Multiple sequence alignment - TraesCS3A01G288300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G288300 chr3A 100.000 4082 0 0 1 4082 516635290 516631209 0.000000e+00 7539.0
1 TraesCS3A01G288300 chr3A 91.837 49 4 0 4019 4067 215068575 215068623 7.320000e-08 69.4
2 TraesCS3A01G288300 chr3D 87.011 2225 131 66 35 2178 397160791 397158644 0.000000e+00 2362.0
3 TraesCS3A01G288300 chr3D 90.566 583 35 10 2753 3327 397158352 397157782 0.000000e+00 754.0
4 TraesCS3A01G288300 chr3D 88.889 243 6 9 2310 2539 397158581 397158347 3.110000e-71 279.0
5 TraesCS3A01G288300 chr3B 87.656 2090 106 63 27 2056 522779237 522777240 0.000000e+00 2290.0
6 TraesCS3A01G288300 chr3B 90.844 557 50 1 3325 3881 824305053 824304498 0.000000e+00 745.0
7 TraesCS3A01G288300 chr3B 88.408 578 45 12 2758 3327 522776836 522776273 0.000000e+00 676.0
8 TraesCS3A01G288300 chr3B 84.173 417 28 16 2137 2539 522777225 522776833 1.790000e-98 370.0
9 TraesCS3A01G288300 chr3B 95.434 219 9 1 2534 2751 49950064 49949846 8.400000e-92 348.0
10 TraesCS3A01G288300 chr3B 94.570 221 11 1 2532 2751 795441344 795441124 1.410000e-89 340.0
11 TraesCS3A01G288300 chr3B 94.545 220 11 1 2534 2752 523158161 523158380 5.050000e-89 339.0
12 TraesCS3A01G288300 chr3B 93.694 222 13 1 2534 2754 235884226 235884005 8.460000e-87 331.0
13 TraesCS3A01G288300 chr3B 97.674 43 1 0 4025 4067 810173582 810173540 1.570000e-09 75.0
14 TraesCS3A01G288300 chr6B 91.150 565 47 3 3318 3881 26217733 26218295 0.000000e+00 763.0
15 TraesCS3A01G288300 chr6B 90.681 558 51 1 3324 3881 599981102 599981658 0.000000e+00 741.0
16 TraesCS3A01G288300 chr2B 90.941 563 49 2 3319 3881 452910172 452910732 0.000000e+00 756.0
17 TraesCS3A01G288300 chr2B 90.844 557 50 1 3325 3881 175454603 175454048 0.000000e+00 745.0
18 TraesCS3A01G288300 chr2B 95.000 40 2 0 4028 4067 518449923 518449962 3.410000e-06 63.9
19 TraesCS3A01G288300 chr7B 90.877 559 48 2 3325 3881 739379294 739379851 0.000000e+00 747.0
20 TraesCS3A01G288300 chr7B 90.664 557 50 2 3325 3881 498599769 498599215 0.000000e+00 739.0
21 TraesCS3A01G288300 chr7B 89.685 572 55 4 3312 3882 657535546 657536114 0.000000e+00 726.0
22 TraesCS3A01G288300 chr1B 90.844 557 50 1 3325 3881 589132453 589133008 0.000000e+00 745.0
23 TraesCS3A01G288300 chr1B 95.475 221 8 2 2533 2752 652781463 652781682 6.490000e-93 351.0
24 TraesCS3A01G288300 chr1B 95.122 82 4 0 1302 1383 600885828 600885747 3.310000e-26 130.0
25 TraesCS3A01G288300 chr2A 95.062 405 19 1 2923 3327 186284184 186284587 1.600000e-178 636.0
26 TraesCS3A01G288300 chr2A 93.750 224 13 1 2534 2756 777253139 777252916 6.540000e-88 335.0
27 TraesCS3A01G288300 chr5B 95.455 220 9 1 2531 2749 146825609 146825828 2.330000e-92 350.0
28 TraesCS3A01G288300 chr5B 93.805 226 11 3 2528 2751 146826770 146826546 1.820000e-88 337.0
29 TraesCS3A01G288300 chr1A 94.667 225 10 2 2528 2751 217757516 217757739 8.400000e-92 348.0
30 TraesCS3A01G288300 chr1A 93.827 81 5 0 1302 1382 536437783 536437863 5.540000e-24 122.0
31 TraesCS3A01G288300 chr6D 87.649 251 24 3 1297 1541 465420162 465420411 6.680000e-73 285.0
32 TraesCS3A01G288300 chr4D 97.500 40 1 0 4028 4067 449722768 449722807 7.320000e-08 69.4
33 TraesCS3A01G288300 chr5A 95.238 42 2 0 4026 4067 559089107 559089066 2.630000e-07 67.6
34 TraesCS3A01G288300 chr6A 93.182 44 3 0 4027 4070 610200627 610200584 9.470000e-07 65.8
35 TraesCS3A01G288300 chr2D 95.122 41 2 0 4027 4067 148843776 148843816 9.470000e-07 65.8
36 TraesCS3A01G288300 chr4B 100.000 32 0 0 4031 4062 247571377 247571346 4.410000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G288300 chr3A 516631209 516635290 4081 True 7539.000000 7539 100.000000 1 4082 1 chr3A.!!$R1 4081
1 TraesCS3A01G288300 chr3D 397157782 397160791 3009 True 1131.666667 2362 88.822000 35 3327 3 chr3D.!!$R1 3292
2 TraesCS3A01G288300 chr3B 522776273 522779237 2964 True 1112.000000 2290 86.745667 27 3327 3 chr3B.!!$R6 3300
3 TraesCS3A01G288300 chr3B 824304498 824305053 555 True 745.000000 745 90.844000 3325 3881 1 chr3B.!!$R5 556
4 TraesCS3A01G288300 chr6B 26217733 26218295 562 False 763.000000 763 91.150000 3318 3881 1 chr6B.!!$F1 563
5 TraesCS3A01G288300 chr6B 599981102 599981658 556 False 741.000000 741 90.681000 3324 3881 1 chr6B.!!$F2 557
6 TraesCS3A01G288300 chr2B 452910172 452910732 560 False 756.000000 756 90.941000 3319 3881 1 chr2B.!!$F1 562
7 TraesCS3A01G288300 chr2B 175454048 175454603 555 True 745.000000 745 90.844000 3325 3881 1 chr2B.!!$R1 556
8 TraesCS3A01G288300 chr7B 739379294 739379851 557 False 747.000000 747 90.877000 3325 3881 1 chr7B.!!$F2 556
9 TraesCS3A01G288300 chr7B 498599215 498599769 554 True 739.000000 739 90.664000 3325 3881 1 chr7B.!!$R1 556
10 TraesCS3A01G288300 chr7B 657535546 657536114 568 False 726.000000 726 89.685000 3312 3882 1 chr7B.!!$F1 570
11 TraesCS3A01G288300 chr1B 589132453 589133008 555 False 745.000000 745 90.844000 3325 3881 1 chr1B.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 968 0.110010 GCGCTTTTCACTTCAGAGCC 60.110 55.0 0.00 0.00 0.00 4.70 F
1188 1259 0.393132 GTGGGGCTAAGACTCTTGCC 60.393 60.0 17.46 17.46 44.22 4.52 F
2130 2256 0.102844 CTACTCTGCTCTGCTCTGCC 59.897 60.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2088 0.108804 CTGCTGCAAATGCTTCTGGG 60.109 55.0 3.02 0.0 42.66 4.45 R
2209 2335 0.320073 GCCACAACAGTACTGGCGTA 60.320 55.0 26.12 0.0 41.15 4.42 R
3574 3731 0.040067 CAACGGCAAAGGCTTCACTC 60.040 55.0 0.00 0.0 40.87 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.081906 CACTGTGGCATGCGTCAAC 60.082 57.895 12.44 7.97 0.00 3.18
131 146 7.222611 CCTTGTTTAAAAATGTGGTGTCTCTTG 59.777 37.037 0.00 0.00 0.00 3.02
179 194 7.148771 TGGTTTTATATGGTAATAATCGTCGCG 60.149 37.037 0.00 0.00 0.00 5.87
192 207 3.345808 TCGCGGTCTTGCTTGTGC 61.346 61.111 6.13 0.00 40.20 4.57
239 256 2.172717 AGCGCATATATATTCCCCACCC 59.827 50.000 11.47 0.00 0.00 4.61
240 257 2.092646 GCGCATATATATTCCCCACCCA 60.093 50.000 0.30 0.00 0.00 4.51
241 258 3.541632 CGCATATATATTCCCCACCCAC 58.458 50.000 0.00 0.00 0.00 4.61
242 259 3.684413 CGCATATATATTCCCCACCCACC 60.684 52.174 0.00 0.00 0.00 4.61
270 287 8.086143 AGGGAAAGCTACAAACATACACTATA 57.914 34.615 0.00 0.00 0.00 1.31
271 288 7.985752 AGGGAAAGCTACAAACATACACTATAC 59.014 37.037 0.00 0.00 0.00 1.47
272 289 7.767198 GGGAAAGCTACAAACATACACTATACA 59.233 37.037 0.00 0.00 0.00 2.29
273 290 8.601476 GGAAAGCTACAAACATACACTATACAC 58.399 37.037 0.00 0.00 0.00 2.90
274 291 9.146984 GAAAGCTACAAACATACACTATACACA 57.853 33.333 0.00 0.00 0.00 3.72
275 292 8.475331 AAGCTACAAACATACACTATACACAC 57.525 34.615 0.00 0.00 0.00 3.82
276 293 7.837863 AGCTACAAACATACACTATACACACT 58.162 34.615 0.00 0.00 0.00 3.55
277 294 8.963725 AGCTACAAACATACACTATACACACTA 58.036 33.333 0.00 0.00 0.00 2.74
278 295 9.745880 GCTACAAACATACACTATACACACTAT 57.254 33.333 0.00 0.00 0.00 2.12
336 353 0.250901 ATGTGTCAGCCTGTGAACCC 60.251 55.000 0.00 0.00 36.74 4.11
345 362 0.179056 CCTGTGAACCCTGACGTGTT 60.179 55.000 0.00 0.00 0.00 3.32
348 365 3.399330 CTGTGAACCCTGACGTGTTTAT 58.601 45.455 0.00 0.00 0.00 1.40
361 379 5.702209 TGACGTGTTTATCCTAACTTTTCCC 59.298 40.000 0.00 0.00 0.00 3.97
373 391 6.096282 TCCTAACTTTTCCCTGTTTTCAGTTG 59.904 38.462 0.00 0.00 45.68 3.16
380 398 3.630312 TCCCTGTTTTCAGTTGCTTGTAC 59.370 43.478 0.00 0.00 45.68 2.90
384 402 4.358851 TGTTTTCAGTTGCTTGTACATGC 58.641 39.130 23.09 23.09 0.00 4.06
388 406 4.916983 TCAGTTGCTTGTACATGCTTTT 57.083 36.364 27.83 14.15 33.23 2.27
390 408 5.042593 TCAGTTGCTTGTACATGCTTTTTG 58.957 37.500 27.83 20.73 33.23 2.44
391 409 5.042593 CAGTTGCTTGTACATGCTTTTTGA 58.957 37.500 27.83 9.54 33.23 2.69
420 438 0.327259 AAGGAGGGCTTTCGGTTACC 59.673 55.000 0.00 0.00 0.00 2.85
429 447 2.477754 GCTTTCGGTTACCTGTGTGTAC 59.522 50.000 0.00 0.00 0.00 2.90
431 449 1.317613 TCGGTTACCTGTGTGTACGT 58.682 50.000 0.00 0.00 0.00 3.57
432 450 1.001487 TCGGTTACCTGTGTGTACGTG 60.001 52.381 0.00 0.00 0.00 4.49
455 473 2.716814 GCCATCCAGCCTCTCATTG 58.283 57.895 0.00 0.00 0.00 2.82
473 491 4.314096 GCACGATGCATGATTGGC 57.686 55.556 2.46 0.00 44.26 4.52
506 525 5.363101 TCTATGGTTATGCTTTCAGCTCAG 58.637 41.667 0.00 0.00 42.97 3.35
522 541 6.387465 TCAGCTCAGTTTGTAGTGTATGTAC 58.613 40.000 0.00 0.00 0.00 2.90
528 547 5.002840 CAGTTTGTAGTGTATGTACGTACGC 59.997 44.000 24.90 24.90 35.77 4.42
529 548 4.676849 TTGTAGTGTATGTACGTACGCA 57.323 40.909 30.62 18.59 37.50 5.24
