Multiple sequence alignment - TraesCS3A01G290000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G290000 chr3A 100.000 3635 0 0 1 3635 518908342 518904708 0.000000e+00 6713.0
1 TraesCS3A01G290000 chr3A 88.820 322 27 8 2870 3187 608488391 608488707 1.580000e-103 387.0
2 TraesCS3A01G290000 chr3A 84.848 66 9 1 243 307 490154773 490154708 8.420000e-07 65.8
3 TraesCS3A01G290000 chr3B 91.462 2366 149 27 3 2328 525621693 525619341 0.000000e+00 3201.0
4 TraesCS3A01G290000 chr3B 89.873 395 37 3 2870 3263 801133137 801132745 4.190000e-139 505.0
5 TraesCS3A01G290000 chr3B 83.439 314 32 12 2330 2628 525619303 525618995 1.290000e-69 274.0
6 TraesCS3A01G290000 chr3B 83.505 194 13 4 2682 2859 525613600 525613410 2.900000e-36 163.0
7 TraesCS3A01G290000 chr3D 92.594 1985 79 33 387 2328 399677884 399675925 0.000000e+00 2789.0
8 TraesCS3A01G290000 chr3D 86.000 300 23 3 2330 2629 399675872 399675592 1.640000e-78 303.0
9 TraesCS3A01G290000 chr3D 86.090 266 30 4 5 265 399705780 399705517 2.760000e-71 279.0
10 TraesCS3A01G290000 chr3D 78.397 287 53 6 32 312 610927659 610927376 1.040000e-40 178.0
11 TraesCS3A01G290000 chr3D 82.143 112 19 1 46 157 47080240 47080350 1.070000e-15 95.3
12 TraesCS3A01G290000 chr3D 97.143 35 1 0 133 167 23728975 23729009 3.920000e-05 60.2
13 TraesCS3A01G290000 chr7A 94.384 552 27 3 2876 3425 59434410 59433861 0.000000e+00 845.0
14 TraesCS3A01G290000 chr7A 94.969 318 9 5 3108 3423 643599844 643599532 3.260000e-135 492.0
15 TraesCS3A01G290000 chr7A 79.679 187 28 6 34 216 220405434 220405614 3.810000e-25 126.0
16 TraesCS3A01G290000 chr6B 91.241 411 32 3 2915 3323 562565049 562565457 1.140000e-154 556.0
17 TraesCS3A01G290000 chr6B 83.577 548 74 9 2870 3414 542560872 542561406 1.950000e-137 499.0
18 TraesCS3A01G290000 chr4B 83.837 563 75 12 2870 3424 531582824 531583378 4.160000e-144 521.0
19 TraesCS3A01G290000 chr4B 94.984 319 11 4 3107 3424 627047975 627048289 2.520000e-136 496.0
20 TraesCS3A01G290000 chr4B 82.682 537 85 6 2880 3412 659676706 659676174 1.530000e-128 470.0
21 TraesCS3A01G290000 chr4B 82.738 168 26 3 1 168 434648536 434648372 2.920000e-31 147.0
22 TraesCS3A01G290000 chr2A 96.732 306 10 0 3119 3424 768472003 768472308 9.000000e-141 510.0
23 TraesCS3A01G290000 chr2B 98.929 280 3 0 3143 3422 236455395 236455116 5.420000e-138 501.0
24 TraesCS3A01G290000 chr2B 91.223 319 22 3 2870 3187 651985350 651985663 2.590000e-116 429.0
25 TraesCS3A01G290000 chr2B 87.637 364 45 0 2870 3233 644616373 644616010 1.210000e-114 424.0
26 TraesCS3A01G290000 chr2B 79.553 313 43 15 1 308 364727621 364727325 1.710000e-48 204.0
27 TraesCS3A01G290000 chr5B 97.455 275 7 0 2867 3141 696722744 696723018 1.530000e-128 470.0
28 TraesCS3A01G290000 chr5D 81.587 315 40 14 1 309 565183356 565183658 1.010000e-60 244.0
29 TraesCS3A01G290000 chr2D 79.861 288 36 11 26 307 296855117 296855388 1.330000e-44 191.0
30 TraesCS3A01G290000 chr4A 76.038 313 65 9 3 309 687629575 687629883 1.750000e-33 154.0
31 TraesCS3A01G290000 chrUn 76.568 303 51 11 13 305 275048623 275048915 8.130000e-32 148.0
32 TraesCS3A01G290000 chrUn 76.568 303 51 11 13 305 275056286 275056578 8.130000e-32 148.0
33 TraesCS3A01G290000 chrUn 76.667 300 50 11 16 305 282337893 282337604 8.130000e-32 148.0
34 TraesCS3A01G290000 chrUn 86.207 58 7 1 248 304 9949561 9949504 1.090000e-05 62.1
35 TraesCS3A01G290000 chr5A 80.749 187 26 6 34 216 601193889 601193709 1.760000e-28 137.0
36 TraesCS3A01G290000 chr6A 79.096 177 33 2 1 174 12948309 12948134 6.380000e-23 119.0
37 TraesCS3A01G290000 chr6A 100.000 28 0 0 64 91 15632437 15632410 7.000000e-03 52.8
38 TraesCS3A01G290000 chr1D 72.581 310 64 15 4 297 393684767 393685071 8.370000e-12 82.4
39 TraesCS3A01G290000 chr1A 85.714 49 7 0 256 304 21478066 21478114 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G290000 chr3A 518904708 518908342 3634 True 6713.0 6713 100.0000 1 3635 1 chr3A.!!$R2 3634
1 TraesCS3A01G290000 chr3B 525618995 525621693 2698 True 1737.5 3201 87.4505 3 2628 2 chr3B.!!$R3 2625
2 TraesCS3A01G290000 chr3D 399675592 399677884 2292 True 1546.0 2789 89.2970 387 2629 2 chr3D.!!$R3 2242
3 TraesCS3A01G290000 chr7A 59433861 59434410 549 True 845.0 845 94.3840 2876 3425 1 chr7A.!!$R1 549
4 TraesCS3A01G290000 chr6B 542560872 542561406 534 False 499.0 499 83.5770 2870 3414 1 chr6B.!!$F1 544
5 TraesCS3A01G290000 chr4B 531582824 531583378 554 False 521.0 521 83.8370 2870 3424 1 chr4B.!!$F1 554
6 TraesCS3A01G290000 chr4B 659676174 659676706 532 True 470.0 470 82.6820 2880 3412 1 chr4B.!!$R2 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 667 0.039798 TCGTAGCGTGCGAAGTTTCT 60.040 50.0 0.00 0.00 35.28 2.52 F
654 690 0.247736 AGGCCGTCACATGAAGACTC 59.752 55.0 16.77 10.45 33.89 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2279 2352 0.179100 AGGATGATCACGAACGCCAG 60.179 55.0 0.0 0.0 0.00 4.85 R
2652 2799 0.379669 CACCTCAAGGCGATCATTGC 59.620 55.0 0.0 0.0 39.32 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.002251 CGGAGCTCTGTCGTAGATTCC 60.002 57.143 14.84 10.32 40.67 3.01
22 23 2.025155 GGAGCTCTGTCGTAGATTCCA 58.975 52.381 14.64 0.00 40.67 3.53
23 24 2.427453 GGAGCTCTGTCGTAGATTCCAA 59.573 50.000 14.64 0.00 40.67 3.53
26 27 3.046390 GCTCTGTCGTAGATTCCAATCG 58.954 50.000 0.00 0.00 40.67 3.34
30 31 4.028852 TGTCGTAGATTCCAATCGTCTG 57.971 45.455 0.00 0.00 40.67 3.51
32 33 2.688446 TCGTAGATTCCAATCGTCTGCT 59.312 45.455 0.00 0.00 40.35 4.24
35 36 2.636830 AGATTCCAATCGTCTGCTTGG 58.363 47.619 0.00 0.00 41.70 3.61
50 51 1.536907 TTGGGGCGGTGAGGTTAGA 60.537 57.895 0.00 0.00 0.00 2.10
51 52 1.128809 TTGGGGCGGTGAGGTTAGAA 61.129 55.000 0.00 0.00 0.00 2.10
58 59 2.603560 GCGGTGAGGTTAGAATTTCTCG 59.396 50.000 1.27 0.00 0.00 4.04
66 67 5.178797 AGGTTAGAATTTCTCGTCATGTGG 58.821 41.667 1.27 0.00 0.00 4.17
79 80 1.228245 ATGTGGCGAGCTTTGGTGT 60.228 52.632 0.00 0.00 0.00 4.16
80 81 0.823356 ATGTGGCGAGCTTTGGTGTT 60.823 50.000 0.00 0.00 0.00 3.32
82 83 0.517316 GTGGCGAGCTTTGGTGTTAG 59.483 55.000 0.00 0.00 0.00 2.34
99 100 4.509600 GTGTTAGGTGCTTCAGATCTATGC 59.490 45.833 0.00 0.64 0.00 3.14
101 102 3.472283 AGGTGCTTCAGATCTATGCAG 57.528 47.619 14.20 0.00 34.15 4.41
111 112 3.801050 CAGATCTATGCAGGAGTTCAACG 59.199 47.826 0.00 0.00 0.00 4.10
112 113 2.672961 TCTATGCAGGAGTTCAACGG 57.327 50.000 0.00 0.00 0.00 4.44
129 130 2.105466 GGGCGACGACTACGACTCT 61.105 63.158 0.00 0.00 42.66 3.24
148 149 3.951765 GGGCGCTAGTCCTTAGGT 58.048 61.111 7.64 0.00 39.58 3.08
152 153 0.806492 GCGCTAGTCCTTAGGTGCAC 60.806 60.000 8.80 8.80 35.59 4.57
153 154 0.530744 CGCTAGTCCTTAGGTGCACA 59.469 55.000 20.43 0.00 0.00 4.57
174 175 2.176045 TGCATGAAGACTTCCCGACTA 58.824 47.619 12.66 0.00 0.00 2.59
175 176 2.166459 TGCATGAAGACTTCCCGACTAG 59.834 50.000 12.66 0.00 0.00 2.57
176 177 2.166664 GCATGAAGACTTCCCGACTAGT 59.833 50.000 12.66 0.00 0.00 2.57
177 178 3.735514 GCATGAAGACTTCCCGACTAGTC 60.736 52.174 13.18 13.18 40.82 2.59
178 179 2.444421 TGAAGACTTCCCGACTAGTCC 58.556 52.381 17.23 1.23 41.31 3.85
179 180 2.041350 TGAAGACTTCCCGACTAGTCCT 59.959 50.000 17.23 3.64 41.31 3.85
180 181 2.903375 AGACTTCCCGACTAGTCCTT 57.097 50.000 17.23 0.00 41.31 3.36
197 201 2.907897 CTTAGGTCAAGCCGGCTCCG 62.908 65.000 32.93 24.15 43.70 4.63
218 222 2.167398 TAGGGAAGTGGCGTCAGTGC 62.167 60.000 0.00 0.00 0.00 4.40
227 231 4.640855 CGTCAGTGCCACGTCGGT 62.641 66.667 0.00 0.00 36.97 4.69
228 232 3.036084 GTCAGTGCCACGTCGGTG 61.036 66.667 0.00 0.00 43.99 4.94
236 240 3.103911 CACGTCGGTGGCTCGTTC 61.104 66.667 0.00 0.00 40.58 3.95
239 243 2.432628 GTCGGTGGCTCGTTCTGG 60.433 66.667 1.40 0.00 0.00 3.86
241 245 4.680237 CGGTGGCTCGTTCTGGCA 62.680 66.667 0.00 0.00 37.66 4.92
265 270 1.663135 GTAGTAGTCGTCGGTGGTCTC 59.337 57.143 0.00 0.00 0.00 3.36
276 281 1.777941 GGTGGTCTCGGAATCTAGGT 58.222 55.000 0.00 0.00 0.00 3.08
309 314 7.377766 TCTTATGTTTGAGATGCTTTGTACC 57.622 36.000 0.00 0.00 0.00 3.34
311 316 5.886960 ATGTTTGAGATGCTTTGTACCTC 57.113 39.130 0.00 0.00 0.00 3.85
313 318 5.376625 TGTTTGAGATGCTTTGTACCTCTT 58.623 37.500 0.00 0.00 0.00 2.85
