Multiple sequence alignment - TraesCS3A01G287900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G287900 chr3A 100.000 8755 0 0 1 8755 516128413 516119659 0.000000e+00 16168
1 TraesCS3A01G287900 chr3B 95.713 5761 155 30 1208 6918 521797775 521792057 0.000000e+00 9186
2 TraesCS3A01G287900 chr3B 92.869 1248 77 9 7515 8755 521791460 521790218 0.000000e+00 1801
3 TraesCS3A01G287900 chr3B 90.885 768 36 17 428 1180 521798653 521797905 0.000000e+00 1000
4 TraesCS3A01G287900 chr3B 95.611 524 23 0 6968 7491 521792058 521791535 0.000000e+00 841
5 TraesCS3A01G287900 chr3B 88.199 322 33 5 32 352 521801037 521800720 6.410000e-101 379
6 TraesCS3A01G287900 chr3D 96.058 5454 152 23 1519 6918 396609174 396603730 0.000000e+00 8822
7 TraesCS3A01G287900 chr3D 95.243 1030 42 5 6968 7996 396603731 396602708 0.000000e+00 1624
8 TraesCS3A01G287900 chr3D 92.299 844 36 14 365 1196 396610005 396609179 0.000000e+00 1171
9 TraesCS3A01G287900 chr3D 96.094 640 25 0 8116 8755 396435599 396434960 0.000000e+00 1044


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G287900 chr3A 516119659 516128413 8754 True 16168.000000 16168 100.000000 1 8755 1 chr3A.!!$R1 8754
1 TraesCS3A01G287900 chr3B 521790218 521801037 10819 True 2641.400000 9186 92.655400 32 8755 5 chr3B.!!$R1 8723
2 TraesCS3A01G287900 chr3D 396602708 396610005 7297 True 3872.333333 8822 94.533333 365 7996 3 chr3D.!!$R2 7631
3 TraesCS3A01G287900 chr3D 396434960 396435599 639 True 1044.000000 1044 96.094000 8116 8755 1 chr3D.!!$R1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 2585 0.037734 ATTCCCGACCCAAGTCCAAC 59.962 55.000 0.00 0.0 40.12 3.77 F
1380 3526 0.036577 ACTGCCTGCATGAGAGTGAC 60.037 55.000 0.00 0.0 0.00 3.67 F
2715 4905 1.611965 GCCATTGAGAGCCCTTCCT 59.388 57.895 0.00 0.0 0.00 3.36 F
3764 5960 1.187087 AGAAGGTTCACTAGGCTCGG 58.813 55.000 0.00 0.0 0.00 4.63 F
4855 7056 0.620556 AGTGCCGGATCAGGAAATGT 59.379 50.000 16.86 0.0 0.00 2.71 F
5641 7842 1.399727 GCCAAATCAAAGGTGACGACG 60.400 52.381 0.00 0.0 36.31 5.12 F
5919 8120 0.387202 CGGACGATCTCAGCAGGAAT 59.613 55.000 0.00 0.0 0.00 3.01 F
6971 9172 0.535328 CTCGATCAGAGGCCGTCCTA 60.535 60.000 0.00 0.0 44.46 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2071 4233 2.029828 CGAAGGTGTTAGAGTGAGCAGT 60.030 50.000 0.00 0.0 0.00 4.40 R
3166 5356 0.106519 CTACTGCCTGGAAATGGGGG 60.107 60.000 0.00 0.0 0.00 5.40 R
4546 6747 1.811941 GCCACCTTACTAGCTGCATCC 60.812 57.143 1.02 0.0 0.00 3.51 R
5001 7202 0.474466 CCCTGCCAGGATCCCTCATA 60.474 60.000 13.74 0.0 37.67 2.15 R
5694 7895 1.341976 ACTTTTCCAGTGCTGTTGGGT 60.342 47.619 0.00 0.0 36.34 4.51 R
7151 9352 0.035820 GTTCTCCACATGCCCGGTAA 60.036 55.000 0.00 0.0 0.00 2.85 R
7257 9458 0.039708 GCTCCAGTTTCACTGCTTGC 60.040 55.000 0.00 0.0 44.63 4.01 R
