000 0.00 0.00 0.00 3.02
191 192 6.711277 TCATTACAAGCATAGGTCTTTCAGT 58.289 36.000 0.00 0.00 0.00 3.41
192 193 7.847096 TCATTACAAGCATAGGTCTTTCAGTA 58.153 34.615 0.00 0.00 0.00 2.74
193 194 8.486210 TCATTACAAGCATAGGTCTTTCAGTAT 58.514 33.333 0.00 0.00 0.00 2.12
194 195 9.113838 CATTACAAGCATAGGTCTTTCAGTATT 57.886 33.333 0.00 0.00 0.00 1.89
195 196 6.992063 ACAAGCATAGGTCTTTCAGTATTG 57.008 37.500 0.00 0.00 0.00 1.90
196 197 5.355350 ACAAGCATAGGTCTTTCAGTATTGC 59.645 40.000 0.00 0.00 0.00 3.56
197 198 5.365021 AGCATAGGTCTTTCAGTATTGCT 57.635 39.130 0.00 0.00 0.00 3.91
198 199 5.363939 AGCATAGGTCTTTCAGTATTGCTC 58.636 41.667 0.00 0.00 0.00 4.26
199 200 5.130145 AGCATAGGTCTTTCAGTATTGCTCT 59.870 40.000 0.00 0.00 0.00 4.09
200 201 5.236047 GCATAGGTCTTTCAGTATTGCTCTG 59.764 44.000 0.00 0.00 0.00 3.35
201 202 6.577103 CATAGGTCTTTCAGTATTGCTCTGA 58.423 40.000 0.00 0.00 39.71 3.27
202 203 4.826556 AGGTCTTTCAGTATTGCTCTGAC 58.173 43.478 0.00 0.00 40.90 3.51
203 204 4.530161 AGGTCTTTCAGTATTGCTCTGACT 59.470 41.667 0.00 0.00 40.90 3.41
204 205 4.629200 GGTCTTTCAGTATTGCTCTGACTG 59.371 45.833 0.00 0.00 40.90 3.51
205 206 5.473931 GTCTTTCAGTATTGCTCTGACTGA 58.526 41.667 0.00 0.00 45.97 3.41
206 207 6.105333 GTCTTTCAGTATTGCTCTGACTGAT 58.895 40.000 4.90 0.00 46.63 2.90
207 208 6.593382 GTCTTTCAGTATTGCTCTGACTGATT 59.407 38.462 4.90 0.00 46.63 2.57
208 209 7.761704 GTCTTTCAGTATTGCTCTGACTGATTA 59.238 37.037 4.90 0.00 46.63 1.75
209 210 8.481314 TCTTTCAGTATTGCTCTGACTGATTAT 58.519 33.333 4.90 0.00 46.63 1.28
210 211 9.755804 CTTTCAGTATTGCTCTGACTGATTATA 57.244 33.333 4.90 0.00 46.63 0.98
211 212 9.755804 TTTCAGTATTGCTCTGACTGATTATAG 57.244 33.333 4.90 0.00 46.63 1.31
212 213 7.374272 TCAGTATTGCTCTGACTGATTATAGC 58.626 38.462 0.00 0.00 43.52 2.97
213 214 7.014615 TCAGTATTGCTCTGACTGATTATAGCA 59.985 37.037 0.00 0.00 43.52 3.49
216 217 6.856135 TTGCTCTGACTGATTATAGCAATG 57.144 37.500 0.00 0.00 43.03 2.82
217 218 5.922053 TGCTCTGACTGATTATAGCAATGT 58.078 37.500 0.00 0.00 37.05 2.71
218 219 7.054491 TGCTCTGACTGATTATAGCAATGTA 57.946 36.000 0.00 0.00 37.05 2.29
219 220 7.150640 TGCTCTGACTGATTATAGCAATGTAG 58.849 38.462 0.00 0.00 37.05 2.74
220 221 7.151308 GCTCTGACTGATTATAGCAATGTAGT 58.849 38.462 0.00 0.00 0.00 2.73
221 222 7.328249 GCTCTGACTGATTATAGCAATGTAGTC 59.672 40.741 0.00 0.00 35.20 2.59
222 223 8.237811 TCTGACTGATTATAGCAATGTAGTCA 57.762 34.615 0.00 0.00 40.43 3.41
223 224 8.695456 TCTGACTGATTATAGCAATGTAGTCAA 58.305 33.333 0.00 0.00 41.63 3.18
224 225 9.317936 CTGACTGATTATAGCAATGTAGTCAAA 57.682 33.333 0.00 0.00 41.63 2.69
225 226 9.098355 TGACTGATTATAGCAATGTAGTCAAAC 57.902 33.333 0.00 0.00 39.96 2.93
226 227 8.131455 ACTGATTATAGCAATGTAGTCAAACG 57.869 34.615 0.00 0.00 0.00 3.60
227 228 7.979537 ACTGATTATAGCAATGTAGTCAAACGA 59.020 33.333 0.00 0.00 0.00 3.85
228 229 8.126871 TGATTATAGCAATGTAGTCAAACGAC 57.873 34.615 0.00 0.00 0.00 4.34
229 230 7.762159 TGATTATAGCAATGTAGTCAAACGACA 59.238 33.333 0.00 0.00 38.07 4.35
230 231 8.662781 ATTATAGCAATGTAGTCAAACGACAT 57.337 30.769 0.00 0.71 44.43 3.06
231 232 4.928661 AGCAATGTAGTCAAACGACATC 57.071 40.909 6.34 0.00 42.29 3.06
232 233 4.314961 AGCAATGTAGTCAAACGACATCA 58.685 39.130 6.34 0.00 42.29 3.07
233 234 4.754618 AGCAATGTAGTCAAACGACATCAA 59.245 37.500 6.34 0.00 42.29 2.57
234 235 5.238432 AGCAATGTAGTCAAACGACATCAAA 59.762 36.000 6.34 0.00 42.29 2.69
235 236 5.565259 GCAATGTAGTCAAACGACATCAAAG 59.435 40.000 6.34 0.73 42.29 2.77
236 237 5.862924 ATGTAGTCAAACGACATCAAAGG 57.137 39.130 0.00 0.00 39.68 3.11
237 238 4.951254 TGTAGTCAAACGACATCAAAGGA 58.049 39.130 0.00 0.00 35.75 3.36
238 239 4.748102 TGTAGTCAAACGACATCAAAGGAC 59.252 41.667 0.00 0.00 35.75 3.85
239 240 3.804036 AGTCAAACGACATCAAAGGACA 58.196 40.909 0.00 0.00 35.75 4.02
240 241 4.196193 AGTCAAACGACATCAAAGGACAA 58.804 39.130 0.00 0.00 35.75 3.18
241 242 4.638421 AGTCAAACGACATCAAAGGACAAA 59.362 37.500 0.00 0.00 35.75 2.83
242 243 5.124776 AGTCAAACGACATCAAAGGACAAAA 59.875 36.000 0.00 0.00 35.75 2.44
243 244 5.977129 GTCAAACGACATCAAAGGACAAAAT 59.023 36.000 0.00 0.00 33.34 1.82
244 245 7.012894 AGTCAAACGACATCAAAGGACAAAATA 59.987 33.333 0.00 0.00 35.75 1.40
245 246 7.646130 GTCAAACGACATCAAAGGACAAAATAA 59.354 33.333 0.00 0.00 33.34 1.40
246 247 8.191446 TCAAACGACATCAAAGGACAAAATAAA 58.809 29.630 0.00 0.00 0.00 1.40
247 248 8.977505 CAAACGACATCAAAGGACAAAATAAAT 58.022 29.630 0.00 0.00 0.00 1.40
248 249 8.519492 AACGACATCAAAGGACAAAATAAATG 57.481 30.769 0.00 0.00 0.00 2.32
249 250 7.090173 ACGACATCAAAGGACAAAATAAATGG 58.910 34.615 0.00 0.00 0.00 3.16
250 251 7.040062 ACGACATCAAAGGACAAAATAAATGGA 60.040 33.333 0.00 0.00 0.00 3.41
251 252 7.812191 CGACATCAAAGGACAAAATAAATGGAA 59.188 33.333 0.00 0.00 0.00 3.53
252 253 9.487790 GACATCAAAGGACAAAATAAATGGAAA 57.512 29.630 0.00 0.00 0.00 3.13
253 254 9.844257 ACATCAAAGGACAAAATAAATGGAAAA 57.156 25.926 0.00 0.00 0.00 2.29
255 256 8.900983 TCAAAGGACAAAATAAATGGAAAAGG 57.099 30.769 0.00 0.00 0.00 3.11
256 257 8.709308 TCAAAGGACAAAATAAATGGAAAAGGA 58.291 29.630 0.00 0.00 0.00 3.36
257 258 9.336171 CAAAGGACAAAATAAATGGAAAAGGAA 57.664 29.630 0.00 0.00 0.00 3.36
259 260 9.506018 AAGGACAAAATAAATGGAAAAGGAATG 57.494 29.630 0.00 0.00 0.00 2.67
260 261 8.879227 AGGACAAAATAAATGGAAAAGGAATGA 58.121 29.630 0.00 0.00 0.00 2.57
261 262 9.500785 GGACAAAATAAATGGAAAAGGAATGAA 57.499 29.630 0.00 0.00 0.00 2.57
271 272 7.886629 TGGAAAAGGAATGAAGAATAGATGG 57.113 36.000 0.00 0.00 0.00 3.51
272 273 7.642186 TGGAAAAGGAATGAAGAATAGATGGA 58.358 34.615 0.00 0.00 0.00 3.41
273 274 7.776969 TGGAAAAGGAATGAAGAATAGATGGAG 59.223 37.037 0.00 0.00 0.00 3.86
274 275 7.995488 GGAAAAGGAATGAAGAATAGATGGAGA 59.005 37.037 0.00 0.00 0.00 3.71
275 276 9.571816 GAAAAGGAATGAAGAATAGATGGAGAT 57.428 33.333 0.00 0.00 0.00 2.75
278 279 8.733092 AGGAATGAAGAATAGATGGAGATACA 57.267 34.615 0.00 0.00 0.00 2.29
279 280 9.163894 AGGAATGAAGAATAGATGGAGATACAA 57.836 33.333 0.00 0.00 0.00 2.41
280 281 9.784531 GGAATGAAGAATAGATGGAGATACAAA 57.215 33.333 0.00 0.00 0.00 2.83
338 339 8.342634 TGAATAAAACTATCAAAATCTAGCCGC 58.657 33.333 0.00 0.00 0.00 6.53
339 340 4.795970 AAACTATCAAAATCTAGCCGCG 57.204 40.909 0.00 0.00 0.00 6.46
340 341 2.135933 ACTATCAAAATCTAGCCGCGC 58.864 47.619 0.00 0.00 0.00 6.86
341 342 2.135139 CTATCAAAATCTAGCCGCGCA 58.865 47.619 8.75 0.00 0.00 6.09
342 343 1.378531 ATCAAAATCTAGCCGCGCAA 58.621 45.000 8.75 0.00 0.00 4.85