530 549 4.880886 TGTAGTGTATGTACGTACGCAT 57.119 40.909 30.62 20.95 37.50 4.73
531 550 5.982465 TGTAGTGTATGTACGTACGCATA 57.018 39.130 30.62 20.19 37.50 3.14
621 640 1.100510 CATTGTCACATGGAGGGCTG 58.899 55.000 0.00 0.00 0.00 4.85
673 701 1.073964 CATGACTCTGTCTTGCACCG 58.926 55.000 0.00 0.00 32.57 4.94
735 768 3.499918 GCTGCTTCAGACTTTTGAGCTAA 59.500 43.478 0.00 0.00 32.44 3.09
736 769 4.612486 GCTGCTTCAGACTTTTGAGCTAAC 60.612 45.833 0.00 0.00 32.44 2.34
737 770 4.450976 TGCTTCAGACTTTTGAGCTAACA 58.549 39.130 0.00 0.00 0.00 2.41
738 771 5.065914 TGCTTCAGACTTTTGAGCTAACAT 58.934 37.500 0.00 0.00 0.00 2.71
739 772 6.230472 TGCTTCAGACTTTTGAGCTAACATA 58.770 36.000 0.00 0.00 0.00 2.29
751 784 6.001449 TGAGCTAACATATAGCCCACTTTT 57.999 37.500 3.96 0.00 41.25 2.27
752 785 6.423182 TGAGCTAACATATAGCCCACTTTTT 58.577 36.000 3.96 0.00 41.25 1.94
922 968 0.110010 GCGCTTTTCACTTCAGAGCC 60.110 55.000 0.00 0.00 0.00 4.70
948 994 3.704800 TCTCAGAGACTTCGGAGAGAA 57.295 47.619 0.00 0.00 45.66 2.87
961 1007 0.820871 GAGAGAAGCCGTGGTGAGAT 59.179 55.000 0.00 0.00 0.00 2.75
967 1013 2.373335 AGCCGTGGTGAGATAGAGAT 57.627 50.000 0.00 0.00 0.00 2.75
973 1019 5.496556 CCGTGGTGAGATAGAGATAGAGAT 58.503 45.833 0.00 0.00 0.00 2.75
979 1025 9.506042 TGGTGAGATAGAGATAGAGATAGAGAT 57.494 37.037 0.00 0.00 0.00 2.75
1188 1259 0.393132 GTGGGGCTAAGACTCTTGCC 60.393 60.000 17.46 17.46 44.22 4.52
1252 1323 6.093082 GCCCGTTCTATCTCTCTATCTAAGAC 59.907 46.154 0.00 0.00 0.00 3.01
1305 1401 6.875726 GCTAATATTCACTATGGATGCAGACA 59.124 38.462 0.00 0.00 0.00 3.41
1392 1488 1.766494 TGGAAGGTACGAGGCGAATA 58.234 50.000 0.00 0.00 0.00 1.75
1393 1489 1.679680 TGGAAGGTACGAGGCGAATAG 59.320 52.381 0.00 0.00 0.00 1.73
1394 1490 1.680207 GGAAGGTACGAGGCGAATAGT 59.320 52.381 0.00 0.00 0.00 2.12
1414 1510 8.818622 AATAGTAACTGAACCTTTAAATCCCC 57.181 34.615 0.00 0.00 0.00 4.81
1450 1546 4.949856 TGTTGAGATTCTTTTGATAGGGCC 59.050 41.667 0.00 0.00 0.00 5.80
1451 1547 5.196695 GTTGAGATTCTTTTGATAGGGCCT 58.803 41.667 12.58 12.58 0.00 5.19
1452 1548 6.069673 TGTTGAGATTCTTTTGATAGGGCCTA 60.070 38.462 17.16 17.16 0.00 3.93
1453 1549 6.179906 TGAGATTCTTTTGATAGGGCCTAG 57.820 41.667 19.74 5.88 0.00 3.02
1454 1550 4.979335 AGATTCTTTTGATAGGGCCTAGC 58.021 43.478 21.74 21.74 0.00 3.42
1558 1659 6.286240 TGCAGAGTTATACAACTGATCTGT 57.714 37.500 0.00 0.00 45.18 3.41
1610 1713 4.494484 GGACAACTTGACAGCTTGTTTTT 58.506 39.130 0.00 0.00 29.61 1.94
1694 1797 3.690139 TCTGCCTCGTGTCTTACTCTAAG 59.310 47.826 0.00 0.00 37.13 2.18
1698 1801 5.474532 TGCCTCGTGTCTTACTCTAAGTTTA 59.525 40.000 0.00 0.00 37.10 2.01
1713 1816 8.437575 ACTCTAAGTTTATCTTCCCTTTCAACA 58.562 33.333 0.00 0.00 37.56 3.33
1720 1823 1.956477 CTTCCCTTTCAACACCACCTG 59.044 52.381 0.00 0.00 0.00 4.00
1721 1824 0.923358 TCCCTTTCAACACCACCTGT 59.077 50.000 0.00 0.00 32.89 4.00
1722 1825 1.133915 TCCCTTTCAACACCACCTGTC 60.134 52.381 0.00 0.00 30.29 3.51
1723 1826 1.409521 CCCTTTCAACACCACCTGTCA 60.410 52.381 0.00 0.00 30.29 3.58
1739 1842 6.023435 CACCTGTCAATGTGTTGATAATTCG 58.977 40.000 0.00 0.00 45.46 3.34
1765 1868 3.923017 AGCCAAGTGTGCATTTCTTAC 57.077 42.857 0.00 0.00 0.00 2.34
1766 1869 3.490348 AGCCAAGTGTGCATTTCTTACT 58.510 40.909 0.00 0.00 0.00 2.24
1767 1870 3.254166 AGCCAAGTGTGCATTTCTTACTG 59.746 43.478 0.00 0.00 0.00 2.74
1825 1928 2.721425 TTTCTTATTAGTGGGGCGGG 57.279 50.000 0.00 0.00 0.00 6.13
1921 2027 2.358957 TCAAAGTAGAGTAGCGCCGTA 58.641 47.619 2.29 0.00 0.00 4.02
1922 2028 2.353889 TCAAAGTAGAGTAGCGCCGTAG 59.646 50.000 2.29 0.00 0.00 3.51
1923 2029 0.662085 AAGTAGAGTAGCGCCGTAGC 59.338 55.000 2.29 0.00 37.41 3.58
1924 2030 1.165284 AGTAGAGTAGCGCCGTAGCC 61.165 60.000 2.29 0.00 38.01 3.93
1964 2088 1.950098 GAGCGCAACGTCTCAGAAGC 61.950 60.000 11.47 0.00 33.08 3.86
1978 2102 0.893447 AGAAGCCCAGAAGCATTTGC 59.107 50.000 0.00 0.00 42.49 3.68
2016 2140 3.415237 CTGTCAGACGCAGGAAGAG 57.585 57.895 0.00 0.00 0.00 2.85
2020 2144 2.102420 TGTCAGACGCAGGAAGAGAAAA 59.898 45.455 0.00 0.00 0.00 2.29
2021 2145 3.131396 GTCAGACGCAGGAAGAGAAAAA 58.869 45.455 0.00 0.00 0.00 1.94
2022 2146 3.748568 GTCAGACGCAGGAAGAGAAAAAT 59.251 43.478 0.00 0.00 0.00 1.82
2023 2147 3.748048 TCAGACGCAGGAAGAGAAAAATG 59.252 43.478 0.00 0.00 0.00 2.32
2024 2148 3.499918 CAGACGCAGGAAGAGAAAAATGT 59.500 43.478 0.00 0.00 0.00 2.71
2063 2187 2.917227 TCTGTGCGCCTCCAGTCA 60.917 61.111 4.18 0.00 0.00 3.41
2064 2188 2.236223 CTCTGTGCGCCTCCAGTCAT 62.236 60.000 4.18 0.00 0.00 3.06
2065 2189 1.376424 CTGTGCGCCTCCAGTCATT 60.376 57.895 4.18 0.00 0.00 2.57
2066 2190 1.364626 CTGTGCGCCTCCAGTCATTC 61.365 60.000 4.18 0.00 0.00 2.67
2067 2191 1.375908 GTGCGCCTCCAGTCATTCA 60.376 57.895 4.18 0.00 0.00 2.57
2075 2199 4.321156 CGCCTCCAGTCATTCATTTCAAAA 60.321 41.667 0.00 0.00 0.00 2.44
2113 2239 7.669089 AGTGAAAGAAAACCCCAAATTTCTA 57.331 32.000 1.60 0.00 43.24 2.10
2127 2253 5.177326 CAAATTTCTACTCTGCTCTGCTCT 58.823 41.667 0.00 0.00 0.00 4.09
2128 2254 3.865011 TTTCTACTCTGCTCTGCTCTG 57.135 47.619 0.00 0.00 0.00 3.35
2130 2256 0.102844 CTACTCTGCTCTGCTCTGCC 59.897 60.000 0.00 0.00 0.00 4.85
2131 2257 1.661498 TACTCTGCTCTGCTCTGCCG 61.661 60.000 0.00 0.00 0.00 5.69
2132 2258 4.447989 TCTGCTCTGCTCTGCCGC 62.448 66.667 0.00 0.00 0.00 6.53
2133 2259 4.754667 CTGCTCTGCTCTGCCGCA 62.755 66.667 0.00 0.00 38.40 5.69
2165 2291 1.201921 GCTAATGGCGAACAGTGAACG 60.202 52.381 0.00 3.13 0.00 3.95
2208 2334 5.727434 TCCGGAAAGCTTTTAGGTTAGTAG 58.273 41.667 24.13 6.35 34.42 2.57
2209 2335 5.246883 TCCGGAAAGCTTTTAGGTTAGTAGT 59.753 40.000 24.13 0.00 34.42 2.73
2210 2336 6.437162 TCCGGAAAGCTTTTAGGTTAGTAGTA 59.563 38.462 24.13 8.03 34.42 1.82
2211 2337 6.533012 CCGGAAAGCTTTTAGGTTAGTAGTAC 59.467 42.308 14.05 0.00 34.42 2.73
2212 2338 6.252228 CGGAAAGCTTTTAGGTTAGTAGTACG 59.748 42.308 14.05 0.00 34.42 3.67
2213 2339 6.035435 GGAAAGCTTTTAGGTTAGTAGTACGC 59.965 42.308 14.05 0.00 34.42 4.42
2214 2340 5.003692 AGCTTTTAGGTTAGTAGTACGCC 57.996 43.478 0.00 0.00 0.00 5.68
2215 2341 4.463891 AGCTTTTAGGTTAGTAGTACGCCA 59.536 41.667 12.04 0.00 0.00 5.69
2216 2342 4.802563 GCTTTTAGGTTAGTAGTACGCCAG 59.197 45.833 12.04 4.40 0.00 4.85
2261 2387 0.249322 AAACACAGGTCACCGACTCG 60.249 55.000 0.00 0.00 32.47 4.18
2300 2426 3.771160 GTGGGCGTCGATCCACCT 61.771 66.667 20.64 0.00 45.60 4.00
2301 2427 3.458163 TGGGCGTCGATCCACCTC 61.458 66.667 0.00 0.00 0.00 3.85
2302 2428 4.222847 GGGCGTCGATCCACCTCC 62.223 72.222 0.00 0.00 0.00 4.30
2303 2429 4.570663 GGCGTCGATCCACCTCCG 62.571 72.222 0.00 0.00 0.00 4.63
2309 2435 2.202892 GATCCACCTCCGTTCGGC 60.203 66.667 6.35 0.00 0.00 5.54
2342 2468 1.595929 TTGGCTCCGGTGTCGTTTC 60.596 57.895 0.00 0.00 33.95 2.78
2539 2681 4.449131 GGTGCCTAAGATTTGGTACTACC 58.551 47.826 12.31 0.00 38.35 3.18
2540 2682 4.163649 GGTGCCTAAGATTTGGTACTACCT 59.836 45.833 12.31 0.00 39.58 3.08
2541 2683 5.358090 GTGCCTAAGATTTGGTACTACCTC 58.642 45.833 6.79 0.00 39.58 3.85
2542 2684 4.407945 TGCCTAAGATTTGGTACTACCTCC 59.592 45.833 6.79 0.00 39.58 4.30
2543 2685 4.501058 GCCTAAGATTTGGTACTACCTCCG 60.501 50.000 6.79 0.00 39.58 4.63
2544 2686 4.648307 CCTAAGATTTGGTACTACCTCCGT 59.352 45.833 6.79 0.00 39.58 4.69
2545 2687 4.732672 AAGATTTGGTACTACCTCCGTC 57.267 45.455 6.79 0.83 39.58 4.79
2546 2688 3.029570 AGATTTGGTACTACCTCCGTCC 58.970 50.000 6.79 0.00 39.58 4.79
2547 2689 1.560505 TTTGGTACTACCTCCGTCCC 58.439 55.000 6.79 0.00 39.58 4.46
2548 2690 0.680921 TTGGTACTACCTCCGTCCCG 60.681 60.000 6.79 0.00 39.58 5.14
2549 2691 2.556840 TGGTACTACCTCCGTCCCGG 62.557 65.000 6.79 0.00 41.75 5.73
2559 2701 3.953201 CCGTCCCGGTGTATAAGTC 57.047 57.895 0.00 0.00 42.73 3.01
2560 2702 1.105457 CCGTCCCGGTGTATAAGTCA 58.895 55.000 0.00 0.00 42.73 3.41
2561 2703 1.684983 CCGTCCCGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 42.73 3.06
2562 2704 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
2563 2705 3.431207 CCGTCCCGGTGTATAAGTCATTT 60.431 47.826 0.00 0.00 42.73 2.32
2564 2706 3.554324 CGTCCCGGTGTATAAGTCATTTG 59.446 47.826 0.00 0.00 0.00 2.32
2565 2707 3.311596 GTCCCGGTGTATAAGTCATTTGC 59.688 47.826 0.00 0.00 0.00 3.68
2566 2708 2.286833 CCCGGTGTATAAGTCATTTGCG 59.713 50.000 0.00 0.00 0.00 4.85
2567 2709 2.933906 CCGGTGTATAAGTCATTTGCGT 59.066 45.455 0.00 0.00 0.00 5.24
2568 2710 4.114073 CCGGTGTATAAGTCATTTGCGTA 58.886 43.478 0.00 0.00 0.00 4.42
2569 2711 4.208460 CCGGTGTATAAGTCATTTGCGTAG 59.792 45.833 0.00 0.00 0.00 3.51