8089 10343 0.096454 GGAGAAAACATACGCACGGC 59.904 55.000 0.00 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 9.305925 GATTCTTCAAAAGTCACAAACAAGATT 57.694 29.630 0.00 0.00 0.00 2.40
111 112 4.829064 TTGCAACACCTTAGAACATCAC 57.171 40.909 0.00 0.00 0.00 3.06
126 127 6.252995 AGAACATCACCTAGCCCAAAAATTA 58.747 36.000 0.00 0.00 0.00 1.40
140 141 8.262933 AGCCCAAAAATTATAGAGTAACGTACT 58.737 33.333 0.00 0.00 42.86 2.73
154 155 9.224267 AGAGTAACGTACTTACACAATAAGAGA 57.776 33.333 13.91 0.00 39.59 3.10
155 156 9.831737 GAGTAACGTACTTACACAATAAGAGAA 57.168 33.333 13.91 0.00 39.59 2.87
176 177 6.947464 AGAATTATTATACGATCCCACCCAG 58.053 40.000 0.00 0.00 0.00 4.45
183 184 1.303282 GATCCCACCCAGGAACACC 59.697 63.158 0.00 0.00 40.04 4.16
185 186 1.789576 ATCCCACCCAGGAACACCAC 61.790 60.000 0.00 0.00 40.04 4.16
188 189 1.228245 CACCCAGGAACACCACAGG 60.228 63.158 0.00 0.00 0.00 4.00
202 203 1.073763 CCACAGGTCCAATCTCACCAA 59.926 52.381 0.00 0.00 34.80 3.67
203 204 2.154462 CACAGGTCCAATCTCACCAAC 58.846 52.381 0.00 0.00 34.80 3.77
205 206 2.174639 ACAGGTCCAATCTCACCAACAA 59.825 45.455 0.00 0.00 34.80 2.83
206 207 2.816087 CAGGTCCAATCTCACCAACAAG 59.184 50.000 0.00 0.00 34.80 3.16
208 209 3.138283 AGGTCCAATCTCACCAACAAGAA 59.862 43.478 0.00 0.00 34.80 2.52
209 210 3.253432 GGTCCAATCTCACCAACAAGAAC 59.747 47.826 0.00 0.00 32.33 3.01
210 211 3.058914 GTCCAATCTCACCAACAAGAACG 60.059 47.826 0.00 0.00 0.00 3.95
211 212 2.350772 CCAATCTCACCAACAAGAACGC 60.351 50.000 0.00 0.00 0.00 4.84
212 213 2.254546 ATCTCACCAACAAGAACGCA 57.745 45.000 0.00 0.00 0.00 5.24
216 217 1.813178 TCACCAACAAGAACGCAAACA 59.187 42.857 0.00 0.00 0.00 2.83
228 229 3.409026 ACGCAAACAGAGAGGAAGAAT 57.591 42.857 0.00 0.00 0.00 2.40
229 230 4.537135 ACGCAAACAGAGAGGAAGAATA 57.463 40.909 0.00 0.00 0.00 1.75
231 232 5.491982 ACGCAAACAGAGAGGAAGAATATT 58.508 37.500 0.00 0.00 0.00 1.28
272 273 3.349022 TCCAACGGTGCTAATTTTAGGG 58.651 45.455 0.00 0.00 0.00 3.53
273 274 2.159296 CCAACGGTGCTAATTTTAGGGC 60.159 50.000 0.00 0.00 0.00 5.19
283 284 7.822334 GGTGCTAATTTTAGGGCTTAACAAATT 59.178 33.333 4.94 4.94 0.00 1.82
296 297 6.351286 GGCTTAACAAATTGGGATTCAGTCAT 60.351 38.462 0.00 0.00 0.00 3.06
304 305 9.217278 CAAATTGGGATTCAGTCATATCTCTAG 57.783 37.037 0.00 0.00 0.00 2.43
305 306 6.924913 TTGGGATTCAGTCATATCTCTAGG 57.075 41.667 0.00 0.00 0.00 3.02
337 338 8.397575 AGGTTTGAAATAGACTTTTCTCTTCC 57.602 34.615 9.82 7.86 36.71 3.46
338 339 8.221251 AGGTTTGAAATAGACTTTTCTCTTCCT 58.779 33.333 9.82 9.16 36.71 3.36
339 340 8.293157 GGTTTGAAATAGACTTTTCTCTTCCTG 58.707 37.037 9.82 0.00 36.71 3.86
340 341 8.841300 GTTTGAAATAGACTTTTCTCTTCCTGT 58.159 33.333 9.82 0.00 36.71 4.00
345 346 8.499403 AATAGACTTTTCTCTTCCTGTAATGC 57.501 34.615 0.00 0.00 32.75 3.56
346 347 6.120507 AGACTTTTCTCTTCCTGTAATGCT 57.879 37.500 0.00 0.00 0.00 3.79
347 348 7.246171 AGACTTTTCTCTTCCTGTAATGCTA 57.754 36.000 0.00 0.00 0.00 3.49