343 344 1.160989 TCAAAATCTAGCCGCGCAAA 58.839 45.000 8.75 0.00 0.00 3.68
344 345 1.742831 TCAAAATCTAGCCGCGCAAAT 59.257 42.857 8.75 0.00 0.00 2.32
345 346 1.847999 CAAAATCTAGCCGCGCAAATG 59.152 47.619 8.75 0.00 0.00 2.32
346 347 0.248621 AAATCTAGCCGCGCAAATGC 60.249 50.000 8.75 3.90 37.78 3.56
377 378 1.738350 CCGCTAGTTCTCTTGACTCGA 59.262 52.381 0.00 0.00 0.00 4.04
397 398 3.381590 CGAGAAGACATCCAGGTGTGATA 59.618 47.826 0.00 0.00 31.16 2.15
399 400 5.452496 CGAGAAGACATCCAGGTGTGATAAT 60.452 44.000 0.00 0.00 31.16 1.28
404 405 5.070180 AGACATCCAGGTGTGATAATCTCAG 59.930 44.000 0.00 0.00 33.51 3.35
408 409 3.525537 CAGGTGTGATAATCTCAGCGTT 58.474 45.455 0.00 0.00 41.53 4.84
435 436 3.196469 TCTTCTTGTCTGATCCGCTGATT 59.804 43.478 0.00 0.00 0.00 2.57
442 443 1.139654 CTGATCCGCTGATTCTTGGGA 59.860 52.381 0.00 0.00 0.00 4.37
458 459 5.867330 TCTTGGGAATTAACTTAACCGACA 58.133 37.500 0.00 0.00 0.00 4.35
507 508 1.108776 TGCCCGTGTGGATACTACTC 58.891 55.000 0.00 0.00 37.49 2.59
537 538 2.654912 CGACAACGCGGAACTCCAC 61.655 63.158 12.47 0.00 35.14 4.02
541 542 2.803817 AACGCGGAACTCCACCAGT 61.804 57.895 12.47 0.00 36.64 4.00
552 553 2.260869 CCACCAGTGGCAACTTCGG 61.261 63.158 9.78 0.00 44.73 4.30
569 570 0.525311 CGGCACACCATTAACATGCA 59.475 50.000 0.00 0.00 38.05 3.96
570 571 1.134753 CGGCACACCATTAACATGCAT 59.865 47.619 0.00 0.00 38.05 3.96
593 594 7.393796 GCATGGGATGAAGAGAATGATAGATTT 59.606 37.037 0.00 0.00 0.00 2.17
766 767 5.939883 CACCAATCATCAGACTCCAAAACTA 59.060 40.000 0.00 0.00 0.00 2.24
1090 1097 1.007479 TCCCGTCCTCCTTTTAGGCTA 59.993 52.381 0.00 0.00 36.51 3.93
1095 1102 2.872858 GTCCTCCTTTTAGGCTATTGCG 59.127 50.000 0.00 0.00 40.82 4.85
1098 1105 3.181458 CCTCCTTTTAGGCTATTGCGGTA 60.181 47.826 0.00 0.00 40.82 4.02
1211 1218 1.154225 GCAATTTGAGTCGCCGTGG 60.154 57.895 0.00 0.00 0.00 4.94
1219 1226 1.934220 GAGTCGCCGTGGACTGATCA 61.934 60.000 9.98 0.00 46.85 2.92
1229 1236 2.932614 GTGGACTGATCACTTCGGATTG 59.067 50.000 0.00 0.00 34.56 2.67
1234 1241 1.739466 TGATCACTTCGGATTGCTTGC 59.261 47.619 0.00 0.00 0.00 4.01
1257 1264 1.001181 CCCCTTTTTGTCGAGGTCGTA 59.999 52.381 0.00 0.00 40.80 3.43
1370 1549 2.435938 GGCGCGGATTTCCTCACA 60.436 61.111 8.83 0.00 0.00 3.58
1391 1570 1.794714 AGGAGGTGCAATACGAGGAT 58.205 50.000 0.00 0.00 0.00 3.24
1413 1592 1.484240 GGCTCTTCACTCTGCAGGTAT 59.516 52.381 15.13 0.00 0.00 2.73
1595 2181 7.470563 GCTCTGGGGGTAAATTGATATCAAAAG 60.471 40.741 21.50 8.53 39.55 2.27
1600 2186 9.378551 GGGGGTAAATTGATATCAAAAGAAAAC 57.621 33.333 21.50 13.09 39.55 2.43
1662 2661 5.131067 AGAGTCAGTGTTGTCAGTACAGTA 58.869 41.667 0.00 0.00 36.83 2.74
1722 2870 7.773690 AGTGTCAAGTTGGTACTCTAATTTTGT 59.226 33.333 2.34 0.00 31.99 2.83
1745 2893 8.746052 TGTTTCTTACCATCGGAATCATAAAT 57.254 30.769 0.00 0.00 0.00 1.40
1865 3158 4.351874 TCCCTTTCCTCTTAACACTGTG 57.648 45.455 6.19 6.19 0.00 3.66
1930 3223 6.439058 ACTTTATCACAGAAGGAAGAGCTACT 59.561 38.462 0.00 0.00 0.00 2.57
1964 3257 9.474920 AAATTAAATATGCAACCCATAATGTCG 57.525 29.630 0.00 0.00 39.71 4.35
2009 3315 2.299993 TTCTTCAGTGCCTATCAGCG 57.700 50.000 0.00 0.00 34.65 5.18
2090 3397 4.590647 TGCCCATAGTTTCCATCACAAAAA 59.409 37.500 0.00 0.00 0.00 1.94
2176 3483 4.712476 AGATAATCCAGTGTCCATTCTGC 58.288 43.478 0.00 0.00 0.00 4.26
2188 3495 4.284490 TGTCCATTCTGCTAGAAGTTCACT 59.716 41.667 5.50 0.00 37.69 3.41
2293 3600 8.528044 TTTCTTAAAGGTGGTAGTTGTTGAAT 57.472 30.769 0.00 0.00 0.00 2.57
2374 3682 3.876320 GCTTAGCTCTTCTGCTGCTTTAT 59.124 43.478 0.00 0.00 43.87 1.40
2870 4217 2.275318 GAGACATCTGCGAAAGAAGGG 58.725 52.381 0.00 0.00 38.79 3.95
2960 4307 2.449556 AAGCGCGTTCTCTTGCTTGC 62.450 55.000 8.43 0.00 45.29 4.01
3132 4482 5.529430 TCCGTTGTTTTCATGACATGTACTT 59.471 36.000 14.98 0.00 0.00 2.24
3141 4491 6.161855 TCATGACATGTACTTTAGCTAGGG 57.838 41.667 14.98 0.00 0.00 3.53
3209 4802 7.429920 TCAAGTTGTGTTTTATTTCGTTAGCAC 59.570 33.333 2.11 0.00 0.00 4.40
3225 4818 6.065153 CGTTAGCACGCTATCATGTTTATTC 58.935 40.000 0.00 0.00 40.18 1.75
3329 4923 1.065701 CAAAGATCATCAGGCTGCTGC 59.934 52.381 13.33 7.10 38.76 5.25
3380 4974 3.256631 ACCATTGAACATGCTGTCTTTCC 59.743 43.478 0.00 0.00 0.00 3.13
3499 5093 6.754193 TGTCTGTCATCTTGTATGTTGTGTA 58.246 36.000 0.00 0.00 0.00 2.90
3500 5094 6.868339 TGTCTGTCATCTTGTATGTTGTGTAG 59.132 38.462 0.00 0.00 0.00 2.74
3513 5107 7.912773 TGTATGTTGTGTAGTTTGTTGTGAATG 59.087 33.333 0.00 0.00 0.00 2.67
3576 5171 3.384789 TCTGTGTATGTGTGGAGCTATCC 59.615 47.826 0.00 0.00 46.87 2.59
3599 5195 2.520741 AGTGGGGGCACGTTTTGG 60.521 61.111 0.00 0.00 0.00 3.28
3612 5208 0.386731 GTTTTGGAATGCGTGGTCGG 60.387 55.000 0.00 0.00 37.56 4.79
3671 5275 9.252962 CAAGTTCAGACTGCAAATTTTATCTTT 57.747 29.630 0.00 0.00 35.91 2.52
3701 5305 5.591877 GGATATTTAGATGCCATGCTAAGGG 59.408 44.000 0.00 0.00 0.00 3.95
3807 5423 2.802247 GCTCCGCTTTTCTGCAATTTTT 59.198 40.909 0.00 0.00 0.00 1.94
3832 5448 4.244066 GTCTTCTCCGTACTTTTCCCTTC 58.756 47.826 0.00 0.00 0.00 3.46
3979 5604 1.279558 TGCGGTTCATGTAGCCCTAAA 59.720 47.619 0.00 0.00 0.00 1.85
3980 5605 2.290387 TGCGGTTCATGTAGCCCTAAAA 60.290 45.455 0.00 0.00 0.00 1.52
3981 5606 2.096980 GCGGTTCATGTAGCCCTAAAAC 59.903 50.000 0.00 0.00 0.00 2.43
3982 5607 2.350498 CGGTTCATGTAGCCCTAAAACG 59.650 50.000 0.00 0.00 0.00 3.60
3983 5608 2.096980 GGTTCATGTAGCCCTAAAACGC 59.903 50.000 0.00 0.00 0.00 4.84
3984 5609 2.032680 TCATGTAGCCCTAAAACGCC 57.967 50.000 0.00 0.00 0.00 5.68
3985 5610 1.021968 CATGTAGCCCTAAAACGCCC 58.978 55.000 0.00 0.00 0.00 6.13
3986 5611 0.916809 ATGTAGCCCTAAAACGCCCT 59.083 50.000 0.00 0.00 0.00 5.19
3987 5612 0.251073 TGTAGCCCTAAAACGCCCTC 59.749 55.000 0.00 0.00 0.00 4.30
3988 5613 0.808847 GTAGCCCTAAAACGCCCTCG 60.809 60.000 0.00 0.00 42.43 4.63
3989 5614 1.963464 TAGCCCTAAAACGCCCTCGG 61.963 60.000 0.00 0.00 40.69 4.63
3990 5615 2.666812 CCCTAAAACGCCCTCGGT 59.333 61.111 0.00 0.00 40.69 4.69
3991 5616 1.449070 CCCTAAAACGCCCTCGGTC 60.449 63.158 0.00 0.00 40.69 4.79
3992 5617 1.808390 CCTAAAACGCCCTCGGTCG 60.808 63.158 0.00 0.00 40.69 4.79
3993 5618 2.432972 TAAAACGCCCTCGGTCGC 60.433 61.111 0.00 0.00 40.69 5.19
3994 5619 2.830704 CTAAAACGCCCTCGGTCGCT 62.831 60.000 0.00 0.00 40.69 4.93
3995 5620 2.824071 TAAAACGCCCTCGGTCGCTC 62.824 60.000 0.00 0.00 40.69 5.03
4002 5627 2.829003 CTCGGTCGCTCCTGCCTA 60.829 66.667 0.00 0.00 35.36 3.93
4003 5628 2.829003 TCGGTCGCTCCTGCCTAG 60.829 66.667 0.00 0.00 35.36 3.02