2570 2712 4.802039 CGGTGTATAAGTCATTTGCGTAGT 59.198 41.667 0.00 0.00 0.00 2.73
2571 2713 5.290158 CGGTGTATAAGTCATTTGCGTAGTT 59.710 40.000 0.00 0.00 0.00 2.24
2572 2714 6.183360 CGGTGTATAAGTCATTTGCGTAGTTT 60.183 38.462 0.00 0.00 0.00 2.66
2573 2715 7.524065 GGTGTATAAGTCATTTGCGTAGTTTT 58.476 34.615 0.00 0.00 0.00 2.43
2574 2716 8.658609 GGTGTATAAGTCATTTGCGTAGTTTTA 58.341 33.333 0.00 0.00 0.00 1.52
2575 2717 9.685005 GTGTATAAGTCATTTGCGTAGTTTTAG 57.315 33.333 0.00 0.00 0.00 1.85
2576 2718 8.875803 TGTATAAGTCATTTGCGTAGTTTTAGG 58.124 33.333 0.00 0.00 0.00 2.69
2577 2719 7.916914 ATAAGTCATTTGCGTAGTTTTAGGT 57.083 32.000 0.00 0.00 0.00 3.08
2578 2720 5.857822 AGTCATTTGCGTAGTTTTAGGTC 57.142 39.130 0.00 0.00 0.00 3.85
2579 2721 4.387862 AGTCATTTGCGTAGTTTTAGGTCG 59.612 41.667 0.00 0.00 0.00 4.79
2580 2722 4.386652 GTCATTTGCGTAGTTTTAGGTCGA 59.613 41.667 0.00 0.00 0.00 4.20
2581 2723 4.386652 TCATTTGCGTAGTTTTAGGTCGAC 59.613 41.667 7.13 7.13 0.00 4.20
2582 2724 3.367992 TTGCGTAGTTTTAGGTCGACA 57.632 42.857 18.91 0.00 0.00 4.35
2583 2725 3.367992 TGCGTAGTTTTAGGTCGACAA 57.632 42.857 18.91 0.31 0.00 3.18
2584 2726 3.916761 TGCGTAGTTTTAGGTCGACAAT 58.083 40.909 18.91 7.85 0.00 2.71
2585 2727 4.309099 TGCGTAGTTTTAGGTCGACAATT 58.691 39.130 18.91 4.78 0.00 2.32
2586 2728 4.751098 TGCGTAGTTTTAGGTCGACAATTT 59.249 37.500 18.91 2.13 0.00 1.82
2587 2729 5.925397 TGCGTAGTTTTAGGTCGACAATTTA 59.075 36.000 18.91 1.12 0.00 1.40
2588 2730 6.423302 TGCGTAGTTTTAGGTCGACAATTTAA 59.577 34.615 18.91 7.35 0.00 1.52
2589 2731 6.733725 GCGTAGTTTTAGGTCGACAATTTAAC 59.266 38.462 18.91 13.49 0.00 2.01
2590 2732 7.359514 GCGTAGTTTTAGGTCGACAATTTAACT 60.360 37.037 18.91 19.05 0.00 2.24
2591 2733 9.128107 CGTAGTTTTAGGTCGACAATTTAACTA 57.872 33.333 18.91 18.16 0.00 2.24
2594 2736 9.939802 AGTTTTAGGTCGACAATTTAACTATCT 57.060 29.630 18.91 2.88 0.00 1.98
2707 2849 9.594038 CACATATTTAATTCCTTAAATCGACGG 57.406 33.333 6.60 0.00 43.31 4.79
2708 2850 8.287503 ACATATTTAATTCCTTAAATCGACGGC 58.712 33.333 6.60 0.00 43.31 5.68
2709 2851 5.488645 TTTAATTCCTTAAATCGACGGCC 57.511 39.130 0.00 0.00 33.05 6.13
2710 2852 3.277142 AATTCCTTAAATCGACGGCCT 57.723 42.857 0.00 0.00 0.00 5.19
2711 2853 4.411256 AATTCCTTAAATCGACGGCCTA 57.589 40.909 0.00 0.00 0.00 3.93
2712 2854 3.447918 TTCCTTAAATCGACGGCCTAG 57.552 47.619 0.00 0.00 0.00 3.02
2713 2855 2.658285 TCCTTAAATCGACGGCCTAGA 58.342 47.619 0.00 0.00 0.00 2.43
2714 2856 2.360165 TCCTTAAATCGACGGCCTAGAC 59.640 50.000 0.00 0.00 0.00 2.59
2715 2857 2.361438 CCTTAAATCGACGGCCTAGACT 59.639 50.000 0.00 0.00 0.00 3.24
2716 2858 3.567164 CCTTAAATCGACGGCCTAGACTA 59.433 47.826 0.00 0.00 0.00 2.59
2717 2859 4.535116 CTTAAATCGACGGCCTAGACTAC 58.465 47.826 0.00 0.00 0.00 2.73
2718 2860 0.942962 AATCGACGGCCTAGACTACG 59.057 55.000 0.00 0.00 0.00 3.51
2719 2861 1.505477 ATCGACGGCCTAGACTACGC 61.505 60.000 0.00 0.00 0.00 4.42
2720 2862 2.327244 GACGGCCTAGACTACGCG 59.673 66.667 3.53 3.53 0.00 6.01
2721 2863 2.124983 ACGGCCTAGACTACGCGA 60.125 61.111 15.93 0.00 0.00 5.87
2722 2864 1.709147 GACGGCCTAGACTACGCGAA 61.709 60.000 15.93 0.00 0.00 4.70
2723 2865 1.099879 ACGGCCTAGACTACGCGAAT 61.100 55.000 15.93 0.00 0.00 3.34
2724 2866 0.660595 CGGCCTAGACTACGCGAATG 60.661 60.000 15.93 4.47 0.00 2.67
2725 2867 0.666913 GGCCTAGACTACGCGAATGA 59.333 55.000 15.93 0.00 0.00 2.57
2726 2868 1.599916 GGCCTAGACTACGCGAATGAC 60.600 57.143 15.93 2.47 0.00 3.06
2727 2869 1.334243 GCCTAGACTACGCGAATGACT 59.666 52.381 15.93 10.29 0.00 3.41
2728 2870 2.223525 GCCTAGACTACGCGAATGACTT 60.224 50.000 15.93 0.00 0.00 3.01
2729 2871 3.003068 GCCTAGACTACGCGAATGACTTA 59.997 47.826 15.93 0.00 0.00 2.24
2730 2872 4.320348 GCCTAGACTACGCGAATGACTTAT 60.320 45.833 15.93 0.00 0.00 1.73
2731 2873 5.106791 GCCTAGACTACGCGAATGACTTATA 60.107 44.000 15.93 0.00 0.00 0.98
2732 2874 6.305639 CCTAGACTACGCGAATGACTTATAC 58.694 44.000 15.93 0.00 0.00 1.47
2733 2875 5.746307 AGACTACGCGAATGACTTATACA 57.254 39.130 15.93 0.00 0.00 2.29
2734 2876 5.508872 AGACTACGCGAATGACTTATACAC 58.491 41.667 15.93 0.00 0.00 2.90
2735 2877 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
2736 2878 2.456989 ACGCGAATGACTTATACACCG 58.543 47.619 15.93 0.00 0.00 4.94
2737 2879 2.097954 ACGCGAATGACTTATACACCGA 59.902 45.455 15.93 0.00 0.00 4.69
2738 2880 2.719556 CGCGAATGACTTATACACCGAG 59.280 50.000 0.00 0.00 0.00 4.63
2739 2881 3.547413 CGCGAATGACTTATACACCGAGA 60.547 47.826 0.00 0.00 0.00 4.04
2740 2882 3.729716 GCGAATGACTTATACACCGAGAC 59.270 47.826 0.00 0.00 0.00 3.36
2741 2883 3.966844 CGAATGACTTATACACCGAGACG 59.033 47.826 0.00 0.00 0.00 4.18
2767 2909 1.751924 AGTACTACTGCTACTGCTGCC 59.248 52.381 0.00 0.00 41.07 4.85
2810 2952 1.445582 CCTTCACCGTACGGCTCAC 60.446 63.158 33.62 0.00 39.32 3.51
2878 3020 9.214957 AGTGAAAATATGTTGATTTACGAGTCA 57.785 29.630 0.00 0.00 0.00 3.41
2912 3058 5.286082 ACGAGCGATCATTTTAACATTTTGC 59.714 36.000 0.00 0.00 0.00 3.68
2976 3122 2.638480 TGGAGAACAAGAAGGTGGTG 57.362 50.000 0.00 0.00 0.00 4.17
3000 3146 3.152400 GGGGACGTGACGCCCTAT 61.152 66.667 27.57 1.22 40.87 2.57
3064 3210 4.938756 TGGTGGCCCCCAAGTCCT 62.939 66.667 3.61 0.00 34.18 3.85
3128 3277 2.033299 GTGGGTGTGACACATTTCACTG 59.967 50.000 18.40 0.00 45.34 3.66
3129 3278 2.092699 TGGGTGTGACACATTTCACTGA 60.093 45.455 18.40 0.00 45.34 3.41
3138 3287 8.075574 TGTGACACATTTCACTGATGATAAAAC 58.924 33.333 3.56 0.00 45.34 2.43
3167 3316 0.452987 ATGCCATGATTGTCACGCAC 59.547 50.000 0.00 0.00 37.68 5.34
3237 3386 9.440761 ACTATTGGAAGATTGTAACTAGGAGAT 57.559 33.333 0.00 0.00 0.00 2.75
3241 3390 8.146053 TGGAAGATTGTAACTAGGAGATCAAA 57.854 34.615 0.00 0.00 0.00 2.69
3252 3401 7.560796 ACTAGGAGATCAAAGAAAAAGAGGA 57.439 36.000 0.00 0.00 0.00 3.71
3256 3405 5.948758 GGAGATCAAAGAAAAAGAGGATGGT 59.051 40.000 0.00 0.00 0.00 3.55
3270 3419 4.540099 AGAGGATGGTTTGGGTCTAATTGA 59.460 41.667 0.00 0.00 0.00 2.57
3279 3428 7.556275 TGGTTTGGGTCTAATTGATTGATCTAC 59.444 37.037 0.00 0.00 0.00 2.59
3280 3429 7.775561 GGTTTGGGTCTAATTGATTGATCTACT 59.224 37.037 0.00 0.00 0.00 2.57
3281 3430 8.831550 GTTTGGGTCTAATTGATTGATCTACTC 58.168 37.037 0.00 0.00 0.00 2.59
3284 3433 8.548025 TGGGTCTAATTGATTGATCTACTCAAA 58.452 33.333 8.53 0.00 46.62 2.69
3285 3434 9.396022 GGGTCTAATTGATTGATCTACTCAAAA 57.604 33.333 8.53 2.22 46.62 2.44
3354 3507 4.694982 TGCATGATAACACGTGTCTCATTT 59.305 37.500 29.67 17.29 31.85 2.32
3390 3546 7.709613 AGAACAAAGTACAAGTCACGTAAGAAT 59.290 33.333 0.00 0.00 43.62 2.40
3408 3564 5.852738 AGAATCGACATGACAAAACTGAG 57.147 39.130 0.00 0.00 0.00 3.35
3418 3574 6.712095 ACATGACAAAACTGAGAAGATAGCAA 59.288 34.615 0.00 0.00 0.00 3.91
3421 3577 8.169977 TGACAAAACTGAGAAGATAGCAAAAT 57.830 30.769 0.00 0.00 0.00 1.82
3439 3595 5.448360 GCAAAATATCTCTGAGCTTGACACC 60.448 44.000 0.00 0.00 0.00 4.16
3455 3611 2.034066 CCAACGCCCATCACCTGT 59.966 61.111 0.00 0.00 0.00 4.00
3458 3614 0.606401 CAACGCCCATCACCTGTCTT 60.606 55.000 0.00 0.00 0.00 3.01
3518 3675 2.120718 ACCTCCTCACCCGAGCTT 59.879 61.111 0.00 0.00 38.00 3.74
3523 3680 2.651361 CTCACCCGAGCTTGACGT 59.349 61.111 1.22 0.00 31.00 4.34
3534 3691 1.079819 CTTGACGTGGCTCCATCGT 60.080 57.895 13.46 13.46 36.79 3.73
3536 3693 0.604073 TTGACGTGGCTCCATCGTTA 59.396 50.000 14.31 9.74 35.26 3.18
3538 3695 1.001068 TGACGTGGCTCCATCGTTAAA 59.999 47.619 14.31 5.23 35.26 1.52
3558 3715 2.359230 GCAGCTTTGCGGACCTCT 60.359 61.111 0.00 0.00 0.00 3.69
3597 3754 0.318699 GAAGCCTTTGCCGTTGAACC 60.319 55.000 0.00 0.00 38.69 3.62
3610 3767 1.060729 TTGAACCAATCAGACCGGGA 58.939 50.000 6.32 0.00 39.77 5.14
3628 3785 2.279851 CAACACTCCGGACACGCA 60.280 61.111 0.00 0.00 39.22 5.24
3721 3878 1.450669 ACGAACCCAGCACACGTTT 60.451 52.632 0.00 0.00 33.48 3.60
3750 3907 1.098869 AGATGTCGTCGATGCAGACT 58.901 50.000 0.00 3.43 38.90 3.24
3784 3941 1.952621 CTCCTGGACTACCTCCCAAA 58.047 55.000 0.00 0.00 38.49 3.28
3791 3948 1.975680 GACTACCTCCCAAACTCCACA 59.024 52.381 0.00 0.00 0.00 4.17
3792 3949 2.572104 GACTACCTCCCAAACTCCACAT 59.428 50.000 0.00 0.00 0.00 3.21
3804 3961 1.938657 CTCCACATCGACGCTGGAGT 61.939 60.000 19.92 1.34 44.28 3.85
3840 3997 0.320374 GTGGAACCCGATGACACAGA 59.680 55.000 0.00 0.00 32.58 3.41
3856 4013 2.094026 CACAGATCCACCACGAGAATGA 60.094 50.000 0.00 0.00 0.00 2.57
3857 4014 2.768527 ACAGATCCACCACGAGAATGAT 59.231 45.455 0.00 0.00 0.00 2.45
3859 4016 2.768527 AGATCCACCACGAGAATGATGT 59.231 45.455 0.00 0.00 0.00 3.06
3882 4039 1.748879 GCCACGCCATCCTTGCTAA 60.749 57.895 0.00 0.00 0.00 3.09
