Multiple sequence alignment - TraesCS3A01G289800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G289800 chr3A 100.000 2630 0 0 1 2630 518719116 518721745 0.000000e+00 4857.0
1 TraesCS3A01G289800 chr3A 100.000 2466 0 0 2925 5390 518722040 518724505 0.000000e+00 4554.0
2 TraesCS3A01G289800 chr3A 93.506 231 13 2 2928 3158 518720525 518720753 5.170000e-90 342.0
3 TraesCS3A01G289800 chr3A 93.506 231 13 2 1410 1638 518722043 518722273 5.170000e-90 342.0
4 TraesCS3A01G289800 chr3A 87.931 116 14 0 4896 5011 518731270 518731385 2.620000e-28 137.0
5 TraesCS3A01G289800 chr3A 93.878 49 3 0 90 138 523848922 523848874 2.080000e-09 75.0
6 TraesCS3A01G289800 chr3D 88.086 1536 121 37 1141 2630 253523380 253524899 0.000000e+00 1766.0
7 TraesCS3A01G289800 chr3D 93.569 1104 70 1 3159 4262 399499144 399500246 0.000000e+00 1644.0
8 TraesCS3A01G289800 chr3D 87.884 1139 78 30 6 1141 399498066 399499147 0.000000e+00 1284.0
9 TraesCS3A01G289800 chr3D 90.255 862 68 9 4544 5390 399500267 399501127 0.000000e+00 1112.0
10 TraesCS3A01G289800 chr3D 81.443 485 56 17 1144 1600 253524827 253525305 3.070000e-97 366.0
11 TraesCS3A01G289800 chr3D 88.125 160 14 4 3000 3158 609955998 609956153 9.220000e-43 185.0
12 TraesCS3A01G289800 chr3D 88.050 159 16 3 3000 3157 609959385 609959541 9.220000e-43 185.0
13 TraesCS3A01G289800 chr3D 91.453 117 9 1 4896 5011 399521201 399521317 5.590000e-35 159.0
14 TraesCS3A01G289800 chr3D 88.288 111 9 3 1144 1253 609955632 609955739 4.380000e-26 130.0
15 TraesCS3A01G289800 chr3D 77.876 226 34 11 2925 3142 609862013 609862230 5.670000e-25 126.0
16 TraesCS3A01G289800 chr3D 77.434 226 34 15 2925 3142 11336375 11336159 9.480000e-23 119.0
17 TraesCS3A01G289800 chr3D 85.455 110 9 5 5021 5123 399521385 399521494 2.050000e-19 108.0
18 TraesCS3A01G289800 chr1B 89.279 998 106 1 1634 2630 24688980 24687983 0.000000e+00 1249.0
19 TraesCS3A01G289800 chr1B 82.041 490 73 13 141 627 392755461 392755938 2.340000e-108 403.0
20 TraesCS3A01G289800 chr1B 88.679 106 9 3 1144 1248 24688055 24687952 5.670000e-25 126.0
21 TraesCS3A01G289800 chr3B 91.085 774 67 2 3159 3932 525377841 525378612 0.000000e+00 1046.0
22 TraesCS3A01G289800 chr3B 87.013 539 41 17 1 535 525377015 525377528 1.010000e-161 580.0
23 TraesCS3A01G289800 chr3B 94.553 257 14 0 885 1141 525377588 525377844 1.090000e-106 398.0
24 TraesCS3A01G289800 chr3B 77.425 536 76 27 1140 1637 809069859 809070387 1.480000e-70 278.0
25 TraesCS3A01G289800 chr3B 87.654 243 13 3 4295 4520 525379049 525379291 3.200000e-67 267.0
26 TraesCS3A01G289800 chr3B 94.231 52 3 0 85 136 742115465 742115516 4.480000e-11 80.5
27 TraesCS3A01G289800 chr3B 95.652 46 2 0 91 136 810143458 810143503 2.080000e-09 75.0
28 TraesCS3A01G289800 chr5A 83.735 1119 156 15 1483 2580 34107307 34108420 0.000000e+00 1035.0
29 TraesCS3A01G289800 chr5A 79.830 471 55 18 174 637 32713608 32713171 1.890000e-79 307.0
30 TraesCS3A01G289800 chr5A 82.213 253 29 13 5056 5299 601731458 601731703 2.550000e-48 204.0
31 TraesCS3A01G289800 chr5A 94.231 52 3 0 85 136 535778250 535778199 4.480000e-11 80.5
32 TraesCS3A01G289800 chrUn 83.394 1108 162 18 1481 2576 60478471 60479568 0.000000e+00 1007.0
33 TraesCS3A01G289800 chrUn 81.481 1134 175 26 1502 2620 339003142 339002029 0.000000e+00 898.0
34 TraesCS3A01G289800 chrUn 76.233 1338 249 53 1287 2570 146421208 146422530 0.000000e+00 645.0
35 TraesCS3A01G289800 chrUn 75.409 1346 259 57 1287 2576 146408722 146410051 2.160000e-163 586.0
36 TraesCS3A01G289800 chrUn 73.891 1398 282 60 1287 2621 146416909 146418286 2.920000e-132 483.0
37 TraesCS3A01G289800 chrUn 84.091 88 14 0 1287 1374 146412438 146412525 9.620000e-13 86.1
38 TraesCS3A01G289800 chr1A 83.409 1097 153 22 1540 2614 576357050 576358139 0.000000e+00 990.0
39 TraesCS3A01G289800 chr1A 84.715 386 31 10 4523 4895 24354822 24354452 1.430000e-95 361.0
40 TraesCS3A01G289800 chr1A 94.340 53 3 0 85 137 24622471 24622419 1.240000e-11 82.4
41 TraesCS3A01G289800 chr6B 81.250 1152 193 20 1481 2614 632313436 632314582 0.000000e+00 909.0
42 TraesCS3A01G289800 chr6B 95.745 47 2 0 90 136 583728167 583728121 5.790000e-10 76.8
43 TraesCS3A01G289800 chr1D 82.546 1037 165 11 1595 2620 334402245 334401214 0.000000e+00 898.0
44 TraesCS3A01G289800 chr1D 77.223 1563 274 54 1139 2630 312478025 312479576 0.000000e+00 839.0
45 TraesCS3A01G289800 chr1D 88.830 376 30 5 4521 4895 23357053 23356689 8.230000e-123 451.0
46 TraesCS3A01G289800 chr1D 81.874 491 77 12 141 627 291804692 291805174 2.340000e-108 403.0
47 TraesCS3A01G289800 chr1D 83.047 407 43 21 1144 1531 312479505 312479904 4.000000e-91 346.0
48 TraesCS3A01G289800 chr1D 79.937 319 44 9 5068 5384 52114793 52114493 3.270000e-52 217.0
49 TraesCS3A01G289800 chr2A 80.307 1173 195 27 1477 2624 20788483 20787322 0.000000e+00 854.0
50 TraesCS3A01G289800 chr2A 88.757 169 16 3 1470 1638 28183508 28183673 2.550000e-48 204.0
51 TraesCS3A01G289800 chr7D 84.368 467 52 16 1149 1600 481847521 481847061 6.410000e-119 438.0
52 TraesCS3A01G289800 chr7D 81.132 424 49 12 140 559 1294962 1295358 1.460000e-80 311.0
53 TraesCS3A01G289800 chr7D 82.263 327 41 12 5068 5384 632604590 632604909 3.200000e-67 267.0
54 TraesCS3A01G289800 chr7D 85.535 159 19 4 3000 3157 131812008 131811853 4.320000e-36 163.0
55 TraesCS3A01G289800 chr6A 80.868 507 61 19 138 637 32663791 32663314 3.070000e-97 366.0
56 TraesCS3A01G289800 chr5D 81.087 423 50 14 138 557 54693283 54693678 1.460000e-80 311.0
57 TraesCS3A01G289800 chr2D 84.884 258 31 8 295 548 55317940 55317687 2.490000e-63 254.0
58 TraesCS3A01G289800 chr2D 79.747 237 38 9 2925 3157 124210141 124210371 4.320000e-36 163.0
59 TraesCS3A01G289800 chr2D 87.692 65 8 0 1167 1231 234580150 234580214 5.790000e-10 76.8
60 TraesCS3A01G289800 chr2D 95.745 47 1 1 90 136 335671269 335671224 2.080000e-09 75.0
61 TraesCS3A01G289800 chr2D 90.244 41 3 1 636 675 264818473 264818513 1.000000e-02 52.8
62 TraesCS3A01G289800 chr7B 79.552 357 55 15 290 637 64697297 64696950 6.980000e-59 239.0
63 TraesCS3A01G289800 chr4A 82.627 236 31 8 2925 3155 63706657 63706887 3.290000e-47 200.0
64 TraesCS3A01G289800 chr4A 81.513 238 34 8 2925 3157 63708075 63708307 2.560000e-43 187.0
65 TraesCS3A01G289800 chr5B 94.231 52 3 0 85 136 685431888 685431939 4.480000e-11 80.5
66 TraesCS3A01G289800 chr5B 92.857 42 3 0 4154 4195 550142906 550142947 1.620000e-05 62.1