4004 5629 3.905678 CGGTCGCTCCTGCCTAGG 61.906 72.222 3.67 3.67 46.06 3.02
4005 5630 3.541713 GGTCGCTCCTGCCTAGGG 61.542 72.222 11.72 0.00 44.70 3.53
4006 5631 2.760385 GTCGCTCCTGCCTAGGGT 60.760 66.667 11.72 0.00 44.70 4.34
4007 5632 2.759973 TCGCTCCTGCCTAGGGTG 60.760 66.667 11.72 0.00 44.70 4.61
4008 5633 2.759973 CGCTCCTGCCTAGGGTGA 60.760 66.667 11.72 0.00 44.70 4.02
4009 5634 2.904131 GCTCCTGCCTAGGGTGAC 59.096 66.667 11.72 0.00 44.70 3.67
4010 5635 1.687493 GCTCCTGCCTAGGGTGACT 60.687 63.158 11.72 0.00 44.70 3.41
4011 5636 1.681486 GCTCCTGCCTAGGGTGACTC 61.681 65.000 11.72 0.00 44.70 3.36
4012 5637 1.379977 TCCTGCCTAGGGTGACTCG 60.380 63.158 11.72 0.00 44.70 4.18
4013 5638 1.379977 CCTGCCTAGGGTGACTCGA 60.380 63.158 11.72 0.00 40.63 4.04
4014 5639 1.388065 CCTGCCTAGGGTGACTCGAG 61.388 65.000 11.84 11.84 40.63 4.04
4015 5640 1.379977 TGCCTAGGGTGACTCGAGG 60.380 63.158 18.41 7.31 0.00 4.63
4016 5641 2.128507 GCCTAGGGTGACTCGAGGG 61.129 68.421 18.41 6.55 0.00 4.30
4017 5642 1.306970 CCTAGGGTGACTCGAGGGT 59.693 63.158 18.41 0.00 0.00 4.34
4018 5643 0.324460 CCTAGGGTGACTCGAGGGTT 60.324 60.000 18.41 0.00 0.00 4.11
4019 5644 1.104630 CTAGGGTGACTCGAGGGTTC 58.895 60.000 18.41 5.96 0.00 3.62
4020 5645 0.324091 TAGGGTGACTCGAGGGTTCC 60.324 60.000 18.41 12.57 0.00 3.62
4021 5646 1.609794 GGGTGACTCGAGGGTTCCT 60.610 63.158 18.41 0.00 36.03 3.36
4022 5647 1.605971 GGGTGACTCGAGGGTTCCTC 61.606 65.000 18.41 4.38 46.44 3.71
4031 5656 3.327404 GGGTTCCTCCTCCCGCAA 61.327 66.667 0.00 0.00 33.97 4.85
4032 5657 2.046217 GGTTCCTCCTCCCGCAAC 60.046 66.667 0.00 0.00 0.00 4.17
4033 5658 2.046217 GTTCCTCCTCCCGCAACC 60.046 66.667 0.00 0.00 0.00 3.77
4034 5659 2.528127 TTCCTCCTCCCGCAACCA 60.528 61.111 0.00 0.00 0.00 3.67
4035 5660 2.150719 TTCCTCCTCCCGCAACCAA 61.151 57.895 0.00 0.00 0.00 3.67
4036 5661 1.710996 TTCCTCCTCCCGCAACCAAA 61.711 55.000 0.00 0.00 0.00 3.28
4037 5662 1.675641 CCTCCTCCCGCAACCAAAG 60.676 63.158 0.00 0.00 0.00 2.77
4038 5663 2.282180 TCCTCCCGCAACCAAAGC 60.282 61.111 0.00 0.00 0.00 3.51
4046 5671 3.645975 CAACCAAAGCGCCGTCGT 61.646 61.111 2.29 0.00 38.14 4.34
4047 5672 2.029369 AACCAAAGCGCCGTCGTA 59.971 55.556 2.29 0.00 38.14 3.43
4048 5673 2.025418 AACCAAAGCGCCGTCGTAG 61.025 57.895 2.29 0.00 38.14 3.51
4049 5674 2.431942 CCAAAGCGCCGTCGTAGT 60.432 61.111 2.29 0.00 38.14 2.73
4050 5675 2.025418 CCAAAGCGCCGTCGTAGTT 61.025 57.895 2.29 0.00 38.14 2.24
4051 5676 1.414897 CAAAGCGCCGTCGTAGTTC 59.585 57.895 2.29 0.00 38.14 3.01
4052 5677 1.007038 AAAGCGCCGTCGTAGTTCA 60.007 52.632 2.29 0.00 38.14 3.18
4053 5678 0.389426 AAAGCGCCGTCGTAGTTCAT 60.389 50.000 2.29 0.00 38.14 2.57
4054 5679 0.801067 AAGCGCCGTCGTAGTTCATC 60.801 55.000 2.29 0.00 38.14 2.92
4055 5680 1.226603 GCGCCGTCGTAGTTCATCT 60.227 57.895 0.00 0.00 38.14 2.90
4056 5681 1.201098 GCGCCGTCGTAGTTCATCTC 61.201 60.000 0.00 0.00 38.14 2.75
4057 5682 0.591741 CGCCGTCGTAGTTCATCTCC 60.592 60.000 0.00 0.00 0.00 3.71
4058 5683 0.739561 GCCGTCGTAGTTCATCTCCT 59.260 55.000 0.00 0.00 0.00 3.69
4059 5684 1.268640 GCCGTCGTAGTTCATCTCCTC 60.269 57.143 0.00 0.00 0.00 3.71
4060 5685 1.334243 CCGTCGTAGTTCATCTCCTCC 59.666 57.143 0.00 0.00 0.00 4.30
4061 5686 1.334243 CGTCGTAGTTCATCTCCTCCC 59.666 57.143 0.00 0.00 0.00 4.30
4062 5687 1.682323 GTCGTAGTTCATCTCCTCCCC 59.318 57.143 0.00 0.00 0.00 4.81
4063 5688 1.041437 CGTAGTTCATCTCCTCCCCC 58.959 60.000 0.00 0.00 0.00 5.40
4064 5689 1.041437 GTAGTTCATCTCCTCCCCCG 58.959 60.000 0.00 0.00 0.00 5.73
4065 5690 0.759436 TAGTTCATCTCCTCCCCCGC 60.759 60.000 0.00 0.00 0.00 6.13
4066 5691 3.154473 TTCATCTCCTCCCCCGCG 61.154 66.667 0.00 0.00 0.00 6.46
4067 5692 3.976490 TTCATCTCCTCCCCCGCGT 62.976 63.158 4.92 0.00 0.00 6.01
4068 5693 3.470888 CATCTCCTCCCCCGCGTT 61.471 66.667 4.92 0.00 0.00 4.84
4069 5694 3.470888 ATCTCCTCCCCCGCGTTG 61.471 66.667 4.92 0.00 0.00 4.10
4082 5707 3.121030 CGTTGCCGCTGGAGGAAG 61.121 66.667 0.00 0.00 0.00 3.46
4083 5708 3.435186 GTTGCCGCTGGAGGAAGC 61.435 66.667 0.00 0.00 39.94 3.86
4084 5709 4.722700 TTGCCGCTGGAGGAAGCC 62.723 66.667 0.00 0.00 40.23 4.35
4131 5756 3.984749 GCGGCGGGGATCTCTCTC 61.985 72.222 9.78 0.00 0.00 3.20
4132 5757 3.665226 CGGCGGGGATCTCTCTCG 61.665 72.222 0.00 0.00 0.00 4.04
4133 5758 3.984749 GGCGGGGATCTCTCTCGC 61.985 72.222 6.20 6.20 40.53 5.03
4134 5759 4.335584 GCGGGGATCTCTCTCGCG 62.336 72.222 0.00 0.00 35.60 5.87
4135 5760 3.665226 CGGGGATCTCTCTCGCGG 61.665 72.222 6.13 0.00 34.07 6.46
4136 5761 3.984749 GGGGATCTCTCTCGCGGC 61.985 72.222 6.13 0.00 0.00 6.53
4137 5762 3.219928 GGGATCTCTCTCGCGGCA 61.220 66.667 6.13 0.00 0.00 5.69
4138 5763 2.569354 GGGATCTCTCTCGCGGCAT 61.569 63.158 6.13 0.00 0.00 4.40
4139 5764 1.080839 GGATCTCTCTCGCGGCATC 60.081 63.158 6.13 0.00 0.00 3.91
4140 5765 1.080839 GATCTCTCTCGCGGCATCC 60.081 63.158 6.13 0.00 0.00 3.51
4141 5766 2.485188 GATCTCTCTCGCGGCATCCC 62.485 65.000 6.13 0.00 0.00 3.85
4142 5767 2.992817 ATCTCTCTCGCGGCATCCCT 62.993 60.000 6.13 0.00 0.00 4.20
4143 5768 2.759973 TCTCTCGCGGCATCCCTT 60.760 61.111 6.13 0.00 0.00 3.95
4144 5769 2.587194 CTCTCGCGGCATCCCTTG 60.587 66.667 6.13 0.00 0.00 3.61
4145 5770 3.074369 TCTCGCGGCATCCCTTGA 61.074 61.111 6.13 0.00 0.00 3.02
4146 5771 2.109799 CTCGCGGCATCCCTTGAT 59.890 61.111 6.13 0.00 0.00 2.57
4147 5772 1.958205 CTCGCGGCATCCCTTGATC 60.958 63.158 6.13 0.00 0.00 2.92
4148 5773 2.109799 CGCGGCATCCCTTGATCT 59.890 61.111 0.00 0.00 0.00 2.75
4149 5774 2.249535 CGCGGCATCCCTTGATCTG 61.250 63.158 0.00 0.00 0.00 2.90
4150 5775 2.550101 GCGGCATCCCTTGATCTGC 61.550 63.158 0.00 0.00 0.00 4.26
4151 5776 1.153107 CGGCATCCCTTGATCTGCA 60.153 57.895 4.94 0.00 0.00 4.41
4152 5777 1.164662 CGGCATCCCTTGATCTGCAG 61.165 60.000 7.63 7.63 0.00 4.41
4153 5778 0.822532 GGCATCCCTTGATCTGCAGG 60.823 60.000 15.13 0.00 0.00 4.85
4154 5779 1.453762 GCATCCCTTGATCTGCAGGC 61.454 60.000 15.13 7.22 0.00 4.85
4155 5780 1.147824 ATCCCTTGATCTGCAGGCG 59.852 57.895 15.13 0.00 0.00 5.52
4156 5781 2.335092 ATCCCTTGATCTGCAGGCGG 62.335 60.000 15.13 7.23 0.00 6.13
4157 5782 3.207669 CCTTGATCTGCAGGCGGC 61.208 66.667 15.13 0.00 45.13 6.53
4166 5791 2.432972 GCAGGCGGCAACATTTGG 60.433 61.111 13.08 0.00 43.97 3.28
4167 5792 3.050339 CAGGCGGCAACATTTGGT 58.950 55.556 13.08 0.00 0.00 3.67
4168 5793 1.373246 CAGGCGGCAACATTTGGTG 60.373 57.895 13.08 0.00 35.41 4.17
4169 5794 2.048316 GGCGGCAACATTTGGTGG 60.048 61.111 3.07 0.00 32.22 4.61
