Multiple sequence alignment - TraesCS3A01G289300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G289300 chr3A 100.000 6127 0 0 1 6127 517667494 517661368 0.000000e+00 11315.0
1 TraesCS3A01G289300 chr3A 88.546 227 22 3 72 294 624860678 624860904 7.830000e-69 272.0
2 TraesCS3A01G289300 chr3B 95.519 5602 193 29 291 5854 524454714 524449133 0.000000e+00 8901.0
3 TraesCS3A01G289300 chr3B 87.983 233 24 3 64 292 8013667 8013435 7.830000e-69 272.0
4 TraesCS3A01G289300 chr3B 96.667 120 3 1 6008 6127 524449141 524449023 1.350000e-46 198.0
5 TraesCS3A01G289300 chr3B 87.805 164 20 0 5845 6008 62969439 62969602 6.270000e-45 193.0
6 TraesCS3A01G289300 chr3B 87.273 165 21 0 5844 6008 679988793 679988629 8.110000e-44 189.0
7 TraesCS3A01G289300 chr3D 95.453 5586 186 28 291 5845 398407515 398401967 0.000000e+00 8846.0
8 TraesCS3A01G289300 chr3D 95.798 119 4 1 6010 6127 398401963 398401845 2.250000e-44 191.0
9 TraesCS3A01G289300 chr3D 87.719 57 4 1 8 64 398407890 398407837 5.130000e-06 63.9
10 TraesCS3A01G289300 chr1B 81.702 1481 267 4 1613 3091 581201188 581202666 0.000000e+00 1230.0
11 TraesCS3A01G289300 chr1B 85.458 557 73 5 994 1549 581200599 581201148 1.920000e-159 573.0
12 TraesCS3A01G289300 chr1B 88.554 166 19 0 5843 6008 469174623 469174788 1.040000e-47 202.0
13 TraesCS3A01G289300 chr1A 81.567 1481 269 4 1613 3091 527951285 527952763 0.000000e+00 1219.0
14 TraesCS3A01G289300 chr1A 88.261 230 23 4 64 289 70214761 70214990 7.830000e-69 272.0
15 TraesCS3A01G289300 chr1D 81.499 1481 270 4 1613 3091 430411219 430412697 0.000000e+00 1214.0
16 TraesCS3A01G289300 chr1D 85.458 557 73 5 994 1549 430410630 430411179 1.920000e-159 573.0
17 TraesCS3A01G289300 chr6A 89.655 232 19 4 64 291 378034469 378034699 2.160000e-74 291.0
18 TraesCS3A01G289300 chr7A 89.030 237 19 6 64 294 646925973 646925738 2.790000e-73 287.0
19 TraesCS3A01G289300 chr7A 88.034 234 24 3 64 293 19929218 19928985 2.180000e-69 274.0
20 TraesCS3A01G289300 chr7A 87.273 165 21 0 5846 6010 400868052 400867888 8.110000e-44 189.0
21 TraesCS3A01G289300 chr2A 89.177 231 20 4 64 289 776160765 776160535 3.620000e-72 283.0
22 TraesCS3A01G289300 chr4A 88.546 227 22 4 69 291 5545536 5545762 7.830000e-69 272.0
23 TraesCS3A01G289300 chr5A 87.712 236 23 5 72 301 703395801 703396036 2.810000e-68 270.0
24 TraesCS3A01G289300 chr5D 87.952 166 20 0 5846 6011 498722069 498721904 4.850000e-46 196.0
25 TraesCS3A01G289300 chr5D 87.273 165 21 0 5846 6010 386668467 386668631 8.110000e-44 189.0
26 TraesCS3A01G289300 chr5D 87.273 165 21 0 5846 6010 431780588 431780424 8.110000e-44 189.0
27 TraesCS3A01G289300 chrUn 87.879 165 20 0 5845 6009 121731861 121732025 1.740000e-45 195.0
28 TraesCS3A01G289300 chr6B 84.615 182 24 3 5833 6011 672632344 672632524 1.750000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G289300 chr3A 517661368 517667494 6126 True 11315.000000 11315 100.0000 1 6127 1 chr3A.!!$R1 6126
1 TraesCS3A01G289300 chr3B 524449023 524454714 5691 True 4549.500000 8901 96.0930 291 6127 2 chr3B.!!$R3 5836
2 TraesCS3A01G289300 chr3D 398401845 398407890 6045 True 3033.633333 8846 92.9900 8 6127 3 chr3D.!!$R1 6119
3 TraesCS3A01G289300 chr1B 581200599 581202666 2067 False 901.500000 1230 83.5800 994 3091 2 chr1B.!!$F2 2097
4 TraesCS3A01G289300 chr1A 527951285 527952763 1478 False 1219.000000 1219 81.5670 1613 3091 1 chr1A.!!$F2 1478
5 TraesCS3A01G289300 chr1D 430410630 430412697 2067 False 893.500000 1214 83.4785 994 3091 2 chr1D.!!$F1 2097

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 221 0.363512 CGTCGCAGTTGATCTCGTTG 59.636 55.000 0.00 0.00 0.00 4.10 F
221 222 0.716108 GTCGCAGTTGATCTCGTTGG 59.284 55.000 0.00 0.00 0.00 3.77 F
258 259 0.736325 ATTGGACCTCGAGAAACGCG 60.736 55.000 15.71 3.53 42.26 6.01 F
268 269 0.928229 GAGAAACGCGGACGCATTAT 59.072 50.000 17.35 8.15 45.53 1.28 F
945 1079 2.035442 GCGGTTTCTGCTGGAGACC 61.035 63.158 0.00 0.00 43.43 3.85 F
3507 3645 1.544724 CGTGTTTTCATCCCCCATGT 58.455 50.000 0.00 0.00 33.66 3.21 F
3986 4126 0.110823 GTGTGCTAGCAAACGAACCG 60.111 55.000 21.94 0.00 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1558 1692 0.827368 GAGGAGGAGGTTGCTGTAGG 59.173 60.000 0.00 0.00 0.00 3.18 R
2013 2150 5.651612 ACTGATCCATATGAATTCCCACA 57.348 39.130 3.65 0.00 0.00 4.17 R
2931 3068 2.615869 CTCAGAACTTCTGCACTAGGC 58.384 52.381 13.24 0.00 43.95 3.93 R
3291 3428 5.366477 ACATCCCAGTTTCAGAAACCAAAAT 59.634 36.000 20.47 8.59 42.34 1.82 R
3974 4114 0.600255 CAGAGACCGGTTCGTTTGCT 60.600 55.000 9.42 0.00 0.00 3.91 R
5031 5173 0.247736 AACTCATCGGTGGAGTCAGC 59.752 55.000 0.00 0.00 44.50 4.26 R
5218 5361 0.672711 GCCCTGGTGTTAGTCGTTCC 60.673 60.000 0.00 0.00 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.969993 TTTTTATGAGCCACAGGTTTTACT 57.030 33.333 0.00 0.00 0.00 2.24
25 26 6.569179 TTTTATGAGCCACAGGTTTTACTC 57.431 37.500 0.00 0.00 0.00 2.59
26 27 2.561478 TGAGCCACAGGTTTTACTCC 57.439 50.000 0.00 0.00 0.00 3.85
27 28 1.073284 TGAGCCACAGGTTTTACTCCC 59.927 52.381 0.00 0.00 0.00 4.30
28 29 1.351350 GAGCCACAGGTTTTACTCCCT 59.649 52.381 0.00 0.00 0.00 4.20
29 30 2.570302 GAGCCACAGGTTTTACTCCCTA 59.430 50.000 0.00 0.00 0.00 3.53
30 31 3.190439 AGCCACAGGTTTTACTCCCTAT 58.810 45.455 0.00 0.00 0.00 2.57
31 32 3.200165 AGCCACAGGTTTTACTCCCTATC 59.800 47.826 0.00 0.00 0.00 2.08
64 65 2.039879 ACAGATTTGTTAGCCGGGACTT 59.960 45.455 2.18 0.00 32.28 3.01
66 67 2.572104 AGATTTGTTAGCCGGGACTTCT 59.428 45.455 2.18 0.00 0.00 2.85
68 69 4.409247 AGATTTGTTAGCCGGGACTTCTAT 59.591 41.667 2.18 0.00 0.00 1.98
70 71 5.881923 TTTGTTAGCCGGGACTTCTATAT 57.118 39.130 2.18 0.00 0.00 0.86
71 72 5.881923 TTGTTAGCCGGGACTTCTATATT 57.118 39.130 2.18 0.00 0.00 1.28
72 73 5.209818 TGTTAGCCGGGACTTCTATATTG 57.790 43.478 2.18 0.00 0.00 1.90
74 75 5.834742 TGTTAGCCGGGACTTCTATATTGTA 59.165 40.000 2.18 0.00 0.00 2.41
75 76 6.015688 TGTTAGCCGGGACTTCTATATTGTAG 60.016 42.308 2.18 0.00 0.00 2.74
77 78 4.281182 AGCCGGGACTTCTATATTGTAGTG 59.719 45.833 2.18 0.00 0.00 2.74
78 79 4.557205 CCGGGACTTCTATATTGTAGTGC 58.443 47.826 6.84 6.84 0.00 4.40