67 TraesCS3A01G289800 chr7A 95.652 46 2 0 91 136 483761587 483761632 2.080000e-09 75.0
68 TraesCS3A01G289800 chr2B 100.000 29 0 0 636 664 56033590 56033618 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G289800 chr3A 518719116 518724505 5389 False 2523.750000 4857 96.753000 1 5390 4 chr3A.!!$F2 5389
1 TraesCS3A01G289800 chr3D 399498066 399501127 3061 False 1346.666667 1644 90.569333 6 5390 3 chr3D.!!$F3 5384
2 TraesCS3A01G289800 chr3D 253523380 253525305 1925 False 1066.000000 1766 84.764500 1141 2630 2 chr3D.!!$F2 1489
3 TraesCS3A01G289800 chr1B 24687952 24688980 1028 True 687.500000 1249 88.979000 1144 2630 2 chr1B.!!$R1 1486
4 TraesCS3A01G289800 chr3B 525377015 525379291 2276 False 572.750000 1046 90.076250 1 4520 4 chr3B.!!$F4 4519
5 TraesCS3A01G289800 chr3B 809069859 809070387 528 False 278.000000 278 77.425000 1140 1637 1 chr3B.!!$F2 497
6 TraesCS3A01G289800 chr5A 34107307 34108420 1113 False 1035.000000 1035 83.735000 1483 2580 1 chr5A.!!$F1 1097
7 TraesCS3A01G289800 chrUn 60478471 60479568 1097 False 1007.000000 1007 83.394000 1481 2576 1 chrUn.!!$F1 1095
8 TraesCS3A01G289800 chrUn 339002029 339003142 1113 True 898.000000 898 81.481000 1502 2620 1 chrUn.!!$R1 1118
9 TraesCS3A01G289800 chrUn 146416909 146422530 5621 False 564.000000 645 75.062000 1287 2621 2 chrUn.!!$F3 1334
10 TraesCS3A01G289800 chrUn 146408722 146412525 3803 False 336.050000 586 79.750000 1287 2576 2 chrUn.!!$F2 1289
11 TraesCS3A01G289800 chr1A 576357050 576358139 1089 False 990.000000 990 83.409000 1540 2614 1 chr1A.!!$F1 1074
12 TraesCS3A01G289800 chr6B 632313436 632314582 1146 False 909.000000 909 81.250000 1481 2614 1 chr6B.!!$F1 1133
13 TraesCS3A01G289800 chr1D 334401214 334402245 1031 True 898.000000 898 82.546000 1595 2620 1 chr1D.!!$R3 1025
14 TraesCS3A01G289800 chr1D 312478025 312479904 1879 False 592.500000 839 80.135000 1139 2630 2 chr1D.!!$F2 1491
15 TraesCS3A01G289800 chr2A 20787322 20788483 1161 True 854.000000 854 80.307000 1477 2624 1 chr2A.!!$R1 1147

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 608 0.532862 GTGTATCCCGGTGATGCAGG 60.533 60.0 18.93 0.0 45.21 4.85 F
1262 1270 0.179059 TGTGTGAGTGCGTGACCATT 60.179 50.0 0.00 0.0 0.00 3.16 F
1613 5991 0.252650 AGAGAGCAAGGAGGGAAGCT 60.253 55.0 0.00 0.0 40.60 3.74 F
3009 7579 0.030638 CTGGCGGGTTGTTGAGTTTG 59.969 55.0 0.00 0.0 0.00 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 6276 0.033405 AGTTCTCCGCTAGGGCACTA 60.033 55.0 0.19 0.00 38.60 2.74 R
2974 7543 0.534203 CCAGCTACAACACACGGGTT 60.534 55.0 0.00 0.00 0.00 4.11 R
3012 7582 0.602905 ACGAACGCCTTTCCCTTGAG 60.603 55.0 0.00 0.00 0.00 3.02 R
4565 10840 0.034896 GAATCCACCCTCACGTGTGT 59.965 55.0 16.51 8.78 31.47 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 99 8.997323 AGAAATGTTCATCACAAAAACAACAAA 58.003 25.926 0.00 0.00 39.50 2.83
103 105 8.677635 GTTCATCACAAAAACAACAAAAACAAC 58.322 29.630 0.00 0.00 0.00 3.32
115 117 3.444388 ACAAAAACAACGCCTTTAGTCCA 59.556 39.130 0.00 0.00 0.00 4.02
329 334 8.555361 CGTGAATTTTAAAAATTGTTCCACCAT 58.445 29.630 4.44 0.00 0.00 3.55
334 339 8.807948 TTTTAAAAATTGTTCCACCATTTCCA 57.192 26.923 0.00 0.00 0.00 3.53
502 510 9.459276 CAAAAATTTGTAAAACTGTTCACGAAG 57.541 29.630 11.35 0.00 33.59 3.79
503 511 8.973835 AAAATTTGTAAAACTGTTCACGAAGA 57.026 26.923 11.35 0.00 0.00 2.87
504 512 8.973835 AAATTTGTAAAACTGTTCACGAAGAA 57.026 26.923 11.35 0.00 0.00 2.52
506 514 7.962934 TTTGTAAAACTGTTCACGAAGAATG 57.037 32.000 0.00 0.00 38.76 2.67
515 523 7.925993 ACTGTTCACGAAGAATGAAAATGTTA 58.074 30.769 0.00 0.00 37.80 2.41
539 547 7.662604 AACGATTTTAAATAAGGTCACGAGT 57.337 32.000 0.00 0.00 0.00 4.18
541 549 8.091385 ACGATTTTAAATAAGGTCACGAGTTT 57.909 30.769 0.00 0.00 0.00 2.66
542 550 9.206870 ACGATTTTAAATAAGGTCACGAGTTTA 57.793 29.630 0.00 0.00 0.00 2.01
581 589 6.820152 TGACATCACCAAATTGAGAGTGATAG 59.180 38.462 13.32 11.06 45.69 2.08
600 608 0.532862 GTGTATCCCGGTGATGCAGG 60.533 60.000 18.93 0.00 45.21 4.85
615 623 5.461078 GTGATGCAGGAAAATGTGATTATGC 59.539 40.000 0.00 0.00 0.00 3.14
616 624 5.361571 TGATGCAGGAAAATGTGATTATGCT 59.638 36.000 0.00 0.00 33.68 3.79
617 625 5.001237 TGCAGGAAAATGTGATTATGCTG 57.999 39.130 0.00 0.00 33.68 4.41
618 626 4.463539 TGCAGGAAAATGTGATTATGCTGT 59.536 37.500 0.00 0.00 32.76 4.40
620 628 5.290158 GCAGGAAAATGTGATTATGCTGTTG 59.710 40.000 0.00 0.00 32.76 3.33
621 629 6.623486 CAGGAAAATGTGATTATGCTGTTGA 58.377 36.000 0.00 0.00 0.00 3.18
623 631 7.599621 CAGGAAAATGTGATTATGCTGTTGAAA 59.400 33.333 0.00 0.00 0.00 2.69
624 632 8.149647 AGGAAAATGTGATTATGCTGTTGAAAA 58.850 29.630 0.00 0.00 0.00 2.29
625 633 8.938906 GGAAAATGTGATTATGCTGTTGAAAAT 58.061 29.630 0.00 0.00 0.00 1.82
650 658 3.280920 TTTTTGCAACGCATGGACC 57.719 47.368 0.00 0.00 38.76 4.46
651 659 0.749649 TTTTTGCAACGCATGGACCT 59.250 45.000 0.00 0.00 38.76 3.85
652 660 0.749649 TTTTGCAACGCATGGACCTT 59.250 45.000 0.00 0.00 38.76 3.50
670 678 6.603997 TGGACCTTTTTGCTAGTAGAAACAAA 59.396 34.615 0.00 0.00 0.00 2.83
680 688 7.145323 TGCTAGTAGAAACAAAGAAAATTGGC 58.855 34.615 0.00 0.00 34.56 4.52
762 770 9.884465 AATGAAATGAAACGAAAAACAAAACAA 57.116 22.222 0.00 0.00 0.00 2.83
777 785 7.857734 AACAAAACAAAAATAAGGGACCAAG 57.142 32.000 0.00 0.00 0.00 3.61
806 814 1.094785 CGACTGGGCCAAATCGATTT 58.905 50.000 27.42 17.60 36.70 2.17
811 819 2.230992 CTGGGCCAAATCGATTTCAACA 59.769 45.455 20.31 14.85 0.00 3.33
819 827 6.615088 CCAAATCGATTTCAACACTGATTCT 58.385 36.000 20.31 0.00 0.00 2.40
845 853 0.987294 ATATCCAGCCCCGATTCCTG 59.013 55.000 0.00 0.00 0.00 3.86
859 867 3.119531 CGATTCCTGTTGCCTGCATAAAA 60.120 43.478 0.00 0.00 0.00 1.52
860 868 4.617995 CGATTCCTGTTGCCTGCATAAAAA 60.618 41.667 0.00 0.00 0.00 1.94
861 869 4.888326 TTCCTGTTGCCTGCATAAAAAT 57.112 36.364 0.00 0.00 0.00 1.82
862 870 4.888326 TCCTGTTGCCTGCATAAAAATT 57.112 36.364 0.00 0.00 0.00 1.82
863 871 4.567971 TCCTGTTGCCTGCATAAAAATTG 58.432 39.130 0.00 0.00 0.00 2.32
864 872 4.282957 TCCTGTTGCCTGCATAAAAATTGA 59.717 37.500 0.00 0.00 0.00 2.57
866 874 5.292589 CCTGTTGCCTGCATAAAAATTGATC 59.707 40.000 0.00 0.00 0.00 2.92
867 875 4.863689 TGTTGCCTGCATAAAAATTGATCG 59.136 37.500 0.00 0.00 0.00 3.69
868 876 4.979943 TGCCTGCATAAAAATTGATCGA 57.020 36.364 0.00 0.00 0.00 3.59
872 880 4.339247 CCTGCATAAAAATTGATCGACCCT 59.661 41.667 0.00 0.00 0.00 4.34