319 340 5.426504 AGATGCTTTGTACCTCTTGATCTG 58.573 41.667 0.00 0.00 0.00 2.90
327 348 6.227298 TGTACCTCTTGATCTGATCCTTTC 57.773 41.667 14.71 0.00 0.00 2.62
328 349 5.721480 TGTACCTCTTGATCTGATCCTTTCA 59.279 40.000 14.71 0.00 0.00 2.69
432 455 4.115199 GCCCCGGGCTGTTCTGAT 62.115 66.667 22.31 0.00 46.69 2.90
443 474 3.181516 GGCTGTTCTGATTAAACGCTCAG 60.182 47.826 0.00 0.00 40.20 3.35
470 501 3.441572 CACTGCCCCTTGAAGATAAACAG 59.558 47.826 0.00 0.00 0.00 3.16
488 519 0.460284 AGAATTCACCGCGCTACAGG 60.460 55.000 5.56 0.65 0.00 4.00
498 529 0.727398 GCGCTACAGGACATCAAACC 59.273 55.000 0.00 0.00 0.00 3.27
500 531 1.751437 GCTACAGGACATCAAACCCC 58.249 55.000 0.00 0.00 0.00 4.95
524 555 1.447838 AGTTACCAGTGCGATGCCG 60.448 57.895 0.00 0.00 39.16 5.69
550 581 0.664466 TTCTGTCACGAGCGAGCTTG 60.664 55.000 10.58 10.58 0.00 4.01
627 662 2.860628 GCCATCGTAGCGTGCGAAG 61.861 63.158 4.63 1.11 41.84 3.79
628 663 1.516386 CCATCGTAGCGTGCGAAGT 60.516 57.895 4.63 0.00 41.84 3.01
631 666 0.989890 ATCGTAGCGTGCGAAGTTTC 59.010 50.000 4.63 0.00 41.84 2.78
632 667 0.039798 TCGTAGCGTGCGAAGTTTCT 60.040 50.000 0.00 0.00 35.28 2.52
639 675 2.260869 TGCGAAGTTTCTGCAGGCC 61.261 57.895 15.13 0.00 33.93 5.19
654 690 0.247736 AGGCCGTCACATGAAGACTC 59.752 55.000 16.77 10.45 33.89 3.36
745 781 3.554692 CGAGACAACGGCATCGGC 61.555 66.667 0.00 0.00 41.39 5.54
746 782 2.434185 GAGACAACGGCATCGGCA 60.434 61.111 0.00 0.00 43.71 5.69
787 833 2.513204 CTGCTACCGCTGCTGCAT 60.513 61.111 16.29 5.52 39.64 3.96
788 834 2.512286 TGCTACCGCTGCTGCATC 60.512 61.111 16.29 0.00 39.64 3.91
789 835 2.202987 GCTACCGCTGCTGCATCT 60.203 61.111 16.29 0.00 39.64 2.90
790 836 2.532256 GCTACCGCTGCTGCATCTG 61.532 63.158 16.29 0.00 39.64 2.90
801 847 2.202905 GCATCTGCTGCGCTCTCT 60.203 61.111 9.73 0.00 41.97 3.10
803 849 2.202905 ATCTGCTGCGCTCTCTGC 60.203 61.111 9.73 5.97 38.57 4.26
843 889 4.543084 GCGCTGATGCCGAAAGCC 62.543 66.667 0.00 0.00 42.71 4.35
853 899 4.016706 CGAAAGCCACCGACCCCT 62.017 66.667 0.00 0.00 0.00 4.79
878 924 4.244802 AAACAACGCACACGCCCG 62.245 61.111 0.00 0.00 45.53 6.13
1007 1055 1.071471 CACCACTCGCTCCACCTTT 59.929 57.895 0.00 0.00 0.00 3.11
1058 1128 3.719883 CTCTGCCTCTGCCTCTGCG 62.720 68.421 0.00 0.00 41.78 5.18
1115 1185 0.398239 CCTCCTCCTCCTGCTCATCA 60.398 60.000 0.00 0.00 0.00 3.07
1447 1520 2.898840 CTCGCCGCGGGTCTACTA 60.899 66.667 29.38 0.00 0.00 1.82
1582 1655 2.202797 CTGGCCGTGGTCATCTCG 60.203 66.667 0.00 0.00 0.00 4.04
1609 1682 2.425592 CACCTCAACCGCCTCACA 59.574 61.111 0.00 0.00 0.00 3.58
1697 1770 3.376935 CTCTCCGGCAACCGCATCT 62.377 63.158 0.00 0.00 46.86 2.90
1764 1837 1.294659 CTCAACCTCAGCTCCAACGC 61.295 60.000 0.00 0.00 0.00 4.84
1867 1940 2.516460 ATCCCGGAGACCGTCTCG 60.516 66.667 19.95 15.16 46.80 4.04
2021 2094 2.357034 GCGCCAGGTTCTTGTCGA 60.357 61.111 0.00 0.00 0.00 4.20
2026 2099 0.895530 CCAGGTTCTTGTCGAGGCTA 59.104 55.000 0.00 0.00 0.00 3.93
2028 2101 1.272490 CAGGTTCTTGTCGAGGCTACA 59.728 52.381 0.00 0.00 0.00 2.74
2291 2364 4.680237 CCTGCCTGGCGTTCGTGA 62.680 66.667 14.98 0.00 0.00 4.35
2297 2370 1.154205 CCTGGCGTTCGTGATCATCC 61.154 60.000 0.00 0.00 0.00 3.51
2505 2637 4.388577 AGCAGGGTATTCCTCTTGTTTT 57.611 40.909 0.00 0.00 46.12 2.43
2506 2638 4.336280 AGCAGGGTATTCCTCTTGTTTTC 58.664 43.478 0.00 0.00 46.12 2.29
2536 2668 6.459024 GCTGGCCAATGTCGTTGTTATTATTA 60.459 38.462 7.01 0.00 36.01 0.98
2551 2698 9.469807 TTGTTATTATTAAGTGTTGCCTTTGTG 57.530 29.630 0.00 0.00 0.00 3.33
2556 2703 1.588667 GTGTTGCCTTTGTGCCGTG 60.589 57.895 0.00 0.00 0.00 4.94
2573 2720 1.390123 CGTGGTCGCATTGTTCTACTG 59.610 52.381 0.00 0.00 0.00 2.74
2574 2721 2.413837 GTGGTCGCATTGTTCTACTGT 58.586 47.619 0.00 0.00 0.00 3.55
2575 2722 3.581755 GTGGTCGCATTGTTCTACTGTA 58.418 45.455 0.00 0.00 0.00 2.74
2576 2723 4.181578 GTGGTCGCATTGTTCTACTGTAT 58.818 43.478 0.00 0.00 0.00 2.29
2577 2724 4.032900 GTGGTCGCATTGTTCTACTGTATG 59.967 45.833 0.00 0.00 0.00 2.39
2578 2725 4.181578 GGTCGCATTGTTCTACTGTATGT 58.818 43.478 0.00 0.00 0.00 2.29
2579 2726 5.105675 TGGTCGCATTGTTCTACTGTATGTA 60.106 40.000 0.00 0.00 0.00 2.29
2634 2781 9.982651 TCAGAAGAGTAAACCAGTTATATATGC 57.017 33.333 0.00 0.00 0.00 3.14
2635 2782 9.764363 CAGAAGAGTAAACCAGTTATATATGCA 57.236 33.333 0.00 0.00 0.00 3.96
2636 2783 9.988815 AGAAGAGTAAACCAGTTATATATGCAG 57.011 33.333 0.00 0.00 0.00 4.41
2637 2784 8.608844 AAGAGTAAACCAGTTATATATGCAGC 57.391 34.615 0.00 0.00 0.00 5.25
2638 2785 7.735917 AGAGTAAACCAGTTATATATGCAGCA 58.264 34.615 0.00 0.00 0.00 4.41
2639 2786 8.378565 AGAGTAAACCAGTTATATATGCAGCAT 58.621 33.333 13.73 13.73 0.00 3.79
2640 2787 8.327941 AGTAAACCAGTTATATATGCAGCATG 57.672 34.615 18.81 0.00 40.87 4.06
2641 2788 6.579666 AAACCAGTTATATATGCAGCATGG 57.420 37.500 18.81 11.78 35.86 3.66
2642 2789 5.503634 ACCAGTTATATATGCAGCATGGA 57.496 39.130 18.81 5.83 44.23 3.41
2643 2790 5.248640 ACCAGTTATATATGCAGCATGGAC 58.751 41.667 18.81 8.83 41.42 4.02
2644 2791 4.637534 CCAGTTATATATGCAGCATGGACC 59.362 45.833 18.81 1.22 41.42 4.46
2645 2792 4.330894 CAGTTATATATGCAGCATGGACCG 59.669 45.833 18.81 0.00 41.42 4.79
2646 2793 4.222810 AGTTATATATGCAGCATGGACCGA 59.777 41.667 18.81 0.00 41.42 4.69
2647 2794 3.920231 ATATATGCAGCATGGACCGAT 57.080 42.857 18.81 4.75 41.42 4.18
2648 2795 1.817357 ATATGCAGCATGGACCGATG 58.183 50.000 18.81 0.00 41.42 3.84
2649 2796 0.469494 TATGCAGCATGGACCGATGT 59.531 50.000 18.81 0.00 41.42 3.06
2650 2797 1.099295 ATGCAGCATGGACCGATGTG 61.099 55.000 7.23 4.89 41.42 3.21
2651 2798 2.475466 GCAGCATGGACCGATGTGG 61.475 63.158 0.00 0.00 39.82 4.17
2652 2799 1.820906 CAGCATGGACCGATGTGGG 60.821 63.158 0.00 0.00 44.64 4.61
2660 2807 3.100545 ACCGATGTGGGCAATGATC 57.899 52.632 0.00 0.00 44.64 2.92
2661 2808 0.815213 ACCGATGTGGGCAATGATCG 60.815 55.000 0.00 0.00 44.64 3.69
2662 2809 1.280746 CGATGTGGGCAATGATCGC 59.719 57.895 0.00 0.00 32.13 4.58
2669 2816 2.028130 GGCAATGATCGCCTTGAGG 58.972 57.895 3.09 0.00 46.56 3.86
2670 2817 0.749454 GGCAATGATCGCCTTGAGGT 60.749 55.000 3.09 0.00 46.56 3.85
2671 2818 0.379669 GCAATGATCGCCTTGAGGTG 59.620 55.000 4.19 4.19 46.72 4.00
2681 2828 3.963428 GCCTTGAGGTGAGTAGAAGAA 57.037 47.619 0.00 0.00 37.57 2.52
2682 2829 3.855858 GCCTTGAGGTGAGTAGAAGAAG 58.144 50.000 0.00 0.00 37.57 2.85
2683 2830 3.368948 GCCTTGAGGTGAGTAGAAGAAGG 60.369 52.174 0.00 0.00 37.57 3.46
2684 2831 3.368948 CCTTGAGGTGAGTAGAAGAAGGC 60.369 52.174 0.00 0.00 0.00 4.35
2685 2832 1.819288 TGAGGTGAGTAGAAGAAGGCG 59.181 52.381 0.00 0.00 0.00 5.52
2686 2833 2.093106 GAGGTGAGTAGAAGAAGGCGA 58.907 52.381 0.00 0.00 0.00 5.54
2687 2834 2.492484 GAGGTGAGTAGAAGAAGGCGAA 59.508 50.000 0.00 0.00 0.00 4.70
2688 2835 2.494073 AGGTGAGTAGAAGAAGGCGAAG 59.506 50.000 0.00 0.00 0.00 3.79
2689 2836 2.231721 GGTGAGTAGAAGAAGGCGAAGT 59.768 50.000 0.00 0.00 0.00 3.01
2690 2837 3.503891 GTGAGTAGAAGAAGGCGAAGTC 58.496 50.000 0.00 0.00 0.00 3.01
2691 2838 2.161808 TGAGTAGAAGAAGGCGAAGTCG 59.838 50.000 0.00 0.00 36.95 4.18
2692 2839 2.419324 GAGTAGAAGAAGGCGAAGTCGA 59.581 50.000 4.59 0.00 43.02 4.20
2693 2840 2.420722 AGTAGAAGAAGGCGAAGTCGAG 59.579 50.000 4.59 0.00 43.02 4.04
2694 2841 1.249407 AGAAGAAGGCGAAGTCGAGT 58.751 50.000 4.59 0.00 43.02 4.18
2695 2842 1.068194 AGAAGAAGGCGAAGTCGAGTG 60.068 52.381 4.59 0.00 43.02 3.51
2696 2843 0.038159 AAGAAGGCGAAGTCGAGTGG 60.038 55.000 4.59 0.00 43.02 4.00
2697 2844 0.894184 AGAAGGCGAAGTCGAGTGGA 60.894 55.000 4.59 0.00 43.02 4.02
2698 2845 0.456995 GAAGGCGAAGTCGAGTGGAG 60.457 60.000 4.59 0.00 43.02 3.86
2699 2846 0.894184 AAGGCGAAGTCGAGTGGAGA 60.894 55.000 4.59 0.00 43.02 3.71
2700 2847 1.137825 GGCGAAGTCGAGTGGAGAG 59.862 63.158 4.59 0.00 43.02 3.20
2701 2848 1.306642 GGCGAAGTCGAGTGGAGAGA 61.307 60.000 4.59 0.00 43.02 3.10
2702 2849 0.098025 GCGAAGTCGAGTGGAGAGAG 59.902 60.000 4.59 0.00 43.02 3.20
2703 2850 1.444836 CGAAGTCGAGTGGAGAGAGT 58.555 55.000 0.00 0.00 43.02 3.24
2704 2851 1.129624 CGAAGTCGAGTGGAGAGAGTG 59.870 57.143 0.00 0.00 43.02 3.51
2705 2852 2.428491 GAAGTCGAGTGGAGAGAGTGA 58.572 52.381 0.00 0.00 0.00 3.41
2706 2853 2.799126 AGTCGAGTGGAGAGAGTGAT 57.201 50.000 0.00 0.00 0.00 3.06