79 80 4.281182 CCGGGACTTCTATATTGTAGTGCT 59.719 45.833 12.90 0.00 0.00 4.40
80 81 5.221461 CCGGGACTTCTATATTGTAGTGCTT 60.221 44.000 12.90 0.00 0.00 3.91
81 82 6.281405 CGGGACTTCTATATTGTAGTGCTTT 58.719 40.000 12.90 0.00 0.00 3.51
83 84 7.501844 GGGACTTCTATATTGTAGTGCTTTCT 58.498 38.462 12.90 0.00 0.00 2.52
84 85 7.654116 GGGACTTCTATATTGTAGTGCTTTCTC 59.346 40.741 12.90 0.00 0.00 2.87
85 86 8.417884 GGACTTCTATATTGTAGTGCTTTCTCT 58.582 37.037 7.82 0.00 0.00 3.10
90 91 9.815306 TCTATATTGTAGTGCTTTCTCTATCCT 57.185 33.333 0.00 0.00 0.00 3.24
93 94 6.360370 TTGTAGTGCTTTCTCTATCCTTGT 57.640 37.500 0.00 0.00 0.00 3.16
95 96 3.604582 AGTGCTTTCTCTATCCTTGTGC 58.395 45.455 0.00 0.00 0.00 4.57
96 97 3.262915 AGTGCTTTCTCTATCCTTGTGCT 59.737 43.478 0.00 0.00 0.00 4.40
98 99 4.457257 GTGCTTTCTCTATCCTTGTGCTTT 59.543 41.667 0.00 0.00 0.00 3.51
99 100 5.643777 GTGCTTTCTCTATCCTTGTGCTTTA 59.356 40.000 0.00 0.00 0.00 1.85
100 101 6.149474 GTGCTTTCTCTATCCTTGTGCTTTAA 59.851 38.462 0.00 0.00 0.00 1.52
101 102 6.149474 TGCTTTCTCTATCCTTGTGCTTTAAC 59.851 38.462 0.00 0.00 0.00 2.01
102 103 6.372937 GCTTTCTCTATCCTTGTGCTTTAACT 59.627 38.462 0.00 0.00 0.00 2.24
103 104 7.094592 GCTTTCTCTATCCTTGTGCTTTAACTT 60.095 37.037 0.00 0.00 0.00 2.66
104 105 8.691661 TTTCTCTATCCTTGTGCTTTAACTTT 57.308 30.769 0.00 0.00 0.00 2.66
105 106 7.672983 TCTCTATCCTTGTGCTTTAACTTTG 57.327 36.000 0.00 0.00 0.00 2.77
106 107 7.450074 TCTCTATCCTTGTGCTTTAACTTTGA 58.550 34.615 0.00 0.00 0.00 2.69
107 108 7.387948 TCTCTATCCTTGTGCTTTAACTTTGAC 59.612 37.037 0.00 0.00 0.00 3.18
108 109 4.911514 TCCTTGTGCTTTAACTTTGACC 57.088 40.909 0.00 0.00 0.00 4.02
110 111 3.066203 CCTTGTGCTTTAACTTTGACCGT 59.934 43.478 0.00 0.00 0.00 4.83
111 112 4.273969 CCTTGTGCTTTAACTTTGACCGTA 59.726 41.667 0.00 0.00 0.00 4.02
112 113 5.220892 CCTTGTGCTTTAACTTTGACCGTAA 60.221 40.000 0.00 0.00 0.00 3.18
114 115 6.380095 TGTGCTTTAACTTTGACCGTAATT 57.620 33.333 0.00 0.00 0.00 1.40
115 116 6.797454 TGTGCTTTAACTTTGACCGTAATTT 58.203 32.000 0.00 0.00 0.00 1.82
116 117 7.928103 TGTGCTTTAACTTTGACCGTAATTTA 58.072 30.769 0.00 0.00 0.00 1.40
118 119 8.684655 GTGCTTTAACTTTGACCGTAATTTAAC 58.315 33.333 0.00 0.00 0.00 2.01
119 120 8.623030 TGCTTTAACTTTGACCGTAATTTAACT 58.377 29.630 0.00 0.00 0.00 2.24
126 127 9.715121 ACTTTGACCGTAATTTAACTATCAAGA 57.285 29.630 0.00 0.00 0.00 3.02
143 144 8.186821 ACTATCAAGATTAATTGCAGTGAAAGC 58.813 33.333 0.00 0.00 0.00 3.51
144 145 6.330004 TCAAGATTAATTGCAGTGAAAGCA 57.670 33.333 0.00 0.00 40.85 3.91
157 158 8.692110 TGCAGTGAAAGCAAAAATTATATCAG 57.308 30.769 0.00 0.00 39.39 2.90
158 159 8.306038 TGCAGTGAAAGCAAAAATTATATCAGT 58.694 29.630 0.00 0.00 39.39 3.41
160 161 9.844790 CAGTGAAAGCAAAAATTATATCAGTGA 57.155 29.630 0.00 0.00 38.60 3.41
179 180 8.378172 TCAGTGAATTCGTATTTGAAAGAAGT 57.622 30.769 0.04 0.00 0.00 3.01
180 181 8.836413 TCAGTGAATTCGTATTTGAAAGAAGTT 58.164 29.630 0.04 0.00 0.00 2.66
181 182 9.450807 CAGTGAATTCGTATTTGAAAGAAGTTT 57.549 29.630 0.04 0.00 0.00 2.66
214 215 2.961522 TTTTTCCGTCGCAGTTGATC 57.038 45.000 0.00 0.00 0.00 2.92
216 217 1.710013 TTTCCGTCGCAGTTGATCTC 58.290 50.000 0.00 0.00 0.00 2.75
217 218 0.456142 TTCCGTCGCAGTTGATCTCG 60.456 55.000 0.00 0.00 0.00 4.04
220 221 0.363512 CGTCGCAGTTGATCTCGTTG 59.636 55.000 0.00 0.00 0.00 4.10
221 222 0.716108 GTCGCAGTTGATCTCGTTGG 59.284 55.000 0.00 0.00 0.00 3.77
223 224 1.148310 CGCAGTTGATCTCGTTGGTT 58.852 50.000 0.00 0.00 0.00 3.67
224 225 2.029739 TCGCAGTTGATCTCGTTGGTTA 60.030 45.455 0.00 0.00 0.00 2.85
226 227 3.185594 CGCAGTTGATCTCGTTGGTTAAA 59.814 43.478 0.00 0.00 0.00 1.52
230 231 7.302524 GCAGTTGATCTCGTTGGTTAAATTTA 58.697 34.615 0.00 0.00 0.00 1.40
233 234 8.458843 AGTTGATCTCGTTGGTTAAATTTATGG 58.541 33.333 0.00 0.00 0.00 2.74
234 235 7.931578 TGATCTCGTTGGTTAAATTTATGGT 57.068 32.000 0.00 0.00 0.00 3.55
235 236 8.343168 TGATCTCGTTGGTTAAATTTATGGTT 57.657 30.769 0.00 0.00 0.00 3.67
236 237 9.451002 TGATCTCGTTGGTTAAATTTATGGTTA 57.549 29.630 0.00 0.00 0.00 2.85
249 250 8.996024 AAATTTATGGTTAAAATTGGACCTCG 57.004 30.769 0.00 0.00 36.81 4.63
250 251 7.948034 ATTTATGGTTAAAATTGGACCTCGA 57.052 32.000 0.00 0.00 34.52 4.04
251 252 6.995511 TTATGGTTAAAATTGGACCTCGAG 57.004 37.500 5.13 5.13 34.52 4.04
252 253 4.627284 TGGTTAAAATTGGACCTCGAGA 57.373 40.909 15.71 0.00 34.52 4.04
253 254 4.975631 TGGTTAAAATTGGACCTCGAGAA 58.024 39.130 15.71 0.00 34.52 2.87
255 256 5.239963 TGGTTAAAATTGGACCTCGAGAAAC 59.760 40.000 15.71 3.54 34.52 2.78
256 257 5.379827 GTTAAAATTGGACCTCGAGAAACG 58.620 41.667 15.71 0.00 44.09 3.60
257 258 1.439679 AATTGGACCTCGAGAAACGC 58.560 50.000 15.71 0.00 42.26 4.84
258 259 0.736325 ATTGGACCTCGAGAAACGCG 60.736 55.000 15.71 3.53 42.26 6.01
263 264 3.533691 CTCGAGAAACGCGGACGC 61.534 66.667 12.47 6.63 45.53 5.19
264 265 4.331166 TCGAGAAACGCGGACGCA 62.331 61.111 17.35 0.00 45.53 5.24
265 266 3.179265 CGAGAAACGCGGACGCAT 61.179 61.111 17.35 0.00 45.53 4.73
267 268 1.407721 CGAGAAACGCGGACGCATTA 61.408 55.000 17.35 0.00 45.53 1.90
268 269 0.928229 GAGAAACGCGGACGCATTAT 59.072 50.000 17.35 8.15 45.53 1.28
269 270 2.121786 GAGAAACGCGGACGCATTATA 58.878 47.619 17.35 0.00 45.53 0.98
270 271 2.729882 GAGAAACGCGGACGCATTATAT 59.270 45.455 17.35 0.00 45.53 0.86
271 272 3.128349 AGAAACGCGGACGCATTATATT 58.872 40.909 17.35 1.94 45.53 1.28
272 273 3.558418 AGAAACGCGGACGCATTATATTT 59.442 39.130 17.35 6.63 45.53 1.40
273 274 3.955771 AACGCGGACGCATTATATTTT 57.044 38.095 17.35 0.00 45.53 1.82
274 275 3.247563 ACGCGGACGCATTATATTTTG 57.752 42.857 17.35 0.00 45.53 2.44
276 277 3.310227 ACGCGGACGCATTATATTTTGAA 59.690 39.130 17.35 0.00 45.53 2.69
277 278 4.201832 ACGCGGACGCATTATATTTTGAAA 60.202 37.500 17.35 0.00 45.53 2.69
278 279 4.909305 CGCGGACGCATTATATTTTGAAAT 59.091 37.500 17.35 0.00 42.06 2.17
279 280 5.164292 CGCGGACGCATTATATTTTGAAATG 60.164 40.000 17.35 0.00 42.06 2.32
281 282 6.434596 CGGACGCATTATATTTTGAAATGGA 58.565 36.000 0.00 0.00 32.44 3.41
282 283 6.578545 CGGACGCATTATATTTTGAAATGGAG 59.421 38.462 0.00 0.00 32.44 3.86
283 284 6.863126 GGACGCATTATATTTTGAAATGGAGG 59.137 38.462 0.00 0.00 32.44 4.30