3883 4040 1.993369 GCCACGCCATCCTTGCTAAC 61.993 60.000 0.00 0.00 0.00 2.34
3884 4041 1.376609 CCACGCCATCCTTGCTAACC 61.377 60.000 0.00 0.00 0.00 2.85
3885 4042 0.392998 CACGCCATCCTTGCTAACCT 60.393 55.000 0.00 0.00 0.00 3.50
3886 4043 1.134521 CACGCCATCCTTGCTAACCTA 60.135 52.381 0.00 0.00 0.00 3.08
3887 4044 1.139058 ACGCCATCCTTGCTAACCTAG 59.861 52.381 0.00 0.00 0.00 3.02
3888 4045 1.412710 CGCCATCCTTGCTAACCTAGA 59.587 52.381 0.00 0.00 0.00 2.43
3889 4046 2.803492 CGCCATCCTTGCTAACCTAGAC 60.803 54.545 0.00 0.00 0.00 2.59
3890 4047 2.436173 GCCATCCTTGCTAACCTAGACT 59.564 50.000 0.00 0.00 0.00 3.24
3891 4048 3.641906 GCCATCCTTGCTAACCTAGACTA 59.358 47.826 0.00 0.00 0.00 2.59
3892 4049 4.501743 GCCATCCTTGCTAACCTAGACTAC 60.502 50.000 0.00 0.00 0.00 2.73
3893 4050 4.649674 CCATCCTTGCTAACCTAGACTACA 59.350 45.833 0.00 0.00 0.00 2.74
3894 4051 5.305644 CCATCCTTGCTAACCTAGACTACAT 59.694 44.000 0.00 0.00 0.00 2.29
3895 4052 5.854010 TCCTTGCTAACCTAGACTACATG 57.146 43.478 0.00 0.00 0.00 3.21
3896 4053 5.516044 TCCTTGCTAACCTAGACTACATGA 58.484 41.667 0.00 0.00 0.00 3.07
3897 4054 5.594725 TCCTTGCTAACCTAGACTACATGAG 59.405 44.000 0.00 0.00 0.00 2.90
3898 4055 5.594725 CCTTGCTAACCTAGACTACATGAGA 59.405 44.000 0.00 0.00 0.00 3.27
3899 4056 6.238897 CCTTGCTAACCTAGACTACATGAGAG 60.239 46.154 0.00 0.00 0.00 3.20
3900 4057 5.756918 TGCTAACCTAGACTACATGAGAGT 58.243 41.667 0.00 1.66 0.00 3.24
3901 4058 6.896883 TGCTAACCTAGACTACATGAGAGTA 58.103 40.000 0.00 0.00 0.00 2.59
3902 4059 7.344134 TGCTAACCTAGACTACATGAGAGTAA 58.656 38.462 0.00 0.00 0.00 2.24
3903 4060 7.832685 TGCTAACCTAGACTACATGAGAGTAAA 59.167 37.037 0.00 0.00 0.00 2.01
3904 4061 8.684520 GCTAACCTAGACTACATGAGAGTAAAA 58.315 37.037 0.00 0.00 0.00 1.52
3907 4064 7.838884 ACCTAGACTACATGAGAGTAAAAACC 58.161 38.462 0.00 0.00 0.00 3.27
3908 4065 7.453752 ACCTAGACTACATGAGAGTAAAAACCA 59.546 37.037 0.00 0.00 0.00 3.67
3909 4066 8.478877 CCTAGACTACATGAGAGTAAAAACCAT 58.521 37.037 0.00 0.00 0.00 3.55
3910 4067 9.522804 CTAGACTACATGAGAGTAAAAACCATC 57.477 37.037 0.00 0.00 0.00 3.51
3911 4068 7.331791 AGACTACATGAGAGTAAAAACCATCC 58.668 38.462 0.00 0.00 0.00 3.51
3912 4069 7.016153 ACTACATGAGAGTAAAAACCATCCA 57.984 36.000 0.00 0.00 0.00 3.41
3913 4070 6.879458 ACTACATGAGAGTAAAAACCATCCAC 59.121 38.462 0.00 0.00 0.00 4.02
3914 4071 4.695455 ACATGAGAGTAAAAACCATCCACG 59.305 41.667 0.00 0.00 0.00 4.94
3915 4072 4.345859 TGAGAGTAAAAACCATCCACGT 57.654 40.909 0.00 0.00 0.00 4.49
3916 4073 4.062293 TGAGAGTAAAAACCATCCACGTG 58.938 43.478 9.08 9.08 0.00 4.49
3917 4074 2.812011 AGAGTAAAAACCATCCACGTGC 59.188 45.455 10.91 0.00 0.00 5.34
3918 4075 2.550606 GAGTAAAAACCATCCACGTGCA 59.449 45.455 10.91 0.00 0.00 4.57
3919 4076 2.292292 AGTAAAAACCATCCACGTGCAC 59.708 45.455 10.91 6.82 0.00 4.57
3920 4077 0.387565 AAAAACCATCCACGTGCACC 59.612 50.000 10.91 0.00 0.00 5.01
3921 4078 0.753479 AAAACCATCCACGTGCACCA 60.753 50.000 10.91 0.00 0.00 4.17
3922 4079 0.539438 AAACCATCCACGTGCACCAT 60.539 50.000 10.91 0.00 0.00 3.55
3923 4080 1.243342 AACCATCCACGTGCACCATG 61.243 55.000 10.91 10.02 0.00 3.66
3924 4081 2.486504 CATCCACGTGCACCATGC 59.513 61.111 10.91 0.00 45.29 4.06
3925 4082 2.042259 CATCCACGTGCACCATGCT 61.042 57.895 10.91 0.00 45.31 3.79
3926 4083 1.303561 ATCCACGTGCACCATGCTT 60.304 52.632 10.91 0.00 45.31 3.91
3927 4084 0.895100 ATCCACGTGCACCATGCTTT 60.895 50.000 10.91 0.00 45.31 3.51
3928 4085 0.250510 TCCACGTGCACCATGCTTTA 60.251 50.000 10.91 0.00 45.31 1.85
3929 4086 0.168788 CCACGTGCACCATGCTTTAG 59.831 55.000 10.91 0.00 45.31 1.85
3930 4087 0.454957 CACGTGCACCATGCTTTAGC 60.455 55.000 12.15 0.00 45.31 3.09
3931 4088 1.226101 CGTGCACCATGCTTTAGCG 60.226 57.895 12.15 0.00 45.31 4.26
3932 4089 1.137404 GTGCACCATGCTTTAGCGG 59.863 57.895 5.22 0.00 45.31 5.52
3933 4090 1.303236 TGCACCATGCTTTAGCGGT 60.303 52.632 2.02 0.00 45.31 5.68
3934 4091 0.893270 TGCACCATGCTTTAGCGGTT 60.893 50.000 0.00 0.00 45.31 4.44
3935 4092 0.179163 GCACCATGCTTTAGCGGTTC 60.179 55.000 0.00 0.00 45.83 3.62
3936 4093 1.453155 CACCATGCTTTAGCGGTTCT 58.547 50.000 0.00 0.00 45.83 3.01
3937 4094 1.131126 CACCATGCTTTAGCGGTTCTG 59.869 52.381 0.00 0.00 45.83 3.02
3938 4095 1.271379 ACCATGCTTTAGCGGTTCTGT 60.271 47.619 0.00 0.00 45.83 3.41
3939 4096 1.812571 CCATGCTTTAGCGGTTCTGTT 59.187 47.619 0.00 0.00 45.83 3.16
3940 4097 2.228822 CCATGCTTTAGCGGTTCTGTTT 59.771 45.455 0.00 0.00 45.83 2.83
3941 4098 3.305335 CCATGCTTTAGCGGTTCTGTTTT 60.305 43.478 0.00 0.00 45.83 2.43
3942 4099 3.347958 TGCTTTAGCGGTTCTGTTTTG 57.652 42.857 0.00 0.00 45.83 2.44
3943 4100 2.034053 TGCTTTAGCGGTTCTGTTTTGG 59.966 45.455 0.00 0.00 45.83 3.28
3944 4101 2.292292 GCTTTAGCGGTTCTGTTTTGGA 59.708 45.455 0.00 0.00 0.00 3.53
3945 4102 3.852205 GCTTTAGCGGTTCTGTTTTGGAC 60.852 47.826 0.00 0.00 0.00 4.02
3946 4103 1.886886 TAGCGGTTCTGTTTTGGACC 58.113 50.000 0.00 0.00 0.00 4.46
3947 4104 0.106918 AGCGGTTCTGTTTTGGACCA 60.107 50.000 0.00 0.00 0.00 4.02
3948 4105 0.958822 GCGGTTCTGTTTTGGACCAT 59.041 50.000 0.00 0.00 0.00 3.55
3949 4106 1.339929 GCGGTTCTGTTTTGGACCATT 59.660 47.619 0.00 0.00 0.00 3.16
3950 4107 2.554893 GCGGTTCTGTTTTGGACCATTA 59.445 45.455 0.00 0.00 0.00 1.90
3951 4108 3.610821 GCGGTTCTGTTTTGGACCATTAC 60.611 47.826 0.00 0.00 0.00 1.89
3952 4109 3.364565 CGGTTCTGTTTTGGACCATTACG 60.365 47.826 0.00 0.00 0.00 3.18
3953 4110 3.566742 GGTTCTGTTTTGGACCATTACGT 59.433 43.478 0.00 0.00 0.00 3.57
3954 4111 4.756135 GGTTCTGTTTTGGACCATTACGTA 59.244 41.667 0.00 0.00 0.00 3.57
3955 4112 5.413523 GGTTCTGTTTTGGACCATTACGTAT 59.586 40.000 0.00 0.00 0.00 3.06
3956 4113 6.311723 GTTCTGTTTTGGACCATTACGTATG 58.688 40.000 0.00 0.00 0.00 2.39
3957 4114 5.553123 TCTGTTTTGGACCATTACGTATGT 58.447 37.500 0.00 0.00 31.99 2.29
3958 4115 6.699366 TCTGTTTTGGACCATTACGTATGTA 58.301 36.000 0.00 0.00 31.99 2.29
3959 4116 7.332557 TCTGTTTTGGACCATTACGTATGTAT 58.667 34.615 0.00 0.00 31.99 2.29
3960 4117 7.279090 TCTGTTTTGGACCATTACGTATGTATG 59.721 37.037 0.00 0.00 31.99 2.39
3961 4118 6.316640 TGTTTTGGACCATTACGTATGTATGG 59.683 38.462 18.95 18.95 36.31 2.74
3962 4119 4.610605 TGGACCATTACGTATGTATGGG 57.389 45.455 22.65 15.06 35.39 4.00
3963 4120 3.968649 TGGACCATTACGTATGTATGGGT 59.031 43.478 22.65 17.26 39.01 4.51
3964 4121 4.202274 TGGACCATTACGTATGTATGGGTG 60.202 45.833 22.65 4.92 37.44 4.61
3965 4122 4.312443 GACCATTACGTATGTATGGGTGG 58.688 47.826 22.65 14.67 37.44 4.61
3966 4123 3.712733 ACCATTACGTATGTATGGGTGGT 59.287 43.478 22.65 16.04 36.53 4.16
3967 4124 4.062293 CCATTACGTATGTATGGGTGGTG 58.938 47.826 14.53 0.00 31.26 4.17
3968 4125 4.443739 CCATTACGTATGTATGGGTGGTGT 60.444 45.833 14.53 0.00 31.26 4.16
3969 4126 4.822685 TTACGTATGTATGGGTGGTGTT 57.177 40.909 0.00 0.00 0.00 3.32
3970 4127 3.706600 ACGTATGTATGGGTGGTGTTT 57.293 42.857 0.00 0.00 0.00 2.83
3971 4128 4.023726 ACGTATGTATGGGTGGTGTTTT 57.976 40.909 0.00 0.00 0.00 2.43
3972 4129 4.400120 ACGTATGTATGGGTGGTGTTTTT 58.600 39.130 0.00 0.00 0.00 1.94
3996 4153 7.615582 TTTTAACATCAGTAGGCATCTCTTG 57.384 36.000 0.00 0.00 0.00 3.02
3997 4154 4.833478 AACATCAGTAGGCATCTCTTGT 57.167 40.909 0.00 0.00 0.00 3.16
3998 4155 5.939764 AACATCAGTAGGCATCTCTTGTA 57.060 39.130 0.00 0.00 0.00 2.41
3999 4156 5.269505 ACATCAGTAGGCATCTCTTGTAC 57.730 43.478 0.00 0.00 0.00 2.90
4000 4157 4.202060 ACATCAGTAGGCATCTCTTGTACG 60.202 45.833 0.00 0.00 0.00 3.67
4001 4158 3.353557 TCAGTAGGCATCTCTTGTACGT 58.646 45.455 0.00 0.00 0.00 3.57
4002 4159 4.520179 TCAGTAGGCATCTCTTGTACGTA 58.480 43.478 0.00 0.00 0.00 3.57
4003 4160 4.945543 TCAGTAGGCATCTCTTGTACGTAA 59.054 41.667 0.00 0.00 0.00 3.18
4004 4161 5.035443 CAGTAGGCATCTCTTGTACGTAAC 58.965 45.833 0.00 0.00 0.00 2.50
4005 4162 3.146618 AGGCATCTCTTGTACGTAACG 57.853 47.619 0.00 0.00 0.00 3.18
4006 4163 2.490903 AGGCATCTCTTGTACGTAACGT 59.509 45.455 0.00 0.00 44.35 3.99
4007 4164 2.597305 GGCATCTCTTGTACGTAACGTG 59.403 50.000 0.00 0.00 41.39 4.49
4008 4165 3.240069 GCATCTCTTGTACGTAACGTGT 58.760 45.455 0.00 0.00 41.39 4.49
4009 4166 3.300066 GCATCTCTTGTACGTAACGTGTC 59.700 47.826 0.00 0.00 41.39 3.67
4010 4167 3.542712 TCTCTTGTACGTAACGTGTCC 57.457 47.619 0.00 0.00 41.39 4.02
4011 4168 2.226437 TCTCTTGTACGTAACGTGTCCC 59.774 50.000 0.00 0.00 41.39 4.46
4012 4169 1.269448 TCTTGTACGTAACGTGTCCCC 59.731 52.381 0.00 0.00 41.39 4.81
4013 4170 1.270550 CTTGTACGTAACGTGTCCCCT 59.729 52.381 0.00 0.00 41.39 4.79