2707 2854 2.364632 AGTCGAGTGGAGAGAGTGATG 58.635 52.381 0.00 0.00 0.00 3.07
2708 2855 2.026729 AGTCGAGTGGAGAGAGTGATGA 60.027 50.000 0.00 0.00 0.00 2.92
2709 2856 2.354510 GTCGAGTGGAGAGAGTGATGAG 59.645 54.545 0.00 0.00 0.00 2.90
2710 2857 2.237392 TCGAGTGGAGAGAGTGATGAGA 59.763 50.000 0.00 0.00 0.00 3.27
2711 2858 2.613595 CGAGTGGAGAGAGTGATGAGAG 59.386 54.545 0.00 0.00 0.00 3.20
2712 2859 2.358898 GAGTGGAGAGAGTGATGAGAGC 59.641 54.545 0.00 0.00 0.00 4.09
2713 2860 2.025037 AGTGGAGAGAGTGATGAGAGCT 60.025 50.000 0.00 0.00 0.00 4.09
2714 2861 2.099592 GTGGAGAGAGTGATGAGAGCTG 59.900 54.545 0.00 0.00 0.00 4.24
2715 2862 1.682854 GGAGAGAGTGATGAGAGCTGG 59.317 57.143 0.00 0.00 0.00 4.85
2716 2863 2.653726 GAGAGAGTGATGAGAGCTGGA 58.346 52.381 0.00 0.00 0.00 3.86
2717 2864 2.358898 GAGAGAGTGATGAGAGCTGGAC 59.641 54.545 0.00 0.00 0.00 4.02
2718 2865 2.098614 GAGAGTGATGAGAGCTGGACA 58.901 52.381 0.00 0.00 0.00 4.02
2719 2866 2.495270 GAGAGTGATGAGAGCTGGACAA 59.505 50.000 0.00 0.00 0.00 3.18
2720 2867 2.496871 AGAGTGATGAGAGCTGGACAAG 59.503 50.000 0.00 0.00 0.00 3.16
2721 2868 2.495270 GAGTGATGAGAGCTGGACAAGA 59.505 50.000 0.00 0.00 0.00 3.02
2722 2869 3.106054 AGTGATGAGAGCTGGACAAGAT 58.894 45.455 0.00 0.00 0.00 2.40
2723 2870 3.518705 AGTGATGAGAGCTGGACAAGATT 59.481 43.478 0.00 0.00 0.00 2.40
2724 2871 4.713814 AGTGATGAGAGCTGGACAAGATTA 59.286 41.667 0.00 0.00 0.00 1.75
2725 2872 5.049167 GTGATGAGAGCTGGACAAGATTAG 58.951 45.833 0.00 0.00 0.00 1.73
2726 2873 4.713814 TGATGAGAGCTGGACAAGATTAGT 59.286 41.667 0.00 0.00 0.00 2.24
2727 2874 4.462508 TGAGAGCTGGACAAGATTAGTG 57.537 45.455 0.00 0.00 0.00 2.74
2728 2875 3.194062 GAGAGCTGGACAAGATTAGTGC 58.806 50.000 0.00 0.00 0.00 4.40
2729 2876 2.836981 AGAGCTGGACAAGATTAGTGCT 59.163 45.455 0.00 0.00 0.00 4.40
2730 2877 3.262915 AGAGCTGGACAAGATTAGTGCTT 59.737 43.478 0.00 0.00 0.00 3.91
2731 2878 3.604582 AGCTGGACAAGATTAGTGCTTC 58.395 45.455 0.00 0.00 0.00 3.86
2732 2879 3.008375 AGCTGGACAAGATTAGTGCTTCA 59.992 43.478 0.00 0.00 0.00 3.02
2733 2880 3.373439 GCTGGACAAGATTAGTGCTTCAG 59.627 47.826 0.00 0.00 0.00 3.02
2734 2881 4.573900 CTGGACAAGATTAGTGCTTCAGT 58.426 43.478 0.00 0.00 0.00 3.41
2735 2882 4.569943 TGGACAAGATTAGTGCTTCAGTC 58.430 43.478 0.00 0.00 0.00 3.51
2736 2883 4.284490 TGGACAAGATTAGTGCTTCAGTCT 59.716 41.667 0.00 0.00 0.00 3.24
2737 2884 4.867608 GGACAAGATTAGTGCTTCAGTCTC 59.132 45.833 0.00 0.00 0.00 3.36
2738 2885 4.826556 ACAAGATTAGTGCTTCAGTCTCC 58.173 43.478 0.00 0.00 0.00 3.71
2739 2886 4.530161 ACAAGATTAGTGCTTCAGTCTCCT 59.470 41.667 0.00 0.00 0.00 3.69
2740 2887 5.012561 ACAAGATTAGTGCTTCAGTCTCCTT 59.987 40.000 0.00 0.00 0.00 3.36
2741 2888 5.753721 AGATTAGTGCTTCAGTCTCCTTT 57.246 39.130 0.00 0.00 0.00 3.11
2742 2889 5.486526 AGATTAGTGCTTCAGTCTCCTTTG 58.513 41.667 0.00 0.00 0.00 2.77
2743 2890 4.689612 TTAGTGCTTCAGTCTCCTTTGT 57.310 40.909 0.00 0.00 0.00 2.83
2744 2891 3.567478 AGTGCTTCAGTCTCCTTTGTT 57.433 42.857 0.00 0.00 0.00 2.83
2745 2892 4.689612 AGTGCTTCAGTCTCCTTTGTTA 57.310 40.909 0.00 0.00 0.00 2.41
2746 2893 4.636249 AGTGCTTCAGTCTCCTTTGTTAG 58.364 43.478 0.00 0.00 0.00 2.34
2747 2894 4.345257 AGTGCTTCAGTCTCCTTTGTTAGA 59.655 41.667 0.00 0.00 0.00 2.10
2748 2895 4.449405 GTGCTTCAGTCTCCTTTGTTAGAC 59.551 45.833 0.00 0.00 42.02 2.59
2755 2902 5.593183 GTCTCCTTTGTTAGACTTTTCCG 57.407 43.478 0.00 0.00 39.24 4.30
2756 2903 5.055144 GTCTCCTTTGTTAGACTTTTCCGT 58.945 41.667 0.00 0.00 39.24 4.69
2757 2904 5.050295 GTCTCCTTTGTTAGACTTTTCCGTG 60.050 44.000 0.00 0.00 39.24 4.94
2758 2905 4.131596 TCCTTTGTTAGACTTTTCCGTGG 58.868 43.478 0.00 0.00 0.00 4.94
2759 2906 4.131596 CCTTTGTTAGACTTTTCCGTGGA 58.868 43.478 0.00 0.00 0.00 4.02
2760 2907 4.024302 CCTTTGTTAGACTTTTCCGTGGAC 60.024 45.833 0.00 0.00 0.00 4.02
2761 2908 4.411256 TTGTTAGACTTTTCCGTGGACT 57.589 40.909 0.00 0.00 0.00 3.85
2762 2909 3.724374 TGTTAGACTTTTCCGTGGACTG 58.276 45.455 0.00 0.00 0.00 3.51
2763 2910 3.064931 GTTAGACTTTTCCGTGGACTGG 58.935 50.000 0.00 0.00 0.00 4.00
2764 2911 0.250338 AGACTTTTCCGTGGACTGGC 60.250 55.000 0.00 0.00 0.00 4.85
2765 2912 1.228154 ACTTTTCCGTGGACTGGCC 60.228 57.895 0.00 0.00 37.10 5.36
2766 2913 2.281208 TTTTCCGTGGACTGGCCG 60.281 61.111 0.00 0.00 40.66 6.13
2767 2914 3.835790 TTTTCCGTGGACTGGCCGG 62.836 63.158 11.02 11.02 43.03 6.13
2772 2919 3.712907 GTGGACTGGCCGGCCTAA 61.713 66.667 43.34 25.85 40.66 2.69
2773 2920 2.690881 TGGACTGGCCGGCCTAAT 60.691 61.111 43.34 29.33 40.66 1.73
2774 2921 2.305607 TGGACTGGCCGGCCTAATT 61.306 57.895 43.34 25.70 40.66 1.40
2775 2922 1.076995 GGACTGGCCGGCCTAATTT 60.077 57.895 43.34 23.86 36.94 1.82
2776 2923 0.683179 GGACTGGCCGGCCTAATTTT 60.683 55.000 43.34 22.05 36.94 1.82
2777 2924 1.409101 GGACTGGCCGGCCTAATTTTA 60.409 52.381 43.34 22.68 36.94 1.52
2778 2925 1.947456 GACTGGCCGGCCTAATTTTAG 59.053 52.381 43.34 31.89 36.94 1.85
2779 2926 1.283905 ACTGGCCGGCCTAATTTTAGT 59.716 47.619 43.34 32.56 36.94 2.24
2780 2927 2.291346 ACTGGCCGGCCTAATTTTAGTT 60.291 45.455 43.34 18.85 36.94 2.24
2781 2928 2.758423 CTGGCCGGCCTAATTTTAGTTT 59.242 45.455 43.34 0.00 36.94 2.66
2782 2929 3.949113 CTGGCCGGCCTAATTTTAGTTTA 59.051 43.478 43.34 19.57 36.94 2.01
2783 2930 3.949113 TGGCCGGCCTAATTTTAGTTTAG 59.051 43.478 43.34 0.00 36.94 1.85
2784 2931 3.317149 GGCCGGCCTAATTTTAGTTTAGG 59.683 47.826 38.76 5.33 45.69 2.69
2793 2940 6.967199 CCTAATTTTAGTTTAGGCTTGAAGCG 59.033 38.462 11.48 0.00 43.62 4.68
2794 2941 5.959618 ATTTTAGTTTAGGCTTGAAGCGT 57.040 34.783 16.93 16.93 43.62 5.07
2795 2942 7.443259 AATTTTAGTTTAGGCTTGAAGCGTA 57.557 32.000 14.82 14.82 43.62 4.42
2796 2943 5.851047 TTTAGTTTAGGCTTGAAGCGTAC 57.149 39.130 17.99 11.20 43.62 3.67
2797 2944 3.679824 AGTTTAGGCTTGAAGCGTACT 57.320 42.857 17.99 13.17 43.62 2.73
2798 2945 3.586892 AGTTTAGGCTTGAAGCGTACTC 58.413 45.455 17.99 13.58 43.62 2.59
2799 2946 2.667473 TTAGGCTTGAAGCGTACTCC 57.333 50.000 17.99 0.00 43.62 3.85
2800 2947 0.454600 TAGGCTTGAAGCGTACTCCG 59.545 55.000 14.82 0.00 43.62 4.63
2809 2956 2.960129 CGTACTCCGCCGCCAATC 60.960 66.667 0.00 0.00 0.00 2.67
2810 2957 2.960129 GTACTCCGCCGCCAATCG 60.960 66.667 0.00 0.00 38.08 3.34
2811 2958 4.884257 TACTCCGCCGCCAATCGC 62.884 66.667 0.00 0.00 36.73 4.58
2820 2967 2.021931 GCCAATCGCGCTTTCTCG 59.978 61.111 5.56 0.00 0.00 4.04
2829 2976 3.127533 GCTTTCTCGCACGGCCAT 61.128 61.111 2.24 0.00 0.00 4.40
2830 2977 3.093278 CTTTCTCGCACGGCCATC 58.907 61.111 2.24 0.00 0.00 3.51
2831 2978 2.435938 TTTCTCGCACGGCCATCC 60.436 61.111 2.24 0.00 0.00 3.51
2832 2979 3.969250 TTTCTCGCACGGCCATCCC 62.969 63.158 2.24 0.00 0.00 3.85
2837 2984 4.504596 GCACGGCCATCCCCATCA 62.505 66.667 2.24 0.00 0.00 3.07
2838 2985 2.517414 CACGGCCATCCCCATCAT 59.483 61.111 2.24 0.00 0.00 2.45
2839 2986 1.900016 CACGGCCATCCCCATCATG 60.900 63.158 2.24 0.00 0.00 3.07
2840 2987 2.987547 CGGCCATCCCCATCATGC 60.988 66.667 2.24 0.00 0.00 4.06
2841 2988 2.199257 GGCCATCCCCATCATGCA 59.801 61.111 0.00 0.00 0.00 3.96
2842 2989 1.229082 GGCCATCCCCATCATGCAT 60.229 57.895 0.00 0.00 0.00 3.96
2843 2990 1.541310 GGCCATCCCCATCATGCATG 61.541 60.000 21.07 21.07 0.00 4.06
2844 2991 1.972198 CCATCCCCATCATGCATGC 59.028 57.895 22.25 11.82 0.00 4.06
2845 2992 0.830023 CCATCCCCATCATGCATGCA 60.830 55.000 25.04 25.04 0.00 3.96
2846 2993 0.603065 CATCCCCATCATGCATGCAG 59.397 55.000 26.69 17.32 0.00 4.41
2847 2994 0.481128 ATCCCCATCATGCATGCAGA 59.519 50.000 26.69 21.70 0.00 4.26
2848 2995 0.259356 TCCCCATCATGCATGCAGAA 59.741 50.000 26.69 16.47 0.00 3.02
2849 2996 0.387929 CCCCATCATGCATGCAGAAC 59.612 55.000 26.69 0.00 0.00 3.01
2850 2997 0.030235 CCCATCATGCATGCAGAACG 59.970 55.000 26.69 13.96 0.00 3.95
2851 2998 0.594028 CCATCATGCATGCAGAACGC 60.594 55.000 26.69 0.00 42.89 4.84
2860 3007 2.980233 GCAGAACGCAGCTTGGGT 60.980 61.111 0.00 0.00 45.92 4.51
2861 3008 1.671054 GCAGAACGCAGCTTGGGTA 60.671 57.895 6.35 0.00 43.03 3.69
2862 3009 1.639298 GCAGAACGCAGCTTGGGTAG 61.639 60.000 6.35 2.79 43.03 3.18
2898 3045 6.829298 TGGTCATAGTGGAGAGTAACTTAGAG 59.171 42.308 0.00 0.00 0.00 2.43