284 285 6.748132 ACGCATTATATTTTGAAATGGAGGG 58.252 36.000 0.00 0.00 32.44 4.30
285 286 6.549364 ACGCATTATATTTTGAAATGGAGGGA 59.451 34.615 0.00 0.00 32.44 4.20
286 287 7.086376 CGCATTATATTTTGAAATGGAGGGAG 58.914 38.462 0.00 0.00 32.44 4.30
303 399 3.130693 AGGGAGTACTACAAACGAGCATC 59.869 47.826 7.57 0.00 0.00 3.91
459 581 3.578688 GAACAGTTAAAATGGCCAGCAG 58.421 45.455 13.05 0.00 0.00 4.24
719 841 2.425592 CCCGTTGCTGTCAGTGGA 59.574 61.111 0.93 0.00 0.00 4.02
862 988 3.785122 AACCCACCACGCCACTTCC 62.785 63.158 0.00 0.00 0.00 3.46
914 1048 7.840910 AGATCAGATCGGATAAGATCAGAGCG 61.841 46.154 23.19 0.00 46.80 5.03
945 1079 2.035442 GCGGTTTCTGCTGGAGACC 61.035 63.158 0.00 0.00 43.43 3.85
2013 2150 3.443052 TGTTGGGATCAAAATCATGCCT 58.557 40.909 0.00 0.00 32.98 4.75
2931 3068 3.653344 TCAGACTTCCATCAACAAGACG 58.347 45.455 0.00 0.00 0.00 4.18
3311 3449 5.275067 TCATTTTGGTTTCTGAAACTGGG 57.725 39.130 26.93 14.06 41.14 4.45
3362 3500 9.586732 TCAGAAAAATAACCCCATAATGATAGG 57.413 33.333 0.00 0.00 0.00 2.57
3368 3506 7.845537 ATAACCCCATAATGATAGGATGGAA 57.154 36.000 1.65 0.00 42.41 3.53
3375 3513 7.000472 CCATAATGATAGGATGGAAAGTGTGT 59.000 38.462 0.00 0.00 42.41 3.72
3377 3515 9.559732 CATAATGATAGGATGGAAAGTGTGTAA 57.440 33.333 0.00 0.00 0.00 2.41
3408 3546 7.669304 TGATGGTTCCTTTCATGTTTGATCTTA 59.331 33.333 0.00 0.00 0.00 2.10
3419 3557 9.844790 TTCATGTTTGATCTTATCATGTTTGTC 57.155 29.630 14.86 0.00 39.39 3.18
3442 3580 9.971922 TGTCATTCAGTATTGATAGTACATGAG 57.028 33.333 0.00 0.00 32.27 2.90
3443 3581 9.416794 GTCATTCAGTATTGATAGTACATGAGG 57.583 37.037 0.00 0.00 32.27 3.86
3460 3598 7.856145 ACATGAGGCAGAGTTATCTTTAAAG 57.144 36.000 9.04 9.04 31.64 1.85
3470 3608 8.778358 CAGAGTTATCTTTAAAGCAGTTCAAGT 58.222 33.333 10.51 1.47 31.64 3.16
3498 3636 3.568093 GCAGTTGCCGTGTTTTCAT 57.432 47.368 0.00 0.00 34.31 2.57
3507 3645 1.544724 CGTGTTTTCATCCCCCATGT 58.455 50.000 0.00 0.00 33.66 3.21
3556 3694 4.921515 TCACTCGTTATTCAGCACAACTAC 59.078 41.667 0.00 0.00 0.00 2.73
3558 3696 2.664568 TCGTTATTCAGCACAACTACGC 59.335 45.455 0.00 0.00 0.00 4.42
3574 3712 5.425196 ACTACGCCTTGGTATTTTCCTTA 57.575 39.130 0.00 0.00 0.00 2.69
3578 3716 5.425630 ACGCCTTGGTATTTTCCTTACTAG 58.574 41.667 0.00 0.00 0.00 2.57
3585 3724 5.965705 TGGTATTTTCCTTACTAGGCACCTA 59.034 40.000 0.00 0.00 41.69 3.08
3607 3746 9.331282 ACCTAAAGAGCTCATATAAACATGAAC 57.669 33.333 17.77 0.00 34.59 3.18
3625 3764 7.555087 ACATGAACATTTTCTTGTTTTCCTCA 58.445 30.769 0.00 0.00 43.94 3.86
3629 3768 9.447157 TGAACATTTTCTTGTTTTCCTCAAATT 57.553 25.926 0.00 0.00 39.85 1.82
3689 3829 8.830580 CAATAATAGCTCTGCTAACTTTGCTTA 58.169 33.333 3.31 0.00 44.62 3.09
3710 3850 6.073331 GCTTAGCTGGCTACTATCAGATTTTG 60.073 42.308 0.00 0.00 31.67 2.44
3724 3864 9.403110 CTATCAGATTTTGTCAAAAAGGAACAG 57.597 33.333 14.47 9.72 38.62 3.16
3767 3907 4.553330 AAACATGTGTAGGTGGAGTAGG 57.447 45.455 0.00 0.00 0.00 3.18
3773 3913 3.052109 TGTGTAGGTGGAGTAGGGATGAT 60.052 47.826 0.00 0.00 0.00 2.45
3788 3928 1.806542 GATGATGAGTGGCAAACGTGT 59.193 47.619 0.00 0.00 0.00 4.49
3848 3988 7.302350 TGAACCAGTGATGAATTTGTATACG 57.698 36.000 0.00 0.00 0.00 3.06
3877 4017 6.156775 TCAACTGATGGATCCTACATTGAGAA 59.843 38.462 14.23 0.00 0.00 2.87
3971 4111 2.934364 GCTTGATCACCTGGAGAGTGTG 60.934 54.545 0.00 0.00 36.58 3.82
3974 4114 2.103373 GATCACCTGGAGAGTGTGCTA 58.897 52.381 0.00 0.00 36.58 3.49
3980 4120 2.072298 CTGGAGAGTGTGCTAGCAAAC 58.928 52.381 27.67 27.67 34.50 2.93
3986 4126 0.110823 GTGTGCTAGCAAACGAACCG 60.111 55.000 21.94 0.00 0.00 4.44
3995 4135 1.578583 CAAACGAACCGGTCTCTGTT 58.421 50.000 8.04 7.76 0.00 3.16
4106 4248 4.083110 CCATTTAGCTGACAAGTTCACCTG 60.083 45.833 0.00 0.00 0.00 4.00
4177 4319 9.479549 AATAAACATTCTCAGTGGTTTCCATAT 57.520 29.630 0.00 0.00 35.28 1.78
4178 4320 7.396540 AAACATTCTCAGTGGTTTCCATATC 57.603 36.000 0.00 0.00 35.28 1.63
4193 4335 9.102453 GGTTTCCATATCTTAGTCCCTACTAAT 57.898 37.037 0.00 0.00 45.03 1.73
4218 4360 3.097877 GCCAGTAGCTTTTGTTTTGCT 57.902 42.857 0.00 0.00 40.43 3.91
4219 4361 2.796593 GCCAGTAGCTTTTGTTTTGCTG 59.203 45.455 0.00 0.00 37.62 4.41
4229 4371 5.343325 GCTTTTGTTTTGCTGCAGTAGATAC 59.657 40.000 16.64 10.33 0.00 2.24
4237 4379 5.400066 TGCTGCAGTAGATACACTGTTTA 57.600 39.130 16.64 0.00 46.31 2.01
4244 4386 8.503196 TGCAGTAGATACACTGTTTATTTTGTG 58.497 33.333 5.26 0.00 46.31 3.33
4271 4413 5.239351 TGTATGCAATTACGTTAGGTGTGT 58.761 37.500 0.00 0.00 0.00 3.72
4272 4414 5.701750 TGTATGCAATTACGTTAGGTGTGTT 59.298 36.000 0.00 0.00 0.00 3.32
4273 4415 4.475763 TGCAATTACGTTAGGTGTGTTG 57.524 40.909 0.00 0.00 0.00 3.33
4274 4416 3.878103 TGCAATTACGTTAGGTGTGTTGT 59.122 39.130 0.00 0.00 0.00 3.32
4275 4417 4.215965 GCAATTACGTTAGGTGTGTTGTG 58.784 43.478 0.00 0.00 0.00 3.33
4276 4418 4.260866 GCAATTACGTTAGGTGTGTTGTGT 60.261 41.667 0.00 0.00 0.00 3.72
4299 4441 8.408601 GTGTGTTCTGCTCATTGGAAAATATAT 58.591 33.333 0.00 0.00 0.00 0.86
4307 4449 8.525316 TGCTCATTGGAAAATATATTAGGCATG 58.475 33.333 0.00 0.00 0.00 4.06
4335 4477 5.437060 AGTTGTGTTTAGCTTTCCTCTTGA 58.563 37.500 0.00 0.00 0.00 3.02
4338 4480 6.959639 TGTGTTTAGCTTTCCTCTTGATTT 57.040 33.333 0.00 0.00 0.00 2.17
4361 4503 6.121776 TGGAAAGACCTTATAAGTGCTGAA 57.878 37.500 11.50 0.00 39.86 3.02
4366 4508 4.777896 AGACCTTATAAGTGCTGAAGACCA 59.222 41.667 11.50 0.00 0.00 4.02
4421 4563 4.925068 TCTGAAAGCAGCTTTTGAAGAAC 58.075 39.130 21.49 7.60 42.01 3.01
4509 4651 3.016031 AGCAAACAGTGTCATGTCACAA 58.984 40.909 22.25 0.00 40.37 3.33
4510 4652 3.108144 GCAAACAGTGTCATGTCACAAC 58.892 45.455 22.25 0.34 40.37 3.32
4589 4731 7.335924 TCTGCAAGTGTGTTAGTTCTTTTAGTT 59.664 33.333 0.00 0.00 33.76 2.24
4620 4762 4.083802 GCTGAAGTAATGGTCACACAAGTC 60.084 45.833 0.00 0.00 0.00 3.01
4621 4763 5.029807 TGAAGTAATGGTCACACAAGTCA 57.970 39.130 0.00 0.00 0.00 3.41
4638 4780 3.290710 AGTCAACATCACTTGCACCTTT 58.709 40.909 0.00 0.00 0.00 3.11
4639 4781 3.067180 AGTCAACATCACTTGCACCTTTG 59.933 43.478 0.00 0.00 0.00 2.77
4640 4782 3.023119 TCAACATCACTTGCACCTTTGT 58.977 40.909 0.00 0.00 0.00 2.83
4658 4800 5.929415 CCTTTGTGTTTAGTTTGTTGGTGTT 59.071 36.000 0.00 0.00 0.00 3.32