4014 4171 1.327303 TGTACGTAACGTGTCCCCTT 58.673 50.000 0.00 0.00 41.39 3.95
4015 4172 1.000385 TGTACGTAACGTGTCCCCTTG 60.000 52.381 0.00 0.00 41.39 3.61
4016 4173 0.602562 TACGTAACGTGTCCCCTTGG 59.397 55.000 0.00 0.00 41.39 3.61
4017 4174 1.114722 ACGTAACGTGTCCCCTTGGA 61.115 55.000 0.00 0.00 39.18 3.53
4018 4175 0.248289 CGTAACGTGTCCCCTTGGAT 59.752 55.000 0.00 0.00 44.28 3.41
4019 4176 1.338389 CGTAACGTGTCCCCTTGGATT 60.338 52.381 0.00 0.00 44.28 3.01
4020 4177 2.786777 GTAACGTGTCCCCTTGGATTT 58.213 47.619 0.00 0.00 44.28 2.17
4021 4178 1.616159 AACGTGTCCCCTTGGATTTG 58.384 50.000 0.00 0.00 44.28 2.32
4022 4179 0.251165 ACGTGTCCCCTTGGATTTGG 60.251 55.000 0.00 0.00 44.28 3.28
4023 4180 0.037590 CGTGTCCCCTTGGATTTGGA 59.962 55.000 0.00 0.00 44.28 3.53
4024 4181 1.340991 CGTGTCCCCTTGGATTTGGAT 60.341 52.381 0.00 0.00 44.28 3.41
4025 4182 2.820178 GTGTCCCCTTGGATTTGGATT 58.180 47.619 0.00 0.00 44.28 3.01
4026 4183 2.497273 GTGTCCCCTTGGATTTGGATTG 59.503 50.000 0.00 0.00 44.28 2.67
4027 4184 2.111613 TGTCCCCTTGGATTTGGATTGT 59.888 45.455 0.00 0.00 44.28 2.71
4028 4185 3.335183 TGTCCCCTTGGATTTGGATTGTA 59.665 43.478 0.00 0.00 44.28 2.41
4029 4186 4.016666 TGTCCCCTTGGATTTGGATTGTAT 60.017 41.667 0.00 0.00 44.28 2.29
4030 4187 4.962362 GTCCCCTTGGATTTGGATTGTATT 59.038 41.667 0.00 0.00 44.28 1.89
4031 4188 5.069119 GTCCCCTTGGATTTGGATTGTATTC 59.931 44.000 0.00 0.00 44.28 1.75
4032 4189 4.344968 CCCCTTGGATTTGGATTGTATTCC 59.655 45.833 0.00 0.00 36.24 3.01
4033 4190 4.344968 CCCTTGGATTTGGATTGTATTCCC 59.655 45.833 0.00 0.00 34.67 3.97
4034 4191 5.211201 CCTTGGATTTGGATTGTATTCCCT 58.789 41.667 0.00 0.00 34.67 4.20
4035 4192 5.302823 CCTTGGATTTGGATTGTATTCCCTC 59.697 44.000 0.00 0.00 34.67 4.30
4036 4193 4.803452 TGGATTTGGATTGTATTCCCTCC 58.197 43.478 0.00 0.00 34.67 4.30
4037 4194 3.821033 GGATTTGGATTGTATTCCCTCCG 59.179 47.826 0.00 0.00 34.67 4.63
4038 4195 4.461198 GATTTGGATTGTATTCCCTCCGT 58.539 43.478 0.00 0.00 34.67 4.69
4039 4196 5.455612 GGATTTGGATTGTATTCCCTCCGTA 60.456 44.000 0.00 0.00 34.67 4.02
4040 4197 5.438698 TTTGGATTGTATTCCCTCCGTAA 57.561 39.130 0.00 0.00 34.67 3.18
4041 4198 5.438698 TTGGATTGTATTCCCTCCGTAAA 57.561 39.130 0.00 0.00 34.67 2.01
4042 4199 4.773013 TGGATTGTATTCCCTCCGTAAAC 58.227 43.478 0.00 0.00 34.67 2.01
4043 4200 4.472108 TGGATTGTATTCCCTCCGTAAACT 59.528 41.667 0.00 0.00 34.67 2.66
4044 4201 5.662208 TGGATTGTATTCCCTCCGTAAACTA 59.338 40.000 0.00 0.00 34.67 2.24
4045 4202 6.156602 TGGATTGTATTCCCTCCGTAAACTAA 59.843 38.462 0.00 0.00 34.67 2.24
4046 4203 7.147444 TGGATTGTATTCCCTCCGTAAACTAAT 60.147 37.037 0.00 0.00 34.67 1.73
4047 4204 8.370182 GGATTGTATTCCCTCCGTAAACTAATA 58.630 37.037 0.00 0.00 0.00 0.98
4048 4205 9.939802 GATTGTATTCCCTCCGTAAACTAATAT 57.060 33.333 0.00 0.00 0.00 1.28
4054 4211 6.752168 TCCCTCCGTAAACTAATATAACAGC 58.248 40.000 0.00 0.00 0.00 4.40
4055 4212 5.632347 CCCTCCGTAAACTAATATAACAGCG 59.368 44.000 0.00 0.00 0.00 5.18
4056 4213 6.211515 CCTCCGTAAACTAATATAACAGCGT 58.788 40.000 0.00 0.00 0.00 5.07
4057 4214 6.698766 CCTCCGTAAACTAATATAACAGCGTT 59.301 38.462 0.02 0.02 0.00 4.84
4058 4215 7.223387 CCTCCGTAAACTAATATAACAGCGTTT 59.777 37.037 0.00 0.00 0.00 3.60
4059 4216 9.236691 CTCCGTAAACTAATATAACAGCGTTTA 57.763 33.333 0.00 0.00 0.00 2.01
4060 4217 9.236691 TCCGTAAACTAATATAACAGCGTTTAG 57.763 33.333 0.00 0.00 30.36 1.85
4061 4218 9.236691 CCGTAAACTAATATAACAGCGTTTAGA 57.763 33.333 0.00 0.00 30.36 2.10
4072 4229 5.470845 ACAGCGTTTAGATCACTTAATGC 57.529 39.130 0.00 0.00 43.54 3.56
4073 4230 4.935205 ACAGCGTTTAGATCACTTAATGCA 59.065 37.500 13.02 0.00 44.75 3.96
4074 4231 5.411361 ACAGCGTTTAGATCACTTAATGCAA 59.589 36.000 13.02 0.00 44.75 4.08
4075 4232 5.961843 CAGCGTTTAGATCACTTAATGCAAG 59.038 40.000 13.02 0.00 44.75 4.01
4076 4233 5.874810 AGCGTTTAGATCACTTAATGCAAGA 59.125 36.000 13.02 0.00 44.75 3.02
4077 4234 6.371548 AGCGTTTAGATCACTTAATGCAAGAA 59.628 34.615 13.02 0.00 44.75 2.52
4078 4235 6.684555 GCGTTTAGATCACTTAATGCAAGAAG 59.315 38.462 8.92 8.92 43.06 2.85
4079 4236 7.624344 GCGTTTAGATCACTTAATGCAAGAAGT 60.624 37.037 10.07 10.07 43.06 3.01
4080 4237 8.869897 CGTTTAGATCACTTAATGCAAGAAGTA 58.130 33.333 14.31 6.18 37.71 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.297527 AGACCACGACGACCTTTTAATTTTT 59.702 36.000 0.00 0.00 0.00 1.94
12 13 4.818005 AGACCACGACGACCTTTTAATTTT 59.182 37.500 0.00 0.00 0.00 1.82
13 14 4.212636 CAGACCACGACGACCTTTTAATTT 59.787 41.667 0.00 0.00 0.00 1.82
14 15 3.744426 CAGACCACGACGACCTTTTAATT 59.256 43.478 0.00 0.00 0.00 1.40
15 16 3.323243 CAGACCACGACGACCTTTTAAT 58.677 45.455 0.00 0.00 0.00 1.40
16 17 2.746269 CAGACCACGACGACCTTTTAA 58.254 47.619 0.00 0.00 0.00 1.52
17 18 1.603678 GCAGACCACGACGACCTTTTA 60.604 52.381 0.00 0.00 0.00 1.52
18 19 0.878961 GCAGACCACGACGACCTTTT 60.879 55.000 0.00 0.00 0.00 2.27
19 20 1.300697 GCAGACCACGACGACCTTT 60.301 57.895 0.00 0.00 0.00 3.11
20 21 2.023414 TTGCAGACCACGACGACCTT 62.023 55.000 0.00 0.00 0.00 3.50
21 22 2.421877 CTTGCAGACCACGACGACCT 62.422 60.000 0.00 0.00 0.00 3.85
22 23 2.022129 CTTGCAGACCACGACGACC 61.022 63.158 0.00 0.00 0.00 4.79
23 24 2.022129 CCTTGCAGACCACGACGAC 61.022 63.158 0.00 0.00 0.00 4.34
24 25 1.740332 TTCCTTGCAGACCACGACGA 61.740 55.000 0.00 0.00 0.00 4.20
25 26 1.284982 CTTCCTTGCAGACCACGACG 61.285 60.000 0.00 0.00 0.00 5.12
74 75 3.444388 GGGTATAGAATAGGCTCTGGTCG 59.556 52.174 0.00 0.00 0.00 4.79
200 215 2.986479 CGCTGCAACGTGAGCATATATA 59.014 45.455 15.22 0.00 41.82 0.86
201 216 1.794701 CGCTGCAACGTGAGCATATAT 59.205 47.619 15.22 0.00 41.82 0.86
202 217 1.208259 CGCTGCAACGTGAGCATATA 58.792 50.000 15.22 0.00 41.82 0.86
203 218 2.009108 CGCTGCAACGTGAGCATAT 58.991 52.632 15.22 0.00 41.82 1.78
239 256 2.178912 TTGTAGCTTTCCCTTCGGTG 57.821 50.000 0.00 0.00 0.00 4.94
240 257 2.158726 TGTTTGTAGCTTTCCCTTCGGT 60.159 45.455 0.00 0.00 0.00 4.69
241 258 2.500229 TGTTTGTAGCTTTCCCTTCGG 58.500 47.619 0.00 0.00 0.00 4.30
242 259 4.693566 TGTATGTTTGTAGCTTTCCCTTCG 59.306 41.667 0.00 0.00 0.00 3.79
270 287 3.428999 GGCGATCAGTGTGTATAGTGTGT 60.429 47.826 0.00 0.00 0.00 3.72
271 288 3.116300 GGCGATCAGTGTGTATAGTGTG 58.884 50.000 0.00 0.00 0.00 3.82
272 289 2.223502 CGGCGATCAGTGTGTATAGTGT 60.224 50.000 0.00 0.00 0.00 3.55
273 290 2.032924 TCGGCGATCAGTGTGTATAGTG 59.967 50.000 4.99 0.00 0.00 2.74
274 291 2.294979 TCGGCGATCAGTGTGTATAGT 58.705 47.619 4.99 0.00 0.00 2.12
275 292 3.237628 CATCGGCGATCAGTGTGTATAG 58.762 50.000 21.25 0.00 0.00 1.31
276 293 2.621526 ACATCGGCGATCAGTGTGTATA 59.378 45.455 21.25 0.00 0.00 1.47
277 294 1.409064 ACATCGGCGATCAGTGTGTAT 59.591 47.619 21.25 0.00 0.00 2.29
278 295 0.815095 ACATCGGCGATCAGTGTGTA 59.185 50.000 21.25 0.00 0.00 2.90
279 296 0.737367 CACATCGGCGATCAGTGTGT 60.737 55.000 25.30 16.96 36.37 3.72
336 353 6.128363 GGGAAAAGTTAGGATAAACACGTCAG 60.128 42.308 0.00 0.00 0.00 3.51
345 362 8.002459 ACTGAAAACAGGGAAAAGTTAGGATAA 58.998 33.333 0.00 0.00 0.00 1.75
348 365 5.762279 ACTGAAAACAGGGAAAAGTTAGGA 58.238 37.500 0.00 0.00 0.00 2.94
361 379 4.442073 GCATGTACAAGCAACTGAAAACAG 59.558 41.667 17.73 0.00 0.00 3.16
373 391 5.574443 GGAAGATCAAAAAGCATGTACAAGC 59.426 40.000 15.07 15.07 0.00 4.01
380 398 5.346822 CCTTTTCGGAAGATCAAAAAGCATG 59.653 40.000 0.00 0.00 41.60 4.06
384 402 5.335976 CCCTCCTTTTCGGAAGATCAAAAAG 60.336 44.000 0.00 3.42 42.53 2.27
388 406 2.618045 GCCCTCCTTTTCGGAAGATCAA 60.618 50.000 0.00 0.00 42.53 2.57
390 408 1.210722 AGCCCTCCTTTTCGGAAGATC 59.789 52.381 1.68 0.00 42.53 2.75
391 409 1.290134 AGCCCTCCTTTTCGGAAGAT 58.710 50.000 1.68 0.00 42.53 2.40
420 438 0.865769 GGCCTTTCACGTACACACAG 59.134 55.000 0.00 0.00 0.00 3.66
429 447 3.190878 GCTGGATGGCCTTTCACG 58.809 61.111 3.32 0.00 34.31 4.35
455 473 1.299620 GCCAATCATGCATCGTGCC 60.300 57.895 0.00 0.00 44.23 5.01
462 480 3.870538 ATAGAAGGAGCCAATCATGCA 57.129 42.857 0.00 0.00 0.00 3.96
473 491 9.213799 GAAAGCATAACCATAGAATAGAAGGAG 57.786 37.037 0.00 0.00 0.00 3.69
506 525 4.851014 TGCGTACGTACATACACTACAAAC 59.149 41.667 24.50 0.00 0.00 2.93
522 541 0.790207 GATGCCCATGTATGCGTACG 59.210 55.000 11.84 11.84 33.36 3.67
528 547 0.445043 CATCGCGATGCCCATGTATG 59.555 55.000 33.70 10.38 31.39 2.39
529 548 0.035317 ACATCGCGATGCCCATGTAT 59.965 50.000 40.92 21.50 42.39 2.29
530 549 0.879839 CACATCGCGATGCCCATGTA 60.880 55.000 40.92 3.90 42.39 2.29
531 550 2.182181 CACATCGCGATGCCCATGT 61.182 57.895 40.92 24.57 42.39 3.21