2938 3085 9.933240 ATGTTACTACTCTATGTTACTACCCTT 57.067 33.333 0.00 0.00 0.00 3.95
2962 3109 8.541899 TTATAGTGGGAAGTGTCATATGTGTA 57.458 34.615 1.90 0.00 0.00 2.90
3011 3158 6.486320 TGTCTTGTAGACTCATTTTGCATTGA 59.514 34.615 8.18 0.00 45.27 2.57
3084 3231 5.647658 CCTCATTAACTACTTGCCACATCAA 59.352 40.000 0.00 0.00 0.00 2.57
3116 3263 7.505258 TGCTTATGTGGCATCTATGTTACTAA 58.495 34.615 0.00 0.00 34.56 2.24
3117 3264 8.156820 TGCTTATGTGGCATCTATGTTACTAAT 58.843 33.333 0.00 0.00 34.56 1.73
3141 3288 5.860941 ATGTTACTCTCACTATGACCAGG 57.139 43.478 0.00 0.00 0.00 4.45
3144 3291 2.383855 ACTCTCACTATGACCAGGCTC 58.616 52.381 0.00 0.00 0.00 4.70
3298 3446 6.000840 TCATTATGCATTGGAAACCGCTATA 58.999 36.000 3.54 0.00 0.00 1.31
3420 3568 0.755686 CTCCCACTATGACCAGCCTC 59.244 60.000 0.00 0.00 0.00 4.70
3425 3573 2.700371 CCACTATGACCAGCCTCATACA 59.300 50.000 0.00 0.00 32.86 2.29
3426 3574 3.493350 CCACTATGACCAGCCTCATACAC 60.493 52.174 0.00 0.00 32.86 2.90
3427 3575 2.362397 ACTATGACCAGCCTCATACACG 59.638 50.000 0.00 0.00 32.86 4.49
3428 3576 0.465705 ATGACCAGCCTCATACACGG 59.534 55.000 0.00 0.00 0.00 4.94
3429 3577 0.613572 TGACCAGCCTCATACACGGA 60.614 55.000 0.00 0.00 0.00 4.69
3430 3578 0.179108 GACCAGCCTCATACACGGAC 60.179 60.000 0.00 0.00 0.00 4.79
3431 3579 1.144057 CCAGCCTCATACACGGACC 59.856 63.158 0.00 0.00 0.00 4.46
3432 3580 1.226974 CAGCCTCATACACGGACCG 60.227 63.158 13.61 13.61 0.00 4.79
3433 3581 2.106332 GCCTCATACACGGACCGG 59.894 66.667 20.00 9.81 0.00 5.28
3434 3582 2.718073 GCCTCATACACGGACCGGT 61.718 63.158 20.00 6.92 0.00 5.28
3435 3583 1.436336 CCTCATACACGGACCGGTC 59.564 63.158 27.04 27.04 0.00 4.79
3436 3584 1.436336 CTCATACACGGACCGGTCC 59.564 63.158 39.19 39.19 46.18 4.46
3437 3585 2.012902 CTCATACACGGACCGGTCCC 62.013 65.000 41.24 26.21 46.96 4.46
3438 3586 2.056223 CATACACGGACCGGTCCCT 61.056 63.158 41.24 30.40 46.96 4.20
3439 3587 1.755783 ATACACGGACCGGTCCCTC 60.756 63.158 41.24 21.79 46.96 4.30
3440 3588 2.220786 ATACACGGACCGGTCCCTCT 62.221 60.000 41.24 27.15 46.96 3.69
3441 3589 2.826777 TACACGGACCGGTCCCTCTC 62.827 65.000 41.24 21.06 46.96 3.20
3442 3590 4.755507 ACGGACCGGTCCCTCTCC 62.756 72.222 41.24 21.52 46.96 3.71
3444 3592 4.755507 GGACCGGTCCCTCTCCGT 62.756 72.222 39.24 0.00 45.63 4.69
3445 3593 2.273449 GACCGGTCCCTCTCCGTA 59.727 66.667 24.75 0.00 45.63 4.02
3446 3594 2.044551 ACCGGTCCCTCTCCGTAC 60.045 66.667 0.00 0.00 45.63 3.67
3447 3595 2.274760 CCGGTCCCTCTCCGTACT 59.725 66.667 0.00 0.00 45.63 2.73
3448 3596 1.823041 CCGGTCCCTCTCCGTACTC 60.823 68.421 0.00 0.00 45.63 2.59
3449 3597 1.823041 CGGTCCCTCTCCGTACTCC 60.823 68.421 0.00 0.00 42.62 3.85
3450 3598 1.614160 GGTCCCTCTCCGTACTCCT 59.386 63.158 0.00 0.00 0.00 3.69
3451 3599 0.466007 GGTCCCTCTCCGTACTCCTC 60.466 65.000 0.00 0.00 0.00 3.71
3452 3600 0.814812 GTCCCTCTCCGTACTCCTCG 60.815 65.000 0.00 0.00 0.00 4.63
3453 3601 2.188161 CCCTCTCCGTACTCCTCGC 61.188 68.421 0.00 0.00 0.00 5.03
3454 3602 1.451567 CCTCTCCGTACTCCTCGCA 60.452 63.158 0.00 0.00 0.00 5.10
3455 3603 1.030488 CCTCTCCGTACTCCTCGCAA 61.030 60.000 0.00 0.00 0.00 4.85
3456 3604 0.099082 CTCTCCGTACTCCTCGCAAC 59.901 60.000 0.00 0.00 0.00 4.17
3457 3605 0.607217 TCTCCGTACTCCTCGCAACA 60.607 55.000 0.00 0.00 0.00 3.33
3458 3606 0.456312 CTCCGTACTCCTCGCAACAC 60.456 60.000 0.00 0.00 0.00 3.32
3459 3607 1.800315 CCGTACTCCTCGCAACACG 60.800 63.158 0.00 0.00 45.62 4.49
3468 3616 2.500369 CGCAACACGATGCACAGC 60.500 61.111 11.75 0.00 46.76 4.40
3469 3617 2.949106 GCAACACGATGCACAGCT 59.051 55.556 0.00 0.00 45.70 4.24
3470 3618 1.625759 CGCAACACGATGCACAGCTA 61.626 55.000 11.75 0.00 46.76 3.32
3471 3619 0.095935 GCAACACGATGCACAGCTAG 59.904 55.000 0.00 0.00 45.70 3.42
3472 3620 0.095935 CAACACGATGCACAGCTAGC 59.904 55.000 6.62 6.62 0.00 3.42
3473 3621 0.036952 AACACGATGCACAGCTAGCT 60.037 50.000 12.68 12.68 0.00 3.32
3484 3632 2.825836 GCTAGCTGCGGCATTGGT 60.826 61.111 21.93 0.00 41.70 3.67
3485 3633 2.828128 GCTAGCTGCGGCATTGGTC 61.828 63.158 21.93 0.00 41.70 4.02
3492 3640 4.151417 CGGCATTGGTCGCTTTTG 57.849 55.556 0.00 0.00 34.18 2.44
3493 3641 1.578926 CGGCATTGGTCGCTTTTGA 59.421 52.632 0.00 0.00 34.18 2.69
3494 3642 0.454957 CGGCATTGGTCGCTTTTGAG 60.455 55.000 0.00 0.00 34.18 3.02
3495 3643 0.598065 GGCATTGGTCGCTTTTGAGT 59.402 50.000 0.00 0.00 0.00 3.41
3496 3644 1.000274 GGCATTGGTCGCTTTTGAGTT 60.000 47.619 0.00 0.00 0.00 3.01
3497 3645 2.053627 GCATTGGTCGCTTTTGAGTTG 58.946 47.619 0.00 0.00 0.00 3.16
3498 3646 2.053627 CATTGGTCGCTTTTGAGTTGC 58.946 47.619 0.00 0.00 0.00 4.17
3502 3650 3.819393 CGCTTTTGAGTTGCGCTG 58.181 55.556 9.73 0.00 43.08 5.18
3503 3651 2.359791 CGCTTTTGAGTTGCGCTGC 61.360 57.895 9.73 0.48 43.08 5.25
3504 3652 2.018324 GCTTTTGAGTTGCGCTGCC 61.018 57.895 9.73 0.00 0.00 4.85
3505 3653 1.727022 CTTTTGAGTTGCGCTGCCG 60.727 57.895 9.73 0.00 37.57 5.69
3521 3669 3.741476 CGCTTCTGGCAAGGGCAC 61.741 66.667 7.53 0.00 43.71 5.01
3522 3670 3.376918 GCTTCTGGCAAGGGCACC 61.377 66.667 2.78 0.00 46.14 5.01
3540 3688 3.340814 ACCGCAGTGATCTCATCTTTT 57.659 42.857 0.00 0.00 0.00 2.27
3541 3689 3.265791 ACCGCAGTGATCTCATCTTTTC 58.734 45.455 0.00 0.00 0.00 2.29
3542 3690 3.264947 CCGCAGTGATCTCATCTTTTCA 58.735 45.455 0.00 0.00 0.00 2.69
3543 3691 3.063180 CCGCAGTGATCTCATCTTTTCAC 59.937 47.826 0.00 0.00 38.97 3.18
3544 3692 3.241900 CGCAGTGATCTCATCTTTTCACG 60.242 47.826 0.00 0.00 42.51 4.35
3545 3693 3.063180 GCAGTGATCTCATCTTTTCACGG 59.937 47.826 0.00 0.00 42.51 4.94
3546 3694 4.248859 CAGTGATCTCATCTTTTCACGGT 58.751 43.478 0.00 0.00 42.51 4.83
3547 3695 5.410924 CAGTGATCTCATCTTTTCACGGTA 58.589 41.667 0.00 0.00 42.51 4.02
3548 3696 5.289675 CAGTGATCTCATCTTTTCACGGTAC 59.710 44.000 0.00 0.00 42.51 3.34
3549 3697 4.567159 GTGATCTCATCTTTTCACGGTACC 59.433 45.833 0.16 0.16 30.29 3.34
3550 3698 4.466370 TGATCTCATCTTTTCACGGTACCT 59.534 41.667 10.90 0.00 0.00 3.08
3551 3699 4.451629 TCTCATCTTTTCACGGTACCTC 57.548 45.455 10.90 0.00 0.00 3.85
3552 3700 3.119602 TCTCATCTTTTCACGGTACCTCG 60.120 47.826 10.90 0.00 0.00 4.63
3553 3701 2.559668 TCATCTTTTCACGGTACCTCGT 59.440 45.455 10.90 0.17 44.91 4.18
3554 3702 3.006110 TCATCTTTTCACGGTACCTCGTT 59.994 43.478 10.90 0.00 41.86 3.85
3555 3703 2.746269 TCTTTTCACGGTACCTCGTTG 58.254 47.619 10.90 1.94 41.86 4.10
3556 3704 2.361757 TCTTTTCACGGTACCTCGTTGA 59.638 45.455 10.90 4.40 41.86 3.18
3557 3705 2.427232 TTTCACGGTACCTCGTTGAG 57.573 50.000 10.90 0.00 41.86 3.02
3558 3706 1.608055 TTCACGGTACCTCGTTGAGA 58.392 50.000 10.90 0.00 41.86 3.27
3559 3707 0.877071 TCACGGTACCTCGTTGAGAC 59.123 55.000 10.90 0.00 41.86 3.36
3568 3716 2.050351 CGTTGAGACGCTGACGGT 60.050 61.111 0.00 0.00 46.04 4.83
3569 3717 1.208358 CGTTGAGACGCTGACGGTA 59.792 57.895 0.00 0.00 46.04 4.02
3570 3718 0.386352 CGTTGAGACGCTGACGGTAA 60.386 55.000 0.00 0.00 46.04 2.85
3571 3719 1.731424 CGTTGAGACGCTGACGGTAAT 60.731 52.381 0.00 0.00 46.04 1.89
3572 3720 1.918609 GTTGAGACGCTGACGGTAATC 59.081 52.381 0.00 0.00 46.04 1.75
3573 3721 1.170442 TGAGACGCTGACGGTAATCA 58.830 50.000 0.00 0.00 46.04 2.57
3574 3722 1.749063 TGAGACGCTGACGGTAATCAT 59.251 47.619 0.00 0.00 46.04 2.45
3575 3723 2.946990 TGAGACGCTGACGGTAATCATA 59.053 45.455 0.00 0.00 46.04 2.15
3576 3724 3.242969 TGAGACGCTGACGGTAATCATAC 60.243 47.826 0.00 0.00 46.04 2.39
3577 3725 2.686405 AGACGCTGACGGTAATCATACA 59.314 45.455 0.00 0.00 46.04 2.29
3578 3726 3.129813 AGACGCTGACGGTAATCATACAA 59.870 43.478 0.00 0.00 46.04 2.41
3579 3727 4.049186 GACGCTGACGGTAATCATACAAT 58.951 43.478 0.00 0.00 46.04 2.71
3580 3728 3.802139 ACGCTGACGGTAATCATACAATG 59.198 43.478 0.00 0.00 46.04 2.82
3581 3729 3.362986 CGCTGACGGTAATCATACAATGC 60.363 47.826 0.00 0.00 33.45 3.56
3582 3730 3.362986 GCTGACGGTAATCATACAATGCG 60.363 47.826 0.00 0.00 33.45 4.73
3583 3731 4.048241 TGACGGTAATCATACAATGCGA 57.952 40.909 0.00 0.00 33.45 5.10
3584 3732 4.627058 TGACGGTAATCATACAATGCGAT 58.373 39.130 0.00 0.00 33.45 4.58
3585 3733 4.684242 TGACGGTAATCATACAATGCGATC 59.316 41.667 0.00 0.00 33.45 3.69
3586 3734 4.883083 ACGGTAATCATACAATGCGATCT 58.117 39.130 0.00 0.00 33.45 2.75