4752 4894 6.575244 TCTTTATGCTAATTCTCCAGGGAA 57.425 37.500 0.00 0.00 0.00 3.97
4778 4920 4.944317 AGCAAGGGAGTAATAGCTGAAAAC 59.056 41.667 0.00 0.00 0.00 2.43
4808 4950 9.610705 CTGATATCAATGAAAGAGAGAGGAAAA 57.389 33.333 6.90 0.00 0.00 2.29
4878 5020 2.455032 TGTTTGAAAACATTGCGGACG 58.545 42.857 4.52 0.00 43.45 4.79
4928 5070 1.149987 CACCATTGTTTGCATGCACC 58.850 50.000 22.58 14.72 0.00 5.01
5031 5173 3.007398 GGCTACAGATCCTGAACCTATGG 59.993 52.174 0.45 0.00 35.18 2.74
5035 5177 2.702478 CAGATCCTGAACCTATGGCTGA 59.298 50.000 0.00 0.00 32.44 4.26
5109 5251 3.325135 ACAAAGTCAGTCAAGGGGTAGAG 59.675 47.826 0.00 0.00 0.00 2.43
5169 5311 4.214758 TGCAGATTATGGCGATTGATTCAG 59.785 41.667 0.00 0.00 0.00 3.02
5218 5361 8.112016 TGACGGATAAGAAGATGGATACTAAG 57.888 38.462 0.00 0.00 37.61 2.18
5245 5388 0.828022 TAACACCAGGGCCTACGATG 59.172 55.000 5.28 4.76 0.00 3.84
5274 5417 3.821881 GCAGAAGCATGCTCGATTC 57.178 52.632 22.93 14.94 43.07 2.52
5288 5431 1.821332 GATTCTCCAGCCGGGCAAG 60.821 63.158 23.09 15.07 36.21 4.01
5289 5432 4.722700 TTCTCCAGCCGGGCAAGC 62.723 66.667 23.09 0.00 36.21 4.01
5313 5456 5.106987 CCATTACCATCTTTTGCTGCAAAAC 60.107 40.000 30.53 0.00 38.24 2.43
5523 5668 6.133392 CGTGTTATCCTGTGTAAACAAGTTG 58.867 40.000 0.00 0.00 33.92 3.16
5657 5803 4.516652 AGCTTGCTCCATAATTTCTCCT 57.483 40.909 0.00 0.00 0.00 3.69
5658 5804 4.459330 AGCTTGCTCCATAATTTCTCCTC 58.541 43.478 0.00 0.00 0.00 3.71
5660 5806 4.688321 GCTTGCTCCATAATTTCTCCTCCT 60.688 45.833 0.00 0.00 0.00 3.69
5661 5807 4.696479 TGCTCCATAATTTCTCCTCCTC 57.304 45.455 0.00 0.00 0.00 3.71
5733 5880 4.966787 ACGGTGGCACGGGCAAAT 62.967 61.111 26.02 4.92 43.71 2.32
5754 5901 2.200792 TGCAAACGTGTTGTTGATGG 57.799 45.000 1.93 0.00 40.84 3.51
5764 5911 2.168106 TGTTGTTGATGGTTTGCTTGCT 59.832 40.909 0.00 0.00 0.00 3.91
5772 5919 7.093814 TGTTGATGGTTTGCTTGCTTATCTATT 60.094 33.333 0.00 0.00 0.00 1.73
5822 5969 2.152016 GGACACTTTGCTTGGAGTACC 58.848 52.381 0.00 0.00 0.00 3.34
5845 5992 3.751698 GGCGAATTTGTTCCTTCAGTACT 59.248 43.478 0.00 0.00 0.00 2.73
5846 5993 4.933400 GGCGAATTTGTTCCTTCAGTACTA 59.067 41.667 0.00 0.00 0.00 1.82
5847 5994 5.163884 GGCGAATTTGTTCCTTCAGTACTAC 60.164 44.000 0.00 0.00 0.00 2.73
5848 5995 5.638234 GCGAATTTGTTCCTTCAGTACTACT 59.362 40.000 0.00 0.00 0.00 2.57
5849 5996 6.147328 GCGAATTTGTTCCTTCAGTACTACTT 59.853 38.462 0.00 0.00 0.00 2.24
5850 5997 7.621633 GCGAATTTGTTCCTTCAGTACTACTTC 60.622 40.741 0.00 0.00 0.00 3.01
5851 5998 7.148623 CGAATTTGTTCCTTCAGTACTACTTCC 60.149 40.741 0.00 0.00 0.00 3.46
5852 5999 6.742559 TTTGTTCCTTCAGTACTACTTCCT 57.257 37.500 0.00 0.00 0.00 3.36
5853 6000 6.742559 TTGTTCCTTCAGTACTACTTCCTT 57.257 37.500 0.00 0.00 0.00 3.36
5854 6001 6.342338 TGTTCCTTCAGTACTACTTCCTTC 57.658 41.667 0.00 0.00 0.00 3.46
5855 6002 5.048224 TGTTCCTTCAGTACTACTTCCTTCG 60.048 44.000 0.00 0.00 0.00 3.79
5856 6003 4.660168 TCCTTCAGTACTACTTCCTTCGT 58.340 43.478 0.00 0.00 0.00 3.85
5857 6004 4.699257 TCCTTCAGTACTACTTCCTTCGTC 59.301 45.833 0.00 0.00 0.00 4.20
5858 6005 4.142425 CCTTCAGTACTACTTCCTTCGTCC 60.142 50.000 0.00 0.00 0.00 4.79
5859 6006 3.350833 TCAGTACTACTTCCTTCGTCCC 58.649 50.000 0.00 0.00 0.00 4.46
5860 6007 3.009916 TCAGTACTACTTCCTTCGTCCCT 59.990 47.826 0.00 0.00 0.00 4.20
5861 6008 4.225942 TCAGTACTACTTCCTTCGTCCCTA 59.774 45.833 0.00 0.00 0.00 3.53
5862 6009 4.946157 CAGTACTACTTCCTTCGTCCCTAA 59.054 45.833 0.00 0.00 0.00 2.69
5863 6010 5.416952 CAGTACTACTTCCTTCGTCCCTAAA 59.583 44.000 0.00 0.00 0.00 1.85
5864 6011 6.096564 CAGTACTACTTCCTTCGTCCCTAAAT 59.903 42.308 0.00 0.00 0.00 1.40
5865 6012 7.284034 CAGTACTACTTCCTTCGTCCCTAAATA 59.716 40.741 0.00 0.00 0.00 1.40
5866 6013 8.003629 AGTACTACTTCCTTCGTCCCTAAATAT 58.996 37.037 0.00 0.00 0.00 1.28
5867 6014 9.289782 GTACTACTTCCTTCGTCCCTAAATATA 57.710 37.037 0.00 0.00 0.00 0.86
5868 6015 8.773033 ACTACTTCCTTCGTCCCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
5869 6016 8.858094 ACTACTTCCTTCGTCCCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
5870 6017 7.672122 ACTTCCTTCGTCCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
5871 6018 7.724287 ACTTCCTTCGTCCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
5872 6019 7.564292 ACTTCCTTCGTCCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
5873 6020 7.909485 TCCTTCGTCCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
5874 6021 8.315220 TCCTTCGTCCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
5875 6022 8.202137 TCCTTCGTCCCTAAATATAAGTCTTTG 58.798 37.037 0.00 0.00 0.00 2.77
5876 6023 7.041984 CCTTCGTCCCTAAATATAAGTCTTTGC 60.042 40.741 0.00 0.00 0.00 3.68
5877 6024 6.880484 TCGTCCCTAAATATAAGTCTTTGCA 58.120 36.000 0.00 0.00 0.00 4.08
5878 6025 6.984474 TCGTCCCTAAATATAAGTCTTTGCAG 59.016 38.462 0.00 0.00 0.00 4.41
5879 6026 6.984474 CGTCCCTAAATATAAGTCTTTGCAGA 59.016 38.462 0.00 0.00 0.00 4.26
5880 6027 7.169982 CGTCCCTAAATATAAGTCTTTGCAGAG 59.830 40.741 0.00 0.00 0.00 3.35
5881 6028 8.204836 GTCCCTAAATATAAGTCTTTGCAGAGA 58.795 37.037 2.15 2.15 0.00 3.10
5882 6029 8.938883 TCCCTAAATATAAGTCTTTGCAGAGAT 58.061 33.333 10.53 0.00 0.00 2.75
5883 6030 9.566432 CCCTAAATATAAGTCTTTGCAGAGATT 57.434 33.333 10.53 3.04 0.00 2.40
5891 6038 9.979578 ATAAGTCTTTGCAGAGATTCTAGTATG 57.020 33.333 10.53 0.00 0.00 2.39
5892 6039 7.652524 AGTCTTTGCAGAGATTCTAGTATGA 57.347 36.000 10.53 0.00 0.00 2.15
5893 6040 8.072321 AGTCTTTGCAGAGATTCTAGTATGAA 57.928 34.615 10.53 0.00 0.00 2.57
5894 6041 7.978975 AGTCTTTGCAGAGATTCTAGTATGAAC 59.021 37.037 10.53 0.00 0.00 3.18
5895 6042 7.223777 GTCTTTGCAGAGATTCTAGTATGAACC 59.776 40.741 10.53 0.00 0.00 3.62
5896 6043 6.544928 TTGCAGAGATTCTAGTATGAACCA 57.455 37.500 0.00 0.00 0.00 3.67
5897 6044 5.907207 TGCAGAGATTCTAGTATGAACCAC 58.093 41.667 0.00 0.00 0.00 4.16
5898 6045 5.422012 TGCAGAGATTCTAGTATGAACCACA 59.578 40.000 0.00 0.00 0.00 4.17
5899 6046 6.098838 TGCAGAGATTCTAGTATGAACCACAT 59.901 38.462 0.00 0.00 42.39 3.21
5900 6047 7.287696 TGCAGAGATTCTAGTATGAACCACATA 59.712 37.037 0.00 0.00 40.07 2.29