873 881 5.499139 TGCATAAAAATTGATCGACCCTC 57.501 39.130 0.00 0.00 0.00 4.30
875 883 4.554723 GCATAAAAATTGATCGACCCTCGG 60.555 45.833 0.00 0.00 40.88 4.63
876 884 1.379527 AAAATTGATCGACCCTCGGC 58.620 50.000 0.00 0.00 40.88 5.54
962 970 1.202382 CGTGGAAGGAATCGAGGGTAC 60.202 57.143 0.00 0.00 0.00 3.34
1015 1023 2.687935 GAGGATATGGAGAGCGAGGATC 59.312 54.545 0.00 0.00 0.00 3.36
1022 1030 1.068434 GGAGAGCGAGGATCAAGAAGG 59.932 57.143 0.00 0.00 33.17 3.46
1035 1043 1.131883 CAAGAAGGCGCCAATGAAGAG 59.868 52.381 31.54 6.46 0.00 2.85
1054 1062 4.113815 CCATCTTGCCCGCCTCCA 62.114 66.667 0.00 0.00 0.00 3.86
1095 1103 2.852495 AAGACGGCGATTCATGCGGT 62.852 55.000 16.62 0.00 46.74 5.68
1142 1150 2.874648 TACTTCGCCGACCGCTCCTA 62.875 60.000 0.00 0.00 36.73 2.94
1157 1165 3.307059 CGCTCCTATTAGGGCAATAAGCT 60.307 47.826 17.82 0.00 44.79 3.74
1161 1169 2.638480 ATTAGGGCAATAAGCTGCGA 57.362 45.000 0.00 0.00 43.60 5.10
1162 1170 2.638480 TTAGGGCAATAAGCTGCGAT 57.362 45.000 0.00 0.00 43.60 4.58
1253 1261 2.324477 GTGTGCGTGTGTGAGTGC 59.676 61.111 0.00 0.00 0.00 4.40
1254 1262 3.261216 TGTGCGTGTGTGAGTGCG 61.261 61.111 0.00 0.00 0.00 5.34
1255 1263 3.261951 GTGCGTGTGTGAGTGCGT 61.262 61.111 0.00 0.00 0.00 5.24
1258 1266 2.920869 CGTGTGTGAGTGCGTGAC 59.079 61.111 0.00 0.00 0.00 3.67
1259 1267 2.585869 CGTGTGTGAGTGCGTGACC 61.586 63.158 0.00 0.00 0.00 4.02
1260 1268 1.520564 GTGTGTGAGTGCGTGACCA 60.521 57.895 0.00 0.00 0.00 4.02
1261 1269 0.880278 GTGTGTGAGTGCGTGACCAT 60.880 55.000 0.00 0.00 0.00 3.55
1262 1270 0.179059 TGTGTGAGTGCGTGACCATT 60.179 50.000 0.00 0.00 0.00 3.16
1282 1313 3.276846 GTGTGTGCACGGGGTCAC 61.277 66.667 13.13 11.81 35.75 3.67
1283 1314 3.787001 TGTGTGCACGGGGTCACA 61.787 61.111 13.13 6.92 40.50 3.58
1393 5718 2.283676 GGGGACGTGGGAGAGTGA 60.284 66.667 0.00 0.00 0.00 3.41
1489 5841 1.734388 GCTGGCGGGTTGTTGAGTTT 61.734 55.000 0.00 0.00 0.00 2.66
1496 5848 2.297701 GGGTTGTTGAGTTTGAGCTCA 58.702 47.619 13.74 13.74 43.03 4.26
1523 5881 2.170985 CGTTCGTGCGCTGGAAAG 59.829 61.111 9.73 10.53 0.00 2.62
1532 5891 1.228657 GCGCTGGAAAGAAACCTCGT 61.229 55.000 0.00 0.00 0.00 4.18
1570 5946 3.005529 TCCTCCTTCCCTTTCTTCCTT 57.994 47.619 0.00 0.00 0.00 3.36
1573 5951 3.587506 CCTCCTTCCCTTTCTTCCTTGTA 59.412 47.826 0.00 0.00 0.00 2.41
1609 5987 0.411452 ACAGAGAGAGCAAGGAGGGA 59.589 55.000 0.00 0.00 0.00 4.20
1613 5991 0.252650 AGAGAGCAAGGAGGGAAGCT 60.253 55.000 0.00 0.00 40.60 3.74
1864 6257 0.667792 GTCGCGAAGAAGGACAAGCT 60.668 55.000 12.06 0.00 0.00 3.74
1881 6276 3.665675 CTTGCGCGCCTACCTCCTT 62.666 63.158 30.77 0.00 0.00 3.36
1890 6285 1.412649 GCCTACCTCCTTAGTGCCCTA 60.413 57.143 0.00 0.00 0.00 3.53
1902 6297 0.822164 GTGCCCTAGCGGAGAACTTA 59.178 55.000 1.75 0.00 44.31 2.24
1928 6323 1.813513 CAGGTGGCGTCAAAGAAGAT 58.186 50.000 0.00 0.00 0.00 2.40
1933 6328 1.000394 TGGCGTCAAAGAAGATCACGA 60.000 47.619 3.92 0.00 32.08 4.35
1967 6362 2.345991 CTTGAAGGCCGGGTTCGA 59.654 61.111 2.18 0.00 39.00 3.71
1978 6373 3.692406 GGTTCGAGGGCGTGGACT 61.692 66.667 0.00 0.00 38.98 3.85
2065 6460 1.899437 GACCCTGGATGACTTCGCCA 61.899 60.000 0.00 0.00 0.00 5.69
2377 6785 4.471726 GGGACGATGACGACGCGT 62.472 66.667 13.85 13.85 45.10 6.01
2998 7568 2.032071 GTGTTGTAGCTGGCGGGT 59.968 61.111 2.51 2.51 0.00 5.28
2999 7569 1.599797 GTGTTGTAGCTGGCGGGTT 60.600 57.895 2.13 0.00 0.00 4.11
3000 7570 1.599518 TGTTGTAGCTGGCGGGTTG 60.600 57.895 2.13 0.00 0.00 3.77
3001 7571 1.599797 GTTGTAGCTGGCGGGTTGT 60.600 57.895 2.13 0.00 0.00 3.32
3002 7572 1.149627 TTGTAGCTGGCGGGTTGTT 59.850 52.632 2.13 0.00 0.00 2.83
3003 7573 1.169661 TTGTAGCTGGCGGGTTGTTG 61.170 55.000 2.13 0.00 0.00 3.33
3004 7574 1.302192 GTAGCTGGCGGGTTGTTGA 60.302 57.895 2.13 0.00 0.00 3.18
3005 7575 1.003839 TAGCTGGCGGGTTGTTGAG 60.004 57.895 2.13 0.00 0.00 3.02
3006 7576 1.764571 TAGCTGGCGGGTTGTTGAGT 61.765 55.000 2.13 0.00 0.00 3.41
3009 7579 0.030638 CTGGCGGGTTGTTGAGTTTG 59.969 55.000 0.00 0.00 0.00 2.93
3010 7580 0.394488 TGGCGGGTTGTTGAGTTTGA 60.394 50.000 0.00 0.00 0.00 2.69
3011 7581 0.310854 GGCGGGTTGTTGAGTTTGAG 59.689 55.000 0.00 0.00 0.00 3.02
3012 7582 0.317854 GCGGGTTGTTGAGTTTGAGC 60.318 55.000 0.00 0.00 0.00 4.26
3013 7583 1.308998 CGGGTTGTTGAGTTTGAGCT 58.691 50.000 0.00 0.00 0.00 4.09
3014 7584 1.264288 CGGGTTGTTGAGTTTGAGCTC 59.736 52.381 6.82 6.82 36.12 4.09
3015 7585 2.297701 GGGTTGTTGAGTTTGAGCTCA 58.702 47.619 13.74 13.74 43.03 4.26
3042 7613 4.424430 CGTTCGTGCGCCGGAAAG 62.424 66.667 5.05 12.33 37.11 2.62
3050 7621 1.081442 GCGCCGGAAAGAAACCTTG 60.081 57.895 5.05 0.00 0.00 3.61
3052 7623 1.515521 CGCCGGAAAGAAACCTTGCT 61.516 55.000 5.05 0.00 0.00 3.91
3053 7624 0.039165 GCCGGAAAGAAACCTTGCTG 60.039 55.000 5.05 0.00 0.00 4.41
3059 7630 1.692411 AAGAAACCTTGCTGTGTCCC 58.308 50.000 0.00 0.00 0.00 4.46
3060 7631 0.550914 AGAAACCTTGCTGTGTCCCA 59.449 50.000 0.00 0.00 0.00 4.37
3080 7656 3.265791 CATGTTCTTCTTCCTCCTTCCG 58.734 50.000 0.00 0.00 0.00 4.30
3082 7658 2.704065 TGTTCTTCTTCCTCCTTCCGTT 59.296 45.455 0.00 0.00 0.00 4.44
3085 7661 3.240302 TCTTCTTCCTCCTTCCGTTTCT 58.760 45.455 0.00 0.00 0.00 2.52
3088 7664 2.302157 TCTTCCTCCTTCCGTTTCTTCC 59.698 50.000 0.00 0.00 0.00 3.46
3091 7667 1.903183 CCTCCTTCCGTTTCTTCCTCT 59.097 52.381 0.00 0.00 0.00 3.69
3093 7669 3.514309 CCTCCTTCCGTTTCTTCCTCTTA 59.486 47.826 0.00 0.00 0.00 2.10
3105 7681 2.160721 TCCTCTTAGGTTCGAGCCAT 57.839 50.000 21.22 8.16 36.53 4.40
3108 7684 1.482593 CTCTTAGGTTCGAGCCATGGT 59.517 52.381 21.22 1.81 0.00 3.55
3109 7685 2.693591 CTCTTAGGTTCGAGCCATGGTA 59.306 50.000 21.22 0.75 0.00 3.25
3110 7686 3.101437 TCTTAGGTTCGAGCCATGGTAA 58.899 45.455 21.22 9.05 0.00 2.85
3111 7687 2.973694 TAGGTTCGAGCCATGGTAAC 57.026 50.000 21.22 12.32 0.00 2.50
3127 7722 2.167487 GGTAACAGAGAGAGCAAGGAGG 59.833 54.545 0.00 0.00 0.00 4.30
3130 7725 1.079987 AGAGAGAGCAAGGAGGGCA 59.920 57.895 0.00 0.00 0.00 5.36
3133 7728 2.610233 AGAGCAAGGAGGGCAGCT 60.610 61.111 0.00 0.00 40.60 4.24
3157 7752 1.527380 GGACTGGCGGTTCCAACAA 60.527 57.895 0.00 0.00 46.01 2.83
3158 7753 1.652563 GACTGGCGGTTCCAACAAC 59.347 57.895 0.00 0.00 46.01 3.32
3159 7754 0.818040 GACTGGCGGTTCCAACAACT 60.818 55.000 0.00 0.00 46.01 3.16
3160 7755 0.818040 ACTGGCGGTTCCAACAACTC 60.818 55.000 0.00 0.00 46.01 3.01
3161 7756 1.515521 CTGGCGGTTCCAACAACTCC 61.516 60.000 0.00 0.00 46.01 3.85