3587 3735 5.297547 ACGGTAATCATACAATGCGATCTT 58.702 37.500 0.00 0.00 33.45 2.40
3588 3736 5.177511 ACGGTAATCATACAATGCGATCTTG 59.822 40.000 0.00 0.00 33.45 3.02
3589 3737 5.177511 CGGTAATCATACAATGCGATCTTGT 59.822 40.000 4.47 4.47 39.93 3.16
3590 3738 6.364976 CGGTAATCATACAATGCGATCTTGTA 59.635 38.462 8.09 8.09 41.78 2.41
3591 3739 7.510630 GGTAATCATACAATGCGATCTTGTAC 58.489 38.462 7.88 0.00 40.73 2.90
3592 3740 5.829233 ATCATACAATGCGATCTTGTACG 57.171 39.130 7.88 1.72 40.73 3.67
3593 3741 8.083335 GTAATCATACAATGCGATCTTGTACGC 61.083 40.741 7.88 0.00 40.73 4.42
3597 3745 3.972803 GCGATCTTGTACGCGCGG 61.973 66.667 35.22 16.11 44.91 6.46
3598 3746 2.578713 CGATCTTGTACGCGCGGT 60.579 61.111 35.22 21.38 0.00 5.68
3599 3747 2.156446 CGATCTTGTACGCGCGGTT 61.156 57.895 35.22 17.16 0.00 4.44
3600 3748 1.629504 GATCTTGTACGCGCGGTTC 59.370 57.895 35.22 22.53 0.00 3.62
3601 3749 0.801067 GATCTTGTACGCGCGGTTCT 60.801 55.000 35.22 15.90 0.00 3.01
3602 3750 0.452987 ATCTTGTACGCGCGGTTCTA 59.547 50.000 35.22 14.70 0.00 2.10
3603 3751 0.454957 TCTTGTACGCGCGGTTCTAC 60.455 55.000 35.22 25.58 0.00 2.59
3604 3752 1.726845 CTTGTACGCGCGGTTCTACG 61.727 60.000 35.22 11.25 0.00 3.51
3614 3762 1.666054 CGGTTCTACGCTCCTACTCT 58.334 55.000 0.00 0.00 0.00 3.24
3615 3763 2.831333 CGGTTCTACGCTCCTACTCTA 58.169 52.381 0.00 0.00 0.00 2.43
3616 3764 2.543430 CGGTTCTACGCTCCTACTCTAC 59.457 54.545 0.00 0.00 0.00 2.59
3617 3765 3.740764 CGGTTCTACGCTCCTACTCTACT 60.741 52.174 0.00 0.00 0.00 2.57
3618 3766 3.809279 GGTTCTACGCTCCTACTCTACTC 59.191 52.174 0.00 0.00 0.00 2.59
3619 3767 3.749665 TCTACGCTCCTACTCTACTCC 57.250 52.381 0.00 0.00 0.00 3.85
3620 3768 3.307506 TCTACGCTCCTACTCTACTCCT 58.692 50.000 0.00 0.00 0.00 3.69
3621 3769 2.335316 ACGCTCCTACTCTACTCCTG 57.665 55.000 0.00 0.00 0.00 3.86
3622 3770 1.560611 ACGCTCCTACTCTACTCCTGT 59.439 52.381 0.00 0.00 0.00 4.00
3623 3771 2.026075 ACGCTCCTACTCTACTCCTGTT 60.026 50.000 0.00 0.00 0.00 3.16
3624 3772 3.018149 CGCTCCTACTCTACTCCTGTTT 58.982 50.000 0.00 0.00 0.00 2.83
3625 3773 4.197750 CGCTCCTACTCTACTCCTGTTTA 58.802 47.826 0.00 0.00 0.00 2.01
3626 3774 4.639310 CGCTCCTACTCTACTCCTGTTTAA 59.361 45.833 0.00 0.00 0.00 1.52
3627 3775 5.220892 CGCTCCTACTCTACTCCTGTTTAAG 60.221 48.000 0.00 0.00 0.00 1.85
3628 3776 5.887035 GCTCCTACTCTACTCCTGTTTAAGA 59.113 44.000 0.00 0.00 0.00 2.10
3629 3777 6.038936 GCTCCTACTCTACTCCTGTTTAAGAG 59.961 46.154 0.00 0.00 39.65 2.85
3630 3778 5.887035 TCCTACTCTACTCCTGTTTAAGAGC 59.113 44.000 0.00 0.00 37.75 4.09
3631 3779 5.652891 CCTACTCTACTCCTGTTTAAGAGCA 59.347 44.000 0.00 0.00 37.75 4.26
3632 3780 6.153000 CCTACTCTACTCCTGTTTAAGAGCAA 59.847 42.308 0.00 0.00 37.75 3.91
3633 3781 5.785243 ACTCTACTCCTGTTTAAGAGCAAC 58.215 41.667 0.00 0.00 37.75 4.17
3634 3782 5.540719 ACTCTACTCCTGTTTAAGAGCAACT 59.459 40.000 0.00 0.00 37.75 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.002251 GGAATCTACGACAGAGCTCCG 60.002 57.143 10.93 9.80 36.48 4.63
21 22 2.753966 CGCCCCAAGCAGACGATTG 61.754 63.158 0.00 0.00 44.04 2.67
22 23 2.436646 CGCCCCAAGCAGACGATT 60.437 61.111 0.00 0.00 44.04 3.34
23 24 4.473520 CCGCCCCAAGCAGACGAT 62.474 66.667 0.00 0.00 44.04 3.73
26 27 4.329545 TCACCGCCCCAAGCAGAC 62.330 66.667 0.00 0.00 44.04 3.51
30 31 3.262448 TAACCTCACCGCCCCAAGC 62.262 63.158 0.00 0.00 38.52 4.01
32 33 1.128809 TTCTAACCTCACCGCCCCAA 61.129 55.000 0.00 0.00 0.00 4.12
35 36 2.014857 GAAATTCTAACCTCACCGCCC 58.985 52.381 0.00 0.00 0.00 6.13
50 51 2.093306 TCGCCACATGACGAGAAATT 57.907 45.000 0.00 0.00 33.69 1.82
51 52 3.832704 TCGCCACATGACGAGAAAT 57.167 47.368 0.00 0.00 33.69 2.17
58 59 1.237285 ACCAAAGCTCGCCACATGAC 61.237 55.000 0.00 0.00 0.00 3.06
66 67 0.517316 CACCTAACACCAAAGCTCGC 59.483 55.000 0.00 0.00 0.00 5.03
70 71 1.953686 TGAAGCACCTAACACCAAAGC 59.046 47.619 0.00 0.00 0.00 3.51
79 80 4.202295 CCTGCATAGATCTGAAGCACCTAA 60.202 45.833 5.18 0.00 0.00 2.69
80 81 3.323115 CCTGCATAGATCTGAAGCACCTA 59.677 47.826 5.18 0.00 0.00 3.08
82 83 2.103771 TCCTGCATAGATCTGAAGCACC 59.896 50.000 5.18 0.00 0.00 5.01
99 100 2.027625 GTCGCCCGTTGAACTCCTG 61.028 63.158 0.00 0.00 0.00 3.86
101 102 3.110178 CGTCGCCCGTTGAACTCC 61.110 66.667 0.00 0.00 0.00 3.85
111 112 0.807667 TAGAGTCGTAGTCGTCGCCC 60.808 60.000 0.00 0.00 38.33 6.13
112 113 0.576328 CTAGAGTCGTAGTCGTCGCC 59.424 60.000 0.00 0.00 38.33 5.54
124 125 0.179012 AGGACTAGCGCCCTAGAGTC 60.179 60.000 12.38 9.51 43.07 3.36
126 127 2.156098 CTAAGGACTAGCGCCCTAGAG 58.844 57.143 12.38 0.81 43.07 2.43
129 130 0.554792 ACCTAAGGACTAGCGCCCTA 59.445 55.000 2.29 0.00 31.36 3.53
152 153 1.667724 GTCGGGAAGTCTTCATGCATG 59.332 52.381 21.07 21.07 0.00 4.06
153 154 1.556911 AGTCGGGAAGTCTTCATGCAT 59.443 47.619 14.49 0.00 0.00 3.96
159 160 2.725637 AGGACTAGTCGGGAAGTCTTC 58.274 52.381 16.56 3.80 41.53 2.87
160 161 2.903375 AGGACTAGTCGGGAAGTCTT 57.097 50.000 16.56 0.00 41.53 3.01
161 162 2.903375 AAGGACTAGTCGGGAAGTCT 57.097 50.000 16.56 3.42 41.53 3.24
174 175 1.900545 GCCGGCTTGACCTAAGGACT 61.901 60.000 22.15 0.00 36.87 3.85
175 176 1.449778 GCCGGCTTGACCTAAGGAC 60.450 63.158 22.15 0.00 36.87 3.85
176 177 1.612442 AGCCGGCTTGACCTAAGGA 60.612 57.895 27.08 0.00 36.87 3.36
177 178 1.153349 GAGCCGGCTTGACCTAAGG 60.153 63.158 33.34 0.00 36.87 2.69
178 179 1.153349 GGAGCCGGCTTGACCTAAG 60.153 63.158 33.34 0.00 39.49 2.18
179 180 2.987125 GGAGCCGGCTTGACCTAA 59.013 61.111 33.34 0.00 35.61 2.69
180 181 3.458163 CGGAGCCGGCTTGACCTA 61.458 66.667 33.34 0.00 35.61 3.08
197 201 0.824759 ACTGACGCCACTTCCCTATC 59.175 55.000 0.00 0.00 0.00 2.08
211 215 3.036084 CACCGACGTGGCACTGAC 61.036 66.667 16.72 8.70 43.94 3.51
220 224 3.292936 AGAACGAGCCACCGACGT 61.293 61.111 0.00 0.00 41.97 4.34
227 231 3.889134 CTGCTGCCAGAACGAGCCA 62.889 63.158 0.00 0.00 41.77 4.75
228 232 2.507110 TACTGCTGCCAGAACGAGCC 62.507 60.000 0.00 0.00 41.77 4.70
236 240 0.811915 ACGACTACTACTGCTGCCAG 59.188 55.000 0.00 0.00 44.80 4.85
239 243 0.248134 CCGACGACTACTACTGCTGC 60.248 60.000 0.00 0.00 0.00 5.25
241 245 1.085091 CACCGACGACTACTACTGCT 58.915 55.000 0.00 0.00 0.00 4.24
395 418 5.198965 GGGCATCTTCATGGATAATGCTAT 58.801 41.667 16.85 0.00 41.82 2.97
405 428 2.203394 CCCGGGGCATCTTCATGG 60.203 66.667 14.71 0.00 0.00 3.66
429 452 5.390885 GCAGTGAATTCTGAGCGTTTAATCA 60.391 40.000 7.05 0.00 37.61 2.57
432 455 3.188460 GGCAGTGAATTCTGAGCGTTTAA 59.812 43.478 7.05 0.00 37.61 1.52
443 474 2.795329 TCTTCAAGGGGCAGTGAATTC 58.205 47.619 0.00 0.00 33.45 2.17
470 501 0.459585 TCCTGTAGCGCGGTGAATTC 60.460 55.000 23.02 0.00 0.00 2.17
488 519 0.676782 CTGGGTCGGGGTTTGATGTC 60.677 60.000 0.00 0.00 0.00 3.06
498 529 1.295423 CACTGGTAACTGGGTCGGG 59.705 63.158 0.00 0.00 40.36 5.14
500 531 1.736645 CGCACTGGTAACTGGGTCG 60.737 63.158 0.00 0.00 41.77 4.79
524 555 1.609840 GCTCGTGACAGAACAGCGAC 61.610 60.000 0.00 0.00 0.00 5.19
627 662 1.237285 ATGTGACGGCCTGCAGAAAC 61.237 55.000 17.39 3.85 0.00 2.78
628 663 1.073025 ATGTGACGGCCTGCAGAAA 59.927 52.632 17.39 0.00 0.00 2.52
631 666 1.642037 CTTCATGTGACGGCCTGCAG 61.642 60.000 6.78 6.78 0.00 4.41
632 667 1.672030 CTTCATGTGACGGCCTGCA 60.672 57.895 0.00 0.00 0.00 4.41
639 675 0.987715 CTGCGAGTCTTCATGTGACG 59.012 55.000 13.06 0.00 39.24 4.35
673 709 3.349927 TGTCAAATGCTTCCATGAGAGG 58.650 45.455 0.00 0.00 0.00 3.69
741 777 3.151710 CTGGGGTATCCGTGCCGA 61.152 66.667 0.00 0.00 38.76 5.54
742 778 3.151710 TCTGGGGTATCCGTGCCG 61.152 66.667 0.00 0.00 38.76 5.69
743 779 2.311688 CTGTCTGGGGTATCCGTGCC 62.312 65.000 0.00 0.00 38.76 5.01
744 780 1.144057 CTGTCTGGGGTATCCGTGC 59.856 63.158 0.00 0.00 38.76 5.34
745 781 1.144057 GCTGTCTGGGGTATCCGTG 59.856 63.158 0.00 0.00 38.76 4.94
746 782 2.064581 GGCTGTCTGGGGTATCCGT 61.065 63.158 0.00 0.00 38.76 4.69
821 867 2.456594 TTTCGGCATCAGCGCACAAC 62.457 55.000 11.47 0.00 43.41 3.32
825 871 3.803082 GCTTTCGGCATCAGCGCA 61.803 61.111 11.47 0.00 43.41 6.09
826 872 4.543084 GGCTTTCGGCATCAGCGC 62.543 66.667 0.00 0.00 44.01 5.92
853 899 3.143515 TGCGTTGTTTGGGCAGCA 61.144 55.556 0.00 0.00 32.07 4.41
1007 1055 0.536460 GGAGCACGGGAAAGGTTTCA 60.536 55.000 4.89 0.00 38.92 2.69