5901 6048 8.144478 GCAGAGATTCTAGTATGAACCACATAA 58.856 37.037 0.00 0.00 42.19 1.90
5902 6049 9.689976 CAGAGATTCTAGTATGAACCACATAAG 57.310 37.037 0.00 0.00 42.19 1.73
5903 6050 8.865090 AGAGATTCTAGTATGAACCACATAAGG 58.135 37.037 0.00 0.00 42.19 2.69
5904 6051 8.783660 AGATTCTAGTATGAACCACATAAGGA 57.216 34.615 0.00 0.00 42.19 3.36
5905 6052 9.386122 AGATTCTAGTATGAACCACATAAGGAT 57.614 33.333 0.00 0.00 42.19 3.24
5906 6053 9.429359 GATTCTAGTATGAACCACATAAGGATG 57.571 37.037 0.00 0.00 42.19 3.51
5908 6055 9.429109 TTCTAGTATGAACCACATAAGGATGTA 57.571 33.333 0.00 0.00 44.82 2.29
5909 6056 9.601810 TCTAGTATGAACCACATAAGGATGTAT 57.398 33.333 0.00 0.00 44.82 2.29
5917 6064 9.319143 GAACCACATAAGGATGTATATAGATGC 57.681 37.037 3.47 3.47 44.82 3.91
5918 6065 8.379428 ACCACATAAGGATGTATATAGATGCA 57.621 34.615 12.88 0.00 44.82 3.96
5919 6066 8.996655 ACCACATAAGGATGTATATAGATGCAT 58.003 33.333 12.88 0.00 44.82 3.96
5920 6067 9.842775 CCACATAAGGATGTATATAGATGCATT 57.157 33.333 12.88 7.42 44.82 3.56
5948 6095 8.752766 AAGTGTAGATTCATTCATTTTGCTTG 57.247 30.769 0.00 0.00 0.00 4.01
5949 6096 7.318141 AGTGTAGATTCATTCATTTTGCTTGG 58.682 34.615 0.00 0.00 0.00 3.61
5950 6097 7.177216 AGTGTAGATTCATTCATTTTGCTTGGA 59.823 33.333 0.00 0.00 0.00 3.53
5951 6098 7.814107 GTGTAGATTCATTCATTTTGCTTGGAA 59.186 33.333 0.00 0.00 0.00 3.53
5952 6099 8.533657 TGTAGATTCATTCATTTTGCTTGGAAT 58.466 29.630 0.00 0.00 0.00 3.01
5959 6106 8.632679 TCATTCATTTTGCTTGGAATATAGTCC 58.367 33.333 12.38 12.38 38.27 3.85
5960 6107 7.953005 TTCATTTTGCTTGGAATATAGTCCA 57.047 32.000 17.76 17.76 46.24 4.02
5978 6125 6.851222 AGTCCATTTAGTGAAATATCTGCG 57.149 37.500 0.00 0.00 33.33 5.18
5979 6126 6.582636 AGTCCATTTAGTGAAATATCTGCGA 58.417 36.000 0.00 0.00 33.33 5.10
5980 6127 7.047891 AGTCCATTTAGTGAAATATCTGCGAA 58.952 34.615 0.00 0.00 33.33 4.70
5981 6128 7.552687 AGTCCATTTAGTGAAATATCTGCGAAA 59.447 33.333 0.00 0.00 33.33 3.46
5982 6129 8.181573 GTCCATTTAGTGAAATATCTGCGAAAA 58.818 33.333 0.00 0.00 33.33 2.29
5983 6130 8.181573 TCCATTTAGTGAAATATCTGCGAAAAC 58.818 33.333 0.00 0.00 33.33 2.43
5984 6131 8.184192 CCATTTAGTGAAATATCTGCGAAAACT 58.816 33.333 0.00 0.00 33.33 2.66
5985 6132 9.559958 CATTTAGTGAAATATCTGCGAAAACTT 57.440 29.630 0.00 0.00 33.33 2.66
6002 6149 9.704098 GCGAAAACTTATATTTAAGAACAGAGG 57.296 33.333 9.58 0.00 38.56 3.69
6037 6184 1.461127 GCTTCATCAGTTCGTGGTGTC 59.539 52.381 0.00 0.00 38.57 3.67
6081 6228 6.534475 ACGGATAGGTACAAAGTATGAACA 57.466 37.500 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.309805 GGAGTAAAACCTGTGGCTCATAAAAAT 60.310 37.037 0.00 0.00 0.00 1.82
1 2 6.015772 GGAGTAAAACCTGTGGCTCATAAAAA 60.016 38.462 0.00 0.00 0.00 1.94
2 3 5.475564 GGAGTAAAACCTGTGGCTCATAAAA 59.524 40.000 0.00 0.00 0.00 1.52
3 4 5.007682 GGAGTAAAACCTGTGGCTCATAAA 58.992 41.667 0.00 0.00 0.00 1.40
4 5 4.566907 GGGAGTAAAACCTGTGGCTCATAA 60.567 45.833 0.00 0.00 0.00 1.90
5 6 3.054655 GGGAGTAAAACCTGTGGCTCATA 60.055 47.826 0.00 0.00 0.00 2.15
6 7 2.290960 GGGAGTAAAACCTGTGGCTCAT 60.291 50.000 0.00 0.00 0.00 2.90
10 11 3.054655 TGATAGGGAGTAAAACCTGTGGC 60.055 47.826 0.00 0.00 37.72 5.01
18 19 6.839657 TGGTTTTTGGTTGATAGGGAGTAAAA 59.160 34.615 0.00 0.00 0.00 1.52
24 25 4.141135 TCTGTGGTTTTTGGTTGATAGGGA 60.141 41.667 0.00 0.00 0.00 4.20
25 26 4.148838 TCTGTGGTTTTTGGTTGATAGGG 58.851 43.478 0.00 0.00 0.00 3.53
26 27 5.982890 ATCTGTGGTTTTTGGTTGATAGG 57.017 39.130 0.00 0.00 0.00 2.57
27 28 7.209475 ACAAATCTGTGGTTTTTGGTTGATAG 58.791 34.615 0.00 0.00 35.23 2.08
28 29 7.118496 ACAAATCTGTGGTTTTTGGTTGATA 57.882 32.000 0.00 0.00 35.23 2.15
29 30 5.988287 ACAAATCTGTGGTTTTTGGTTGAT 58.012 33.333 0.00 0.00 35.23 2.57
30 31 5.413309 ACAAATCTGTGGTTTTTGGTTGA 57.587 34.783 0.00 0.00 35.23 3.18
31 32 6.238076 GCTAACAAATCTGTGGTTTTTGGTTG 60.238 38.462 0.00 0.00 35.37 3.77
64 65 9.815306 AGGATAGAGAAAGCACTACAATATAGA 57.185 33.333 0.00 0.00 0.00 1.98
68 69 7.981789 CACAAGGATAGAGAAAGCACTACAATA 59.018 37.037 0.00 0.00 0.00 1.90
70 71 6.166279 CACAAGGATAGAGAAAGCACTACAA 58.834 40.000 0.00 0.00 0.00 2.41
71 72 5.724328 CACAAGGATAGAGAAAGCACTACA 58.276 41.667 0.00 0.00 0.00 2.74
72 73 4.568760 GCACAAGGATAGAGAAAGCACTAC 59.431 45.833 0.00 0.00 0.00 2.73
74 75 3.262915 AGCACAAGGATAGAGAAAGCACT 59.737 43.478 0.00 0.00 0.00 4.40
75 76 3.604582 AGCACAAGGATAGAGAAAGCAC 58.395 45.455 0.00 0.00 0.00 4.40
77 78 6.372937 AGTTAAAGCACAAGGATAGAGAAAGC 59.627 38.462 0.00 0.00 0.00 3.51
78 79 7.913674 AGTTAAAGCACAAGGATAGAGAAAG 57.086 36.000 0.00 0.00 0.00 2.62
79 80 8.567948 CAAAGTTAAAGCACAAGGATAGAGAAA 58.432 33.333 0.00 0.00 0.00 2.52
80 81 7.936847 TCAAAGTTAAAGCACAAGGATAGAGAA 59.063 33.333 0.00 0.00 0.00 2.87
81 82 7.387948 GTCAAAGTTAAAGCACAAGGATAGAGA 59.612 37.037 0.00 0.00 0.00 3.10
83 84 6.430000 GGTCAAAGTTAAAGCACAAGGATAGA 59.570 38.462 0.00 0.00 0.00 1.98
84 85 6.612306 GGTCAAAGTTAAAGCACAAGGATAG 58.388 40.000 0.00 0.00 0.00 2.08
85 86 5.180492 CGGTCAAAGTTAAAGCACAAGGATA 59.820 40.000 0.00 0.00 0.00 2.59
86 87 4.023193 CGGTCAAAGTTAAAGCACAAGGAT 60.023 41.667 0.00 0.00 0.00 3.24
87 88 3.314080 CGGTCAAAGTTAAAGCACAAGGA 59.686 43.478 0.00 0.00 0.00 3.36
89 90 4.287238 ACGGTCAAAGTTAAAGCACAAG 57.713 40.909 0.00 0.00 0.00 3.16
90 91 5.814764 TTACGGTCAAAGTTAAAGCACAA 57.185 34.783 0.00 0.00 0.00 3.33
93 94 8.623030 AGTTAAATTACGGTCAAAGTTAAAGCA 58.377 29.630 0.00 0.00 30.82 3.91
100 101 9.715121 TCTTGATAGTTAAATTACGGTCAAAGT 57.285 29.630 0.00 0.00 31.13 2.66
118 119 8.186163 TGCTTTCACTGCAATTAATCTTGATAG 58.814 33.333 0.00 0.00 37.51 2.08
119 120 8.054152 TGCTTTCACTGCAATTAATCTTGATA 57.946 30.769 0.00 0.00 37.51 2.15
120 121 6.927416 TGCTTTCACTGCAATTAATCTTGAT 58.073 32.000 0.00 0.00 37.51 2.57
121 122 6.330004 TGCTTTCACTGCAATTAATCTTGA 57.670 33.333 0.00 0.00 37.51 3.02
131 132 9.142515 CTGATATAATTTTTGCTTTCACTGCAA 57.857 29.630 0.00 0.00 46.90 4.08
132 133 8.306038 ACTGATATAATTTTTGCTTTCACTGCA 58.694 29.630 0.00 0.00 38.80 4.41
133 134 8.589629 CACTGATATAATTTTTGCTTTCACTGC 58.410 33.333 0.00 0.00 0.00 4.40
134 135 9.844790 TCACTGATATAATTTTTGCTTTCACTG 57.155 29.630 0.00 0.00 0.00 3.66
195 196 2.478894 GAGATCAACTGCGACGGAAAAA 59.521 45.455 0.00 0.00 0.00 1.94