4170 5795 2.569354 GGCGGCAACATTTGGTGGA 61.569 57.895 3.07 0.00 32.22 4.02
4171 5796 1.080569 GCGGCAACATTTGGTGGAG 60.081 57.895 0.00 0.00 32.22 3.86
4172 5797 1.586028 CGGCAACATTTGGTGGAGG 59.414 57.895 0.00 0.00 32.22 4.30
4173 5798 1.293179 GGCAACATTTGGTGGAGGC 59.707 57.895 0.00 0.00 32.22 4.70
4174 5799 1.293179 GCAACATTTGGTGGAGGCC 59.707 57.895 0.00 0.00 32.22 5.19
4175 5800 1.586028 CAACATTTGGTGGAGGCCG 59.414 57.895 0.00 0.00 0.00 6.13
4176 5801 2.275380 AACATTTGGTGGAGGCCGC 61.275 57.895 0.00 0.00 0.00 6.53
4216 5841 4.139234 GCGTACGGGGTGGGTCTC 62.139 72.222 18.39 0.00 0.00 3.36
4217 5842 3.818787 CGTACGGGGTGGGTCTCG 61.819 72.222 7.57 0.00 0.00 4.04
4218 5843 3.455469 GTACGGGGTGGGTCTCGG 61.455 72.222 0.00 0.00 0.00 4.63
4223 5848 4.754667 GGGTGGGTCTCGGCGAAC 62.755 72.222 12.13 11.99 0.00 3.95
4229 5854 4.353437 GTCTCGGCGAACGGTGGT 62.353 66.667 12.13 0.00 44.45 4.16
4230 5855 2.672651 TCTCGGCGAACGGTGGTA 60.673 61.111 12.13 0.00 44.45 3.25
4231 5856 2.202570 CTCGGCGAACGGTGGTAG 60.203 66.667 12.13 0.00 44.45 3.18
4232 5857 3.695022 CTCGGCGAACGGTGGTAGG 62.695 68.421 12.13 0.00 44.45 3.18
4234 5859 4.078516 GGCGAACGGTGGTAGGCT 62.079 66.667 0.00 0.00 0.00 4.58
4235 5860 2.813908 GCGAACGGTGGTAGGCTG 60.814 66.667 0.00 0.00 0.00 4.85
4236 5861 2.654877 CGAACGGTGGTAGGCTGT 59.345 61.111 0.00 0.00 0.00 4.40
4237 5862 1.736645 CGAACGGTGGTAGGCTGTG 60.737 63.158 0.00 0.00 0.00 3.66
4238 5863 1.375523 GAACGGTGGTAGGCTGTGG 60.376 63.158 0.00 0.00 0.00 4.17
4239 5864 2.798148 GAACGGTGGTAGGCTGTGGG 62.798 65.000 0.00 0.00 0.00 4.61
4240 5865 4.096003 CGGTGGTAGGCTGTGGGG 62.096 72.222 0.00 0.00 0.00 4.96
4241 5866 2.609610 GGTGGTAGGCTGTGGGGA 60.610 66.667 0.00 0.00 0.00 4.81
4242 5867 2.001269 GGTGGTAGGCTGTGGGGAT 61.001 63.158 0.00 0.00 0.00 3.85
4243 5868 1.527370 GTGGTAGGCTGTGGGGATC 59.473 63.158 0.00 0.00 0.00 3.36
4244 5869 2.063979 TGGTAGGCTGTGGGGATCG 61.064 63.158 0.00 0.00 0.00 3.69
4245 5870 2.808206 GGTAGGCTGTGGGGATCGG 61.808 68.421 0.00 0.00 0.00 4.18
4246 5871 1.760875 GTAGGCTGTGGGGATCGGA 60.761 63.158 0.00 0.00 0.00 4.55
4247 5872 1.760875 TAGGCTGTGGGGATCGGAC 60.761 63.158 0.00 0.00 0.00 4.79
4248 5873 4.176752 GGCTGTGGGGATCGGACC 62.177 72.222 0.00 0.00 0.00 4.46
4249 5874 3.083997 GCTGTGGGGATCGGACCT 61.084 66.667 0.00 0.00 0.00 3.85
4250 5875 3.095347 GCTGTGGGGATCGGACCTC 62.095 68.421 0.00 0.00 0.00 3.85
4251 5876 2.758327 TGTGGGGATCGGACCTCG 60.758 66.667 0.00 0.00 40.90 4.63
4252 5877 2.758737 GTGGGGATCGGACCTCGT 60.759 66.667 0.00 0.00 40.32 4.18
4253 5878 2.441532 TGGGGATCGGACCTCGTC 60.442 66.667 0.00 0.00 40.32 4.20
4254 5879 3.593794 GGGGATCGGACCTCGTCG 61.594 72.222 0.00 0.00 40.32 5.12
4255 5880 3.593794 GGGATCGGACCTCGTCGG 61.594 72.222 0.00 0.00 40.32 4.79
4256 5881 3.593794 GGATCGGACCTCGTCGGG 61.594 72.222 0.00 0.00 40.32 5.14
4257 5882 4.267503 GATCGGACCTCGTCGGGC 62.268 72.222 0.00 0.00 41.67 6.13
4280 5905 4.162690 GCCTAGCCAGGGTCGGTG 62.163 72.222 10.80 0.00 42.88 4.94
4281 5906 3.470888 CCTAGCCAGGGTCGGTGG 61.471 72.222 0.00 0.00 38.41 4.61
4282 5907 2.363795 CTAGCCAGGGTCGGTGGA 60.364 66.667 0.00 0.00 37.23 4.02
4283 5908 1.762460 CTAGCCAGGGTCGGTGGAT 60.762 63.158 0.00 0.00 37.23 3.41
4284 5909 1.306654 TAGCCAGGGTCGGTGGATT 60.307 57.895 0.00 0.00 37.23 3.01
4285 5910 1.335132 TAGCCAGGGTCGGTGGATTC 61.335 60.000 0.00 0.00 37.23 2.52
4286 5911 2.186903 CCAGGGTCGGTGGATTCG 59.813 66.667 0.00 0.00 37.23 3.34
4287 5912 2.656069 CCAGGGTCGGTGGATTCGT 61.656 63.158 0.00 0.00 37.23 3.85
4288 5913 1.153628 CAGGGTCGGTGGATTCGTC 60.154 63.158 0.00 0.00 0.00 4.20
4289 5914 2.186125 GGGTCGGTGGATTCGTCC 59.814 66.667 0.00 0.00 35.65 4.79
4290 5915 2.652095 GGGTCGGTGGATTCGTCCA 61.652 63.158 0.00 0.00 37.51 4.02
4291 5916 1.520666 GGTCGGTGGATTCGTCCAT 59.479 57.895 0.00 0.00 42.41 3.41
4292 5917 0.748450 GGTCGGTGGATTCGTCCATA 59.252 55.000 0.00 0.00 42.41 2.74
4293 5918 1.343465 GGTCGGTGGATTCGTCCATAT 59.657 52.381 0.00 0.00 42.41 1.78
4294 5919 2.609737 GGTCGGTGGATTCGTCCATATC 60.610 54.545 0.00 0.00 42.41 1.63
4295 5920 1.268625 TCGGTGGATTCGTCCATATCG 59.731 52.381 0.00 6.08 42.41 2.92
4296 5921 1.668919 CGGTGGATTCGTCCATATCGG 60.669 57.143 0.00 0.00 42.41 4.18
4297 5922 1.429463 GTGGATTCGTCCATATCGGC 58.571 55.000 0.00 0.00 42.41 5.54
4298 5923 0.320374 TGGATTCGTCCATATCGGCC 59.680 55.000 0.00 0.00 34.33 6.13
4299 5924 0.391263 GGATTCGTCCATATCGGCCC 60.391 60.000 0.00 0.00 33.14 5.80
4300 5925 0.320374 GATTCGTCCATATCGGCCCA 59.680 55.000 0.00 0.00 33.14 5.36
4301 5926 0.984230 ATTCGTCCATATCGGCCCAT 59.016 50.000 0.00 0.00 33.14 4.00
4302 5927 0.320374 TTCGTCCATATCGGCCCATC 59.680 55.000 0.00 0.00 33.14 3.51
4303 5928 0.541998 TCGTCCATATCGGCCCATCT 60.542 55.000 0.00 0.00 33.14 2.90
4304 5929 1.182667 CGTCCATATCGGCCCATCTA 58.817 55.000 0.00 0.00 33.14 1.98
4305 5930 1.757118 CGTCCATATCGGCCCATCTAT 59.243 52.381 0.00 0.00 33.14 1.98
4306 5931 2.168521 CGTCCATATCGGCCCATCTATT 59.831 50.000 0.00 0.00 33.14 1.73
4307 5932 3.535561 GTCCATATCGGCCCATCTATTG 58.464 50.000 0.00 0.00 33.14 1.90
4308 5933 2.505407 TCCATATCGGCCCATCTATTGG 59.495 50.000 0.00 0.00 46.00 3.16
4309 5934 2.292267 CATATCGGCCCATCTATTGGC 58.708 52.381 0.00 0.00 44.97 4.52
4314 5939 3.403936 GCCCATCTATTGGCTTCGT 57.596 52.632 0.00 0.00 44.97 3.85
4315 5940 1.230324 GCCCATCTATTGGCTTCGTC 58.770 55.000 0.00 0.00 44.97 4.20
4316 5941 1.884235 CCCATCTATTGGCTTCGTCC 58.116 55.000 0.00 0.00 44.97 4.79
4317 5942 1.140852 CCCATCTATTGGCTTCGTCCA 59.859 52.381 0.00 0.00 44.97 4.02
4323 5948 3.616284 TTGGCTTCGTCCAAATCGA 57.384 47.368 0.00 0.00 42.69 3.59
4324 5949 1.438651 TTGGCTTCGTCCAAATCGAG 58.561 50.000 0.00 0.00 42.69 4.04
4325 5950 0.391130 TGGCTTCGTCCAAATCGAGG 60.391 55.000 0.00 0.00 38.52 4.63
4326 5951 0.108329 GGCTTCGTCCAAATCGAGGA 60.108 55.000 0.00 0.00 38.52 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.696917 GACTCAAACTTCCATTTGATTTATTGT 57.303 29.630 1.68 0.00 45.21 2.71
48 49 9.695526 TGACTCAAACTTCCATTTGATTTATTG 57.304 29.630 1.68 0.00 45.21 1.90
60 61 9.443323 TCGAATATTTATTGACTCAAACTTCCA 57.557 29.630 0.00 0.00 0.00 3.53
99 100 9.921637 GATGATTGGTTTACAACTTTCCATTTA 57.078 29.630 0.00 0.00 42.94 1.40
100 101 7.877612 GGATGATTGGTTTACAACTTTCCATTT 59.122 33.333 0.00 0.00 42.94 2.32
101 102 7.016072 TGGATGATTGGTTTACAACTTTCCATT 59.984 33.333 0.00 0.00 42.94 3.16