1036 1084 4.079850 AGGCAGAGGCAGAGCACG 62.080 66.667 0.00 0.00 43.71 5.34
1037 1085 2.125188 GAGGCAGAGGCAGAGCAC 60.125 66.667 0.00 0.00 43.71 4.40
1038 1086 2.284478 AGAGGCAGAGGCAGAGCA 60.284 61.111 0.00 0.00 43.71 4.26
1039 1087 2.187424 CAGAGGCAGAGGCAGAGC 59.813 66.667 0.00 0.00 43.71 4.09
1040 1088 2.187424 GCAGAGGCAGAGGCAGAG 59.813 66.667 0.00 0.00 43.71 3.35
1041 1089 3.767806 CGCAGAGGCAGAGGCAGA 61.768 66.667 0.00 0.00 43.71 4.26
1444 1517 1.115467 CGGTGCAGGAGAAGGATAGT 58.885 55.000 0.00 0.00 0.00 2.12
1447 1520 2.586792 GCGGTGCAGGAGAAGGAT 59.413 61.111 0.00 0.00 0.00 3.24
1582 1655 1.244019 GGTTGAGGTGGTCCATGTGC 61.244 60.000 0.00 0.00 35.89 4.57
1609 1682 3.384467 CGGATAGGTTGGCATTGGAAATT 59.616 43.478 0.00 0.00 0.00 1.82
1747 1820 3.257933 GCGTTGGAGCTGAGGTTG 58.742 61.111 0.00 0.00 0.00 3.77
1784 1857 0.391661 ATGAGGTCACCGATGTGTGC 60.392 55.000 0.00 0.00 43.26 4.57
2021 2094 1.842381 GCCCTGAACACCTGTAGCCT 61.842 60.000 0.00 0.00 0.00 4.58
2026 2099 4.643387 GCCGCCCTGAACACCTGT 62.643 66.667 0.00 0.00 0.00 4.00
2279 2352 0.179100 AGGATGATCACGAACGCCAG 60.179 55.000 0.00 0.00 0.00 4.85
2291 2364 0.689080 AGGCAGACGACCAGGATGAT 60.689 55.000 0.00 0.00 39.69 2.45
2297 2370 2.125753 GCAGAGGCAGACGACCAG 60.126 66.667 0.00 0.00 40.72 4.00
2317 2390 2.612972 CCAACCTCGTTATCTGCACACT 60.613 50.000 0.00 0.00 0.00 3.55
2444 2575 8.949953 TCTTCGTTGTATTTTTCGTCATTTTTC 58.050 29.630 0.00 0.00 0.00 2.29
2505 2637 1.851021 CGACATTGGCCAGCAAACGA 61.851 55.000 5.11 0.00 0.00 3.85
2506 2638 1.442520 CGACATTGGCCAGCAAACG 60.443 57.895 5.11 6.29 0.00 3.60
2536 2668 1.319614 ACGGCACAAAGGCAACACTT 61.320 50.000 0.00 0.00 44.47 3.16
2551 2698 1.017177 TAGAACAATGCGACCACGGC 61.017 55.000 0.00 0.00 40.15 5.68
2556 2703 4.181578 ACATACAGTAGAACAATGCGACC 58.818 43.478 0.00 0.00 0.00 4.79
2589 2736 4.696877 TCTGAATTTGTGATACTGCAGTGG 59.303 41.667 29.57 0.00 0.00 4.00
2621 2768 4.637534 GGTCCATGCTGCATATATAACTGG 59.362 45.833 15.78 11.37 0.00 4.00
2629 2776 1.072806 ACATCGGTCCATGCTGCATAT 59.927 47.619 15.78 0.87 0.00 1.78
2630 2777 0.469494 ACATCGGTCCATGCTGCATA 59.531 50.000 15.78 0.00 0.00 3.14
2631 2778 1.099295 CACATCGGTCCATGCTGCAT 61.099 55.000 9.81 9.81 0.00 3.96
2632 2779 1.746239 CACATCGGTCCATGCTGCA 60.746 57.895 4.13 4.13 0.00 4.41
2633 2780 2.475466 CCACATCGGTCCATGCTGC 61.475 63.158 0.00 0.00 0.00 5.25
2634 2781 1.820906 CCCACATCGGTCCATGCTG 60.821 63.158 0.00 0.00 0.00 4.41
2635 2782 2.591753 CCCACATCGGTCCATGCT 59.408 61.111 0.00 0.00 0.00 3.79
2636 2783 3.211963 GCCCACATCGGTCCATGC 61.212 66.667 0.00 0.00 0.00 4.06
2637 2784 0.752743 ATTGCCCACATCGGTCCATG 60.753 55.000 0.00 0.00 0.00 3.66
2638 2785 0.752743 CATTGCCCACATCGGTCCAT 60.753 55.000 0.00 0.00 0.00 3.41
2639 2786 1.378382 CATTGCCCACATCGGTCCA 60.378 57.895 0.00 0.00 0.00 4.02
2640 2787 0.466189 ATCATTGCCCACATCGGTCC 60.466 55.000 0.00 0.00 0.00 4.46
2641 2788 0.947244 GATCATTGCCCACATCGGTC 59.053 55.000 0.00 0.00 0.00 4.79
2642 2789 0.815213 CGATCATTGCCCACATCGGT 60.815 55.000 0.00 0.00 35.54 4.69
2643 2790 1.944035 CGATCATTGCCCACATCGG 59.056 57.895 0.00 0.00 35.54 4.18
2644 2791 1.280746 GCGATCATTGCCCACATCG 59.719 57.895 0.00 0.00 40.89 3.84
2652 2799 0.379669 CACCTCAAGGCGATCATTGC 59.620 55.000 0.00 0.00 39.32 3.56
2653 2800 1.938577 CTCACCTCAAGGCGATCATTG 59.061 52.381 0.00 0.00 39.32 2.82
2654 2801 1.556911 ACTCACCTCAAGGCGATCATT 59.443 47.619 0.00 0.00 39.32 2.57
2655 2802 1.198713 ACTCACCTCAAGGCGATCAT 58.801 50.000 0.00 0.00 39.32 2.45
2656 2803 1.751351 CTACTCACCTCAAGGCGATCA 59.249 52.381 0.00 0.00 39.32 2.92
2657 2804 2.025155 TCTACTCACCTCAAGGCGATC 58.975 52.381 0.00 0.00 39.32 3.69
2658 2805 2.145397 TCTACTCACCTCAAGGCGAT 57.855 50.000 0.00 0.00 39.32 4.58
2659 2806 1.819288 CTTCTACTCACCTCAAGGCGA 59.181 52.381 0.00 0.00 39.32 5.54
2660 2807 1.819288 TCTTCTACTCACCTCAAGGCG 59.181 52.381 0.00 0.00 39.32 5.52
2661 2808 3.368948 CCTTCTTCTACTCACCTCAAGGC 60.369 52.174 0.00 0.00 39.32 4.35
2662 2809 3.368948 GCCTTCTTCTACTCACCTCAAGG 60.369 52.174 0.00 0.00 42.17 3.61
2663 2810 3.674682 CGCCTTCTTCTACTCACCTCAAG 60.675 52.174 0.00 0.00 0.00 3.02
2664 2811 2.231478 CGCCTTCTTCTACTCACCTCAA 59.769 50.000 0.00 0.00 0.00 3.02
2665 2812 1.819288 CGCCTTCTTCTACTCACCTCA 59.181 52.381 0.00 0.00 0.00 3.86
2666 2813 2.093106 TCGCCTTCTTCTACTCACCTC 58.907 52.381 0.00 0.00 0.00 3.85
2667 2814 2.217510 TCGCCTTCTTCTACTCACCT 57.782 50.000 0.00 0.00 0.00 4.00
2668 2815 2.231721 ACTTCGCCTTCTTCTACTCACC 59.768 50.000 0.00 0.00 0.00 4.02
2669 2816 3.503891 GACTTCGCCTTCTTCTACTCAC 58.496 50.000 0.00 0.00 0.00 3.51
2670 2817 2.161808 CGACTTCGCCTTCTTCTACTCA 59.838 50.000 0.00 0.00 0.00 3.41
2671 2818 2.419324 TCGACTTCGCCTTCTTCTACTC 59.581 50.000 0.00 0.00 39.60 2.59
2672 2819 2.420722 CTCGACTTCGCCTTCTTCTACT 59.579 50.000 0.00 0.00 39.60 2.57
2673 2820 2.162008 ACTCGACTTCGCCTTCTTCTAC 59.838 50.000 0.00 0.00 39.60 2.59
2674 2821 2.161808 CACTCGACTTCGCCTTCTTCTA 59.838 50.000 0.00 0.00 39.60 2.10
2675 2822 1.068194 CACTCGACTTCGCCTTCTTCT 60.068 52.381 0.00 0.00 39.60 2.85
2676 2823 1.341606 CACTCGACTTCGCCTTCTTC 58.658 55.000 0.00 0.00 39.60 2.87
2677 2824 0.038159 CCACTCGACTTCGCCTTCTT 60.038 55.000 0.00 0.00 39.60 2.52
2678 2825 0.894184 TCCACTCGACTTCGCCTTCT 60.894 55.000 0.00 0.00 39.60 2.85
2679 2826 0.456995 CTCCACTCGACTTCGCCTTC 60.457 60.000 0.00 0.00 39.60 3.46
2680 2827 0.894184 TCTCCACTCGACTTCGCCTT 60.894 55.000 0.00 0.00 39.60 4.35
2681 2828 1.303398 TCTCCACTCGACTTCGCCT 60.303 57.895 0.00 0.00 39.60 5.52
2682 2829 1.137825 CTCTCCACTCGACTTCGCC 59.862 63.158 0.00 0.00 39.60 5.54
2683 2830 0.098025 CTCTCTCCACTCGACTTCGC 59.902 60.000 0.00 0.00 39.60 4.70
2684 2831 1.129624 CACTCTCTCCACTCGACTTCG 59.870 57.143 0.00 0.00 41.45 3.79
2685 2832 2.428491 TCACTCTCTCCACTCGACTTC 58.572 52.381 0.00 0.00 0.00 3.01
2686 2833 2.570415 TCACTCTCTCCACTCGACTT 57.430 50.000 0.00 0.00 0.00 3.01
2687 2834 2.026729 TCATCACTCTCTCCACTCGACT 60.027 50.000 0.00 0.00 0.00 4.18
2688 2835 2.354510 CTCATCACTCTCTCCACTCGAC 59.645 54.545 0.00 0.00 0.00 4.20
2689 2836 2.237392 TCTCATCACTCTCTCCACTCGA 59.763 50.000 0.00 0.00 0.00 4.04
2690 2837 2.613595 CTCTCATCACTCTCTCCACTCG 59.386 54.545 0.00 0.00 0.00 4.18
2691 2838 2.358898 GCTCTCATCACTCTCTCCACTC 59.641 54.545 0.00 0.00 0.00 3.51
2692 2839 2.025037 AGCTCTCATCACTCTCTCCACT 60.025 50.000 0.00 0.00 0.00 4.00
2693 2840 2.099592 CAGCTCTCATCACTCTCTCCAC 59.900 54.545 0.00 0.00 0.00 4.02
2694 2841 2.377073 CAGCTCTCATCACTCTCTCCA 58.623 52.381 0.00 0.00 0.00 3.86
2695 2842 1.682854 CCAGCTCTCATCACTCTCTCC 59.317 57.143 0.00 0.00 0.00 3.71
2696 2843 2.358898 GTCCAGCTCTCATCACTCTCTC 59.641 54.545 0.00 0.00 0.00 3.20
2697 2844 2.291475 TGTCCAGCTCTCATCACTCTCT 60.291 50.000 0.00 0.00 0.00 3.10
2698 2845 2.098614 TGTCCAGCTCTCATCACTCTC 58.901 52.381 0.00 0.00 0.00 3.20
2699 2846 2.228545 TGTCCAGCTCTCATCACTCT 57.771 50.000 0.00 0.00 0.00 3.24
2700 2847 2.495270 TCTTGTCCAGCTCTCATCACTC 59.505 50.000 0.00 0.00 0.00 3.51
2701 2848 2.533916 TCTTGTCCAGCTCTCATCACT 58.466 47.619 0.00 0.00 0.00 3.41
2702 2849 3.540314 ATCTTGTCCAGCTCTCATCAC 57.460 47.619 0.00 0.00 0.00 3.06
2703 2850 4.713814 ACTAATCTTGTCCAGCTCTCATCA 59.286 41.667 0.00 0.00 0.00 3.07
2704 2851 5.049167 CACTAATCTTGTCCAGCTCTCATC 58.951 45.833 0.00 0.00 0.00 2.92
2705 2852 4.682859 GCACTAATCTTGTCCAGCTCTCAT 60.683 45.833 0.00 0.00 0.00 2.90
2706 2853 3.368843 GCACTAATCTTGTCCAGCTCTCA 60.369 47.826 0.00 0.00 0.00 3.27
2707 2854 3.118811 AGCACTAATCTTGTCCAGCTCTC 60.119 47.826 0.00 0.00 0.00 3.20
2708 2855 2.836981 AGCACTAATCTTGTCCAGCTCT 59.163 45.455 0.00 0.00 0.00 4.09
2709 2856 3.258971 AGCACTAATCTTGTCCAGCTC 57.741 47.619 0.00 0.00 0.00 4.09
2710 2857 3.008375 TGAAGCACTAATCTTGTCCAGCT 59.992 43.478 0.00 0.00 0.00 4.24
2711 2858 3.338249 TGAAGCACTAATCTTGTCCAGC 58.662 45.455 0.00 0.00 0.00 4.85
2712 2859 4.573900 ACTGAAGCACTAATCTTGTCCAG 58.426 43.478 0.00 0.00 0.00 3.86
2713 2860 4.284490 AGACTGAAGCACTAATCTTGTCCA 59.716 41.667 0.00 0.00 0.00 4.02
2714 2861 4.826556 AGACTGAAGCACTAATCTTGTCC 58.173 43.478 0.00 0.00 0.00 4.02