196 197 2.066262 GAGATCAACTGCGACGGAAAA 58.934 47.619 0.00 0.00 0.00 2.29
198 199 0.456142 CGAGATCAACTGCGACGGAA 60.456 55.000 0.00 0.00 0.00 4.30
199 200 1.136774 CGAGATCAACTGCGACGGA 59.863 57.895 0.00 0.00 0.00 4.69
200 201 0.732880 AACGAGATCAACTGCGACGG 60.733 55.000 0.00 0.00 0.00 4.79
201 202 0.363512 CAACGAGATCAACTGCGACG 59.636 55.000 0.00 0.00 0.00 5.12
203 204 0.317160 ACCAACGAGATCAACTGCGA 59.683 50.000 0.00 0.00 0.00 5.10
204 205 1.148310 AACCAACGAGATCAACTGCG 58.852 50.000 0.00 0.00 0.00 5.18
206 207 9.277565 CATAAATTTAACCAACGAGATCAACTG 57.722 33.333 1.21 0.00 0.00 3.16
207 208 8.458843 CCATAAATTTAACCAACGAGATCAACT 58.541 33.333 1.21 0.00 0.00 3.16
208 209 8.241367 ACCATAAATTTAACCAACGAGATCAAC 58.759 33.333 1.21 0.00 0.00 3.18
224 225 8.808092 TCGAGGTCCAATTTTAACCATAAATTT 58.192 29.630 0.00 0.00 34.01 1.82
226 227 7.832187 TCTCGAGGTCCAATTTTAACCATAAAT 59.168 33.333 13.56 0.00 35.43 1.40
230 231 5.174037 TCTCGAGGTCCAATTTTAACCAT 57.826 39.130 13.56 0.00 35.43 3.55
233 234 5.379827 CGTTTCTCGAGGTCCAATTTTAAC 58.620 41.667 13.56 1.79 42.86 2.01
234 235 4.083696 GCGTTTCTCGAGGTCCAATTTTAA 60.084 41.667 13.56 0.00 42.86 1.52
235 236 3.434299 GCGTTTCTCGAGGTCCAATTTTA 59.566 43.478 13.56 0.00 42.86 1.52
236 237 2.225727 GCGTTTCTCGAGGTCCAATTTT 59.774 45.455 13.56 0.00 42.86 1.82
237 238 1.804748 GCGTTTCTCGAGGTCCAATTT 59.195 47.619 13.56 0.00 42.86 1.82
238 239 1.439679 GCGTTTCTCGAGGTCCAATT 58.560 50.000 13.56 0.00 42.86 2.32
239 240 0.736325 CGCGTTTCTCGAGGTCCAAT 60.736 55.000 13.56 0.00 42.86 3.16
240 241 1.372499 CGCGTTTCTCGAGGTCCAA 60.372 57.895 13.56 0.00 42.86 3.53
241 242 2.257371 CGCGTTTCTCGAGGTCCA 59.743 61.111 13.56 0.00 42.86 4.02
246 247 3.533691 GCGTCCGCGTTTCTCGAG 61.534 66.667 5.93 5.93 42.86 4.04
248 249 1.407721 TAATGCGTCCGCGTTTCTCG 61.408 55.000 22.31 3.34 46.84 4.04
249 250 0.928229 ATAATGCGTCCGCGTTTCTC 59.072 50.000 22.31 0.00 46.84 2.87
250 251 2.212869 TATAATGCGTCCGCGTTTCT 57.787 45.000 22.31 13.50 46.84 2.52
251 252 3.515071 AATATAATGCGTCCGCGTTTC 57.485 42.857 22.31 0.00 46.84 2.78
252 253 3.955771 AAATATAATGCGTCCGCGTTT 57.044 38.095 22.31 13.29 46.84 3.60
255 256 3.513462 TCAAAATATAATGCGTCCGCG 57.487 42.857 7.22 0.00 45.51 6.46
256 257 5.116983 CCATTTCAAAATATAATGCGTCCGC 59.883 40.000 4.42 4.42 42.35 5.54
257 258 6.434596 TCCATTTCAAAATATAATGCGTCCG 58.565 36.000 0.00 0.00 0.00 4.79
258 259 6.863126 CCTCCATTTCAAAATATAATGCGTCC 59.137 38.462 0.00 0.00 0.00 4.79
259 260 6.863126 CCCTCCATTTCAAAATATAATGCGTC 59.137 38.462 0.00 0.00 0.00 5.19
260 261 6.549364 TCCCTCCATTTCAAAATATAATGCGT 59.451 34.615 0.00 0.00 0.00 5.24
261 262 6.980593 TCCCTCCATTTCAAAATATAATGCG 58.019 36.000 0.00 0.00 0.00 4.73
262 263 7.955918 ACTCCCTCCATTTCAAAATATAATGC 58.044 34.615 0.00 0.00 0.00 3.56
267 268 8.778059 TGTAGTACTCCCTCCATTTCAAAATAT 58.222 33.333 0.00 0.00 0.00 1.28
268 269 8.153221 TGTAGTACTCCCTCCATTTCAAAATA 57.847 34.615 0.00 0.00 0.00 1.40
269 270 7.027874 TGTAGTACTCCCTCCATTTCAAAAT 57.972 36.000 0.00 0.00 0.00 1.82
270 271 6.442541 TGTAGTACTCCCTCCATTTCAAAA 57.557 37.500 0.00 0.00 0.00 2.44
271 272 6.442541 TTGTAGTACTCCCTCCATTTCAAA 57.557 37.500 0.00 0.00 0.00 2.69
272 273 6.235664 GTTTGTAGTACTCCCTCCATTTCAA 58.764 40.000 0.00 0.00 0.00 2.69
273 274 5.568023 CGTTTGTAGTACTCCCTCCATTTCA 60.568 44.000 0.00 0.00 0.00 2.69
274 275 4.868734 CGTTTGTAGTACTCCCTCCATTTC 59.131 45.833 0.00 0.00 0.00 2.17
276 277 4.091549 TCGTTTGTAGTACTCCCTCCATT 58.908 43.478 0.00 0.00 0.00 3.16
277 278 3.700038 CTCGTTTGTAGTACTCCCTCCAT 59.300 47.826 0.00 0.00 0.00 3.41
278 279 3.087031 CTCGTTTGTAGTACTCCCTCCA 58.913 50.000 0.00 0.00 0.00 3.86
279 280 2.159268 GCTCGTTTGTAGTACTCCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
281 282 2.522185 TGCTCGTTTGTAGTACTCCCT 58.478 47.619 0.00 0.00 0.00 4.20
282 283 3.445857 GATGCTCGTTTGTAGTACTCCC 58.554 50.000 0.00 0.00 0.00 4.30
283 284 3.119245 TGGATGCTCGTTTGTAGTACTCC 60.119 47.826 0.00 0.00 0.00 3.85
284 285 4.106029 TGGATGCTCGTTTGTAGTACTC 57.894 45.455 0.00 0.00 0.00 2.59
285 286 3.762288 TCTGGATGCTCGTTTGTAGTACT 59.238 43.478 0.00 0.00 0.00 2.73
286 287 4.106029 TCTGGATGCTCGTTTGTAGTAC 57.894 45.455 0.00 0.00 0.00 2.73
289 385 1.929836 GCTCTGGATGCTCGTTTGTAG 59.070 52.381 0.00 0.00 0.00 2.74
387 484 1.203313 GGGCGAGAAAAACGTGTCG 59.797 57.895 0.00 0.00 35.51 4.35
412 509 2.933260 GGCTCATTTCGTCCTCTCTTTC 59.067 50.000 0.00 0.00 0.00 2.62
506 628 2.041922 ATGAGGGCCGCTACAGGA 60.042 61.111 9.19 0.00 0.00 3.86
561 683 4.124126 ACCATCCCTCCCCTCCCC 62.124 72.222 0.00 0.00 0.00 4.81
562 684 2.774351 CACCATCCCTCCCCTCCC 60.774 72.222 0.00 0.00 0.00 4.30
563 685 2.774351 CCACCATCCCTCCCCTCC 60.774 72.222 0.00 0.00 0.00 4.30
564 686 2.774351 CCCACCATCCCTCCCCTC 60.774 72.222 0.00 0.00 0.00 4.30
565 687 4.455137 CCCCACCATCCCTCCCCT 62.455 72.222 0.00 0.00 0.00 4.79
656 778 4.944372 CGTGGACCGCGCCTATCC 62.944 72.222 15.55 7.09 0.00 2.59
719 841 4.988716 TCCCTCGTGGACTGCCGT 62.989 66.667 4.76 0.00 38.61 5.68
766 888 4.255126 CGTATATTCCACGGGGCG 57.745 61.111 0.00 0.00 35.78 6.13
1558 1692 0.827368 GAGGAGGAGGTTGCTGTAGG 59.173 60.000 0.00 0.00 0.00 3.18
2013 2150 5.651612 ACTGATCCATATGAATTCCCACA 57.348 39.130 3.65 0.00 0.00 4.17
2931 3068 2.615869 CTCAGAACTTCTGCACTAGGC 58.384 52.381 13.24 0.00 43.95 3.93
3291 3428 5.366477 ACATCCCAGTTTCAGAAACCAAAAT 59.634 36.000 20.47 8.59 42.34 1.82
3356 3494 6.414732 CCTTTACACACTTTCCATCCTATCA 58.585 40.000 0.00 0.00 0.00 2.15
3360 3498 3.397955 ACCCTTTACACACTTTCCATCCT 59.602 43.478 0.00 0.00 0.00 3.24
3362 3500 4.394729 TCACCCTTTACACACTTTCCATC 58.605 43.478 0.00 0.00 0.00 3.51
3368 3506 3.876309 ACCATCACCCTTTACACACTT 57.124 42.857 0.00 0.00 0.00 3.16
3375 3513 4.733077 TGAAAGGAACCATCACCCTTTA 57.267 40.909 0.00 0.00 46.78 1.85
3377 3515 3.181418 ACATGAAAGGAACCATCACCCTT 60.181 43.478 0.00 0.00 41.70 3.95
3419 3557 7.874528 TGCCTCATGTACTATCAATACTGAATG 59.125 37.037 0.00 0.00 34.49 2.67
3442 3580 6.149474 TGAACTGCTTTAAAGATAACTCTGCC 59.851 38.462 19.48 0.00 0.00 4.85
3443 3581 7.133891 TGAACTGCTTTAAAGATAACTCTGC 57.866 36.000 19.48 1.47 0.00 4.26