3212 7807 0.324645 ATGGCAAGGGGTTCATCCAC 60.325 55.000 0.00 0.00 40.64 4.02
3223 7818 2.232941 GGTTCATCCACGTCACCTTCTA 59.767 50.000 0.00 0.00 35.97 2.10
3225 7820 1.471287 TCATCCACGTCACCTTCTACG 59.529 52.381 0.00 0.00 44.47 3.51
3269 7864 2.254546 ATTTCTGCGTCCACTTCACA 57.745 45.000 0.00 0.00 0.00 3.58
3293 7918 2.616510 CGGTCTGAAGCTCTCCCATTTT 60.617 50.000 0.00 0.00 0.00 1.82
3297 7922 2.559668 CTGAAGCTCTCCCATTTTGCAA 59.440 45.455 0.00 0.00 0.00 4.08
3346 8554 2.956964 CATCGTTCTCCTCCGCGC 60.957 66.667 0.00 0.00 0.00 6.86
3368 8576 1.782752 CCCCTGGGTGATCAATACCAT 59.217 52.381 12.71 0.00 40.03 3.55
3389 8597 1.632409 AGCTTGGACCATGACATCAGT 59.368 47.619 11.47 0.00 0.00 3.41
3443 9447 2.668632 GACCCATCCCTCACGCAA 59.331 61.111 0.00 0.00 0.00 4.85
3464 9468 3.782443 CCGCACCCCAGACCCTAC 61.782 72.222 0.00 0.00 0.00 3.18
3487 9491 1.276421 ACTCCTCGACCATCAAACCAG 59.724 52.381 0.00 0.00 0.00 4.00
3492 9496 1.003003 TCGACCATCAAACCAGCATCA 59.997 47.619 0.00 0.00 0.00 3.07
3511 9515 2.126346 GCGCCACTGCAACAATCC 60.126 61.111 0.00 0.00 37.32 3.01
3602 9606 1.391933 TACACCATCGCCTCGCTCAT 61.392 55.000 0.00 0.00 0.00 2.90
3634 9638 3.606687 GGAAAATCATACCACCTCGTGT 58.393 45.455 0.00 0.00 0.00 4.49
3660 9664 3.410628 TCCGATGCCATGGCCTGT 61.411 61.111 33.44 19.50 41.09 4.00
3676 9680 0.179062 CTGTAGCAGGCAGACCATCC 60.179 60.000 0.00 0.00 39.06 3.51
3692 9696 0.618458 ATCCTGCTGGCCGTAAAGAA 59.382 50.000 4.42 0.00 0.00 2.52
3732 9736 3.185246 ACTTCCATGACGATCACCATC 57.815 47.619 0.00 0.00 0.00 3.51
3751 9755 2.357034 GAGGAAAGCGTGGCACGA 60.357 61.111 40.94 0.00 46.05 4.35
3799 9803 1.081175 CTCTTCTGCGACGTGCTCA 60.081 57.895 0.00 0.00 46.63 4.26
3813 9817 2.264480 CTCACCGCGGATGGACAA 59.736 61.111 35.90 9.21 0.00 3.18
3875 9879 4.041198 TGAAGACAAGGTTTTCGATAGGGT 59.959 41.667 0.00 0.00 30.64 4.34
3876 9880 4.635699 AGACAAGGTTTTCGATAGGGTT 57.364 40.909 0.00 0.00 0.00 4.11
3932 9936 5.415389 TCAATGGTGTCATCAAGTACATTGG 59.585 40.000 12.70 0.00 42.18 3.16
4000 10004 3.914426 ACACCTTAGATGGATGGTCAC 57.086 47.619 0.00 0.00 0.00 3.67
4032 10036 3.264947 GAGCATGCAGATTACAGACACA 58.735 45.455 21.98 0.00 0.00 3.72
4060 10064 8.339714 TGTCGAAAAAGTTTAAGTTGGACTATG 58.660 33.333 12.15 0.00 32.07 2.23
4061 10065 8.340443 GTCGAAAAAGTTTAAGTTGGACTATGT 58.660 33.333 6.47 0.00 0.00 2.29
4074 10078 3.118261 TGGACTATGTTCTTGATGCCTCC 60.118 47.826 0.00 0.00 0.00 4.30
4087 10091 2.375014 TGCCTCCGACATACCTGATA 57.625 50.000 0.00 0.00 0.00 2.15
4092 10096 3.072211 CTCCGACATACCTGATACGCTA 58.928 50.000 0.00 0.00 0.00 4.26
4110 10114 2.489329 GCTAAAGCTGAAGGTTGATGCA 59.511 45.455 0.00 0.00 38.21 3.96
4129 10133 0.035458 AGGTACTGCTCAGCCAACAC 59.965 55.000 0.00 0.00 37.18 3.32
4157 10161 1.417890 GCTACACATAGGTCAGCCCAT 59.582 52.381 0.22 0.00 34.66 4.00
4169 10173 4.119363 GCCCATCCTGAGCCTGCA 62.119 66.667 0.00 0.00 0.00 4.41
4173 10177 0.183014 CCATCCTGAGCCTGCAAGAT 59.817 55.000 0.00 0.00 34.07 2.40
4188 10192 6.682113 GCCTGCAAGATGATGACATTGTTTAT 60.682 38.462 0.00 0.00 36.82 1.40
4197 10201 4.764679 TGACATTGTTTATTTGCTCGCT 57.235 36.364 0.00 0.00 0.00 4.93
4215 10219 1.329256 CTAAGGTCGACCATCGGGAT 58.671 55.000 35.00 11.05 40.88 3.85
4222 10226 0.747255 CGACCATCGGGATGAAGACT 59.253 55.000 10.16 0.00 41.20 3.24
4262 10266 1.138069 TGTCGACACCAAGAGCAAGAA 59.862 47.619 15.76 0.00 0.00 2.52
4266 10270 3.509967 TCGACACCAAGAGCAAGAAGATA 59.490 43.478 0.00 0.00 0.00 1.98
4267 10271 4.021456 TCGACACCAAGAGCAAGAAGATAA 60.021 41.667 0.00 0.00 0.00 1.75
4268 10272 4.328440 CGACACCAAGAGCAAGAAGATAAG 59.672 45.833 0.00 0.00 0.00 1.73
4269 10273 4.583871 ACACCAAGAGCAAGAAGATAAGG 58.416 43.478 0.00 0.00 0.00 2.69
4270 10274 3.944015 CACCAAGAGCAAGAAGATAAGGG 59.056 47.826 0.00 0.00 0.00 3.95
4271 10275 3.054065 ACCAAGAGCAAGAAGATAAGGGG 60.054 47.826 0.00 0.00 0.00 4.79
4272 10276 3.200825 CCAAGAGCAAGAAGATAAGGGGA 59.799 47.826 0.00 0.00 0.00 4.81
4274 10278 3.730269 AGAGCAAGAAGATAAGGGGAGT 58.270 45.455 0.00 0.00 0.00 3.85
4275 10279 3.454082 AGAGCAAGAAGATAAGGGGAGTG 59.546 47.826 0.00 0.00 0.00 3.51
4277 10281 3.198853 AGCAAGAAGATAAGGGGAGTGTC 59.801 47.826 0.00 0.00 0.00 3.67
4278 10282 3.198853 GCAAGAAGATAAGGGGAGTGTCT 59.801 47.826 0.00 0.00 0.00 3.41
4279 10283 4.764172 CAAGAAGATAAGGGGAGTGTCTG 58.236 47.826 0.00 0.00 0.00 3.51
4280 10284 4.338795 AGAAGATAAGGGGAGTGTCTGA 57.661 45.455 0.00 0.00 0.00 3.27
4281 10285 4.285863 AGAAGATAAGGGGAGTGTCTGAG 58.714 47.826 0.00 0.00 0.00 3.35
4282 10286 3.767309 AGATAAGGGGAGTGTCTGAGT 57.233 47.619 0.00 0.00 0.00 3.41
4283 10287 4.067944 AGATAAGGGGAGTGTCTGAGTT 57.932 45.455 0.00 0.00 0.00 3.01
4284 10288 4.430441 AGATAAGGGGAGTGTCTGAGTTT 58.570 43.478 0.00 0.00 0.00 2.66
4285 10289 2.938956 AAGGGGAGTGTCTGAGTTTG 57.061 50.000 0.00 0.00 0.00 2.93
4288 10292 0.951040 GGGAGTGTCTGAGTTTGGCG 60.951 60.000 0.00 0.00 0.00 5.69
4289 10293 0.249911 GGAGTGTCTGAGTTTGGCGT 60.250 55.000 0.00 0.00 0.00 5.68
4290 10294 1.140816 GAGTGTCTGAGTTTGGCGTC 58.859 55.000 0.00 0.00 0.00 5.19
4291 10295 0.249911 AGTGTCTGAGTTTGGCGTCC 60.250 55.000 0.00 0.00 0.00 4.79
4292 10296 0.531974 GTGTCTGAGTTTGGCGTCCA 60.532 55.000 0.00 0.00 0.00 4.02
4293 10297 0.179234 TGTCTGAGTTTGGCGTCCAA 59.821 50.000 7.15 7.15 42.29 3.53
4383 10657 9.857656 CCAGGTAATCATATTATTGCATCCTAT 57.142 33.333 0.00 0.00 0.00 2.57
4395 10669 5.378292 TTGCATCCTATAGCTAGAGTTCG 57.622 43.478 14.08 3.21 0.00 3.95
4423 10697 0.744874 CTCTCCATGCCATTGCCAAG 59.255 55.000 0.00 0.00 36.33 3.61
4424 10698 0.332293 TCTCCATGCCATTGCCAAGA 59.668 50.000 0.00 0.00 36.33 3.02
4434 10708 3.195396 GCCATTGCCAAGATGGAACTTTA 59.805 43.478 7.29 0.00 45.59 1.85
4448 10722 4.020485 TGGAACTTTACTAGTGAAGAGCCC 60.020 45.833 28.50 23.38 37.12 5.19
4479 10753 6.067263 TGGTGCTGTTATTCAGTTGTTTAC 57.933 37.500 0.00 0.00 45.23 2.01
4482 10756 5.009210 GTGCTGTTATTCAGTTGTTTACCCA 59.991 40.000 0.00 0.00 45.23 4.51
4500 10775 3.259123 ACCCATCAGATTTTTGGTTGCTC 59.741 43.478 0.00 0.00 0.00 4.26
4520 10795 7.094508 TGCTCAAGACATGTTTTTCTTGTTA 57.905 32.000 19.03 8.62 46.01 2.41
4521 10796 7.715657 TGCTCAAGACATGTTTTTCTTGTTAT 58.284 30.769 19.03 0.00 46.01 1.89
4522 10797 8.196771 TGCTCAAGACATGTTTTTCTTGTTATT 58.803 29.630 19.03 0.00 46.01 1.40
4523 10798 8.482429 GCTCAAGACATGTTTTTCTTGTTATTG 58.518 33.333 19.03 10.21 46.01 1.90
4524 10799 9.520204 CTCAAGACATGTTTTTCTTGTTATTGT 57.480 29.630 19.03 0.00 46.01 2.71