2715 2862 4.867608 GGAGACTGAAGCACTAATCTTGTC 59.132 45.833 0.00 0.00 0.00 3.18
2716 2863 4.530161 AGGAGACTGAAGCACTAATCTTGT 59.470 41.667 0.00 0.00 41.13 3.16
2717 2864 5.083533 AGGAGACTGAAGCACTAATCTTG 57.916 43.478 0.00 0.00 41.13 3.02
2718 2865 5.753721 AAGGAGACTGAAGCACTAATCTT 57.246 39.130 0.00 0.00 42.68 2.40
2719 2866 5.012561 ACAAAGGAGACTGAAGCACTAATCT 59.987 40.000 0.00 0.00 42.68 2.40
2720 2867 5.241662 ACAAAGGAGACTGAAGCACTAATC 58.758 41.667 0.00 0.00 42.68 1.75
2721 2868 5.234466 ACAAAGGAGACTGAAGCACTAAT 57.766 39.130 0.00 0.00 42.68 1.73
2722 2869 4.689612 ACAAAGGAGACTGAAGCACTAA 57.310 40.909 0.00 0.00 42.68 2.24
2723 2870 4.689612 AACAAAGGAGACTGAAGCACTA 57.310 40.909 0.00 0.00 42.68 2.74
2724 2871 3.567478 AACAAAGGAGACTGAAGCACT 57.433 42.857 0.00 0.00 42.68 4.40
2725 2872 4.449405 GTCTAACAAAGGAGACTGAAGCAC 59.551 45.833 0.00 0.00 42.68 4.40
2726 2873 4.632153 GTCTAACAAAGGAGACTGAAGCA 58.368 43.478 0.00 0.00 42.68 3.91
2733 2880 5.050295 CACGGAAAAGTCTAACAAAGGAGAC 60.050 44.000 0.00 0.00 42.06 3.36
2734 2881 5.054477 CACGGAAAAGTCTAACAAAGGAGA 58.946 41.667 0.00 0.00 0.00 3.71
2735 2882 4.213482 CCACGGAAAAGTCTAACAAAGGAG 59.787 45.833 0.00 0.00 0.00 3.69
2736 2883 4.131596 CCACGGAAAAGTCTAACAAAGGA 58.868 43.478 0.00 0.00 0.00 3.36
2737 2884 4.024302 GTCCACGGAAAAGTCTAACAAAGG 60.024 45.833 0.00 0.00 0.00 3.11
2738 2885 4.814771 AGTCCACGGAAAAGTCTAACAAAG 59.185 41.667 0.00 0.00 0.00 2.77
2739 2886 4.573201 CAGTCCACGGAAAAGTCTAACAAA 59.427 41.667 0.00 0.00 0.00 2.83
2740 2887 4.124238 CAGTCCACGGAAAAGTCTAACAA 58.876 43.478 0.00 0.00 0.00 2.83
2741 2888 3.493699 CCAGTCCACGGAAAAGTCTAACA 60.494 47.826 0.00 0.00 0.00 2.41
2742 2889 3.064931 CCAGTCCACGGAAAAGTCTAAC 58.935 50.000 0.00 0.00 0.00 2.34
2743 2890 2.549349 GCCAGTCCACGGAAAAGTCTAA 60.549 50.000 0.00 0.00 0.00 2.10
2744 2891 1.001633 GCCAGTCCACGGAAAAGTCTA 59.998 52.381 0.00 0.00 0.00 2.59
2745 2892 0.250338 GCCAGTCCACGGAAAAGTCT 60.250 55.000 0.00 0.00 0.00 3.24
2746 2893 1.235281 GGCCAGTCCACGGAAAAGTC 61.235 60.000 0.00 0.00 34.01 3.01
2747 2894 1.228154 GGCCAGTCCACGGAAAAGT 60.228 57.895 0.00 0.00 34.01 2.66
2748 2895 2.325082 CGGCCAGTCCACGGAAAAG 61.325 63.158 2.24 0.00 34.01 2.27
2749 2896 2.281208 CGGCCAGTCCACGGAAAA 60.281 61.111 2.24 0.00 34.01 2.29
2755 2902 2.552231 AATTAGGCCGGCCAGTCCAC 62.552 60.000 45.13 18.64 38.92 4.02
2756 2903 1.858739 AAATTAGGCCGGCCAGTCCA 61.859 55.000 45.13 24.59 38.92 4.02
2757 2904 0.683179 AAAATTAGGCCGGCCAGTCC 60.683 55.000 45.13 20.27 38.92 3.85
2758 2905 1.947456 CTAAAATTAGGCCGGCCAGTC 59.053 52.381 45.13 20.70 38.92 3.51
2759 2906 1.283905 ACTAAAATTAGGCCGGCCAGT 59.716 47.619 45.13 33.31 38.92 4.00
2760 2907 2.052782 ACTAAAATTAGGCCGGCCAG 57.947 50.000 45.13 32.63 38.92 4.85
2761 2908 2.517998 AACTAAAATTAGGCCGGCCA 57.482 45.000 45.13 28.44 38.92 5.36
2762 2909 3.317149 CCTAAACTAAAATTAGGCCGGCC 59.683 47.826 39.29 39.29 42.05 6.13
2763 2910 4.563337 CCTAAACTAAAATTAGGCCGGC 57.437 45.455 21.18 21.18 42.05 6.13
2769 2916 7.527457 ACGCTTCAAGCCTAAACTAAAATTAG 58.473 34.615 3.08 0.00 38.18 1.73
2770 2917 7.443259 ACGCTTCAAGCCTAAACTAAAATTA 57.557 32.000 3.08 0.00 38.18 1.40
2771 2918 6.327279 ACGCTTCAAGCCTAAACTAAAATT 57.673 33.333 3.08 0.00 38.18 1.82
2772 2919 5.959618 ACGCTTCAAGCCTAAACTAAAAT 57.040 34.783 3.08 0.00 38.18 1.82
2773 2920 5.993441 AGTACGCTTCAAGCCTAAACTAAAA 59.007 36.000 3.08 0.00 38.18 1.52
2774 2921 5.544650 AGTACGCTTCAAGCCTAAACTAAA 58.455 37.500 3.08 0.00 38.18 1.85
2775 2922 5.143376 AGTACGCTTCAAGCCTAAACTAA 57.857 39.130 3.08 0.00 38.18 2.24
2776 2923 4.381292 GGAGTACGCTTCAAGCCTAAACTA 60.381 45.833 3.08 0.00 38.18 2.24
2777 2924 3.586892 GAGTACGCTTCAAGCCTAAACT 58.413 45.455 3.08 2.04 38.18 2.66
2778 2925 2.671888 GGAGTACGCTTCAAGCCTAAAC 59.328 50.000 3.08 0.00 38.18 2.01
2779 2926 2.673043 CGGAGTACGCTTCAAGCCTAAA 60.673 50.000 3.08 0.00 38.18 1.85
2780 2927 1.135199 CGGAGTACGCTTCAAGCCTAA 60.135 52.381 3.08 0.00 38.18 2.69
2781 2928 0.454600 CGGAGTACGCTTCAAGCCTA 59.545 55.000 3.08 0.00 38.18 3.93
2782 2929 1.215647 CGGAGTACGCTTCAAGCCT 59.784 57.895 3.08 0.00 38.18 4.58
2783 2930 3.782042 CGGAGTACGCTTCAAGCC 58.218 61.111 3.08 0.00 38.18 4.35
2793 2940 2.960129 CGATTGGCGGCGGAGTAC 60.960 66.667 9.78 0.00 36.03 2.73
2794 2941 4.884257 GCGATTGGCGGCGGAGTA 62.884 66.667 9.78 0.00 41.29 2.59
2803 2950 2.021931 CGAGAAAGCGCGATTGGC 59.978 61.111 11.71 6.20 39.84 4.52
2812 2959 3.100862 GATGGCCGTGCGAGAAAGC 62.101 63.158 0.00 0.00 37.71 3.51
2813 2960 2.464459 GGATGGCCGTGCGAGAAAG 61.464 63.158 0.00 0.00 0.00 2.62
2814 2961 2.435938 GGATGGCCGTGCGAGAAA 60.436 61.111 0.00 0.00 0.00 2.52
2815 2962 4.467084 GGGATGGCCGTGCGAGAA 62.467 66.667 10.70 0.00 33.83 2.87
2820 2967 3.797507 ATGATGGGGATGGCCGTGC 62.798 63.158 8.18 8.18 33.83 5.34
2821 2968 1.900016 CATGATGGGGATGGCCGTG 60.900 63.158 0.00 0.00 33.83 4.94
2822 2969 2.517414 CATGATGGGGATGGCCGT 59.483 61.111 0.00 0.00 33.83 5.68
2823 2970 2.987547 GCATGATGGGGATGGCCG 60.988 66.667 0.00 0.00 33.83 6.13
2824 2971 1.229082 ATGCATGATGGGGATGGCC 60.229 57.895 0.00 0.00 0.00 5.36
2825 2972 1.972198 CATGCATGATGGGGATGGC 59.028 57.895 22.59 0.00 31.31 4.40
2826 2973 0.830023 TGCATGCATGATGGGGATGG 60.830 55.000 30.64 0.00 34.99 3.51
2827 2974 0.603065 CTGCATGCATGATGGGGATG 59.397 55.000 30.64 1.88 37.18 3.51
2828 2975 0.481128 TCTGCATGCATGATGGGGAT 59.519 50.000 30.64 0.00 31.99 3.85
2829 2976 0.259356 TTCTGCATGCATGATGGGGA 59.741 50.000 30.64 10.28 31.99 4.81
2830 2977 0.387929 GTTCTGCATGCATGATGGGG 59.612 55.000 30.64 7.74 31.99 4.96
2831 2978 0.030235 CGTTCTGCATGCATGATGGG 59.970 55.000 30.64 15.08 31.99 4.00
2832 2979 0.594028 GCGTTCTGCATGCATGATGG 60.594 55.000 30.64 17.44 45.45 3.51
2833 2980 2.868020 GCGTTCTGCATGCATGATG 58.132 52.632 30.64 19.94 45.45 3.07
2843 2990 1.639298 CTACCCAAGCTGCGTTCTGC 61.639 60.000 0.00 0.00 46.70 4.26
2844 2991 2.460330 CTACCCAAGCTGCGTTCTG 58.540 57.895 0.00 0.00 0.00 3.02
2863 3010 1.135094 ACTATGACCAGCCTGATGGG 58.865 55.000 6.37 0.00 45.25 4.00
2864 3011 1.202734 CCACTATGACCAGCCTGATGG 60.203 57.143 0.00 0.00 46.47 3.51
2865 3012 1.764723 TCCACTATGACCAGCCTGATG 59.235 52.381 0.00 0.00 0.00 3.07
2866 3013 2.045524 CTCCACTATGACCAGCCTGAT 58.954 52.381 0.00 0.00 0.00 2.90
2867 3014 1.007118 TCTCCACTATGACCAGCCTGA 59.993 52.381 0.00 0.00 0.00 3.86
2868 3015 1.411977 CTCTCCACTATGACCAGCCTG 59.588 57.143 0.00 0.00 0.00 4.85
2921 3068 8.168725 TCCCACTATAAGGGTAGTAACATAGAG 58.831 40.741 9.21 0.00 46.82 2.43
2936 3083 7.500992 ACACATATGACACTTCCCACTATAAG 58.499 38.462 10.38 0.00 0.00 1.73
2938 3085 7.783119 ACTACACATATGACACTTCCCACTATA 59.217 37.037 10.38 0.00 0.00 1.31
2989 3136 8.578308 TTTTCAATGCAAAATGAGTCTACAAG 57.422 30.769 0.00 0.00 0.00 3.16
3011 3158 4.006989 TGTTACCATCACATAGCGCTTTT 58.993 39.130 18.68 0.00 0.00 2.27
3084 3231 5.410355 AGATGCCACATAAGCAAAAATGT 57.590 34.783 0.00 0.00 44.83 2.71
3116 3263 7.472100 GCCTGGTCATAGTGAGAGTAACATAAT 60.472 40.741 0.00 0.00 0.00 1.28
3117 3264 6.183360 GCCTGGTCATAGTGAGAGTAACATAA 60.183 42.308 0.00 0.00 0.00 1.90
3128 3275 1.489481 CCTGAGCCTGGTCATAGTGA 58.511 55.000 0.00 0.00 0.00 3.41
3141 3288 0.179062 CCACTATGACCAGCCTGAGC 60.179 60.000 0.00 0.00 40.32 4.26
3144 3291 0.982852 TCCCCACTATGACCAGCCTG 60.983 60.000 0.00 0.00 0.00 4.85
3211 3359 5.962031 ACCTATGACACTACCCACTATGAAA 59.038 40.000 0.00 0.00 0.00 2.69
3432 3580 0.466007 GAGGAGTACGGAGAGGGACC 60.466 65.000 0.00 0.00 0.00 4.46
3433 3581 0.814812 CGAGGAGTACGGAGAGGGAC 60.815 65.000 0.00 0.00 0.00 4.46
3434 3582 1.525923 CGAGGAGTACGGAGAGGGA 59.474 63.158 0.00 0.00 0.00 4.20
3435 3583 2.188161 GCGAGGAGTACGGAGAGGG 61.188 68.421 0.00 0.00 0.00 4.30
3436 3584 1.030488 TTGCGAGGAGTACGGAGAGG 61.030 60.000 0.00 0.00 32.30 3.69
3437 3585 0.099082 GTTGCGAGGAGTACGGAGAG 59.901 60.000 0.00 0.00 32.30 3.20
3438 3586 0.607217 TGTTGCGAGGAGTACGGAGA 60.607 55.000 0.00 0.00 32.30 3.71
3439 3587 0.456312 GTGTTGCGAGGAGTACGGAG 60.456 60.000 0.00 0.00 32.30 4.63
3440 3588 1.582968 GTGTTGCGAGGAGTACGGA 59.417 57.895 0.00 0.00 0.00 4.69