3460 3598 2.869897 CCTCGACTCTACTTGAACTGC 58.130 52.381 0.00 0.00 0.00 4.40
3498 3636 6.332635 AGAGATACATATGAAAACATGGGGGA 59.667 38.462 10.38 0.00 0.00 4.81
3556 3694 5.986004 CTAGTAAGGAAAATACCAAGGCG 57.014 43.478 0.00 0.00 0.00 5.52
3574 3712 2.821437 TGAGCTCTTTAGGTGCCTAGT 58.179 47.619 16.19 0.00 35.28 2.57
3578 3716 6.055588 TGTTTATATGAGCTCTTTAGGTGCC 58.944 40.000 16.19 0.00 35.28 5.01
3607 3746 8.212317 ACCAATTTGAGGAAAACAAGAAAATG 57.788 30.769 0.00 0.00 0.00 2.32
3609 3748 7.390027 TGACCAATTTGAGGAAAACAAGAAAA 58.610 30.769 0.00 0.00 0.00 2.29
3613 3752 9.492973 AATTATGACCAATTTGAGGAAAACAAG 57.507 29.630 0.00 0.00 0.00 3.16
3689 3829 5.104776 TGACAAAATCTGATAGTAGCCAGCT 60.105 40.000 0.00 0.00 0.00 4.24
3767 3907 1.131126 CACGTTTGCCACTCATCATCC 59.869 52.381 0.00 0.00 0.00 3.51
3773 3913 3.106552 GCACACGTTTGCCACTCA 58.893 55.556 15.77 0.00 36.42 3.41
3788 3928 3.249189 AAGTCCGAAGCCTGGGCA 61.249 61.111 14.39 0.00 44.88 5.36
3848 3988 5.296151 TGTAGGATCCATCAGTTGATTCC 57.704 43.478 15.82 4.00 31.98 3.01
3877 4017 2.166254 CACACCAAAGCACTTTCCTTGT 59.834 45.455 0.00 0.00 0.00 3.16
3905 4045 2.593978 CCTGGGTCAGCATCCTGG 59.406 66.667 0.00 0.00 39.61 4.45
3929 4069 0.687354 TCTCTTTGGCCTGTGAGGAC 59.313 55.000 3.32 0.00 46.38 3.85
3971 4111 0.669625 AGACCGGTTCGTTTGCTAGC 60.670 55.000 9.42 8.10 0.00 3.42
3974 4114 0.600255 CAGAGACCGGTTCGTTTGCT 60.600 55.000 9.42 0.00 0.00 3.91
3995 4135 6.553953 TCAACAATATACTGGCCACTCTTA 57.446 37.500 0.00 0.00 0.00 2.10
4009 4149 6.306987 ACCTGAGGTTTGACTTCAACAATAT 58.693 36.000 0.00 0.00 33.69 1.28
4158 4300 8.095452 ACTAAGATATGGAAACCACTGAGAAT 57.905 34.615 0.00 0.00 35.80 2.40
4161 4303 6.284459 GGACTAAGATATGGAAACCACTGAG 58.716 44.000 0.00 0.00 35.80 3.35
4167 4309 6.997942 AGTAGGGACTAAGATATGGAAACC 57.002 41.667 0.00 0.00 45.48 3.27
4229 4371 8.022550 TGCATACAGATCACAAAATAAACAGTG 58.977 33.333 0.00 0.00 0.00 3.66
4237 4379 7.761409 ACGTAATTGCATACAGATCACAAAAT 58.239 30.769 0.00 0.00 0.00 1.82
4244 4386 6.479001 ACACCTAACGTAATTGCATACAGATC 59.521 38.462 0.00 0.00 0.00 2.75
4260 4402 2.933906 AGAACACACAACACACCTAACG 59.066 45.455 0.00 0.00 0.00 3.18
4271 4413 2.929641 TCCAATGAGCAGAACACACAA 58.070 42.857 0.00 0.00 0.00 3.33
4272 4414 2.636647 TCCAATGAGCAGAACACACA 57.363 45.000 0.00 0.00 0.00 3.72
4273 4415 3.988379 TTTCCAATGAGCAGAACACAC 57.012 42.857 0.00 0.00 0.00 3.82
4274 4416 6.839124 ATATTTTCCAATGAGCAGAACACA 57.161 33.333 0.00 0.00 0.00 3.72
4299 4441 3.417069 ACACAACTAGCACATGCCTAA 57.583 42.857 0.00 0.00 43.38 2.69
4307 4449 4.515567 AGGAAAGCTAAACACAACTAGCAC 59.484 41.667 4.10 0.00 42.51 4.40
4335 4477 7.175104 TCAGCACTTATAAGGTCTTTCCAAAT 58.825 34.615 16.73 0.00 39.02 2.32
4338 4480 5.755409 TCAGCACTTATAAGGTCTTTCCA 57.245 39.130 16.73 0.00 39.02 3.53
4361 4503 6.838382 ACCACAAGATAAGTTAAACTGGTCT 58.162 36.000 0.00 0.00 0.00 3.85
4366 4508 9.841295 TTCTACAACCACAAGATAAGTTAAACT 57.159 29.630 0.00 0.00 0.00 2.66
4421 4563 3.673173 GCAAAGCAGCCCATATTGG 57.327 52.632 0.00 0.00 37.25 3.16
4509 4651 0.981943 AAGTAGTTAAGGCCCTGCGT 59.018 50.000 0.00 0.00 0.00 5.24
4510 4652 1.066430 TGAAGTAGTTAAGGCCCTGCG 60.066 52.381 0.00 0.00 0.00 5.18
4589 4731 5.874810 GTGACCATTACTTCAGCTCAATGTA 59.125 40.000 0.00 0.00 0.00 2.29
4620 4762 3.117794 CACAAAGGTGCAAGTGATGTTG 58.882 45.455 0.00 0.00 38.37 3.33
4621 4763 3.441496 CACAAAGGTGCAAGTGATGTT 57.559 42.857 0.00 0.00 38.37 2.71
4638 4780 4.082136 GGGAACACCAACAAACTAAACACA 60.082 41.667 0.00 0.00 39.85 3.72
4639 4781 4.426416 GGGAACACCAACAAACTAAACAC 58.574 43.478 0.00 0.00 39.85 3.32
4640 4782 3.447944 GGGGAACACCAACAAACTAAACA 59.552 43.478 0.00 0.00 42.91 2.83
4658 4800 1.005924 GAGGCAATTTTGAGAGGGGGA 59.994 52.381 0.00 0.00 0.00 4.81
4752 4894 6.500589 TTCAGCTATTACTCCCTTGCTTAT 57.499 37.500 0.00 0.00 0.00 1.73
4778 4920 9.642327 CCTCTCTCTTTCATTGATATCAGTATG 57.358 37.037 5.39 8.15 37.54 2.39
4808 4950 2.151202 CACAATACAAAGTCGGCCTGT 58.849 47.619 0.00 0.00 0.00 4.00
4878 5020 4.142026 GGCAACCATACCCCTTTTGATTAC 60.142 45.833 0.00 0.00 0.00 1.89
4928 5070 0.457851 TGCTTGGTTTTTGTCCCACG 59.542 50.000 0.00 0.00 0.00 4.94
5012 5154 3.643320 CAGCCATAGGTTCAGGATCTGTA 59.357 47.826 0.00 0.00 32.61 2.74
5031 5173 0.247736 AACTCATCGGTGGAGTCAGC 59.752 55.000 0.00 0.00 44.50 4.26
5109 5251 4.870426 TCTGAACTACAATCCATCGAAAGC 59.130 41.667 0.00 0.00 0.00 3.51
5169 5311 6.088749 CAGAATATATGTGTAGAAGCGACTGC 59.911 42.308 0.00 0.00 43.24 4.40
5202 5344 6.130569 AGTCGTTCCTTAGTATCCATCTTCT 58.869 40.000 0.00 0.00 0.00 2.85
5218 5361 0.672711 GCCCTGGTGTTAGTCGTTCC 60.673 60.000 0.00 0.00 0.00 3.62
5245 5388 1.800805 TGCTTCTGCACTAGCTTCAC 58.199 50.000 14.46 0.00 45.31 3.18
5288 5431 2.094078 TGCAGCAAAAGATGGTAATGGC 60.094 45.455 0.00 0.00 37.77 4.40
5289 5432 3.872511 TGCAGCAAAAGATGGTAATGG 57.127 42.857 0.00 0.00 37.77 3.16
5313 5456 2.738846 GCTATTGACATATGGACCTGCG 59.261 50.000 7.80 0.00 0.00 5.18
5523 5668 1.268845 ACAAAACCGAAACCGATGTGC 60.269 47.619 0.00 0.00 0.00 4.57
5657 5803 3.559171 GCATACTTGAACCCAACAGAGGA 60.559 47.826 0.00 0.00 0.00 3.71
5658 5804 2.749621 GCATACTTGAACCCAACAGAGG 59.250 50.000 0.00 0.00 0.00 3.69
5660 5806 3.788227 AGCATACTTGAACCCAACAGA 57.212 42.857 0.00 0.00 0.00 3.41
5661 5807 4.074970 AGAAGCATACTTGAACCCAACAG 58.925 43.478 0.00 0.00 35.82 3.16
5733 5880 2.926200 CCATCAACAACACGTTTGCAAA 59.074 40.909 8.05 8.05 34.86 3.68
5754 5901 8.811378 GGAAAATCAATAGATAAGCAAGCAAAC 58.189 33.333 0.00 0.00 33.08 2.93
5772 5919 8.511321 GTTGTGTATCACATGTTAGGAAAATCA 58.489 33.333 0.00 0.00 44.16 2.57
5791 5938 2.680841 GCAAAGTGTCCACAGTTGTGTA 59.319 45.455 11.02 0.00 44.21 2.90
5792 5939 1.472480 GCAAAGTGTCCACAGTTGTGT 59.528 47.619 11.02 0.00 44.21 3.72
5822 5969 1.535462 ACTGAAGGAACAAATTCGCCG 59.465 47.619 0.00 0.00 35.48 6.46
5845 5992 8.773033 ACTTATATTTAGGGACGAAGGAAGTA 57.227 34.615 0.00 0.00 0.00 2.24
5846 5993 7.564292 AGACTTATATTTAGGGACGAAGGAAGT 59.436 37.037 0.00 0.00 0.00 3.01
5847 5994 7.953752 AGACTTATATTTAGGGACGAAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