797 830 0.533951 GCTTGGAATGAGGCAAAGGG 59.466 55.000 0.00 0.00 0.00 3.95
800 833 0.895100 AGCGCTTGGAATGAGGCAAA 60.895 50.000 2.64 0.00 0.00 3.68
922 968 3.078097 TCCGAAGTCTCTGAGAAGTGAG 58.922 50.000 9.31 0.00 0.00 3.51
948 994 2.373335 ATCTCTATCTCACCACGGCT 57.627 50.000 0.00 0.00 0.00 5.52
949 995 3.413327 TCTATCTCTATCTCACCACGGC 58.587 50.000 0.00 0.00 0.00 5.68
950 996 4.900684 TCTCTATCTCTATCTCACCACGG 58.099 47.826 0.00 0.00 0.00 4.94
951 997 7.552459 TCTATCTCTATCTCTATCTCACCACG 58.448 42.308 0.00 0.00 0.00 4.94
953 999 8.909423 TCTCTATCTCTATCTCTATCTCACCA 57.091 38.462 0.00 0.00 0.00 4.17
967 1013 9.883293 CTCCCTCTATCTCTATCTCTATCTCTA 57.117 40.741 0.00 0.00 0.00 2.43
973 1019 7.063801 TCTCCTCCCTCTATCTCTATCTCTA 57.936 44.000 0.00 0.00 0.00 2.43
979 1025 4.511963 TCCTCTCCTCCCTCTATCTCTA 57.488 50.000 0.00 0.00 0.00 2.43
990 1061 1.152139 CCTCCCCATCCTCTCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
1091 1162 2.100603 CGTTCTCCTCGTCCTCGC 59.899 66.667 0.00 0.00 36.96 5.03
1188 1259 1.005215 ACCTTTGGCTCCAGATGGAAG 59.995 52.381 2.65 0.00 44.91 3.46
1305 1401 1.915769 GGACACCCTCAGCTCCACT 60.916 63.158 0.00 0.00 0.00 4.00
1383 1479 4.388378 AGGTTCAGTTACTATTCGCCTC 57.612 45.455 0.00 0.00 0.00 4.70
1385 1481 6.973229 TTAAAGGTTCAGTTACTATTCGCC 57.027 37.500 0.00 0.00 0.00 5.54
1392 1488 6.464530 AGGGGATTTAAAGGTTCAGTTACT 57.535 37.500 0.00 0.00 0.00 2.24
1393 1489 7.534723 AAAGGGGATTTAAAGGTTCAGTTAC 57.465 36.000 0.00 0.00 0.00 2.50
1394 1490 7.040271 CGAAAAGGGGATTTAAAGGTTCAGTTA 60.040 37.037 0.00 0.00 0.00 2.24
1414 1510 0.593128 CTCAACACTGCCCCGAAAAG 59.407 55.000 0.00 0.00 0.00 2.27
1453 1549 3.944422 TTGTATGCTTTTAGCGCTAGC 57.056 42.857 21.13 21.13 46.26 3.42
1454 1550 5.657470 TGATTGTATGCTTTTAGCGCTAG 57.343 39.130 17.98 9.41 46.26 3.42
1558 1659 5.277154 GCGAATAATTAGCAAAGCTTACGGA 60.277 40.000 0.00 0.00 40.44 4.69
1610 1713 7.094205 GCAGTGAGATAATCAAGGAAGGAAAAA 60.094 37.037 0.00 0.00 40.43 1.94
1611 1714 6.375455 GCAGTGAGATAATCAAGGAAGGAAAA 59.625 38.462 0.00 0.00 40.43 2.29
1612 1715 5.882557 GCAGTGAGATAATCAAGGAAGGAAA 59.117 40.000 0.00 0.00 40.43 3.13
1613 1716 5.045651 TGCAGTGAGATAATCAAGGAAGGAA 60.046 40.000 0.00 0.00 40.43 3.36
1614 1717 4.471025 TGCAGTGAGATAATCAAGGAAGGA 59.529 41.667 0.00 0.00 40.43 3.36
1615 1718 4.774124 TGCAGTGAGATAATCAAGGAAGG 58.226 43.478 0.00 0.00 40.43 3.46
1616 1719 6.939132 ATTGCAGTGAGATAATCAAGGAAG 57.061 37.500 0.00 0.00 40.43 3.46
1694 1797 5.278808 GGTGGTGTTGAAAGGGAAGATAAAC 60.279 44.000 0.00 0.00 0.00 2.01
1698 1801 2.447047 AGGTGGTGTTGAAAGGGAAGAT 59.553 45.455 0.00 0.00 0.00 2.40
1713 1816 2.727123 TCAACACATTGACAGGTGGT 57.273 45.000 12.29 4.58 40.01 4.16
1722 1825 6.852853 GCTATGTCCGAATTATCAACACATTG 59.147 38.462 0.00 0.00 37.14 2.82
1723 1826 6.017109 GGCTATGTCCGAATTATCAACACATT 60.017 38.462 0.00 0.00 0.00 2.71
1739 1842 1.755179 ATGCACACTTGGCTATGTCC 58.245 50.000 0.00 0.00 0.00 4.02
1794 1897 4.811557 ACTAATAAGAAATGGACGCTCTGC 59.188 41.667 0.00 0.00 0.00 4.26
1795 1898 5.235186 CCACTAATAAGAAATGGACGCTCTG 59.765 44.000 0.00 0.00 31.69 3.35
1825 1928 5.594725 TCGAGATCCTGGATATACTAATGCC 59.405 44.000 9.66 0.00 0.00 4.40
1964 2088 0.108804 CTGCTGCAAATGCTTCTGGG 60.109 55.000 3.02 0.00 42.66 4.45
1978 2102 1.211818 GCCGCGACTTATCTCTGCTG 61.212 60.000 8.23 0.00 0.00 4.41
2009 2133 4.952335 CAGGGCATACATTTTTCTCTTCCT 59.048 41.667 0.00 0.00 0.00 3.36
2084 2208 4.464069 TGGGGTTTTCTTTCACTTGTTG 57.536 40.909 0.00 0.00 0.00 3.33
2091 2217 7.563556 AGAGTAGAAATTTGGGGTTTTCTTTCA 59.436 33.333 0.00 0.00 41.26 2.69
2095 2221 5.243954 GCAGAGTAGAAATTTGGGGTTTTCT 59.756 40.000 0.00 3.69 42.96 2.52
2096 2222 5.243954 AGCAGAGTAGAAATTTGGGGTTTTC 59.756 40.000 0.00 0.00 33.08 2.29
2113 2239 2.980475 GGCAGAGCAGAGCAGAGT 59.020 61.111 0.00 0.00 0.00 3.24
2142 2268 1.449601 ACTGTTCGCCATTAGCCCG 60.450 57.895 0.00 0.00 38.78 6.13
2175 2301 1.821332 CTTTCCGGAGCTCATGGCC 60.821 63.158 17.19 0.00 43.05 5.36
2208 2334 1.425412 CCACAACAGTACTGGCGTAC 58.575 55.000 26.12 10.34 45.04 3.67
2209 2335 0.320073 GCCACAACAGTACTGGCGTA 60.320 55.000 26.12 0.00 41.15 4.42
2210 2336 1.597027 GCCACAACAGTACTGGCGT 60.597 57.895 26.12 18.76 41.15 5.68
2211 2337 3.253955 GCCACAACAGTACTGGCG 58.746 61.111 26.12 18.14 41.15 5.69
2213 2339 1.896220 ACATGCCACAACAGTACTGG 58.104 50.000 26.12 12.24 34.19 4.00
2214 2340 3.120683 CGTAACATGCCACAACAGTACTG 60.121 47.826 21.44 21.44 0.00 2.74
2215 2341 3.064207 CGTAACATGCCACAACAGTACT 58.936 45.455 0.00 0.00 0.00 2.73
2216 2342 2.158841 CCGTAACATGCCACAACAGTAC 59.841 50.000 0.00 0.00 0.00 2.73
2298 2424 4.760047 CACAGGGCCGAACGGAGG 62.760 72.222 17.63 5.09 37.50 4.30
2309 2435 3.052082 CAACTCAGGCGCACAGGG 61.052 66.667 10.83 0.00 0.00 4.45
2361 2503 2.976903 GAGCCCGATCCATGCTGC 60.977 66.667 3.26 0.00 34.99 5.25
2362 2504 2.281345 GGAGCCCGATCCATGCTG 60.281 66.667 3.26 0.00 39.34 4.41
2363 2505 2.049627 GAAGGAGCCCGATCCATGCT 62.050 60.000 1.22 0.00 42.26 3.79
2521 2663 4.648307 ACGGAGGTAGTACCAAATCTTAGG 59.352 45.833 21.49 4.81 41.95 2.69
2523 2665 4.646492 GGACGGAGGTAGTACCAAATCTTA 59.354 45.833 21.49 0.00 41.95 2.10
2543 2685 3.311596 GCAAATGACTTATACACCGGGAC 59.688 47.826 6.32 0.00 0.00 4.46
2544 2686 3.537580 GCAAATGACTTATACACCGGGA 58.462 45.455 6.32 0.00 0.00 5.14
2545 2687 2.286833 CGCAAATGACTTATACACCGGG 59.713 50.000 6.32 0.00 0.00 5.73
2546 2688 2.933906 ACGCAAATGACTTATACACCGG 59.066 45.455 0.00 0.00 0.00 5.28
2547 2689 4.802039 ACTACGCAAATGACTTATACACCG 59.198 41.667 0.00 0.00 0.00 4.94
2548 2690 6.657836 AACTACGCAAATGACTTATACACC 57.342 37.500 0.00 0.00 0.00 4.16
2549 2691 9.685005 CTAAAACTACGCAAATGACTTATACAC 57.315 33.333 0.00 0.00 0.00 2.90
2550 2692 8.875803 CCTAAAACTACGCAAATGACTTATACA 58.124 33.333 0.00 0.00 0.00 2.29
2551 2693 8.876790 ACCTAAAACTACGCAAATGACTTATAC 58.123 33.333 0.00 0.00 0.00 1.47
2552 2694 9.090692 GACCTAAAACTACGCAAATGACTTATA 57.909 33.333 0.00 0.00 0.00 0.98
2553 2695 7.201496 CGACCTAAAACTACGCAAATGACTTAT 60.201 37.037 0.00 0.00 0.00 1.73
2554 2696 6.089820 CGACCTAAAACTACGCAAATGACTTA 59.910 38.462 0.00 0.00 0.00 2.24
2555 2697 5.107220 CGACCTAAAACTACGCAAATGACTT 60.107 40.000 0.00 0.00 0.00 3.01
2556 2698 4.387862 CGACCTAAAACTACGCAAATGACT 59.612 41.667 0.00 0.00 0.00 3.41
2557 2699 4.386652 TCGACCTAAAACTACGCAAATGAC 59.613 41.667 0.00 0.00 0.00 3.06
2558 2700 4.386652 GTCGACCTAAAACTACGCAAATGA 59.613 41.667 3.51 0.00 0.00 2.57
2559 2701 4.150980 TGTCGACCTAAAACTACGCAAATG 59.849 41.667 14.12 0.00 0.00 2.32
2560 2702 4.309099 TGTCGACCTAAAACTACGCAAAT 58.691 39.130 14.12 0.00 0.00 2.32
2561 2703 3.715495 TGTCGACCTAAAACTACGCAAA 58.285 40.909 14.12 0.00 0.00 3.68
2562 2704 3.367992 TGTCGACCTAAAACTACGCAA 57.632 42.857 14.12 0.00 0.00 4.85
2563 2705 3.367992 TTGTCGACCTAAAACTACGCA 57.632 42.857 14.12 0.00 0.00 5.24
2564 2706 4.916099 AATTGTCGACCTAAAACTACGC 57.084 40.909 14.12 0.00 0.00 4.42
2565 2707 8.011067 AGTTAAATTGTCGACCTAAAACTACG 57.989 34.615 14.12 0.00 0.00 3.51
2568 2710 9.939802 AGATAGTTAAATTGTCGACCTAAAACT 57.060 29.630 14.12 16.81 0.00 2.66
2681 2823 9.594038 CCGTCGATTTAAGGAATTAAATATGTG 57.406 33.333 6.08 0.00 37.27 3.21
2682 2824 8.287503 GCCGTCGATTTAAGGAATTAAATATGT 58.712 33.333 6.08 0.00 37.27 2.29
2683 2825 7.749126 GGCCGTCGATTTAAGGAATTAAATATG 59.251 37.037 6.08 3.58 37.27 1.78
2684 2826 7.664318 AGGCCGTCGATTTAAGGAATTAAATAT 59.336 33.333 0.00 0.00 37.27 1.28
2685 2827 6.993902 AGGCCGTCGATTTAAGGAATTAAATA 59.006 34.615 0.00 0.00 37.27 1.40
2686 2828 5.826208 AGGCCGTCGATTTAAGGAATTAAAT 59.174 36.000 0.00 5.83 39.16 1.40
2687 2829 5.187687 AGGCCGTCGATTTAAGGAATTAAA 58.812 37.500 0.00 0.00 0.00 1.52
2688 2830 4.773013 AGGCCGTCGATTTAAGGAATTAA 58.227 39.130 0.00 0.00 0.00 1.40
2689 2831 4.411256 AGGCCGTCGATTTAAGGAATTA 57.589 40.909 0.00 0.00 0.00 1.40
2690 2832 3.277142 AGGCCGTCGATTTAAGGAATT 57.723 42.857 0.00 0.00 0.00 2.17
2691 2833 3.640029 TCTAGGCCGTCGATTTAAGGAAT 59.360 43.478 0.00 0.00 0.00 3.01
2692 2834 3.025978 TCTAGGCCGTCGATTTAAGGAA 58.974 45.455 0.00 0.00 0.00 3.36
2693 2835 2.360165 GTCTAGGCCGTCGATTTAAGGA 59.640 50.000 0.00 0.00 0.00 3.36
2694 2836 2.361438 AGTCTAGGCCGTCGATTTAAGG 59.639 50.000 0.00 0.00 0.00 2.69
2695 2837 3.712091 AGTCTAGGCCGTCGATTTAAG 57.288 47.619 0.00 0.00 0.00 1.85
2696 2838 3.002656 CGTAGTCTAGGCCGTCGATTTAA 59.997 47.826 0.00 0.00 0.00 1.52
2697 2839 2.545526 CGTAGTCTAGGCCGTCGATTTA 59.454 50.000 0.00 0.00 0.00 1.40