3441 3589 1.800315 CGTGTTGCGAGGAGTACGG 60.800 63.158 0.00 0.00 44.77 4.02
3442 3590 1.208358 TCGTGTTGCGAGGAGTACG 59.792 57.895 0.00 0.00 45.68 3.67
3451 3599 1.625759 TAGCTGTGCATCGTGTTGCG 61.626 55.000 0.00 0.00 45.77 4.85
3452 3600 0.095935 CTAGCTGTGCATCGTGTTGC 59.904 55.000 0.00 0.00 43.07 4.17
3453 3601 0.095935 GCTAGCTGTGCATCGTGTTG 59.904 55.000 7.70 0.00 0.00 3.33
3454 3602 0.036952 AGCTAGCTGTGCATCGTGTT 60.037 50.000 18.57 0.00 0.00 3.32
3455 3603 0.738762 CAGCTAGCTGTGCATCGTGT 60.739 55.000 32.46 0.00 39.10 4.49
3456 3604 2.004445 CAGCTAGCTGTGCATCGTG 58.996 57.895 32.46 8.42 39.10 4.35
3457 3605 1.812922 GCAGCTAGCTGTGCATCGT 60.813 57.895 37.91 3.98 45.24 3.73
3458 3606 2.868173 CGCAGCTAGCTGTGCATCG 61.868 63.158 37.41 29.14 45.65 3.84
3459 3607 3.012399 CGCAGCTAGCTGTGCATC 58.988 61.111 37.41 23.13 45.65 3.91
3464 3612 2.110967 CAATGCCGCAGCTAGCTGT 61.111 57.895 37.91 20.64 45.24 4.40
3465 3613 2.713770 CAATGCCGCAGCTAGCTG 59.286 61.111 35.54 35.54 46.15 4.24
3466 3614 2.515523 CCAATGCCGCAGCTAGCT 60.516 61.111 12.68 12.68 42.61 3.32
3467 3615 2.825836 ACCAATGCCGCAGCTAGC 60.826 61.111 6.62 6.62 40.80 3.42
3468 3616 2.528743 CGACCAATGCCGCAGCTAG 61.529 63.158 0.00 0.00 40.80 3.42
3469 3617 2.511373 CGACCAATGCCGCAGCTA 60.511 61.111 0.00 0.00 40.80 3.32
3475 3623 0.454957 CTCAAAAGCGACCAATGCCG 60.455 55.000 0.00 0.00 0.00 5.69
3476 3624 0.598065 ACTCAAAAGCGACCAATGCC 59.402 50.000 0.00 0.00 0.00 4.40
3477 3625 2.053627 CAACTCAAAAGCGACCAATGC 58.946 47.619 0.00 0.00 0.00 3.56
3478 3626 2.053627 GCAACTCAAAAGCGACCAATG 58.946 47.619 0.00 0.00 0.00 2.82
3479 3627 2.422276 GCAACTCAAAAGCGACCAAT 57.578 45.000 0.00 0.00 0.00 3.16
3480 3628 3.936585 GCAACTCAAAAGCGACCAA 57.063 47.368 0.00 0.00 0.00 3.67
3486 3634 2.018324 GGCAGCGCAACTCAAAAGC 61.018 57.895 11.47 0.00 0.00 3.51
3487 3635 1.727022 CGGCAGCGCAACTCAAAAG 60.727 57.895 11.47 0.00 0.00 2.27
3488 3636 2.331098 CGGCAGCGCAACTCAAAA 59.669 55.556 11.47 0.00 0.00 2.44
3489 3637 4.326766 GCGGCAGCGCAACTCAAA 62.327 61.111 11.47 0.00 34.62 2.69
3505 3653 3.376918 GGTGCCCTTGCCAGAAGC 61.377 66.667 0.00 0.00 44.14 3.86
3506 3654 3.058160 CGGTGCCCTTGCCAGAAG 61.058 66.667 0.00 0.00 36.33 2.85
3513 3661 2.360350 ATCACTGCGGTGCCCTTG 60.360 61.111 21.33 0.00 42.72 3.61
3514 3662 2.045926 GATCACTGCGGTGCCCTT 60.046 61.111 21.33 5.42 42.72 3.95
3515 3663 3.005539 AGATCACTGCGGTGCCCT 61.006 61.111 21.33 16.02 42.72 5.19
3516 3664 2.512515 GAGATCACTGCGGTGCCC 60.513 66.667 21.33 14.04 42.72 5.36
3517 3665 1.153289 ATGAGATCACTGCGGTGCC 60.153 57.895 21.33 14.39 42.72 5.01
3518 3666 0.179089 AGATGAGATCACTGCGGTGC 60.179 55.000 21.33 8.00 42.72 5.01
3519 3667 2.306341 AAGATGAGATCACTGCGGTG 57.694 50.000 20.12 20.12 44.23 4.94
3520 3668 3.265791 GAAAAGATGAGATCACTGCGGT 58.734 45.455 0.00 0.00 0.00 5.68
3521 3669 3.063180 GTGAAAAGATGAGATCACTGCGG 59.937 47.826 0.00 0.00 39.21 5.69
3522 3670 3.241900 CGTGAAAAGATGAGATCACTGCG 60.242 47.826 0.00 0.00 39.94 5.18
3523 3671 3.063180 CCGTGAAAAGATGAGATCACTGC 59.937 47.826 0.00 0.00 39.94 4.40
3524 3672 4.248859 ACCGTGAAAAGATGAGATCACTG 58.751 43.478 0.00 0.00 39.94 3.66
3525 3673 4.543590 ACCGTGAAAAGATGAGATCACT 57.456 40.909 0.00 0.00 39.94 3.41
3526 3674 4.567159 GGTACCGTGAAAAGATGAGATCAC 59.433 45.833 0.00 0.00 38.98 3.06
3527 3675 4.466370 AGGTACCGTGAAAAGATGAGATCA 59.534 41.667 6.18 0.00 0.00 2.92
3528 3676 5.012328 AGGTACCGTGAAAAGATGAGATC 57.988 43.478 6.18 0.00 0.00 2.75
3529 3677 4.440250 CGAGGTACCGTGAAAAGATGAGAT 60.440 45.833 6.18 0.00 0.00 2.75
3530 3678 3.119602 CGAGGTACCGTGAAAAGATGAGA 60.120 47.826 6.18 0.00 0.00 3.27
3531 3679 3.179830 CGAGGTACCGTGAAAAGATGAG 58.820 50.000 6.18 0.00 0.00 2.90
3532 3680 2.559668 ACGAGGTACCGTGAAAAGATGA 59.440 45.455 6.18 0.00 41.70 2.92
3533 3681 2.955614 ACGAGGTACCGTGAAAAGATG 58.044 47.619 6.18 0.00 41.70 2.90
3534 3682 3.006110 TCAACGAGGTACCGTGAAAAGAT 59.994 43.478 6.18 0.00 42.54 2.40
3535 3683 2.361757 TCAACGAGGTACCGTGAAAAGA 59.638 45.455 6.18 0.00 42.54 2.52
3536 3684 2.729882 CTCAACGAGGTACCGTGAAAAG 59.270 50.000 6.18 0.00 42.54 2.27
3537 3685 2.361757 TCTCAACGAGGTACCGTGAAAA 59.638 45.455 6.18 0.00 42.54 2.29
3538 3686 1.955778 TCTCAACGAGGTACCGTGAAA 59.044 47.619 6.18 0.00 42.54 2.69
3539 3687 1.267806 GTCTCAACGAGGTACCGTGAA 59.732 52.381 6.18 0.00 42.54 3.18
3540 3688 0.877071 GTCTCAACGAGGTACCGTGA 59.123 55.000 6.18 8.19 42.54 4.35
3541 3689 3.396491 GTCTCAACGAGGTACCGTG 57.604 57.895 6.18 5.52 42.54 4.94
3552 3700 1.918609 GATTACCGTCAGCGTCTCAAC 59.081 52.381 0.00 0.00 36.15 3.18
3553 3701 1.542472 TGATTACCGTCAGCGTCTCAA 59.458 47.619 0.00 0.00 36.15 3.02
3554 3702 1.170442 TGATTACCGTCAGCGTCTCA 58.830 50.000 0.00 0.00 36.15 3.27
3555 3703 2.493713 ATGATTACCGTCAGCGTCTC 57.506 50.000 0.00 0.00 36.15 3.36
3556 3704 2.686405 TGTATGATTACCGTCAGCGTCT 59.314 45.455 0.00 0.00 36.15 4.18
3557 3705 3.074504 TGTATGATTACCGTCAGCGTC 57.925 47.619 0.00 0.00 36.15 5.19
3558 3706 3.513680 TTGTATGATTACCGTCAGCGT 57.486 42.857 0.00 0.00 36.15 5.07
3559 3707 3.362986 GCATTGTATGATTACCGTCAGCG 60.363 47.826 0.00 0.00 37.95 5.18
3560 3708 3.362986 CGCATTGTATGATTACCGTCAGC 60.363 47.826 0.00 0.00 0.00 4.26
3561 3709 4.048504 TCGCATTGTATGATTACCGTCAG 58.951 43.478 0.00 0.00 0.00 3.51
3562 3710 4.048241 TCGCATTGTATGATTACCGTCA 57.952 40.909 0.00 0.00 0.00 4.35
3563 3711 4.923871 AGATCGCATTGTATGATTACCGTC 59.076 41.667 0.00 0.00 0.00 4.79
3564 3712 4.883083 AGATCGCATTGTATGATTACCGT 58.117 39.130 0.00 0.00 0.00 4.83
3565 3713 5.177511 ACAAGATCGCATTGTATGATTACCG 59.822 40.000 0.00 0.00 39.06 4.02
3566 3714 6.545504 ACAAGATCGCATTGTATGATTACC 57.454 37.500 0.00 0.00 39.06 2.85
3567 3715 7.220604 CGTACAAGATCGCATTGTATGATTAC 58.779 38.462 15.50 3.46 46.22 1.89
3568 3716 6.128929 GCGTACAAGATCGCATTGTATGATTA 60.129 38.462 21.13 0.00 46.22 1.75
3569 3717 5.333339 GCGTACAAGATCGCATTGTATGATT 60.333 40.000 21.13 0.00 46.22 2.57
3570 3718 4.150627 GCGTACAAGATCGCATTGTATGAT 59.849 41.667 21.13 0.00 46.22 2.45
3571 3719 3.489416 GCGTACAAGATCGCATTGTATGA 59.511 43.478 21.13 0.00 46.22 2.15
3581 3729 2.062890 GAACCGCGCGTACAAGATCG 62.063 60.000 29.95 12.30 0.00 3.69
3582 3730 0.801067 AGAACCGCGCGTACAAGATC 60.801 55.000 29.95 16.35 0.00 2.75
3583 3731 0.452987 TAGAACCGCGCGTACAAGAT 59.547 50.000 29.95 7.33 0.00 2.40
3584 3732 0.454957 GTAGAACCGCGCGTACAAGA 60.455 55.000 29.95 6.23 0.00 3.02
3585 3733 1.726845 CGTAGAACCGCGCGTACAAG 61.727 60.000 29.95 15.49 0.00 3.16
3586 3734 1.797143 CGTAGAACCGCGCGTACAA 60.797 57.895 29.95 7.05 0.00 2.41
3587 3735 2.202336 CGTAGAACCGCGCGTACA 60.202 61.111 29.95 5.86 0.00 2.90
3588 3736 3.601376 GCGTAGAACCGCGCGTAC 61.601 66.667 29.95 21.93 44.69 3.67
3595 3743 1.666054 AGAGTAGGAGCGTAGAACCG 58.334 55.000 0.00 0.00 0.00 4.44
3596 3744 3.807553 AGTAGAGTAGGAGCGTAGAACC 58.192 50.000 0.00 0.00 0.00 3.62
3597 3745 3.809279 GGAGTAGAGTAGGAGCGTAGAAC 59.191 52.174 0.00 0.00 0.00 3.01
3598 3746 3.710677 AGGAGTAGAGTAGGAGCGTAGAA 59.289 47.826 0.00 0.00 0.00 2.10
3599 3747 3.069872 CAGGAGTAGAGTAGGAGCGTAGA 59.930 52.174 0.00 0.00 0.00 2.59
3600 3748 3.181463 ACAGGAGTAGAGTAGGAGCGTAG 60.181 52.174 0.00 0.00 0.00 3.51
3601 3749 2.770802 ACAGGAGTAGAGTAGGAGCGTA 59.229 50.000 0.00 0.00 0.00 4.42
3602 3750 1.560611 ACAGGAGTAGAGTAGGAGCGT 59.439 52.381 0.00 0.00 0.00 5.07
3603 3751 2.335316 ACAGGAGTAGAGTAGGAGCG 57.665 55.000 0.00 0.00 0.00 5.03
3604 3752 5.887035 TCTTAAACAGGAGTAGAGTAGGAGC 59.113 44.000 0.00 0.00 0.00 4.70
3605 3753 6.038936 GCTCTTAAACAGGAGTAGAGTAGGAG 59.961 46.154 0.00 0.00 32.81 3.69
3606 3754 5.887035 GCTCTTAAACAGGAGTAGAGTAGGA 59.113 44.000 0.00 0.00 32.81 2.94
3607 3755 5.652891 TGCTCTTAAACAGGAGTAGAGTAGG 59.347 44.000 0.00 0.00 32.81 3.18
3608 3756 6.761099 TGCTCTTAAACAGGAGTAGAGTAG 57.239 41.667 0.00 0.00 32.81 2.57
3609 3757 6.720288 AGTTGCTCTTAAACAGGAGTAGAGTA 59.280 38.462 0.00 0.00 32.81 2.59
3610 3758 5.540719 AGTTGCTCTTAAACAGGAGTAGAGT 59.459 40.000 0.00 0.00 32.81 3.24
3611 3759 6.031751 AGTTGCTCTTAAACAGGAGTAGAG 57.968 41.667 0.00 0.00 33.19 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.