102 103 6.496565 TGGATGATTGGTTTACAACTTTCCAT 59.503 34.615 0.00 0.00 42.94 3.41
103 104 5.835819 TGGATGATTGGTTTACAACTTTCCA 59.164 36.000 0.00 0.00 42.94 3.53
104 105 6.339587 TGGATGATTGGTTTACAACTTTCC 57.660 37.500 0.00 0.00 42.94 3.13
107 108 9.693739 TGTATATGGATGATTGGTTTACAACTT 57.306 29.630 0.00 0.00 42.94 2.66
108 109 9.693739 TTGTATATGGATGATTGGTTTACAACT 57.306 29.630 0.00 0.00 42.94 3.16
163 164 9.679661 TGAAAGACCTATGCTTGTAATGAATTA 57.320 29.630 0.00 0.00 0.00 1.40
164 165 8.579850 TGAAAGACCTATGCTTGTAATGAATT 57.420 30.769 0.00 0.00 0.00 2.17
165 166 7.831193 ACTGAAAGACCTATGCTTGTAATGAAT 59.169 33.333 0.00 0.00 37.43 2.57
166 167 7.168219 ACTGAAAGACCTATGCTTGTAATGAA 58.832 34.615 0.00 0.00 37.43 2.57
167 168 6.711277 ACTGAAAGACCTATGCTTGTAATGA 58.289 36.000 0.00 0.00 37.43 2.57
168 169 6.992063 ACTGAAAGACCTATGCTTGTAATG 57.008 37.500 0.00 0.00 37.43 1.90
169 170 9.113838 CAATACTGAAAGACCTATGCTTGTAAT 57.886 33.333 0.00 0.00 37.43 1.89
170 171 7.065803 GCAATACTGAAAGACCTATGCTTGTAA 59.934 37.037 0.00 0.00 37.43 2.41
171 172 6.538742 GCAATACTGAAAGACCTATGCTTGTA 59.461 38.462 0.00 0.00 37.43 2.41
172 173 5.355350 GCAATACTGAAAGACCTATGCTTGT 59.645 40.000 0.00 0.00 37.43 3.16
173 174 5.587844 AGCAATACTGAAAGACCTATGCTTG 59.412 40.000 0.00 0.00 35.00 4.01
174 175 5.749462 AGCAATACTGAAAGACCTATGCTT 58.251 37.500 0.00 0.00 35.00 3.91
175 176 5.130145 AGAGCAATACTGAAAGACCTATGCT 59.870 40.000 0.00 0.00 38.66 3.79
176 177 5.236047 CAGAGCAATACTGAAAGACCTATGC 59.764 44.000 0.00 0.00 37.54 3.14
177 178 6.478344 GTCAGAGCAATACTGAAAGACCTATG 59.522 42.308 0.00 0.00 44.29 2.23
178 179 6.382570 AGTCAGAGCAATACTGAAAGACCTAT 59.617 38.462 0.00 0.00 44.29 2.57
179 180 5.717178 AGTCAGAGCAATACTGAAAGACCTA 59.283 40.000 0.00 0.00 44.29 3.08
180 181 4.530161 AGTCAGAGCAATACTGAAAGACCT 59.470 41.667 0.00 0.00 44.29 3.85
181 182 4.629200 CAGTCAGAGCAATACTGAAAGACC 59.371 45.833 0.00 0.00 44.29 3.85
182 183 5.473931 TCAGTCAGAGCAATACTGAAAGAC 58.526 41.667 8.26 0.00 44.89 3.01
183 184 5.728637 TCAGTCAGAGCAATACTGAAAGA 57.271 39.130 8.26 0.00 44.89 2.52
188 189 7.150640 TGCTATAATCAGTCAGAGCAATACTG 58.849 38.462 0.00 0.00 41.58 2.74
189 190 7.295322 TGCTATAATCAGTCAGAGCAATACT 57.705 36.000 0.00 0.00 37.01 2.12
190 191 7.953158 TTGCTATAATCAGTCAGAGCAATAC 57.047 36.000 3.13 0.00 43.08 1.89
194 195 5.922053 ACATTGCTATAATCAGTCAGAGCA 58.078 37.500 0.00 0.00 38.12 4.26
195 196 7.151308 ACTACATTGCTATAATCAGTCAGAGC 58.849 38.462 0.00 0.00 0.00 4.09
196 197 8.355913 TGACTACATTGCTATAATCAGTCAGAG 58.644 37.037 0.00 0.00 36.99 3.35
197 198 8.237811 TGACTACATTGCTATAATCAGTCAGA 57.762 34.615 0.00 0.00 36.99 3.27
198 199 8.877808 TTGACTACATTGCTATAATCAGTCAG 57.122 34.615 0.00 0.00 41.35 3.51
199 200 9.098355 GTTTGACTACATTGCTATAATCAGTCA 57.902 33.333 0.00 0.00 39.36 3.41
200 201 8.269424 CGTTTGACTACATTGCTATAATCAGTC 58.731 37.037 0.00 0.00 33.43 3.51
201 202 7.979537 TCGTTTGACTACATTGCTATAATCAGT 59.020 33.333 0.00 0.00 0.00 3.41
202 203 8.269424 GTCGTTTGACTACATTGCTATAATCAG 58.731 37.037 0.00 0.00 42.08 2.90
203 204 7.762159 TGTCGTTTGACTACATTGCTATAATCA 59.238 33.333 0.00 0.00 45.70 2.57
204 205 8.126871 TGTCGTTTGACTACATTGCTATAATC 57.873 34.615 0.00 0.00 45.70 1.75
205 206 8.662781 ATGTCGTTTGACTACATTGCTATAAT 57.337 30.769 0.00 0.00 45.70 1.28
206 207 7.762159 TGATGTCGTTTGACTACATTGCTATAA 59.238 33.333 0.67 0.00 45.70 0.98
207 208 7.262048 TGATGTCGTTTGACTACATTGCTATA 58.738 34.615 0.67 0.00 45.70 1.31
208 209 6.106003 TGATGTCGTTTGACTACATTGCTAT 58.894 36.000 0.67 0.00 45.70 2.97
209 210 5.474825 TGATGTCGTTTGACTACATTGCTA 58.525 37.500 0.67 0.00 45.70 3.49
210 211 4.314961 TGATGTCGTTTGACTACATTGCT 58.685 39.130 0.67 0.00 45.70 3.91
211 212 4.661993 TGATGTCGTTTGACTACATTGC 57.338 40.909 0.67 0.00 45.70 3.56
212 213 6.073276 TCCTTTGATGTCGTTTGACTACATTG 60.073 38.462 0.67 0.00 45.70 2.82
213 214 5.995282 TCCTTTGATGTCGTTTGACTACATT 59.005 36.000 0.67 0.00 45.70 2.71
214 215 5.408604 GTCCTTTGATGTCGTTTGACTACAT 59.591 40.000 0.00 0.00 45.70 2.29
215 216 4.748102 GTCCTTTGATGTCGTTTGACTACA 59.252 41.667 0.00 0.00 45.70 2.74
216 217 4.748102 TGTCCTTTGATGTCGTTTGACTAC 59.252 41.667 0.00 0.00 45.70 2.73
217 218 4.951254 TGTCCTTTGATGTCGTTTGACTA 58.049 39.130 0.00 0.00 45.70 2.59
218 219 3.804036 TGTCCTTTGATGTCGTTTGACT 58.196 40.909 0.00 0.00 45.70 3.41
219 220 4.545823 TTGTCCTTTGATGTCGTTTGAC 57.454 40.909 0.00 0.00 45.71 3.18
220 221 5.568685 TTTTGTCCTTTGATGTCGTTTGA 57.431 34.783 0.00 0.00 0.00 2.69
221 222 7.922505 TTATTTTGTCCTTTGATGTCGTTTG 57.077 32.000 0.00 0.00 0.00 2.93
222 223 8.977505 CATTTATTTTGTCCTTTGATGTCGTTT 58.022 29.630 0.00 0.00 0.00 3.60
223 224 7.598493 CCATTTATTTTGTCCTTTGATGTCGTT 59.402 33.333 0.00 0.00 0.00 3.85
224 225 7.040062 TCCATTTATTTTGTCCTTTGATGTCGT 60.040 33.333 0.00 0.00 0.00 4.34
225 226 7.312154 TCCATTTATTTTGTCCTTTGATGTCG 58.688 34.615 0.00 0.00 0.00 4.35
226 227 9.487790 TTTCCATTTATTTTGTCCTTTGATGTC 57.512 29.630 0.00 0.00 0.00 3.06
227 228 9.844257 TTTTCCATTTATTTTGTCCTTTGATGT 57.156 25.926 0.00 0.00 0.00 3.06
229 230 9.506018 CCTTTTCCATTTATTTTGTCCTTTGAT 57.494 29.630 0.00 0.00 0.00 2.57
230 231 8.709308 TCCTTTTCCATTTATTTTGTCCTTTGA 58.291 29.630 0.00 0.00 0.00 2.69
231 232 8.900983 TCCTTTTCCATTTATTTTGTCCTTTG 57.099 30.769 0.00 0.00 0.00 2.77
233 234 9.506018 CATTCCTTTTCCATTTATTTTGTCCTT 57.494 29.630 0.00 0.00 0.00 3.36
234 235 8.879227 TCATTCCTTTTCCATTTATTTTGTCCT 58.121 29.630 0.00 0.00 0.00 3.85
235 236 9.500785 TTCATTCCTTTTCCATTTATTTTGTCC 57.499 29.630 0.00 0.00 0.00 4.02
245 246 8.921205 CCATCTATTCTTCATTCCTTTTCCATT 58.079 33.333 0.00 0.00 0.00 3.16
246 247 8.284435 TCCATCTATTCTTCATTCCTTTTCCAT 58.716 33.333 0.00 0.00 0.00 3.41
247 248 7.642186 TCCATCTATTCTTCATTCCTTTTCCA 58.358 34.615 0.00 0.00 0.00 3.53
248 249 7.995488 TCTCCATCTATTCTTCATTCCTTTTCC 59.005 37.037 0.00 0.00 0.00 3.13
249 250 8.970859 TCTCCATCTATTCTTCATTCCTTTTC 57.029 34.615 0.00 0.00 0.00 2.29
252 253 9.163894 TGTATCTCCATCTATTCTTCATTCCTT 57.836 33.333 0.00 0.00 0.00 3.36
253 254 8.733092 TGTATCTCCATCTATTCTTCATTCCT 57.267 34.615 0.00 0.00 0.00 3.36
254 255 9.784531 TTTGTATCTCCATCTATTCTTCATTCC 57.215 33.333 0.00 0.00 0.00 3.01
312 313 8.342634 GCGGCTAGATTTTGATAGTTTTATTCA 58.657 33.333 0.00 0.00 0.00 2.57
313 314 7.530861 CGCGGCTAGATTTTGATAGTTTTATTC 59.469 37.037 0.00 0.00 0.00 1.75
314 315 7.352739 CGCGGCTAGATTTTGATAGTTTTATT 58.647 34.615 0.00 0.00 0.00 1.40