4525 10800 9.868277 TCAAGACATGTTTTTCTTGTTATTGTT 57.132 25.926 19.03 0.00 46.01 2.83
4533 10808 9.677567 TGTTTTTCTTGTTATTGTTAGATCAGC 57.322 29.630 0.00 0.00 0.00 4.26
4534 10809 9.129209 GTTTTTCTTGTTATTGTTAGATCAGCC 57.871 33.333 0.00 0.00 0.00 4.85
4535 10810 7.391148 TTTCTTGTTATTGTTAGATCAGCCC 57.609 36.000 0.00 0.00 0.00 5.19
4536 10811 5.437060 TCTTGTTATTGTTAGATCAGCCCC 58.563 41.667 0.00 0.00 0.00 5.80
4537 10812 4.853468 TGTTATTGTTAGATCAGCCCCA 57.147 40.909 0.00 0.00 0.00 4.96
4538 10813 4.780815 TGTTATTGTTAGATCAGCCCCAG 58.219 43.478 0.00 0.00 0.00 4.45
4539 10814 4.473196 TGTTATTGTTAGATCAGCCCCAGA 59.527 41.667 0.00 0.00 0.00 3.86
4540 10815 5.132648 TGTTATTGTTAGATCAGCCCCAGAT 59.867 40.000 0.00 0.00 0.00 2.90
4541 10816 3.845781 TTGTTAGATCAGCCCCAGATC 57.154 47.619 0.00 0.00 41.68 2.75
4542 10817 2.763039 TGTTAGATCAGCCCCAGATCA 58.237 47.619 6.03 0.00 43.35 2.92
4565 10840 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4607 10900 4.039245 CAGTCCCAACTCTGAAGAACACTA 59.961 45.833 0.00 0.00 31.71 2.74
4613 10906 5.696724 CCAACTCTGAAGAACACTAACGAAT 59.303 40.000 0.00 0.00 0.00 3.34
4617 10910 6.433404 ACTCTGAAGAACACTAACGAATAGGA 59.567 38.462 0.00 0.00 35.81 2.94
4637 10930 4.656112 AGGAAAAACAGAGAGGAGACAGAA 59.344 41.667 0.00 0.00 0.00 3.02
4641 10934 7.013750 GGAAAAACAGAGAGGAGACAGAATTTT 59.986 37.037 0.00 0.00 0.00 1.82
4644 10937 3.370366 CAGAGAGGAGACAGAATTTTGCG 59.630 47.826 0.00 0.00 0.00 4.85
4657 10950 2.455295 TTTTGCGACGCGTAAAAACT 57.545 40.000 13.97 0.00 45.01 2.66
4669 10962 3.600684 GCGTAAAAACTTTGCGCCTTTTC 60.601 43.478 19.50 0.00 38.51 2.29
4670 10963 3.548268 CGTAAAAACTTTGCGCCTTTTCA 59.452 39.130 4.18 0.00 0.00 2.69
4686 10979 7.411912 GCGCCTTTTCATTTCTTCCTTTTATTC 60.412 37.037 0.00 0.00 0.00 1.75
4699 10992 9.635520 TCTTCCTTTTATTCTCTACGTAACAAG 57.364 33.333 0.00 0.00 0.00 3.16
4706 10999 2.227149 TCTCTACGTAACAAGCTCGCAA 59.773 45.455 0.00 0.00 0.00 4.85
4713 11006 0.318107 AACAAGCTCGCAACATGCAC 60.318 50.000 2.99 0.00 45.36 4.57
4736 11029 3.379445 ACGATCCGCTTGACCCGT 61.379 61.111 0.00 0.00 32.76 5.28
4746 11039 2.556840 CTTGACCCGTGCCATCCCAT 62.557 60.000 0.00 0.00 0.00 4.00
4761 11054 1.544825 CCCATGGACAGAGTCGTGGT 61.545 60.000 15.22 0.00 37.33 4.16
4762 11055 0.321671 CCATGGACAGAGTCGTGGTT 59.678 55.000 5.56 0.00 35.63 3.67
4764 11057 0.321671 ATGGACAGAGTCGTGGTTGG 59.678 55.000 0.00 0.00 32.65 3.77
4793 11086 5.925969 CCCATGATTACAACAACAAAGGAAC 59.074 40.000 0.00 0.00 0.00 3.62
4810 11103 7.016268 ACAAAGGAACCTATGACTAAGTCTGAA 59.984 37.037 0.00 0.00 33.15 3.02
4817 11110 8.423906 ACCTATGACTAAGTCTGAAGAAAGAA 57.576 34.615 0.00 0.00 33.15 2.52
4836 11129 4.161102 AGAACTAGCCTGACACTAACCTT 58.839 43.478 0.00 0.00 0.00 3.50
4872 11165 3.648982 CCTGAGCGCGCACACAAA 61.649 61.111 35.10 10.17 0.00 2.83
4884 11177 3.105203 CGCACACAAAACGTTTCAGAAT 58.895 40.909 15.01 0.00 0.00 2.40
4889 11182 7.514435 CGCACACAAAACGTTTCAGAATTATTT 60.514 33.333 15.01 0.00 0.00 1.40
4924 11217 8.620416 TGAACATGCAATACATTATGGTTAGAC 58.380 33.333 0.00 0.00 36.64 2.59
4925 11218 8.752005 AACATGCAATACATTATGGTTAGACT 57.248 30.769 0.00 0.00 36.64 3.24
4930 11223 7.826744 TGCAATACATTATGGTTAGACTGAACA 59.173 33.333 0.00 0.00 0.00 3.18
4933 11226 9.959721 AATACATTATGGTTAGACTGAACAAGT 57.040 29.630 0.00 0.00 43.85 3.16
4954 11247 4.625800 GCCTTGTGCCTCAGGTAG 57.374 61.111 0.00 0.00 0.00 3.18
4962 11255 2.216898 GTGCCTCAGGTAGATTGATGC 58.783 52.381 0.00 0.00 36.92 3.91
4978 11271 7.102346 AGATTGATGCATAGGATAGTTAGTGC 58.898 38.462 0.00 0.00 0.00 4.40
4986 11279 7.147655 TGCATAGGATAGTTAGTGCTTTTCTCT 60.148 37.037 0.00 0.00 33.95 3.10
5002 11295 7.821846 TGCTTTTCTCTCTTTAAATCTCTCTCC 59.178 37.037 0.00 0.00 0.00 3.71
5003 11296 7.279981 GCTTTTCTCTCTTTAAATCTCTCTCCC 59.720 40.741 0.00 0.00 0.00 4.30
5004 11297 8.442660 TTTTCTCTCTTTAAATCTCTCTCCCT 57.557 34.615 0.00 0.00 0.00 4.20
5005 11298 7.654022 TTCTCTCTTTAAATCTCTCTCCCTC 57.346 40.000 0.00 0.00 0.00 4.30
5011 11304 7.418378 TCTTTAAATCTCTCTCCCTCTCTCTT 58.582 38.462 0.00 0.00 0.00 2.85
5019 11312 6.042781 TCTCTCTCCCTCTCTCTTATCTGTAC 59.957 46.154 0.00 0.00 0.00 2.90
5038 11349 3.430042 ACTCGGTTACTACTCCTCACA 57.570 47.619 0.00 0.00 0.00 3.58
5049 11361 8.693625 GTTACTACTCCTCACAATGTAACCTAT 58.306 37.037 0.00 0.00 34.98 2.57
5063 11375 4.730392 TGTAACCTATGAGACCCTCCTCTA 59.270 45.833 0.00 0.00 34.38 2.43
5078 11390 7.183460 ACCCTCCTCTAGTCATATATAACACC 58.817 42.308 0.00 0.00 0.00 4.16
5082 11394 5.353400 CCTCTAGTCATATATAACACCGCGA 59.647 44.000 8.23 0.00 0.00 5.87
5123 11435 4.054671 GAGACGCTTCCATTATTCTCCAG 58.945 47.826 0.00 0.00 0.00 3.86
5130 11442 6.479884 GCTTCCATTATTCTCCAGATGGTAT 58.520 40.000 0.00 0.00 39.95 2.73
5134 11446 8.138928 TCCATTATTCTCCAGATGGTATACAG 57.861 38.462 5.01 0.00 39.95 2.74
5137 11449 9.029368 CATTATTCTCCAGATGGTATACAGAGA 57.971 37.037 5.01 3.56 36.34 3.10
5174 11486 2.921834 TCTAGCTTGTACCCTCCACT 57.078 50.000 0.00 0.00 0.00 4.00
5179 11491 1.404315 GCTTGTACCCTCCACTTCTCG 60.404 57.143 0.00 0.00 0.00 4.04
5183 11495 2.169330 GTACCCTCCACTTCTCGTTCT 58.831 52.381 0.00 0.00 0.00 3.01
5212 11524 5.806818 TCATCTCTATCGTCCCTAACCTAG 58.193 45.833 0.00 0.00 0.00 3.02
5221 11533 3.130693 CGTCCCTAACCTAGGTTCTTCAG 59.869 52.174 30.38 20.78 44.73 3.02
5224 11536 2.170817 CCTAACCTAGGTTCTTCAGCCC 59.829 54.545 30.38 0.00 41.18 5.19
5247 11559 2.683465 CCCATCCCCTCACCACCAG 61.683 68.421 0.00 0.00 0.00 4.00
5309 11621 0.608640 CACCTCTGAACCGCTTACCT 59.391 55.000 0.00 0.00 0.00 3.08
5315 11627 1.180456 TGAACCGCTTACCTGGACGA 61.180 55.000 0.00 0.00 0.00 4.20
5345 11657 0.393537 CTTGGAAGCTCAAGCCCGAT 60.394 55.000 2.51 0.00 43.38 4.18
5347 11659 1.267574 TGGAAGCTCAAGCCCGATCT 61.268 55.000 0.00 0.00 43.38 2.75
5355 11667 3.742640 GCTCAAGCCCGATCTCAAATACT 60.743 47.826 0.00 0.00 34.31 2.12
5361 11673 0.861837 CGATCTCAAATACTGGGCGC 59.138 55.000 0.00 0.00 0.00 6.53
5371 11683 4.367039 AATACTGGGCGCTGGTTTATAT 57.633 40.909 7.64 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 8.545229 TTGTTGTTTTTGTGATGAACATTTCT 57.455 26.923 0.00 0.00 38.99 2.52
72 73 9.604626 TTTTGTTGTTTTTGTGATGAACATTTC 57.395 25.926 0.00 0.00 38.99 2.17
73 74 9.956720 TTTTTGTTGTTTTTGTGATGAACATTT 57.043 22.222 0.00 0.00 38.99 2.32
83 85 4.377153 GGCGTTGTTTTTGTTGTTTTTGTG 59.623 37.500 0.00 0.00 0.00 3.33