2698 2840 1.332997 CGTAGTCTAGGCCGTCGATTT 59.667 52.381 0.00 0.00 0.00 2.17
2699 2841 0.942962 CGTAGTCTAGGCCGTCGATT 59.057 55.000 0.00 0.00 0.00 3.34
2700 2842 1.505477 GCGTAGTCTAGGCCGTCGAT 61.505 60.000 12.62 0.00 33.72 3.59
2701 2843 2.176273 GCGTAGTCTAGGCCGTCGA 61.176 63.158 12.62 0.00 33.72 4.20
2702 2844 2.327244 GCGTAGTCTAGGCCGTCG 59.673 66.667 12.62 0.00 33.72 5.12
2703 2845 1.709147 TTCGCGTAGTCTAGGCCGTC 61.709 60.000 16.80 0.00 36.28 4.79
2704 2846 1.099879 ATTCGCGTAGTCTAGGCCGT 61.100 55.000 16.80 2.90 36.28 5.68
2705 2847 0.660595 CATTCGCGTAGTCTAGGCCG 60.661 60.000 16.80 12.47 36.28 6.13
2706 2848 0.666913 TCATTCGCGTAGTCTAGGCC 59.333 55.000 16.80 0.00 36.28 5.19
2707 2849 1.334243 AGTCATTCGCGTAGTCTAGGC 59.666 52.381 13.46 13.46 36.30 3.93
2708 2850 3.694535 AAGTCATTCGCGTAGTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
2709 2851 6.791299 GTGTATAAGTCATTCGCGTAGTCTAG 59.209 42.308 5.77 0.00 0.00 2.43
2710 2852 6.293081 GGTGTATAAGTCATTCGCGTAGTCTA 60.293 42.308 5.77 0.00 0.00 2.59
2711 2853 5.505324 GGTGTATAAGTCATTCGCGTAGTCT 60.505 44.000 5.77 0.00 0.00 3.24
2712 2854 4.674211 GGTGTATAAGTCATTCGCGTAGTC 59.326 45.833 5.77 0.00 0.00 2.59
2713 2855 4.604976 GGTGTATAAGTCATTCGCGTAGT 58.395 43.478 5.77 0.00 0.00 2.73
2714 2856 3.662645 CGGTGTATAAGTCATTCGCGTAG 59.337 47.826 5.77 0.00 0.00 3.51
2715 2857 3.312146 TCGGTGTATAAGTCATTCGCGTA 59.688 43.478 5.77 0.00 0.00 4.42
2716 2858 2.097954 TCGGTGTATAAGTCATTCGCGT 59.902 45.455 5.77 0.00 0.00 6.01
2717 2859 2.719556 CTCGGTGTATAAGTCATTCGCG 59.280 50.000 0.00 0.00 0.00 5.87
2718 2860 3.729716 GTCTCGGTGTATAAGTCATTCGC 59.270 47.826 0.00 0.00 0.00 4.70
2719 2861 3.966844 CGTCTCGGTGTATAAGTCATTCG 59.033 47.826 0.00 0.00 0.00 3.34
2720 2862 4.288531 CCGTCTCGGTGTATAAGTCATTC 58.711 47.826 0.00 0.00 42.73 2.67
2721 2863 4.303086 CCGTCTCGGTGTATAAGTCATT 57.697 45.455 0.00 0.00 42.73 2.57
2722 2864 3.984508 CCGTCTCGGTGTATAAGTCAT 57.015 47.619 0.00 0.00 42.73 3.06
2728 2870 7.947650 GTAGTACTACTTCCGTCTCGGTGTATA 60.948 44.444 23.17 5.65 39.30 1.47
2729 2871 7.177396 GTAGTACTACTTCCGTCTCGGTGTAT 61.177 46.154 23.17 6.33 39.30 2.29
2730 2872 5.907586 GTAGTACTACTTCCGTCTCGGTGTA 60.908 48.000 23.17 10.83 39.30 2.90
2731 2873 5.153398 GTAGTACTACTTCCGTCTCGGTGT 61.153 50.000 23.17 10.34 39.30 4.16
2732 2874 3.308323 GTAGTACTACTTCCGTCTCGGTG 59.692 52.174 23.17 5.49 39.30 4.94
2733 2875 3.196685 AGTAGTACTACTTCCGTCTCGGT 59.803 47.826 26.61 3.74 43.35 4.69
2734 2876 3.555139 CAGTAGTACTACTTCCGTCTCGG 59.445 52.174 29.08 13.35 45.32 4.63
2735 2877 3.001127 GCAGTAGTACTACTTCCGTCTCG 59.999 52.174 29.08 17.57 43.35 4.04
2736 2878 4.190772 AGCAGTAGTACTACTTCCGTCTC 58.809 47.826 29.08 13.76 43.35 3.36
2737 2879 4.219264 AGCAGTAGTACTACTTCCGTCT 57.781 45.455 29.08 18.19 43.35 4.18
2738 2880 5.006552 CAGTAGCAGTAGTACTACTTCCGTC 59.993 48.000 29.08 17.74 45.25 4.79
2739 2881 4.874966 CAGTAGCAGTAGTACTACTTCCGT 59.125 45.833 29.08 17.14 45.25 4.69
2740 2882 4.260702 GCAGTAGCAGTAGTACTACTTCCG 60.261 50.000 29.08 20.08 45.25 4.30
2741 2883 4.883006 AGCAGTAGCAGTAGTACTACTTCC 59.117 45.833 29.08 22.34 45.25 3.46
2742 2884 5.731126 GCAGCAGTAGCAGTAGTACTACTTC 60.731 48.000 29.08 24.87 45.25 3.01
2743 2885 4.096682 GCAGCAGTAGCAGTAGTACTACTT 59.903 45.833 29.08 19.65 45.25 2.24
2745 2887 3.243134 GGCAGCAGTAGCAGTAGTACTAC 60.243 52.174 23.03 23.03 45.49 2.73
2746 2888 2.950309 GGCAGCAGTAGCAGTAGTACTA 59.050 50.000 1.57 0.00 45.49 1.82
2747 2889 1.751924 GGCAGCAGTAGCAGTAGTACT 59.248 52.381 0.00 0.00 45.49 2.73
2748 2890 1.534175 CGGCAGCAGTAGCAGTAGTAC 60.534 57.143 0.00 0.00 45.49 2.73
2749 2891 0.738975 CGGCAGCAGTAGCAGTAGTA 59.261 55.000 0.00 0.00 45.49 1.82
2750 2892 1.513158 CGGCAGCAGTAGCAGTAGT 59.487 57.895 0.00 0.00 45.49 2.73
2751 2893 1.880340 GCGGCAGCAGTAGCAGTAG 60.880 63.158 3.18 0.00 45.49 2.57
2752 2894 2.184322 GCGGCAGCAGTAGCAGTA 59.816 61.111 3.18 0.00 45.49 2.74
2757 2899 2.683820 TATGAGCGCGGCAGCAGTAG 62.684 60.000 8.83 0.00 45.49 2.57
2758 2900 2.291457 TTATGAGCGCGGCAGCAGTA 62.291 55.000 8.83 5.31 45.49 2.74
2759 2901 2.930385 ATTATGAGCGCGGCAGCAGT 62.930 55.000 8.83 0.00 45.49 4.40
2810 2952 1.875813 GACGCAGATGCTCCGACAG 60.876 63.158 2.95 0.00 39.32 3.51
2855 2997 9.907576 CTCTGACTCGTAAATCAACATATTTTC 57.092 33.333 0.00 0.00 31.63 2.29
2878 3020 1.301423 GATCGCTCGTCCAGTACTCT 58.699 55.000 0.00 0.00 0.00 3.24
2883 3028 2.386661 AAAATGATCGCTCGTCCAGT 57.613 45.000 0.00 0.00 0.00 4.00
2912 3058 2.874701 CCTGGACACACAAGAACAGAAG 59.125 50.000 0.00 0.00 0.00 2.85
3064 3210 1.604947 CGTCTATCTACTCGGAGCCGA 60.605 57.143 11.55 11.55 46.87 5.54
3181 3330 4.047059 ATGCTTGCGTGTGCTGCC 62.047 61.111 0.00 0.00 43.34 4.85
3195 3344 4.427312 CAATAGTTTCTTCCTTGCCATGC 58.573 43.478 0.00 0.00 0.00 4.06
3237 3386 5.070313 CCCAAACCATCCTCTTTTTCTTTGA 59.930 40.000 0.00 0.00 0.00 2.69
3241 3390 4.140924 AGACCCAAACCATCCTCTTTTTCT 60.141 41.667 0.00 0.00 0.00 2.52
3245 3394 5.536497 ATTAGACCCAAACCATCCTCTTT 57.464 39.130 0.00 0.00 0.00 2.52
3252 3401 7.128077 AGATCAATCAATTAGACCCAAACCAT 58.872 34.615 0.00 0.00 0.00 3.55
3256 3405 8.548025 TGAGTAGATCAATCAATTAGACCCAAA 58.452 33.333 0.00 0.00 34.02 3.28
3290 3439 4.837860 TGTATGGATGGGCTGTTTTTCTTT 59.162 37.500 0.00 0.00 0.00 2.52
3293 3443 4.685924 CATGTATGGATGGGCTGTTTTTC 58.314 43.478 0.00 0.00 0.00 2.29
3390 3546 4.944048 TCTTCTCAGTTTTGTCATGTCGA 58.056 39.130 0.00 0.00 0.00 4.20
3408 3564 8.497554 CAAGCTCAGAGATATTTTGCTATCTTC 58.502 37.037 0.00 0.00 38.33 2.87
3418 3574 5.426689 TGGTGTCAAGCTCAGAGATATTT 57.573 39.130 0.00 0.00 0.00 1.40
3421 3577 3.367395 CGTTGGTGTCAAGCTCAGAGATA 60.367 47.826 0.00 0.00 32.92 1.98
3439 3595 0.606401 AAGACAGGTGATGGGCGTTG 60.606 55.000 0.00 0.00 0.00 4.10
3455 3611 1.525077 GTTGTGGTGGTGCCGAAGA 60.525 57.895 0.00 0.00 41.21 2.87
3458 3614 2.203139 CTGTTGTGGTGGTGCCGA 60.203 61.111 0.00 0.00 41.21 5.54
3518 3675 0.604073 TTAACGATGGAGCCACGTCA 59.396 50.000 14.28 1.86 39.31 4.35
3523 3680 2.423185 CTGCATTTTAACGATGGAGCCA 59.577 45.455 6.60 0.00 36.41 4.75
3574 3731 0.040067 CAACGGCAAAGGCTTCACTC 60.040 55.000 0.00 0.00 40.87 3.51
3584 3741 2.034053 GTCTGATTGGTTCAACGGCAAA 59.966 45.455 0.00 0.00 32.78 3.68
3597 3754 1.156736 GTGTTGTCCCGGTCTGATTG 58.843 55.000 0.00 0.00 0.00 2.67
3610 3767 2.279918 GCGTGTCCGGAGTGTTGT 60.280 61.111 3.06 0.00 33.68 3.32
3628 3785 3.265791 GTGCCAGATCTGAAGTTCGATT 58.734 45.455 24.62 0.00 0.00 3.34
3750 3907 1.123077 AGGAGCGGATGCAGATTGTA 58.877 50.000 0.00 0.00 46.23 2.41
3784 3941 1.977009 TCCAGCGTCGATGTGGAGT 60.977 57.895 18.96 0.00 35.36 3.85
3791 3948 0.524862 ACGTTTACTCCAGCGTCGAT 59.475 50.000 0.00 0.00 31.54 3.59
3792 3949 0.110056 GACGTTTACTCCAGCGTCGA 60.110 55.000 0.00 0.00 42.91 4.20
3821 3978 0.320374 TCTGTGTCATCGGGTTCCAC 59.680 55.000 0.00 0.00 0.00 4.02
3832 3989 0.603065 CTCGTGGTGGATCTGTGTCA 59.397 55.000 0.00 0.00 0.00 3.58
3840 3997 2.481969 CGACATCATTCTCGTGGTGGAT 60.482 50.000 0.00 0.00 34.50 3.41
3882 4039 7.453752 TGGTTTTTACTCTCATGTAGTCTAGGT 59.546 37.037 6.73 0.00 0.00 3.08
3883 4040 7.837863 TGGTTTTTACTCTCATGTAGTCTAGG 58.162 38.462 6.73 0.00 0.00 3.02
3884 4041 9.522804 GATGGTTTTTACTCTCATGTAGTCTAG 57.477 37.037 6.73 0.00 0.00 2.43
3885 4042 8.475639 GGATGGTTTTTACTCTCATGTAGTCTA 58.524 37.037 6.73 0.00 0.00 2.59
3886 4043 7.038302 TGGATGGTTTTTACTCTCATGTAGTCT 60.038 37.037 6.73 0.00 0.00 3.24
3887 4044 7.064728 GTGGATGGTTTTTACTCTCATGTAGTC 59.935 40.741 6.73 0.00 0.00 2.59
3888 4045 6.879458 GTGGATGGTTTTTACTCTCATGTAGT 59.121 38.462 8.24 8.24 0.00 2.73
3889 4046 6.036083 CGTGGATGGTTTTTACTCTCATGTAG 59.964 42.308 0.00 0.00 0.00 2.74
3890 4047 5.872617 CGTGGATGGTTTTTACTCTCATGTA 59.127 40.000 0.00 0.00 0.00 2.29
3891 4048 4.695455 CGTGGATGGTTTTTACTCTCATGT 59.305 41.667 0.00 0.00 0.00 3.21
3892 4049 4.695455 ACGTGGATGGTTTTTACTCTCATG 59.305 41.667 0.00 0.00 0.00 3.07
3893 4050 4.695455 CACGTGGATGGTTTTTACTCTCAT 59.305 41.667 7.95 0.00 0.00 2.90
3894 4051 4.062293 CACGTGGATGGTTTTTACTCTCA 58.938 43.478 7.95 0.00 0.00 3.27
3895 4052 3.120304 GCACGTGGATGGTTTTTACTCTC 60.120 47.826 18.88 0.00 0.00 3.20
3896 4053 2.812011 GCACGTGGATGGTTTTTACTCT 59.188 45.455 18.88 0.00 0.00 3.24
3897 4054 2.550606 TGCACGTGGATGGTTTTTACTC 59.449 45.455 18.88 0.00 0.00 2.59
3898 4055 2.292292 GTGCACGTGGATGGTTTTTACT 59.708 45.455 18.88 0.00 0.00 2.24
3899 4056 2.606065 GGTGCACGTGGATGGTTTTTAC 60.606 50.000 18.88 0.00 0.00 2.01