315 316 6.565999 GCGCGGCTAGATTTTGATAGTTTTAT 60.566 38.462 8.83 0.00 0.00 1.40
316 317 5.277154 GCGCGGCTAGATTTTGATAGTTTTA 60.277 40.000 8.83 0.00 0.00 1.52
317 318 4.495844 GCGCGGCTAGATTTTGATAGTTTT 60.496 41.667 8.83 0.00 0.00 2.43
318 319 3.002348 GCGCGGCTAGATTTTGATAGTTT 59.998 43.478 8.83 0.00 0.00 2.66
319 320 2.544267 GCGCGGCTAGATTTTGATAGTT 59.456 45.455 8.83 0.00 0.00 2.24
320 321 2.135933 GCGCGGCTAGATTTTGATAGT 58.864 47.619 8.83 0.00 0.00 2.12
321 322 2.135139 TGCGCGGCTAGATTTTGATAG 58.865 47.619 8.83 0.00 0.00 2.08
322 323 2.232756 TGCGCGGCTAGATTTTGATA 57.767 45.000 8.83 0.00 0.00 2.15
323 324 1.378531 TTGCGCGGCTAGATTTTGAT 58.621 45.000 8.83 0.00 0.00 2.57
324 325 1.160989 TTTGCGCGGCTAGATTTTGA 58.839 45.000 8.83 0.00 0.00 2.69
325 326 1.847999 CATTTGCGCGGCTAGATTTTG 59.152 47.619 8.83 0.00 0.00 2.44
326 327 1.798813 GCATTTGCGCGGCTAGATTTT 60.799 47.619 8.83 0.00 0.00 1.82
327 328 0.248621 GCATTTGCGCGGCTAGATTT 60.249 50.000 8.83 0.00 0.00 2.17
328 329 1.356624 GCATTTGCGCGGCTAGATT 59.643 52.632 8.83 0.00 0.00 2.40
329 330 3.025619 GCATTTGCGCGGCTAGAT 58.974 55.556 8.83 0.00 0.00 1.98
353 354 0.246635 TCAAGAGAACTAGCGGGTGC 59.753 55.000 0.00 0.00 43.24 5.01
354 355 1.546476 AGTCAAGAGAACTAGCGGGTG 59.454 52.381 0.00 0.00 0.00 4.61
355 356 1.819903 GAGTCAAGAGAACTAGCGGGT 59.180 52.381 0.00 0.00 0.00 5.28
356 357 1.202200 CGAGTCAAGAGAACTAGCGGG 60.202 57.143 0.00 0.00 0.00 6.13
357 358 1.738350 TCGAGTCAAGAGAACTAGCGG 59.262 52.381 0.00 0.00 0.00 5.52
358 359 2.673862 TCTCGAGTCAAGAGAACTAGCG 59.326 50.000 13.13 0.00 41.29 4.26
359 360 4.393680 TCTTCTCGAGTCAAGAGAACTAGC 59.606 45.833 13.13 0.00 46.24 3.42
360 361 5.410132 TGTCTTCTCGAGTCAAGAGAACTAG 59.590 44.000 14.91 0.00 46.24 2.57
361 362 5.306394 TGTCTTCTCGAGTCAAGAGAACTA 58.694 41.667 14.91 0.78 46.24 2.24
362 363 4.138290 TGTCTTCTCGAGTCAAGAGAACT 58.862 43.478 14.91 0.00 46.24 3.01
363 364 4.491234 TGTCTTCTCGAGTCAAGAGAAC 57.509 45.455 14.91 6.93 46.24 3.01
368 369 3.428725 CCTGGATGTCTTCTCGAGTCAAG 60.429 52.174 13.13 9.86 0.00 3.02
377 378 5.664908 AGATTATCACACCTGGATGTCTTCT 59.335 40.000 0.00 0.00 0.00 2.85
397 398 0.326264 AAGAGGGCAACGCTGAGATT 59.674 50.000 0.00 0.00 37.60 2.40
399 400 1.188219 AGAAGAGGGCAACGCTGAGA 61.188 55.000 0.00 0.00 37.60 3.27
404 405 0.603975 AGACAAGAAGAGGGCAACGC 60.604 55.000 0.00 0.00 37.60 4.84
408 409 1.556911 GGATCAGACAAGAAGAGGGCA 59.443 52.381 0.00 0.00 0.00 5.36
435 436 5.702209 GTGTCGGTTAAGTTAATTCCCAAGA 59.298 40.000 0.00 0.00 0.00 3.02
458 459 6.821031 AGTCGCCGATCTCTATTATAAAGT 57.179 37.500 0.00 0.00 0.00 2.66
467 468 1.309950 CCAGAAGTCGCCGATCTCTA 58.690 55.000 0.00 0.00 0.00 2.43
537 538 2.594303 TGCCGAAGTTGCCACTGG 60.594 61.111 0.00 0.00 31.60 4.00
541 542 2.904866 GGTGTGCCGAAGTTGCCA 60.905 61.111 0.00 0.00 0.00 4.92
552 553 2.542597 CCATGCATGTTAATGGTGTGC 58.457 47.619 24.58 0.00 38.85 4.57
569 570 9.878737 AAAAATCTATCATTCTCTTCATCCCAT 57.121 29.630 0.00 0.00 0.00 4.00
570 571 9.347240 GAAAAATCTATCATTCTCTTCATCCCA 57.653 33.333 0.00 0.00 0.00 4.37
688 689 6.768861 AGATCGAGCAATCTTAGTACTAGTGT 59.231 38.462 5.39 0.00 31.89 3.55
689 690 7.197071 AGATCGAGCAATCTTAGTACTAGTG 57.803 40.000 5.39 1.06 31.89 2.74
690 691 6.428771 GGAGATCGAGCAATCTTAGTACTAGT 59.571 42.308 2.38 0.00 36.13 2.57
691 692 6.653320 AGGAGATCGAGCAATCTTAGTACTAG 59.347 42.308 2.38 0.00 36.13 2.57
692 693 6.535540 AGGAGATCGAGCAATCTTAGTACTA 58.464 40.000 2.38 0.00 36.13 1.82
693 694 5.381757 AGGAGATCGAGCAATCTTAGTACT 58.618 41.667 2.38 0.00 36.13 2.73
694 695 5.699097 AGGAGATCGAGCAATCTTAGTAC 57.301 43.478 2.38 0.00 36.13 2.73
695 696 5.828328 TCAAGGAGATCGAGCAATCTTAGTA 59.172 40.000 2.38 0.00 36.13 1.82
696 697 4.646945 TCAAGGAGATCGAGCAATCTTAGT 59.353 41.667 2.38 0.00 36.13 2.24
697 698 4.981674 GTCAAGGAGATCGAGCAATCTTAG 59.018 45.833 2.38 0.00 36.13 2.18
698 699 4.402474 TGTCAAGGAGATCGAGCAATCTTA 59.598 41.667 2.38 0.00 36.13 2.10
699 700 3.196469 TGTCAAGGAGATCGAGCAATCTT 59.804 43.478 2.38 0.20 36.13 2.40
700 701 2.762887 TGTCAAGGAGATCGAGCAATCT 59.237 45.455 2.38 0.00 38.72 2.40
701 702 3.122297 CTGTCAAGGAGATCGAGCAATC 58.878 50.000 2.38 0.00 0.00 2.67
702 703 2.741228 GCTGTCAAGGAGATCGAGCAAT 60.741 50.000 2.38 0.00 0.00 3.56
703 704 1.404717 GCTGTCAAGGAGATCGAGCAA 60.405 52.381 2.38 0.00 0.00 3.91
704 705 0.174389 GCTGTCAAGGAGATCGAGCA 59.826 55.000 2.38 0.00 0.00 4.26
747 748 7.147811 GGAGTAGTAGTTTTGGAGTCTGATGAT 60.148 40.741 0.00 0.00 0.00 2.45
766 767 0.903236 GGAAGCTTTCCGGGAGTAGT 59.097 55.000 0.00 0.00 40.59 2.73
1090 1097 1.064758 TGGAAGAGGCAATACCGCAAT 60.065 47.619 0.00 0.00 46.52 3.56
1095 1102 2.789409 ACACTGGAAGAGGCAATACC 57.211 50.000 0.00 0.00 37.43 2.73
1098 1105 1.813513 CGAACACTGGAAGAGGCAAT 58.186 50.000 0.00 0.00 37.43 3.56
1211 1218 2.898705 AGCAATCCGAAGTGATCAGTC 58.101 47.619 2.86 0.00 0.00 3.51
1219 1226 1.678970 GGGGCAAGCAATCCGAAGT 60.679 57.895 0.00 0.00 0.00 3.01
1257 1264 8.663911 CACAAACAAAACAAAATCCAACACTAT 58.336 29.630 0.00 0.00 0.00 2.12
1370 1549 1.906574 TCCTCGTATTGCACCTCCTTT 59.093 47.619 0.00 0.00 0.00 3.11
1391 1570 1.189752 CCTGCAGAGTGAAGAGCCTA 58.810 55.000 17.39 0.00 0.00 3.93
1413 1592 5.528043 TGAATTGCTAAAAGAAGGCACAA 57.472 34.783 0.00 0.00 35.62 3.33
1684 2832 5.106157 CCAACTTGACACTTGGATGGATAAC 60.106 44.000 5.45 0.00 39.58 1.89
1722 2870 8.972458 TGATTTATGATTCCGATGGTAAGAAA 57.028 30.769 0.00 0.00 0.00 2.52
1772 2920 9.113838 CAGATGCAAACTATCTTTACTGGTAAT 57.886 33.333 0.00 0.00 32.75 1.89
1829 2977 2.182516 AGGGAAGAGGGTCTATGGTG 57.817 55.000 0.00 0.00 0.00 4.17
1865 3158 2.825205 ACAAGGCAACAACTCAAATGC 58.175 42.857 0.00 0.00 41.41 3.56
1997 3300 1.536284 GGTCACTACGCTGATAGGCAC 60.536 57.143 0.00 0.00 0.00 5.01
2009 3315 3.560636 AACTGGCATATGGGTCACTAC 57.439 47.619 4.56 0.00 0.00 2.73
2176 3483 9.168451 TCAGATCTTACTGTAGTGAACTTCTAG 57.832 37.037 0.00 0.00 38.79 2.43
2188 3495 6.136155 TCCATGTCCATCAGATCTTACTGTA 58.864 40.000 0.00 0.00 38.79 2.74
2228 3535 5.190528 TGAATGAGAGAAAGAAGGGCTACAT 59.809 40.000 0.00 0.00 0.00 2.29
2389 3697 6.718912 TCCCATATCTACAGAGAGAGAATGTG 59.281 42.308 0.00 0.00 34.35 3.21
2870 4217 5.985781 TGAAAAGCGTCTTCTACATTTGTC 58.014 37.500 0.00 0.00 0.00 3.18
3102 4452 4.082190 TGTCATGAAAACAACGGACCAAAA 60.082 37.500 0.00 0.00 0.00 2.44
3108 4458 5.060506 AGTACATGTCATGAAAACAACGGA 58.939 37.500 19.77 0.00 0.00 4.69
3111 4461 8.076178 AGCTAAAGTACATGTCATGAAAACAAC 58.924 33.333 19.77 7.27 0.00 3.32