97 99 4.082136 TGTTTTGGACTAAAGGCGTTGTTT 60.082 37.500 0.00 0.00 0.00 2.83
103 105 3.982576 ACTTGTTTTGGACTAAAGGCG 57.017 42.857 0.00 0.00 0.00 5.52
115 117 2.767644 AGCCTACCCCAACTTGTTTT 57.232 45.000 0.00 0.00 0.00 2.43
303 305 7.910304 TGGTGGAACAATTTTTAAAATTCACG 58.090 30.769 12.14 5.33 44.16 4.35
515 523 7.662604 ACTCGTGACCTTATTTAAAATCGTT 57.337 32.000 0.00 0.00 0.00 3.85
549 557 6.264970 TCTCAATTTGGTGATGTCATGAACAA 59.735 34.615 0.00 0.00 42.37 2.83
554 562 5.413523 TCACTCTCAATTTGGTGATGTCATG 59.586 40.000 0.00 0.00 34.38 3.07
566 574 6.463049 CCGGGATACACTATCACTCTCAATTT 60.463 42.308 0.00 0.00 36.44 1.82
581 589 0.532862 CCTGCATCACCGGGATACAC 60.533 60.000 6.32 0.20 33.95 2.90
632 640 0.749649 AGGTCCATGCGTTGCAAAAA 59.250 45.000 0.00 0.00 43.62 1.94
633 641 0.749649 AAGGTCCATGCGTTGCAAAA 59.250 45.000 0.00 0.00 43.62 2.44
634 642 0.749649 AAAGGTCCATGCGTTGCAAA 59.250 45.000 0.00 0.00 43.62 3.68
635 643 0.749649 AAAAGGTCCATGCGTTGCAA 59.250 45.000 0.00 0.00 43.62 4.08
636 644 0.749649 AAAAAGGTCCATGCGTTGCA 59.250 45.000 0.00 0.00 44.86 4.08
637 645 1.139163 CAAAAAGGTCCATGCGTTGC 58.861 50.000 0.00 0.00 0.00 4.17
638 646 1.139163 GCAAAAAGGTCCATGCGTTG 58.861 50.000 0.00 0.00 0.00 4.10
639 647 1.039856 AGCAAAAAGGTCCATGCGTT 58.960 45.000 0.00 0.00 43.39 4.84
640 648 1.812571 CTAGCAAAAAGGTCCATGCGT 59.187 47.619 0.00 0.00 43.39 5.24
641 649 1.812571 ACTAGCAAAAAGGTCCATGCG 59.187 47.619 0.00 0.00 43.39 4.73
642 650 4.261801 TCTACTAGCAAAAAGGTCCATGC 58.738 43.478 0.00 0.00 39.06 4.06
643 651 6.206634 TGTTTCTACTAGCAAAAAGGTCCATG 59.793 38.462 0.00 0.00 0.00 3.66
644 652 6.303839 TGTTTCTACTAGCAAAAAGGTCCAT 58.696 36.000 0.00 0.00 0.00 3.41
645 653 5.686753 TGTTTCTACTAGCAAAAAGGTCCA 58.313 37.500 0.00 0.00 0.00 4.02
646 654 6.628919 TTGTTTCTACTAGCAAAAAGGTCC 57.371 37.500 0.00 0.00 0.00 4.46
647 655 7.927048 TCTTTGTTTCTACTAGCAAAAAGGTC 58.073 34.615 0.00 0.00 31.61 3.85
648 656 7.875327 TCTTTGTTTCTACTAGCAAAAAGGT 57.125 32.000 0.00 0.00 31.61 3.50
649 657 9.581099 TTTTCTTTGTTTCTACTAGCAAAAAGG 57.419 29.630 0.00 0.00 31.61 3.11
670 678 4.394729 TCCTTGTTACTCGCCAATTTTCT 58.605 39.130 0.00 0.00 0.00 2.52
734 742 9.753669 GTTTTGTTTTTCGTTTCATTTCATTCT 57.246 25.926 0.00 0.00 0.00 2.40
762 770 1.847328 CCGGCTTGGTCCCTTATTTT 58.153 50.000 0.00 0.00 0.00 1.82
777 785 4.487412 CCCAGTCGACGTACCGGC 62.487 72.222 10.46 0.00 0.00 6.13
806 814 8.048514 TGGATATCAATTCAGAATCAGTGTTGA 58.951 33.333 4.83 0.00 37.81 3.18
811 819 6.002704 GGCTGGATATCAATTCAGAATCAGT 58.997 40.000 4.83 0.00 40.77 3.41
819 827 2.054021 TCGGGGCTGGATATCAATTCA 58.946 47.619 4.83 0.00 0.00 2.57
845 853 5.004726 GTCGATCAATTTTTATGCAGGCAAC 59.995 40.000 0.00 0.00 0.00 4.17
859 867 1.227263 CGCCGAGGGTCGATCAATT 60.227 57.895 0.00 0.00 43.74 2.32
860 868 2.417516 CGCCGAGGGTCGATCAAT 59.582 61.111 0.00 0.00 43.74 2.57
861 869 3.833645 CCGCCGAGGGTCGATCAA 61.834 66.667 0.00 0.00 43.74 2.57
962 970 0.590230 GGAAGACTCGTCGATCTGCG 60.590 60.000 0.00 0.00 42.69 5.18
1015 1023 1.131883 CTCTTCATTGGCGCCTTCTTG 59.868 52.381 29.70 18.63 0.00 3.02
1054 1062 0.034767 CCATGAGCAGGTGGACACAT 60.035 55.000 4.69 0.00 37.72 3.21
1095 1103 2.217510 AGTCAAGGAGGACGAAGCTA 57.782 50.000 0.00 0.00 42.62 3.32
1142 1150 2.638480 TCGCAGCTTATTGCCCTAAT 57.362 45.000 0.00 0.00 44.23 1.73
1157 1165 1.443702 CGTTCGACACCTCATCGCA 60.444 57.895 0.00 0.00 39.46 5.10
1161 1169 1.215647 GGCTCGTTCGACACCTCAT 59.784 57.895 0.00 0.00 0.00 2.90
1162 1170 2.649034 GGCTCGTTCGACACCTCA 59.351 61.111 0.00 0.00 0.00 3.86
1233 1241 1.521457 ACTCACACACGCACACCTG 60.521 57.895 0.00 0.00 0.00 4.00
1245 1253 1.506309 GCAATGGTCACGCACTCACA 61.506 55.000 0.00 0.00 0.00 3.58
1253 1261 1.082821 CACACACGCAATGGTCACG 60.083 57.895 0.00 0.00 0.00 4.35
1254 1262 1.370414 GCACACACGCAATGGTCAC 60.370 57.895 0.00 0.00 0.00 3.67
1255 1263 1.821332 TGCACACACGCAATGGTCA 60.821 52.632 0.00 0.00 39.45 4.02
1282 1313 0.041312 GCGCCAACTAACACACAGTG 60.041 55.000 0.00 0.00 39.75 3.66
1283 1314 0.462937 TGCGCCAACTAACACACAGT 60.463 50.000 4.18 0.00 0.00 3.55
1375 1420 2.603473 CACTCTCCCACGTCCCCA 60.603 66.667 0.00 0.00 0.00 4.96
1448 5793 4.567597 ACACACGGTGGGAGGGGA 62.568 66.667 18.87 0.00 37.94 4.81
1456 5801 1.841663 GCCAGCTACAACACACGGTG 61.842 60.000 6.58 6.58 39.75 4.94
1457 5803 1.597027 GCCAGCTACAACACACGGT 60.597 57.895 0.00 0.00 0.00 4.83
1489 5841 1.003355 CGCCTTTCCCTTGAGCTCA 60.003 57.895 13.74 13.74 0.00 4.26
1496 5848 2.258726 GCACGAACGCCTTTCCCTT 61.259 57.895 0.00 0.00 0.00 3.95
1523 5881 1.137513 CAAGGACACGACGAGGTTTC 58.862 55.000 0.00 0.00 0.00 2.78
1532 5891 2.698797 AGGAAGAAGAACAAGGACACGA 59.301 45.455 0.00 0.00 0.00 4.35
1570 5946 2.967397 CCGTGGCTCGAACCTACA 59.033 61.111 10.96 0.00 42.86 2.74
1573 5951 3.936203 TTGCCGTGGCTCGAACCT 61.936 61.111 12.84 0.00 42.86 3.50
1609 5987 4.400961 GCCAGTCCCTCGCAGCTT 62.401 66.667 0.00 0.00 0.00 3.74
1845 6238 0.667792 AGCTTGTCCTTCTTCGCGAC 60.668 55.000 9.15 0.00 0.00 5.19
1864 6257 2.292794 CTAAGGAGGTAGGCGCGCAA 62.293 60.000 34.42 18.08 0.00 4.85
1881 6276 0.033405 AGTTCTCCGCTAGGGCACTA 60.033 55.000 0.19 0.00 38.60 2.74
1890 6285 1.339055 TGCAGCAATAAGTTCTCCGCT 60.339 47.619 0.00 0.00 0.00 5.52
1902 6297 3.058160 GACGCCACCTGCAGCAAT 61.058 61.111 8.66 0.00 41.33 3.56
1928 6323 2.867855 GCCCACACCTCTGTCGTGA 61.868 63.158 0.00 0.00 35.17 4.35
1933 6328 4.008933 GCTCGCCCACACCTCTGT 62.009 66.667 0.00 0.00 0.00 3.41
2065 6460 2.357836 CATGCCACCAAGCCTCCT 59.642 61.111 0.00 0.00 0.00 3.69
2120 6515 0.992802 CTTCTTTACGAGAGCCGCAC 59.007 55.000 0.00 0.00 43.32 5.34
2241 6640 1.286880 CCGCTTGTCAAAGGCCTTG 59.713 57.895 21.33 13.47 33.68 3.61
2576 6993 2.254651 GCTCGTTCGACACCTCGT 59.745 61.111 0.00 0.00 41.02 4.18
2966 7535 3.246112 CACACGGGTTGGAGGGGA 61.246 66.667 0.00 0.00 0.00 4.81
2974 7543 0.534203 CCAGCTACAACACACGGGTT 60.534 55.000 0.00 0.00 0.00 4.11
3002 7572 3.480470 CTTTCCCTTGAGCTCAAACTCA 58.520 45.455 28.16 11.57 44.84 3.41
3003 7573 2.816672 CCTTTCCCTTGAGCTCAAACTC 59.183 50.000 28.16 0.00 35.15 3.01
3004 7574 2.868899 CCTTTCCCTTGAGCTCAAACT 58.131 47.619 28.16 0.00 35.15 2.66
3005 7575 1.270826 GCCTTTCCCTTGAGCTCAAAC 59.729 52.381 28.16 8.25 35.15 2.93
3006 7576 1.620822 GCCTTTCCCTTGAGCTCAAA 58.379 50.000 28.16 12.67 35.15 2.69
3009 7579 0.606673 AACGCCTTTCCCTTGAGCTC 60.607 55.000 6.82 6.82 0.00 4.09
3010 7580 0.606673 GAACGCCTTTCCCTTGAGCT 60.607 55.000 0.00 0.00 0.00 4.09