3900 4057 1.609555 GGTGCACGTGGATGGTTTTTA 59.390 47.619 18.88 0.00 0.00 1.52
3901 4058 0.387565 GGTGCACGTGGATGGTTTTT 59.612 50.000 18.88 0.00 0.00 1.94
3902 4059 0.753479 TGGTGCACGTGGATGGTTTT 60.753 50.000 18.88 0.00 0.00 2.43
3903 4060 0.539438 ATGGTGCACGTGGATGGTTT 60.539 50.000 18.88 0.00 0.00 3.27
3904 4061 1.074775 ATGGTGCACGTGGATGGTT 59.925 52.632 18.88 0.00 0.00 3.67
3905 4062 1.675310 CATGGTGCACGTGGATGGT 60.675 57.895 18.88 1.25 32.27 3.55
3906 4063 3.055080 GCATGGTGCACGTGGATGG 62.055 63.158 18.88 6.76 44.26 3.51
3907 4064 2.486504 GCATGGTGCACGTGGATG 59.513 61.111 18.88 11.25 44.26 3.51
3916 4073 0.179163 GAACCGCTAAAGCATGGTGC 60.179 55.000 0.00 0.00 45.46 5.01
3917 4074 1.131126 CAGAACCGCTAAAGCATGGTG 59.869 52.381 0.00 0.00 42.21 4.17
3918 4075 1.271379 ACAGAACCGCTAAAGCATGGT 60.271 47.619 2.44 0.00 42.21 3.55
3919 4076 1.453155 ACAGAACCGCTAAAGCATGG 58.547 50.000 2.44 0.00 42.21 3.66
3920 4077 3.559238 AAACAGAACCGCTAAAGCATG 57.441 42.857 2.44 0.00 42.21 4.06
3921 4078 3.305335 CCAAAACAGAACCGCTAAAGCAT 60.305 43.478 2.44 0.00 42.21 3.79
3922 4079 2.034053 CCAAAACAGAACCGCTAAAGCA 59.966 45.455 2.44 0.00 42.21 3.91
3923 4080 2.292292 TCCAAAACAGAACCGCTAAAGC 59.708 45.455 0.00 0.00 37.78 3.51
3924 4081 3.304458 GGTCCAAAACAGAACCGCTAAAG 60.304 47.826 0.00 0.00 0.00 1.85
3925 4082 2.619646 GGTCCAAAACAGAACCGCTAAA 59.380 45.455 0.00 0.00 0.00 1.85
3926 4083 2.223745 GGTCCAAAACAGAACCGCTAA 58.776 47.619 0.00 0.00 0.00 3.09
3927 4084 1.141254 TGGTCCAAAACAGAACCGCTA 59.859 47.619 0.00 0.00 34.39 4.26
3928 4085 0.106918 TGGTCCAAAACAGAACCGCT 60.107 50.000 0.00 0.00 34.39 5.52
3929 4086 0.958822 ATGGTCCAAAACAGAACCGC 59.041 50.000 0.00 0.00 34.39 5.68
3930 4087 3.364565 CGTAATGGTCCAAAACAGAACCG 60.365 47.826 0.00 0.00 34.39 4.44
3931 4088 3.566742 ACGTAATGGTCCAAAACAGAACC 59.433 43.478 0.00 0.00 0.00 3.62
3932 4089 4.823790 ACGTAATGGTCCAAAACAGAAC 57.176 40.909 0.00 0.00 0.00 3.01
3933 4090 5.998981 ACATACGTAATGGTCCAAAACAGAA 59.001 36.000 0.00 0.00 40.16 3.02
3934 4091 5.553123 ACATACGTAATGGTCCAAAACAGA 58.447 37.500 0.00 0.00 40.16 3.41
3935 4092 5.873179 ACATACGTAATGGTCCAAAACAG 57.127 39.130 0.00 0.00 40.16 3.16
3936 4093 6.316640 CCATACATACGTAATGGTCCAAAACA 59.683 38.462 14.23 0.00 40.16 2.83
3937 4094 6.238538 CCCATACATACGTAATGGTCCAAAAC 60.239 42.308 18.88 0.00 40.16 2.43
3938 4095 5.823570 CCCATACATACGTAATGGTCCAAAA 59.176 40.000 18.88 0.00 40.16 2.44
3939 4096 5.104444 ACCCATACATACGTAATGGTCCAAA 60.104 40.000 18.88 0.00 40.16 3.28
3940 4097 4.409574 ACCCATACATACGTAATGGTCCAA 59.590 41.667 18.88 0.00 40.16 3.53
3941 4098 3.968649 ACCCATACATACGTAATGGTCCA 59.031 43.478 18.88 0.00 40.16 4.02
3942 4099 4.312443 CACCCATACATACGTAATGGTCC 58.688 47.826 18.88 0.00 40.16 4.46
3943 4100 4.202284 ACCACCCATACATACGTAATGGTC 60.202 45.833 18.88 0.00 40.16 4.02
3944 4101 3.712733 ACCACCCATACATACGTAATGGT 59.287 43.478 18.88 11.83 40.16 3.55
3945 4102 4.062293 CACCACCCATACATACGTAATGG 58.938 47.826 15.16 15.16 40.16 3.16
3946 4103 4.699637 ACACCACCCATACATACGTAATG 58.300 43.478 0.00 0.00 41.74 1.90
3947 4104 5.362105 AACACCACCCATACATACGTAAT 57.638 39.130 0.00 0.00 0.00 1.89
3948 4105 4.822685 AACACCACCCATACATACGTAA 57.177 40.909 0.00 0.00 0.00 3.18
3949 4106 4.822685 AAACACCACCCATACATACGTA 57.177 40.909 0.00 0.00 0.00 3.57
3950 4107 3.706600 AAACACCACCCATACATACGT 57.293 42.857 0.00 0.00 0.00 3.57
3971 4128 7.665559 ACAAGAGATGCCTACTGATGTTAAAAA 59.334 33.333 0.00 0.00 0.00 1.94
3972 4129 7.168219 ACAAGAGATGCCTACTGATGTTAAAA 58.832 34.615 0.00 0.00 0.00 1.52
3973 4130 6.711277 ACAAGAGATGCCTACTGATGTTAAA 58.289 36.000 0.00 0.00 0.00 1.52
3974 4131 6.299805 ACAAGAGATGCCTACTGATGTTAA 57.700 37.500 0.00 0.00 0.00 2.01
3975 4132 5.939764 ACAAGAGATGCCTACTGATGTTA 57.060 39.130 0.00 0.00 0.00 2.41
3976 4133 4.833478 ACAAGAGATGCCTACTGATGTT 57.167 40.909 0.00 0.00 0.00 2.71
3977 4134 4.202060 CGTACAAGAGATGCCTACTGATGT 60.202 45.833 0.00 0.00 0.00 3.06
3978 4135 4.202060 ACGTACAAGAGATGCCTACTGATG 60.202 45.833 0.00 0.00 0.00 3.07
3979 4136 3.954904 ACGTACAAGAGATGCCTACTGAT 59.045 43.478 0.00 0.00 0.00 2.90
3980 4137 3.353557 ACGTACAAGAGATGCCTACTGA 58.646 45.455 0.00 0.00 0.00 3.41
3981 4138 3.784701 ACGTACAAGAGATGCCTACTG 57.215 47.619 0.00 0.00 0.00 2.74
3982 4139 4.201891 CGTTACGTACAAGAGATGCCTACT 60.202 45.833 0.00 0.00 0.00 2.57
3983 4140 4.033684 CGTTACGTACAAGAGATGCCTAC 58.966 47.826 0.00 0.00 0.00 3.18
3984 4141 3.691118 ACGTTACGTACAAGAGATGCCTA 59.309 43.478 9.22 0.00 38.73 3.93
3985 4142 2.490903 ACGTTACGTACAAGAGATGCCT 59.509 45.455 9.22 0.00 38.73 4.75
3986 4143 2.597305 CACGTTACGTACAAGAGATGCC 59.403 50.000 10.89 0.00 38.32 4.40
3987 4144 3.240069 ACACGTTACGTACAAGAGATGC 58.760 45.455 10.89 0.00 38.32 3.91
3988 4145 3.850273 GGACACGTTACGTACAAGAGATG 59.150 47.826 10.89 0.00 38.32 2.90
3989 4146 3.119708 GGGACACGTTACGTACAAGAGAT 60.120 47.826 10.89 0.00 38.32 2.75
3990 4147 2.226437 GGGACACGTTACGTACAAGAGA 59.774 50.000 10.89 0.00 38.32 3.10
3991 4148 2.589014 GGGACACGTTACGTACAAGAG 58.411 52.381 10.89 0.00 38.32 2.85
3992 4149 1.269448 GGGGACACGTTACGTACAAGA 59.731 52.381 10.89 0.00 38.32 3.02
3993 4150 1.270550 AGGGGACACGTTACGTACAAG 59.729 52.381 10.89 0.13 38.32 3.16
3994 4151 1.327303 AGGGGACACGTTACGTACAA 58.673 50.000 10.89 0.00 38.32 2.41
3995 4152 1.000385 CAAGGGGACACGTTACGTACA 60.000 52.381 10.89 0.00 38.32 2.90
3996 4153 1.669795 CCAAGGGGACACGTTACGTAC 60.670 57.143 10.89 7.86 35.30 3.67
3997 4154 0.602562 CCAAGGGGACACGTTACGTA 59.397 55.000 10.89 0.00 35.30 3.57
3998 4155 1.114722 TCCAAGGGGACACGTTACGT 61.115 55.000 3.95 3.95 38.49 3.57
3999 4156 1.667151 TCCAAGGGGACACGTTACG 59.333 57.895 2.19 2.19 38.64 3.18
4007 4164 7.866862 GGAATACAATCCAAATCCAAGGGGAC 61.867 46.154 0.00 0.00 41.94 4.46
4008 4165 5.872243 GGAATACAATCCAAATCCAAGGGGA 60.872 44.000 0.00 0.00 42.71 4.81
4009 4166 4.344968 GGAATACAATCCAAATCCAAGGGG 59.655 45.833 0.00 0.00 39.42 4.79
4010 4167 4.344968 GGGAATACAATCCAAATCCAAGGG 59.655 45.833 0.00 0.00 41.55 3.95
4011 4168 5.211201 AGGGAATACAATCCAAATCCAAGG 58.789 41.667 0.00 0.00 41.55 3.61
4012 4169 5.302823 GGAGGGAATACAATCCAAATCCAAG 59.697 44.000 0.00 0.00 41.55 3.61
4013 4170 5.208121 GGAGGGAATACAATCCAAATCCAA 58.792 41.667 0.00 0.00 41.55 3.53
4014 4171 4.688597 CGGAGGGAATACAATCCAAATCCA 60.689 45.833 10.28 0.00 41.55 3.41
4015 4172 3.821033 CGGAGGGAATACAATCCAAATCC 59.179 47.826 0.00 0.00 41.55 3.01
4016 4173 4.461198 ACGGAGGGAATACAATCCAAATC 58.539 43.478 0.00 0.00 41.55 2.17
4017 4174 4.519906 ACGGAGGGAATACAATCCAAAT 57.480 40.909 0.00 0.00 41.55 2.32
4018 4175 5.438698 TTACGGAGGGAATACAATCCAAA 57.561 39.130 0.00 0.00 41.55 3.28
4019 4176 5.045432 AGTTTACGGAGGGAATACAATCCAA 60.045 40.000 0.00 0.00 41.55 3.53
4020 4177 4.472108 AGTTTACGGAGGGAATACAATCCA 59.528 41.667 0.00 0.00 41.55 3.41
4021 4178 5.032327 AGTTTACGGAGGGAATACAATCC 57.968 43.478 0.00 0.00 38.86 3.01
4022 4179 9.939802 ATATTAGTTTACGGAGGGAATACAATC 57.060 33.333 0.00 0.00 0.00 2.67
4028 4185 7.876582 GCTGTTATATTAGTTTACGGAGGGAAT 59.123 37.037 0.00 0.00 0.00 3.01
4029 4186 7.212274 GCTGTTATATTAGTTTACGGAGGGAA 58.788 38.462 0.00 0.00 0.00 3.97
4030 4187 6.515531 CGCTGTTATATTAGTTTACGGAGGGA 60.516 42.308 0.00 0.00 0.00 4.20
4031 4188 5.632347 CGCTGTTATATTAGTTTACGGAGGG 59.368 44.000 0.00 0.00 0.00 4.30
4032 4189 6.211515 ACGCTGTTATATTAGTTTACGGAGG 58.788 40.000 0.00 0.00 0.00 4.30
4033 4190 7.689953 AACGCTGTTATATTAGTTTACGGAG 57.310 36.000 0.00 0.00 0.00 4.63
4034 4191 9.236691 CTAAACGCTGTTATATTAGTTTACGGA 57.763 33.333 0.00 0.00 34.29 4.69
4035 4192 9.236691 TCTAAACGCTGTTATATTAGTTTACGG 57.763 33.333 0.00 0.00 34.29 4.02
4046 4203 8.761497 GCATTAAGTGATCTAAACGCTGTTATA 58.239 33.333 0.00 0.00 0.00 0.98
4047 4204 7.279981 TGCATTAAGTGATCTAAACGCTGTTAT 59.720 33.333 0.00 0.00 0.00 1.89
4048 4205 6.592220 TGCATTAAGTGATCTAAACGCTGTTA 59.408 34.615 0.00 0.00 0.00 2.41
4049 4206 5.411361 TGCATTAAGTGATCTAAACGCTGTT 59.589 36.000 0.00 0.00 0.00 3.16
4050 4207 4.935205 TGCATTAAGTGATCTAAACGCTGT 59.065 37.500 0.00 0.00 0.00 4.40
4051 4208 5.469373 TGCATTAAGTGATCTAAACGCTG 57.531 39.130 0.00 0.00 0.00 5.18
4052 4209 5.874810 TCTTGCATTAAGTGATCTAAACGCT 59.125 36.000 0.00 0.00 37.65 5.07
4053 4210 6.106877 TCTTGCATTAAGTGATCTAAACGC 57.893 37.500 0.00 0.00 37.65 4.84
4054 4211 7.743104 ACTTCTTGCATTAAGTGATCTAAACG 58.257 34.615 12.09 0.00 37.65 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.