3132 4482 2.771943 CAATCCCTCACACCCTAGCTAA 59.228 50.000 0.00 0.00 0.00 3.09
3141 4491 5.004922 TGAAACAAAACAATCCCTCACAC 57.995 39.130 0.00 0.00 0.00 3.82
3182 4533 7.642194 TGCTAACGAAATAAAACACAACTTGAG 59.358 33.333 0.00 0.00 0.00 3.02
3233 4826 5.852282 AGTTTAAGGTTGTCAGTTGCATT 57.148 34.783 0.00 0.00 0.00 3.56
3234 4827 5.127031 ACAAGTTTAAGGTTGTCAGTTGCAT 59.873 36.000 0.00 0.00 30.99 3.96
3329 4923 1.825191 ATGGCGTGGCATGGCTTAG 60.825 57.895 30.03 12.17 0.00 2.18
3372 4966 7.373617 TGATATTATACAGGCAGGAAAGACA 57.626 36.000 0.00 0.00 0.00 3.41
3499 5093 0.317770 CGCCGCATTCACAACAAACT 60.318 50.000 0.00 0.00 0.00 2.66
3500 5094 1.274798 CCGCCGCATTCACAACAAAC 61.275 55.000 0.00 0.00 0.00 2.93
3513 5107 4.403453 GACAATATTATTCATTCCGCCGC 58.597 43.478 0.00 0.00 0.00 6.53
3671 5275 5.874810 GCATGGCATCTAAATATCCTTCGTA 59.125 40.000 0.00 0.00 0.00 3.43
3807 5423 3.243975 GGGAAAAGTACGGAGAAGACACA 60.244 47.826 0.00 0.00 0.00 3.72
3861 5486 1.089920 GATGAAGAACGCATGCACCT 58.910 50.000 19.57 8.07 0.00 4.00
3951 5576 3.177600 ATGAACCGCATGCGTCAC 58.822 55.556 35.55 25.02 35.42 3.67
3959 5584 0.906066 TTAGGGCTACATGAACCGCA 59.094 50.000 0.00 0.00 0.00 5.69
3964 5589 2.361789 GGCGTTTTAGGGCTACATGAA 58.638 47.619 0.00 0.00 0.00 2.57
3985 5610 2.829003 TAGGCAGGAGCGACCGAG 60.829 66.667 0.00 0.00 44.74 4.63
3986 5611 2.829003 CTAGGCAGGAGCGACCGA 60.829 66.667 0.00 0.00 44.74 4.69
3987 5612 3.905678 CCTAGGCAGGAGCGACCG 61.906 72.222 0.00 0.00 45.91 4.79
3988 5613 3.541713 CCCTAGGCAGGAGCGACC 61.542 72.222 2.05 0.00 45.91 4.79
3989 5614 2.760385 ACCCTAGGCAGGAGCGAC 60.760 66.667 2.05 0.00 45.91 5.19
3990 5615 2.759973 CACCCTAGGCAGGAGCGA 60.760 66.667 2.05 0.00 45.91 4.93
3991 5616 2.759973 TCACCCTAGGCAGGAGCG 60.760 66.667 2.05 0.00 45.91 5.03
3992 5617 1.681486 GAGTCACCCTAGGCAGGAGC 61.681 65.000 2.05 0.00 45.91 4.70
3993 5618 1.388065 CGAGTCACCCTAGGCAGGAG 61.388 65.000 2.05 0.00 45.91 3.69
3994 5619 1.379977 CGAGTCACCCTAGGCAGGA 60.380 63.158 2.05 0.00 45.91 3.86
3995 5620 1.379977 TCGAGTCACCCTAGGCAGG 60.380 63.158 2.05 0.00 42.22 4.85
3996 5621 1.388065 CCTCGAGTCACCCTAGGCAG 61.388 65.000 12.31 0.00 0.00 4.85
3997 5622 1.379977 CCTCGAGTCACCCTAGGCA 60.380 63.158 12.31 0.00 0.00 4.75
3998 5623 2.128507 CCCTCGAGTCACCCTAGGC 61.129 68.421 12.31 0.00 0.00 3.93
3999 5624 0.324460 AACCCTCGAGTCACCCTAGG 60.324 60.000 12.31 0.06 0.00 3.02
4000 5625 1.104630 GAACCCTCGAGTCACCCTAG 58.895 60.000 12.31 0.00 0.00 3.02
4001 5626 0.324091 GGAACCCTCGAGTCACCCTA 60.324 60.000 12.31 0.00 0.00 3.53
4002 5627 1.609794 GGAACCCTCGAGTCACCCT 60.610 63.158 12.31 0.00 0.00 4.34
4003 5628 1.605971 GAGGAACCCTCGAGTCACCC 61.606 65.000 12.31 7.32 41.08 4.61
4004 5629 1.891616 GAGGAACCCTCGAGTCACC 59.108 63.158 12.31 9.11 41.08 4.02
4013 5638 3.864983 TTGCGGGAGGAGGAACCCT 62.865 63.158 0.00 0.00 43.57 4.34
4014 5639 3.327404 TTGCGGGAGGAGGAACCC 61.327 66.667 0.00 0.00 42.43 4.11
4015 5640 2.046217 GTTGCGGGAGGAGGAACC 60.046 66.667 0.00 0.00 34.50 3.62
4016 5641 2.046217 GGTTGCGGGAGGAGGAAC 60.046 66.667 0.00 0.00 38.87 3.62
4017 5642 1.710996 TTTGGTTGCGGGAGGAGGAA 61.711 55.000 0.00 0.00 0.00 3.36
4018 5643 2.124507 CTTTGGTTGCGGGAGGAGGA 62.125 60.000 0.00 0.00 0.00 3.71
4019 5644 1.675641 CTTTGGTTGCGGGAGGAGG 60.676 63.158 0.00 0.00 0.00 4.30
4020 5645 2.335712 GCTTTGGTTGCGGGAGGAG 61.336 63.158 0.00 0.00 0.00 3.69
4021 5646 2.282180 GCTTTGGTTGCGGGAGGA 60.282 61.111 0.00 0.00 0.00 3.71
4029 5654 2.222953 CTACGACGGCGCTTTGGTTG 62.223 60.000 12.58 7.21 42.48 3.77
4030 5655 2.025418 CTACGACGGCGCTTTGGTT 61.025 57.895 12.58 0.00 42.48 3.67
4031 5656 2.431942 CTACGACGGCGCTTTGGT 60.432 61.111 12.58 4.44 42.48 3.67
4032 5657 1.952266 GAACTACGACGGCGCTTTGG 61.952 60.000 12.58 0.00 42.48 3.28
4033 5658 1.279527 TGAACTACGACGGCGCTTTG 61.280 55.000 12.58 0.00 42.48 2.77
4034 5659 0.389426 ATGAACTACGACGGCGCTTT 60.389 50.000 12.58 0.00 42.48 3.51
4035 5660 0.801067 GATGAACTACGACGGCGCTT 60.801 55.000 12.58 0.00 42.48 4.68
4036 5661 1.226603 GATGAACTACGACGGCGCT 60.227 57.895 12.58 0.00 42.48 5.92
4037 5662 1.201098 GAGATGAACTACGACGGCGC 61.201 60.000 12.58 0.00 42.48 6.53
4038 5663 0.591741 GGAGATGAACTACGACGGCG 60.592 60.000 10.39 10.39 44.79 6.46
4039 5664 0.739561 AGGAGATGAACTACGACGGC 59.260 55.000 0.00 0.00 33.99 5.68
4040 5665 1.334243 GGAGGAGATGAACTACGACGG 59.666 57.143 0.00 0.00 33.99 4.79
4041 5666 1.334243 GGGAGGAGATGAACTACGACG 59.666 57.143 0.00 0.00 33.99 5.12
4042 5667 1.682323 GGGGAGGAGATGAACTACGAC 59.318 57.143 0.00 0.00 33.99 4.34
4043 5668 1.411216 GGGGGAGGAGATGAACTACGA 60.411 57.143 0.00 0.00 33.99 3.43
4044 5669 1.041437 GGGGGAGGAGATGAACTACG 58.959 60.000 0.00 0.00 33.99 3.51
4045 5670 1.041437 CGGGGGAGGAGATGAACTAC 58.959 60.000 0.00 0.00 0.00 2.73
4046 5671 0.759436 GCGGGGGAGGAGATGAACTA 60.759 60.000 0.00 0.00 0.00 2.24
4047 5672 2.066999 GCGGGGGAGGAGATGAACT 61.067 63.158 0.00 0.00 0.00 3.01
4048 5673 2.506472 GCGGGGGAGGAGATGAAC 59.494 66.667 0.00 0.00 0.00 3.18
4049 5674 3.154473 CGCGGGGGAGGAGATGAA 61.154 66.667 0.00 0.00 0.00 2.57
4050 5675 3.976490 AACGCGGGGGAGGAGATGA 62.976 63.158 12.47 0.00 0.00 2.92
4051 5676 3.470888 AACGCGGGGGAGGAGATG 61.471 66.667 12.47 0.00 0.00 2.90
4052 5677 3.470888 CAACGCGGGGGAGGAGAT 61.471 66.667 12.47 0.00 0.00 2.75
4066 5691 3.435186 GCTTCCTCCAGCGGCAAC 61.435 66.667 1.45 0.00 0.00 4.17
4067 5692 4.722700 GGCTTCCTCCAGCGGCAA 62.723 66.667 1.45 0.00 41.12 4.52
4114 5739 3.984749 GAGAGAGATCCCCGCCGC 61.985 72.222 0.00 0.00 0.00 6.53
4115 5740 3.665226 CGAGAGAGATCCCCGCCG 61.665 72.222 0.00 0.00 0.00 6.46
4116 5741 3.984749 GCGAGAGAGATCCCCGCC 61.985 72.222 0.00 0.00 39.97 6.13
4117 5742 4.335584 CGCGAGAGAGATCCCCGC 62.336 72.222 0.00 0.00 42.11 6.13
4118 5743 3.665226 CCGCGAGAGAGATCCCCG 61.665 72.222 8.23 0.00 0.00 5.73
4119 5744 3.984749 GCCGCGAGAGAGATCCCC 61.985 72.222 8.23 0.00 0.00 4.81
4120 5745 2.485188 GATGCCGCGAGAGAGATCCC 62.485 65.000 8.23 0.00 0.00 3.85
4121 5746 1.080839 GATGCCGCGAGAGAGATCC 60.081 63.158 8.23 0.00 0.00 3.36
4122 5747 1.080839 GGATGCCGCGAGAGAGATC 60.081 63.158 8.23 0.00 0.00 2.75
4123 5748 2.569354 GGGATGCCGCGAGAGAGAT 61.569 63.158 8.23 0.00 0.00 2.75
4124 5749 3.219928 GGGATGCCGCGAGAGAGA 61.220 66.667 8.23 0.00 0.00 3.10
4125 5750 2.790791 AAGGGATGCCGCGAGAGAG 61.791 63.158 8.23 0.00 0.00 3.20
4126 5751 2.759973 AAGGGATGCCGCGAGAGA 60.760 61.111 8.23 0.00 0.00 3.10