3011 7581 1.876664 GAACGCCTTTCCCTTGAGC 59.123 57.895 0.00 0.00 0.00 4.26
3012 7582 0.602905 ACGAACGCCTTTCCCTTGAG 60.603 55.000 0.00 0.00 0.00 3.02
3013 7583 0.882927 CACGAACGCCTTTCCCTTGA 60.883 55.000 0.00 0.00 0.00 3.02
3014 7584 1.574428 CACGAACGCCTTTCCCTTG 59.426 57.895 0.00 0.00 0.00 3.61
3015 7585 2.258726 GCACGAACGCCTTTCCCTT 61.259 57.895 0.00 0.00 0.00 3.95
3016 7586 2.668550 GCACGAACGCCTTTCCCT 60.669 61.111 0.00 0.00 0.00 4.20
3042 7613 3.109847 TGGGACACAGCAAGGTTTC 57.890 52.632 0.00 0.00 0.00 2.78
3059 7630 3.265791 CGGAAGGAGGAAGAAGAACATG 58.734 50.000 0.00 0.00 0.00 3.21
3060 7631 2.907042 ACGGAAGGAGGAAGAAGAACAT 59.093 45.455 0.00 0.00 0.00 2.71
3080 7656 3.927758 GCTCGAACCTAAGAGGAAGAAAC 59.072 47.826 0.00 0.00 37.67 2.78
3082 7658 2.496470 GGCTCGAACCTAAGAGGAAGAA 59.504 50.000 0.00 0.00 37.67 2.52
3085 7661 1.933021 TGGCTCGAACCTAAGAGGAA 58.067 50.000 6.39 0.00 37.67 3.36
3088 7664 1.482593 ACCATGGCTCGAACCTAAGAG 59.517 52.381 13.04 0.00 37.54 2.85
3091 7667 2.568062 TGTTACCATGGCTCGAACCTAA 59.432 45.455 13.04 0.00 0.00 2.69
3093 7669 0.981183 TGTTACCATGGCTCGAACCT 59.019 50.000 13.04 0.00 0.00 3.50
3105 7681 2.828520 CTCCTTGCTCTCTCTGTTACCA 59.171 50.000 0.00 0.00 0.00 3.25
3108 7684 2.461695 CCCTCCTTGCTCTCTCTGTTA 58.538 52.381 0.00 0.00 0.00 2.41
3109 7685 1.274712 CCCTCCTTGCTCTCTCTGTT 58.725 55.000 0.00 0.00 0.00 3.16
3110 7686 1.264045 GCCCTCCTTGCTCTCTCTGT 61.264 60.000 0.00 0.00 0.00 3.41
3111 7687 1.263342 TGCCCTCCTTGCTCTCTCTG 61.263 60.000 0.00 0.00 0.00 3.35
3120 7696 4.399395 TCGCAGCTGCCCTCCTTG 62.399 66.667 32.07 16.56 37.91 3.61
3121 7697 4.093291 CTCGCAGCTGCCCTCCTT 62.093 66.667 32.07 0.00 37.91 3.36
3157 7752 4.619227 CGGTGGTGGCGTTGGAGT 62.619 66.667 0.00 0.00 0.00 3.85
3161 7756 4.101790 GATGCGGTGGTGGCGTTG 62.102 66.667 0.00 0.00 0.00 4.10
3212 7807 2.879462 GCGGCGTAGAAGGTGACG 60.879 66.667 9.37 0.00 41.97 4.35
3269 7864 2.355193 GGAGAGCTTCAGACCGCCT 61.355 63.158 0.00 0.00 0.00 5.52
3353 8561 4.074970 CCAAGCTATGGTATTGATCACCC 58.925 47.826 0.00 0.00 44.85 4.61
3368 8576 2.840038 ACTGATGTCATGGTCCAAGCTA 59.160 45.455 0.00 0.00 0.00 3.32
3379 8587 6.788598 AGATGAAGTACTCACTGATGTCAT 57.211 37.500 0.00 0.00 36.69 3.06
3389 8597 4.272748 CCGACGTGATAGATGAAGTACTCA 59.727 45.833 0.00 0.00 38.81 3.41
3428 9432 1.450312 GAGTTGCGTGAGGGATGGG 60.450 63.158 0.00 0.00 0.00 4.00
3487 9491 3.345209 TTGCAGTGGCGCATGATGC 62.345 57.895 10.83 14.28 45.35 3.91
3492 9496 1.213537 GATTGTTGCAGTGGCGCAT 59.786 52.632 10.83 0.00 45.35 4.73
3554 9558 1.579932 CTGCAGTCGTGGTAGTCGT 59.420 57.895 5.25 0.00 0.00 4.34
3621 9625 2.409975 CGAAACAACACGAGGTGGTAT 58.590 47.619 2.20 0.00 37.94 2.73
3634 9638 0.676466 ATGGCATCGGAGCGAAACAA 60.676 50.000 0.00 0.00 39.99 2.83
3660 9664 2.215191 CAGGATGGTCTGCCTGCTA 58.785 57.895 0.00 0.00 44.53 3.49
3676 9680 0.099436 GCATTCTTTACGGCCAGCAG 59.901 55.000 2.24 0.00 0.00 4.24
3683 9687 2.022762 GGCGCGCATTCTTTACGG 59.977 61.111 34.42 0.00 0.00 4.02
3711 9715 3.535561 GATGGTGATCGTCATGGAAGTT 58.464 45.455 5.48 0.00 0.00 2.66
3732 9736 3.423154 GTGCCACGCTTTCCTCCG 61.423 66.667 0.00 0.00 0.00 4.63
3751 9755 1.542375 AGAGGTCAACCCAGCCCAT 60.542 57.895 0.00 0.00 36.42 4.00
3799 9803 2.358247 GTGTTGTCCATCCGCGGT 60.358 61.111 27.15 10.00 0.00 5.68
3813 9817 0.874607 GGACGAAGCGAAGTGTGTGT 60.875 55.000 0.00 0.00 0.00 3.72
3875 9879 1.227147 CGAGAAATCCGCGGGCTAA 60.227 57.895 27.83 5.87 34.36 3.09
3876 9880 2.415843 CGAGAAATCCGCGGGCTA 59.584 61.111 27.83 6.34 34.36 3.93
3932 9936 2.117941 GACAACACGAACCTGCAGCC 62.118 60.000 8.66 0.00 0.00 4.85
3976 9980 2.706190 ACCATCCATCTAAGGTGTAGGC 59.294 50.000 0.00 0.00 32.04 3.93
4000 10004 2.411701 CATGCTCCATTGCGCAGG 59.588 61.111 11.31 10.20 39.82 4.85
4032 10036 7.768240 AGTCCAACTTAAACTTTTTCGACAAT 58.232 30.769 0.00 0.00 0.00 2.71
4060 10064 3.532896 TGTCGGAGGCATCAAGAAC 57.467 52.632 0.00 0.00 36.97 3.01
4074 10078 3.669122 GCTTTAGCGTATCAGGTATGTCG 59.331 47.826 0.00 0.00 0.00 4.35
4092 10096 1.891150 CCTGCATCAACCTTCAGCTTT 59.109 47.619 0.00 0.00 0.00 3.51
4110 10114 0.035458 GTGTTGGCTGAGCAGTACCT 59.965 55.000 6.82 0.00 0.00 3.08
4129 10133 3.128764 TGACCTATGTGTAGCGTCTTCAG 59.871 47.826 0.00 0.00 33.20 3.02
4157 10161 1.134189 CATCATCTTGCAGGCTCAGGA 60.134 52.381 0.00 0.00 0.00 3.86
4169 10173 7.699391 CGAGCAAATAAACAATGTCATCATCTT 59.301 33.333 0.00 0.00 32.56 2.40
4173 10177 5.094812 GCGAGCAAATAAACAATGTCATCA 58.905 37.500 0.00 0.00 0.00 3.07
4188 10192 3.117589 GTCGACCTTAGCGAGCAAA 57.882 52.632 3.51 0.00 38.59 3.68
4197 10201 1.037493 CATCCCGATGGTCGACCTTA 58.963 55.000 33.39 16.65 43.74 2.69
4215 10219 0.321564 CCCATCCGTTGCAGTCTTCA 60.322 55.000 0.00 0.00 0.00 3.02
4222 10226 2.115052 AAGCACCCATCCGTTGCA 59.885 55.556 0.00 0.00 0.00 4.08
4262 10266 3.767309 ACTCAGACACTCCCCTTATCT 57.233 47.619 0.00 0.00 0.00 1.98
4266 10270 1.421646 CCAAACTCAGACACTCCCCTT 59.578 52.381 0.00 0.00 0.00 3.95
4267 10271 1.059913 CCAAACTCAGACACTCCCCT 58.940 55.000 0.00 0.00 0.00 4.79
4268 10272 0.606673 GCCAAACTCAGACACTCCCC 60.607 60.000 0.00 0.00 0.00 4.81
4269 10273 0.951040 CGCCAAACTCAGACACTCCC 60.951 60.000 0.00 0.00 0.00 4.30
4270 10274 0.249911 ACGCCAAACTCAGACACTCC 60.250 55.000 0.00 0.00 0.00 3.85
4271 10275 1.140816 GACGCCAAACTCAGACACTC 58.859 55.000 0.00 0.00 0.00 3.51
4272 10276 0.249911 GGACGCCAAACTCAGACACT 60.250 55.000 0.00 0.00 0.00 3.55
4274 10278 0.179234 TTGGACGCCAAACTCAGACA 59.821 50.000 8.58 0.00 40.92 3.41
4275 10279 1.264288 CTTTGGACGCCAAACTCAGAC 59.736 52.381 16.73 0.00 46.92 3.51
4277 10281 1.593196 TCTTTGGACGCCAAACTCAG 58.407 50.000 16.73 9.67 46.92 3.35
4278 10282 1.673920 GTTCTTTGGACGCCAAACTCA 59.326 47.619 16.73 5.00 46.92 3.41
4279 10283 1.947456 AGTTCTTTGGACGCCAAACTC 59.053 47.619 16.73 11.24 46.92 3.01
4280 10284 2.052782 AGTTCTTTGGACGCCAAACT 57.947 45.000 16.73 12.10 46.92 2.66
4281 10285 2.857748 CAAAGTTCTTTGGACGCCAAAC 59.142 45.455 16.73 10.44 46.92 2.93
4283 10287 2.861462 CAAAGTTCTTTGGACGCCAA 57.139 45.000 15.08 7.15 42.29 4.52
4291 10295 6.183360 ACAAGTGATAACCCCAAAGTTCTTTG 60.183 38.462 15.72 15.72 0.00 2.77
4292 10296 5.897250 ACAAGTGATAACCCCAAAGTTCTTT 59.103 36.000 0.00 0.00 0.00 2.52
4293 10297 5.454966 ACAAGTGATAACCCCAAAGTTCTT 58.545 37.500 0.00 0.00 0.00 2.52
4297 10555 6.130569 TGTAAACAAGTGATAACCCCAAAGT 58.869 36.000 0.00 0.00 0.00 2.66