5848 5995 7.909485 AGACTTATATTTAGGGACGAAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
5849 5996 7.909485 AAGACTTATATTTAGGGACGAAGGA 57.091 36.000 0.00 0.00 0.00 3.36
5850 5997 7.041984 GCAAAGACTTATATTTAGGGACGAAGG 60.042 40.741 0.00 0.00 0.00 3.46
5851 5998 7.494625 TGCAAAGACTTATATTTAGGGACGAAG 59.505 37.037 0.00 0.00 0.00 3.79
5852 5999 7.332557 TGCAAAGACTTATATTTAGGGACGAA 58.667 34.615 0.00 0.00 0.00 3.85
5853 6000 6.880484 TGCAAAGACTTATATTTAGGGACGA 58.120 36.000 0.00 0.00 0.00 4.20
5854 6001 6.984474 TCTGCAAAGACTTATATTTAGGGACG 59.016 38.462 0.00 0.00 0.00 4.79
5855 6002 8.204836 TCTCTGCAAAGACTTATATTTAGGGAC 58.795 37.037 0.00 0.00 0.00 4.46
5856 6003 8.319057 TCTCTGCAAAGACTTATATTTAGGGA 57.681 34.615 0.00 0.00 0.00 4.20
5857 6004 9.566432 AATCTCTGCAAAGACTTATATTTAGGG 57.434 33.333 0.00 0.00 0.00 3.53
5865 6012 9.979578 CATACTAGAATCTCTGCAAAGACTTAT 57.020 33.333 0.00 0.00 0.00 1.73
5866 6013 9.190317 TCATACTAGAATCTCTGCAAAGACTTA 57.810 33.333 0.00 0.00 0.00 2.24
5867 6014 8.072321 TCATACTAGAATCTCTGCAAAGACTT 57.928 34.615 0.00 0.00 0.00 3.01
5868 6015 7.652524 TCATACTAGAATCTCTGCAAAGACT 57.347 36.000 0.00 0.00 0.00 3.24
5869 6016 7.223777 GGTTCATACTAGAATCTCTGCAAAGAC 59.776 40.741 0.00 0.00 0.00 3.01
5870 6017 7.093333 TGGTTCATACTAGAATCTCTGCAAAGA 60.093 37.037 0.00 0.00 29.96 2.52
5871 6018 7.010923 GTGGTTCATACTAGAATCTCTGCAAAG 59.989 40.741 0.00 0.00 29.96 2.77
5872 6019 6.818644 GTGGTTCATACTAGAATCTCTGCAAA 59.181 38.462 0.00 0.00 29.96 3.68
5873 6020 6.070824 TGTGGTTCATACTAGAATCTCTGCAA 60.071 38.462 0.00 0.00 29.96 4.08
5874 6021 5.422012 TGTGGTTCATACTAGAATCTCTGCA 59.578 40.000 0.00 0.00 29.96 4.41
5875 6022 5.907207 TGTGGTTCATACTAGAATCTCTGC 58.093 41.667 0.00 0.00 29.96 4.26
5876 6023 9.689976 CTTATGTGGTTCATACTAGAATCTCTG 57.310 37.037 0.00 0.00 38.55 3.35
5877 6024 8.865090 CCTTATGTGGTTCATACTAGAATCTCT 58.135 37.037 0.00 0.00 38.55 3.10
5878 6025 8.861086 TCCTTATGTGGTTCATACTAGAATCTC 58.139 37.037 0.00 0.00 38.55 2.75
5879 6026 8.783660 TCCTTATGTGGTTCATACTAGAATCT 57.216 34.615 0.00 0.00 38.55 2.40
5880 6027 9.429359 CATCCTTATGTGGTTCATACTAGAATC 57.571 37.037 0.00 0.00 38.55 2.52
5881 6028 8.938883 ACATCCTTATGTGGTTCATACTAGAAT 58.061 33.333 0.00 0.00 44.79 2.40
5882 6029 8.319057 ACATCCTTATGTGGTTCATACTAGAA 57.681 34.615 0.00 0.00 44.79 2.10
5883 6030 7.914427 ACATCCTTATGTGGTTCATACTAGA 57.086 36.000 0.00 0.00 44.79 2.43
5891 6038 9.319143 GCATCTATATACATCCTTATGTGGTTC 57.681 37.037 1.34 0.00 45.99 3.62
5892 6039 8.825774 TGCATCTATATACATCCTTATGTGGTT 58.174 33.333 1.34 0.00 45.99 3.67
5893 6040 8.379428 TGCATCTATATACATCCTTATGTGGT 57.621 34.615 1.34 0.00 45.99 4.16
5894 6041 9.842775 AATGCATCTATATACATCCTTATGTGG 57.157 33.333 0.00 0.00 45.99 4.17
5922 6069 9.844790 CAAGCAAAATGAATGAATCTACACTTA 57.155 29.630 0.00 0.00 0.00 2.24
5923 6070 7.816031 CCAAGCAAAATGAATGAATCTACACTT 59.184 33.333 0.00 0.00 0.00 3.16
5924 6071 7.177216 TCCAAGCAAAATGAATGAATCTACACT 59.823 33.333 0.00 0.00 0.00 3.55
5925 6072 7.315142 TCCAAGCAAAATGAATGAATCTACAC 58.685 34.615 0.00 0.00 0.00 2.90
5926 6073 7.465353 TCCAAGCAAAATGAATGAATCTACA 57.535 32.000 0.00 0.00 0.00 2.74
5927 6074 8.937634 ATTCCAAGCAAAATGAATGAATCTAC 57.062 30.769 0.00 0.00 0.00 2.59
5933 6080 8.632679 GGACTATATTCCAAGCAAAATGAATGA 58.367 33.333 4.29 0.00 35.49 2.57
5934 6081 8.415553 TGGACTATATTCCAAGCAAAATGAATG 58.584 33.333 9.28 0.00 43.04 2.67
5935 6082 8.537728 TGGACTATATTCCAAGCAAAATGAAT 57.462 30.769 9.28 0.00 43.04 2.57
5936 6083 7.953005 TGGACTATATTCCAAGCAAAATGAA 57.047 32.000 9.28 0.00 43.04 2.57
5952 6099 9.639601 CGCAGATATTTCACTAAATGGACTATA 57.360 33.333 0.00 0.00 36.02 1.31
5953 6100 8.367911 TCGCAGATATTTCACTAAATGGACTAT 58.632 33.333 0.00 0.00 36.02 2.12
5954 6101 7.722363 TCGCAGATATTTCACTAAATGGACTA 58.278 34.615 0.00 0.00 36.02 2.59
5955 6102 6.582636 TCGCAGATATTTCACTAAATGGACT 58.417 36.000 0.00 0.00 36.02 3.85
5956 6103 6.844696 TCGCAGATATTTCACTAAATGGAC 57.155 37.500 0.00 0.00 36.02 4.02
5957 6104 7.857734 TTTCGCAGATATTTCACTAAATGGA 57.142 32.000 0.00 0.00 36.02 3.41
5958 6105 8.184192 AGTTTTCGCAGATATTTCACTAAATGG 58.816 33.333 0.00 0.00 36.02 3.16
5959 6106 9.559958 AAGTTTTCGCAGATATTTCACTAAATG 57.440 29.630 0.00 0.00 36.02 2.32
5976 6123 9.704098 CCTCTGTTCTTAAATATAAGTTTTCGC 57.296 33.333 0.00 0.00 39.65 4.70
5988 6135 9.041354 AGAGATGTACTTCCTCTGTTCTTAAAT 57.959 33.333 5.19 0.00 36.07 1.40
5989 6136 8.423906 AGAGATGTACTTCCTCTGTTCTTAAA 57.576 34.615 5.19 0.00 36.07 1.52
5990 6137 8.423906 AAGAGATGTACTTCCTCTGTTCTTAA 57.576 34.615 11.18 0.00 37.35 1.85
5991 6138 8.307483 CAAAGAGATGTACTTCCTCTGTTCTTA 58.693 37.037 11.18 0.00 37.35 2.10
5992 6139 6.926630 AAGAGATGTACTTCCTCTGTTCTT 57.073 37.500 11.18 7.54 37.35 2.52
5993 6140 6.696411 CAAAGAGATGTACTTCCTCTGTTCT 58.304 40.000 11.18 2.81 37.35 3.01
5994 6141 5.350091 GCAAAGAGATGTACTTCCTCTGTTC 59.650 44.000 11.18 0.91 37.35 3.18
5995 6142 5.012561 AGCAAAGAGATGTACTTCCTCTGTT 59.987 40.000 11.18 3.61 37.35 3.16
5996 6143 4.530161 AGCAAAGAGATGTACTTCCTCTGT 59.470 41.667 11.18 5.28 37.35 3.41
5997 6144 5.083533 AGCAAAGAGATGTACTTCCTCTG 57.916 43.478 11.18 5.22 37.35 3.35
5998 6145 5.247110 TGAAGCAAAGAGATGTACTTCCTCT 59.753 40.000 5.19 5.92 38.79 3.69
5999 6146 5.482908 TGAAGCAAAGAGATGTACTTCCTC 58.517 41.667 5.19 3.86 34.10 3.71
6000 6147 5.489792 TGAAGCAAAGAGATGTACTTCCT 57.510 39.130 5.19 0.56 34.10 3.36
6001 6148 5.877012 TGATGAAGCAAAGAGATGTACTTCC 59.123 40.000 5.19 0.00 34.10 3.46
6002 6149 6.593382 ACTGATGAAGCAAAGAGATGTACTTC 59.407 38.462 0.50 0.50 35.28 3.01
6003 6150 6.471146 ACTGATGAAGCAAAGAGATGTACTT 58.529 36.000 0.00 0.00 0.00 2.24
6004 6151 6.047511 ACTGATGAAGCAAAGAGATGTACT 57.952 37.500 0.00 0.00 0.00 2.73
6005 6152 6.454848 CGAACTGATGAAGCAAAGAGATGTAC 60.455 42.308 0.00 0.00 0.00 2.90
6006 6153 5.578336 CGAACTGATGAAGCAAAGAGATGTA 59.422 40.000 0.00 0.00 0.00 2.29
6037 6184 3.595709 TGTTCAGCCGTTTTCTAAACG 57.404 42.857 15.55 15.55 42.74 3.60
6081 6228 6.861065 AACATCATCTGTTTTACGTTGTCT 57.139 33.333 0.00 0.00 45.98 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.