4127 5752 2.374830 ATCAAGGGATGCCGCGAGAG 62.375 60.000 8.23 0.00 30.86 3.20
4128 5753 2.369257 GATCAAGGGATGCCGCGAGA 62.369 60.000 8.23 0.00 32.67 4.04
4129 5754 1.958205 GATCAAGGGATGCCGCGAG 60.958 63.158 8.23 0.00 32.67 5.03
4130 5755 2.108976 GATCAAGGGATGCCGCGA 59.891 61.111 8.23 0.00 32.67 5.87
4131 5756 2.109799 AGATCAAGGGATGCCGCG 59.890 61.111 0.00 0.00 32.67 6.46
4132 5757 2.550101 GCAGATCAAGGGATGCCGC 61.550 63.158 0.00 0.00 32.67 6.53
4133 5758 1.153107 TGCAGATCAAGGGATGCCG 60.153 57.895 0.00 0.00 32.67 5.69
4134 5759 0.822532 CCTGCAGATCAAGGGATGCC 60.823 60.000 17.39 0.00 32.67 4.40
4135 5760 1.453762 GCCTGCAGATCAAGGGATGC 61.454 60.000 17.39 1.39 32.67 3.91
4136 5761 1.164662 CGCCTGCAGATCAAGGGATG 61.165 60.000 17.39 0.00 32.67 3.51
4137 5762 1.147824 CGCCTGCAGATCAAGGGAT 59.852 57.895 17.39 0.00 36.13 3.85
4138 5763 2.586245 CGCCTGCAGATCAAGGGA 59.414 61.111 17.39 0.00 0.00 4.20
4139 5764 2.515523 CCGCCTGCAGATCAAGGG 60.516 66.667 17.39 6.13 0.00 3.95
4140 5765 3.207669 GCCGCCTGCAGATCAAGG 61.208 66.667 17.39 11.50 40.77 3.61
4149 5774 2.432972 CCAAATGTTGCCGCCTGC 60.433 61.111 0.00 0.00 41.77 4.85
4150 5775 1.373246 CACCAAATGTTGCCGCCTG 60.373 57.895 0.00 0.00 0.00 4.85
4151 5776 2.573083 CCACCAAATGTTGCCGCCT 61.573 57.895 0.00 0.00 0.00 5.52
4152 5777 2.048316 CCACCAAATGTTGCCGCC 60.048 61.111 0.00 0.00 0.00 6.13
4153 5778 1.080569 CTCCACCAAATGTTGCCGC 60.081 57.895 0.00 0.00 0.00 6.53
4154 5779 1.586028 CCTCCACCAAATGTTGCCG 59.414 57.895 0.00 0.00 0.00 5.69
4155 5780 1.293179 GCCTCCACCAAATGTTGCC 59.707 57.895 0.00 0.00 0.00 4.52
4156 5781 1.293179 GGCCTCCACCAAATGTTGC 59.707 57.895 0.00 0.00 0.00 4.17
4157 5782 1.586028 CGGCCTCCACCAAATGTTG 59.414 57.895 0.00 0.00 0.00 3.33
4158 5783 2.275380 GCGGCCTCCACCAAATGTT 61.275 57.895 0.00 0.00 0.00 2.71
4159 5784 2.676471 GCGGCCTCCACCAAATGT 60.676 61.111 0.00 0.00 0.00 2.71
4160 5785 3.451894 GGCGGCCTCCACCAAATG 61.452 66.667 12.87 0.00 0.00 2.32
4185 5810 3.365291 TACGCCCACCGCACAGATC 62.365 63.158 0.00 0.00 41.76 2.75
4186 5811 3.387091 TACGCCCACCGCACAGAT 61.387 61.111 0.00 0.00 41.76 2.90
4187 5812 4.367023 GTACGCCCACCGCACAGA 62.367 66.667 0.00 0.00 41.76 3.41
4199 5824 4.139234 GAGACCCACCCCGTACGC 62.139 72.222 10.49 0.00 0.00 4.42
4200 5825 3.818787 CGAGACCCACCCCGTACG 61.819 72.222 8.69 8.69 0.00 3.67
4201 5826 3.455469 CCGAGACCCACCCCGTAC 61.455 72.222 0.00 0.00 0.00 3.67
4206 5831 4.754667 GTTCGCCGAGACCCACCC 62.755 72.222 0.00 0.00 0.00 4.61
4212 5837 2.862347 CTACCACCGTTCGCCGAGAC 62.862 65.000 0.00 0.00 39.56 3.36
4213 5838 2.672651 TACCACCGTTCGCCGAGA 60.673 61.111 0.00 0.00 39.56 4.04
4214 5839 2.202570 CTACCACCGTTCGCCGAG 60.203 66.667 0.00 0.00 39.56 4.63
4215 5840 3.751246 CCTACCACCGTTCGCCGA 61.751 66.667 0.00 0.00 39.56 5.54
4217 5842 4.078516 AGCCTACCACCGTTCGCC 62.079 66.667 0.00 0.00 0.00 5.54
4218 5843 2.813908 CAGCCTACCACCGTTCGC 60.814 66.667 0.00 0.00 0.00 4.70
4219 5844 1.736645 CACAGCCTACCACCGTTCG 60.737 63.158 0.00 0.00 0.00 3.95
4220 5845 1.375523 CCACAGCCTACCACCGTTC 60.376 63.158 0.00 0.00 0.00 3.95
4221 5846 2.747686 CCACAGCCTACCACCGTT 59.252 61.111 0.00 0.00 0.00 4.44
4222 5847 3.319198 CCCACAGCCTACCACCGT 61.319 66.667 0.00 0.00 0.00 4.83
4223 5848 4.096003 CCCCACAGCCTACCACCG 62.096 72.222 0.00 0.00 0.00 4.94
4224 5849 1.984288 GATCCCCACAGCCTACCACC 61.984 65.000 0.00 0.00 0.00 4.61
4225 5850 1.527370 GATCCCCACAGCCTACCAC 59.473 63.158 0.00 0.00 0.00 4.16
4226 5851 2.063979 CGATCCCCACAGCCTACCA 61.064 63.158 0.00 0.00 0.00 3.25
4227 5852 2.808206 CCGATCCCCACAGCCTACC 61.808 68.421 0.00 0.00 0.00 3.18
4228 5853 1.760875 TCCGATCCCCACAGCCTAC 60.761 63.158 0.00 0.00 0.00 3.18
4229 5854 1.760875 GTCCGATCCCCACAGCCTA 60.761 63.158 0.00 0.00 0.00 3.93
4230 5855 3.083997 GTCCGATCCCCACAGCCT 61.084 66.667 0.00 0.00 0.00 4.58
4231 5856 4.176752 GGTCCGATCCCCACAGCC 62.177 72.222 0.00 0.00 0.00 4.85
4232 5857 3.083997 AGGTCCGATCCCCACAGC 61.084 66.667 0.00 0.00 0.00 4.40
4233 5858 2.786495 CGAGGTCCGATCCCCACAG 61.786 68.421 0.00 0.00 41.76 3.66
4234 5859 2.758327 CGAGGTCCGATCCCCACA 60.758 66.667 0.00 0.00 41.76 4.17
4235 5860 2.758737 ACGAGGTCCGATCCCCAC 60.759 66.667 0.00 0.00 41.76 4.61
4236 5861 2.441532 GACGAGGTCCGATCCCCA 60.442 66.667 0.00 0.00 41.76 4.96
4237 5862 3.593794 CGACGAGGTCCGATCCCC 61.594 72.222 0.00 0.00 41.76 4.81
4238 5863 3.593794 CCGACGAGGTCCGATCCC 61.594 72.222 0.00 0.00 41.76 3.85
4239 5864 3.593794 CCCGACGAGGTCCGATCC 61.594 72.222 0.00 0.00 41.76 3.36
4240 5865 4.267503 GCCCGACGAGGTCCGATC 62.268 72.222 0.00 0.00 41.76 3.69
4263 5888 4.162690 CACCGACCCTGGCTAGGC 62.163 72.222 11.38 9.85 43.16 3.93
4264 5889 3.470888 CCACCGACCCTGGCTAGG 61.471 72.222 9.64 9.64 44.18 3.02
4265 5890 1.338136 AATCCACCGACCCTGGCTAG 61.338 60.000 0.00 0.00 0.00 3.42
4266 5891 1.306654 AATCCACCGACCCTGGCTA 60.307 57.895 0.00 0.00 0.00 3.93
4267 5892 2.610859 AATCCACCGACCCTGGCT 60.611 61.111 0.00 0.00 0.00 4.75
4268 5893 2.124695 GAATCCACCGACCCTGGC 60.125 66.667 0.00 0.00 0.00 4.85
4269 5894 2.186903 CGAATCCACCGACCCTGG 59.813 66.667 0.00 0.00 0.00 4.45
4270 5895 1.153628 GACGAATCCACCGACCCTG 60.154 63.158 0.00 0.00 0.00 4.45
4271 5896 2.356780 GGACGAATCCACCGACCCT 61.357 63.158 0.00 0.00 45.47 4.34
4272 5897 2.186125 GGACGAATCCACCGACCC 59.814 66.667 0.00 0.00 45.47 4.46
4280 5905 3.139029 GGCCGATATGGACGAATCC 57.861 57.895 0.00 0.00 46.48 3.01
4287 5912 2.505407 CCAATAGATGGGCCGATATGGA 59.495 50.000 4.98 0.00 46.27 3.41
4288 5913 2.923121 CCAATAGATGGGCCGATATGG 58.077 52.381 4.98 6.11 46.27 2.74
4299 5924 4.319046 CGATTTGGACGAAGCCAATAGATG 60.319 45.833 9.28 0.00 46.59 2.90
4300 5925 3.809832 CGATTTGGACGAAGCCAATAGAT 59.190 43.478 9.28 2.29 46.59 1.98
4301 5926 3.118920 TCGATTTGGACGAAGCCAATAGA 60.119 43.478 9.28 7.18 46.59 1.98
4302 5927 3.194861 TCGATTTGGACGAAGCCAATAG 58.805 45.455 9.28 5.51 46.59 1.73
4303 5928 3.194861 CTCGATTTGGACGAAGCCAATA 58.805 45.455 9.28 3.29 46.59 1.90
4304 5929 2.009774 CTCGATTTGGACGAAGCCAAT 58.990 47.619 9.28 2.24 46.59 3.16
4305 5930 1.438651 CTCGATTTGGACGAAGCCAA 58.561 50.000 5.33 5.33 45.77 4.52
4306 5931 0.391130 CCTCGATTTGGACGAAGCCA 60.391 55.000 0.00 0.00 39.23 4.75
4307 5932 0.108329 TCCTCGATTTGGACGAAGCC 60.108 55.000 0.00 0.00 39.23 4.35
4308 5933 1.000145 GTCCTCGATTTGGACGAAGC 59.000 55.000 6.58 0.00 43.55 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.