4383 10657 5.823570 AGAGCATAGAAACGAACTCTAGCTA 59.176 40.000 0.00 0.00 33.68 3.32
4385 10659 4.927422 AGAGCATAGAAACGAACTCTAGC 58.073 43.478 0.00 0.00 32.91 3.42
4395 10669 2.923121 TGGCATGGAGAGCATAGAAAC 58.077 47.619 0.00 0.00 0.00 2.78
4423 10697 5.813157 GGCTCTTCACTAGTAAAGTTCCATC 59.187 44.000 5.66 0.00 35.76 3.51
4424 10698 5.338463 GGGCTCTTCACTAGTAAAGTTCCAT 60.338 44.000 15.86 0.00 35.76 3.41
4434 10708 1.958288 ATGGTGGGCTCTTCACTAGT 58.042 50.000 0.00 0.00 35.61 2.57
4479 10753 3.258872 TGAGCAACCAAAAATCTGATGGG 59.741 43.478 0.00 0.00 38.58 4.00
4482 10756 5.302568 TGTCTTGAGCAACCAAAAATCTGAT 59.697 36.000 0.00 0.00 0.00 2.90
4520 10795 3.718434 TGATCTGGGGCTGATCTAACAAT 59.282 43.478 13.49 0.00 38.85 2.71
4521 10796 3.114606 TGATCTGGGGCTGATCTAACAA 58.885 45.455 13.49 0.00 38.85 2.83
4522 10797 2.763039 TGATCTGGGGCTGATCTAACA 58.237 47.619 13.49 0.00 38.85 2.41
4523 10798 3.118261 TGTTGATCTGGGGCTGATCTAAC 60.118 47.826 13.49 14.28 38.85 2.34
4524 10799 3.114606 TGTTGATCTGGGGCTGATCTAA 58.885 45.455 13.49 6.76 38.85 2.10
4525 10800 2.435805 GTGTTGATCTGGGGCTGATCTA 59.564 50.000 13.49 6.53 38.85 1.98
4526 10801 1.211457 GTGTTGATCTGGGGCTGATCT 59.789 52.381 13.49 0.00 38.85 2.75
4527 10802 1.065199 TGTGTTGATCTGGGGCTGATC 60.065 52.381 0.00 0.00 38.65 2.92
4528 10803 0.994247 TGTGTTGATCTGGGGCTGAT 59.006 50.000 0.00 0.00 0.00 2.90
4529 10804 0.036732 GTGTGTTGATCTGGGGCTGA 59.963 55.000 0.00 0.00 0.00 4.26
4530 10805 0.250858 TGTGTGTTGATCTGGGGCTG 60.251 55.000 0.00 0.00 0.00 4.85
4531 10806 0.250901 GTGTGTGTTGATCTGGGGCT 60.251 55.000 0.00 0.00 0.00 5.19
4532 10807 0.537143 TGTGTGTGTTGATCTGGGGC 60.537 55.000 0.00 0.00 0.00 5.80
4533 10808 1.238439 GTGTGTGTGTTGATCTGGGG 58.762 55.000 0.00 0.00 0.00 4.96
4534 10809 1.603802 GTGTGTGTGTGTTGATCTGGG 59.396 52.381 0.00 0.00 0.00 4.45
4535 10810 2.032054 GTGTGTGTGTGTGTTGATCTGG 59.968 50.000 0.00 0.00 0.00 3.86
4536 10811 2.677337 TGTGTGTGTGTGTGTTGATCTG 59.323 45.455 0.00 0.00 0.00 2.90
4537 10812 2.677836 GTGTGTGTGTGTGTGTTGATCT 59.322 45.455 0.00 0.00 0.00 2.75
4538 10813 2.418280 TGTGTGTGTGTGTGTGTTGATC 59.582 45.455 0.00 0.00 0.00 2.92
4539 10814 2.161410 GTGTGTGTGTGTGTGTGTTGAT 59.839 45.455 0.00 0.00 0.00 2.57
4540 10815 1.533299 GTGTGTGTGTGTGTGTGTTGA 59.467 47.619 0.00 0.00 0.00 3.18
4541 10816 1.265365 TGTGTGTGTGTGTGTGTGTTG 59.735 47.619 0.00 0.00 0.00 3.33
4542 10817 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
4565 10840 0.034896 GAATCCACCCTCACGTGTGT 59.965 55.000 16.51 8.78 31.47 3.72
4607 10900 6.014499 TCTCCTCTCTGTTTTTCCTATTCGTT 60.014 38.462 0.00 0.00 0.00 3.85
4613 10906 5.394738 TCTGTCTCCTCTCTGTTTTTCCTA 58.605 41.667 0.00 0.00 0.00 2.94
4617 10910 7.682981 GCAAAATTCTGTCTCCTCTCTGTTTTT 60.683 37.037 0.00 0.00 0.00 1.94
4637 10930 2.989641 AGTTTTTACGCGTCGCAAAAT 58.010 38.095 18.63 9.98 33.18 1.82
4641 10934 1.732528 CAAAGTTTTTACGCGTCGCA 58.267 45.000 18.63 0.00 0.00 5.10
4657 10950 3.069443 AGGAAGAAATGAAAAGGCGCAAA 59.931 39.130 10.83 0.00 0.00 3.68
4686 10979 2.257974 TGCGAGCTTGTTACGTAGAG 57.742 50.000 2.14 0.00 0.00 2.43
4690 10983 1.194547 CATGTTGCGAGCTTGTTACGT 59.805 47.619 2.14 0.00 0.00 3.57
4706 10999 1.746615 GATCGTGGGCAGTGCATGT 60.747 57.895 18.61 0.00 0.00 3.21
4713 11006 3.197790 CAAGCGGATCGTGGGCAG 61.198 66.667 0.00 0.00 0.00 4.85
4746 11039 1.046472 ACCAACCACGACTCTGTCCA 61.046 55.000 0.00 0.00 0.00 4.02
4764 11057 5.950758 TGTTGTTGTAATCATGGGTGTAC 57.049 39.130 0.00 0.00 0.00 2.90
4773 11066 7.721842 TCATAGGTTCCTTTGTTGTTGTAATCA 59.278 33.333 8.63 0.00 0.00 2.57
4774 11067 8.021396 GTCATAGGTTCCTTTGTTGTTGTAATC 58.979 37.037 8.63 0.00 0.00 1.75
4793 11086 8.527810 AGTTCTTTCTTCAGACTTAGTCATAGG 58.472 37.037 15.23 2.76 34.60 2.57
4810 11103 5.279556 GGTTAGTGTCAGGCTAGTTCTTTCT 60.280 44.000 0.00 0.00 0.00 2.52
4817 11110 4.161102 AGAAAGGTTAGTGTCAGGCTAGT 58.839 43.478 0.00 0.00 0.00 2.57
4836 11129 6.929606 GCTCAGGTTCAGTTTAGACTTTAGAA 59.070 38.462 0.00 0.00 32.54 2.10
4950 11243 8.754080 ACTAACTATCCTATGCATCAATCTACC 58.246 37.037 0.19 0.00 0.00 3.18
4954 11247 7.102346 AGCACTAACTATCCTATGCATCAATC 58.898 38.462 0.19 0.00 35.51 2.67
4962 11255 8.637986 AGAGAGAAAAGCACTAACTATCCTATG 58.362 37.037 0.00 0.00 0.00 2.23
4978 11271 8.539544 AGGGAGAGAGATTTAAAGAGAGAAAAG 58.460 37.037 0.00 0.00 0.00 2.27
4986 11279 6.980577 AGAGAGAGGGAGAGAGATTTAAAGA 58.019 40.000 0.00 0.00 0.00 2.52
5002 11295 4.710324 ACCGAGTACAGATAAGAGAGAGG 58.290 47.826 0.00 0.00 0.00 3.69
5003 11296 6.987992 AGTAACCGAGTACAGATAAGAGAGAG 59.012 42.308 0.00 0.00 0.00 3.20
5004 11297 6.887013 AGTAACCGAGTACAGATAAGAGAGA 58.113 40.000 0.00 0.00 0.00 3.10
5005 11298 7.927629 AGTAGTAACCGAGTACAGATAAGAGAG 59.072 40.741 0.00 0.00 36.54 3.20
5011 11304 6.098838 TGAGGAGTAGTAACCGAGTACAGATA 59.901 42.308 0.00 0.00 36.54 1.98
5019 11312 4.158025 ACATTGTGAGGAGTAGTAACCGAG 59.842 45.833 0.00 0.00 0.00 4.63
5038 11349 4.897051 AGGAGGGTCTCATAGGTTACATT 58.103 43.478 0.00 0.00 31.08 2.71
5049 11361 6.979018 ATATATGACTAGAGGAGGGTCTCA 57.021 41.667 0.00 0.00 36.30 3.27
5063 11375 3.506455 AGCTCGCGGTGTTATATATGACT 59.494 43.478 6.13 0.00 0.00 3.41
5078 11390 4.700037 CTAGACAAGGAGCTCGCG 57.300 61.111 7.83 0.00 0.00 5.87
5174 11486 2.425312 GAGATGAGGCAGAGAACGAGAA 59.575 50.000 0.00 0.00 0.00 2.87
5179 11491 3.568007 ACGATAGAGATGAGGCAGAGAAC 59.432 47.826 0.00 0.00 41.38 3.01
5183 11495 2.509569 GGACGATAGAGATGAGGCAGA 58.490 52.381 0.00 0.00 41.38 4.26
5212 11524 3.056328 GTGGCGGGCTGAAGAACC 61.056 66.667 0.00 0.00 0.00 3.62
5224 11536 4.489771 GTGAGGGGATGGGTGGCG 62.490 72.222 0.00 0.00 0.00 5.69
5247 11559 2.743928 CTGCGCTGAAGGTGGACC 60.744 66.667 9.73 0.00 0.00 4.46
5256 11568 0.812811 GGATGAGATTGCTGCGCTGA 60.813 55.000 19.32 0.00 0.00 4.26
5328 11640 1.221840 GATCGGGCTTGAGCTTCCA 59.778 57.895 2.66 0.00 41.70 3.53
5330 11642 0.176680 TGAGATCGGGCTTGAGCTTC 59.823 55.000 2.66 0.00 41.70 3.86
5345 11657 0.107703 CCAGCGCCCAGTATTTGAGA 60.108 55.000 2.29 0.00 0.00 3.27
5347 11659 0.037590 AACCAGCGCCCAGTATTTGA 59.962 50.000 2.29 0.00 0.00 2.69
5355 11667 0.821711 GCCATATAAACCAGCGCCCA 60.822 55.000 2.29 0.00 0.00 5.36
5361 11673 4.929808 GGTCGATGTAGCCATATAAACCAG 59.070 45.833 0.00 0.00 0.00 4.00
5371 11683 3.179925 AGTACGGTCGATGTAGCCA 57.820 52.632 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.