348 349 7.100409 AGACTTTTCTCTTCCTGTAATGCTAC 58.900 38.462 0.00 0.00 0.00 3.58
349 350 6.769512 ACTTTTCTCTTCCTGTAATGCTACA 58.230 36.000 0.00 0.00 36.57 2.74
350 351 7.398024 ACTTTTCTCTTCCTGTAATGCTACAT 58.602 34.615 0.00 0.00 37.41 2.29
351 352 7.885399 ACTTTTCTCTTCCTGTAATGCTACATT 59.115 33.333 0.00 0.00 37.41 2.71
352 353 8.635765 TTTTCTCTTCCTGTAATGCTACATTT 57.364 30.769 0.00 0.00 37.41 2.32
353 354 8.635765 TTTCTCTTCCTGTAATGCTACATTTT 57.364 30.769 0.00 0.00 37.41 1.82
354 355 8.635765 TTCTCTTCCTGTAATGCTACATTTTT 57.364 30.769 0.00 0.00 37.41 1.94
378 379 2.303311 GAGGGGATCCTGTAATGCTACC 59.697 54.545 12.58 0.00 45.05 3.18
437 2468 6.500684 TCTAACTAGAAGCAATTTGCCTTG 57.499 37.500 17.51 11.51 46.52 3.61
465 2497 3.910648 AGTAACTCTAAGCAACGGTCAC 58.089 45.455 0.00 0.00 0.00 3.67
469 2501 1.920574 CTCTAAGCAACGGTCACGATG 59.079 52.381 0.00 0.00 44.52 3.84
553 2585 0.037734 ATTCCCGACCCAAGTCCAAC 59.962 55.000 0.00 0.00 40.12 3.77
555 2587 2.824880 CCCGACCCAAGTCCAACCA 61.825 63.158 0.00 0.00 40.12 3.67
556 2588 1.302511 CCGACCCAAGTCCAACCAG 60.303 63.158 0.00 0.00 40.12 4.00
557 2589 1.966451 CGACCCAAGTCCAACCAGC 60.966 63.158 0.00 0.00 40.12 4.85
558 2590 1.456287 GACCCAAGTCCAACCAGCT 59.544 57.895 0.00 0.00 37.00 4.24
744 2784 4.803426 CTGTCCCGGAGAGCACGC 62.803 72.222 0.73 0.00 0.00 5.34
798 2838 4.888325 CTGATCCCCCGCTCCCCT 62.888 72.222 0.00 0.00 0.00 4.79
832 2872 2.100916 CCTATCCGCGGTAATATCCTGG 59.899 54.545 27.15 9.94 0.00 4.45
888 2928 1.520342 GACTGCATCCACCTCTCGC 60.520 63.158 0.00 0.00 0.00 5.03
940 2981 2.383527 GCCGCTGTTCTTCGGTCTG 61.384 63.158 2.58 0.00 46.79 3.51
955 2996 3.121030 CTGCAGGGTTCTTCCGCG 61.121 66.667 5.57 0.00 37.00 6.46
956 2997 4.697756 TGCAGGGTTCTTCCGCGG 62.698 66.667 22.12 22.12 37.00 6.46
958 2999 4.016706 CAGGGTTCTTCCGCGGGT 62.017 66.667 27.83 0.00 37.00 5.28
959 3000 3.246880 AGGGTTCTTCCGCGGGTT 61.247 61.111 27.83 0.00 37.00 4.11
960 3001 2.745100 GGGTTCTTCCGCGGGTTC 60.745 66.667 27.83 11.42 37.00 3.62
961 3002 2.346365 GGTTCTTCCGCGGGTTCT 59.654 61.111 27.83 0.00 0.00 3.01
962 3003 2.033194 GGTTCTTCCGCGGGTTCTG 61.033 63.158 27.83 11.14 0.00 3.02
963 3004 2.358247 TTCTTCCGCGGGTTCTGC 60.358 61.111 27.83 0.00 0.00 4.26
979 3020 2.124942 GCTGGGGGAGAAAGCTCG 60.125 66.667 0.00 0.00 42.25 5.03
1078 3120 0.810031 CCTGGTATTGCGTCCCTTCG 60.810 60.000 0.00 0.00 0.00 3.79
1079 3121 0.174845 CTGGTATTGCGTCCCTTCGA 59.825 55.000 0.00 0.00 0.00 3.71
1093 3135 1.732259 CCTTCGATTCCGTTCTTGTGG 59.268 52.381 0.00 0.00 37.05 4.17
1196 3239 4.282496 ACTCAACGAGATGATACTCCCTT 58.718 43.478 0.00 0.00 33.83 3.95
1197 3240 4.712337 ACTCAACGAGATGATACTCCCTTT 59.288 41.667 0.00 0.00 33.83 3.11
1198 3241 5.163499 ACTCAACGAGATGATACTCCCTTTC 60.163 44.000 0.00 0.00 33.83 2.62
1199 3242 4.709886 TCAACGAGATGATACTCCCTTTCA 59.290 41.667 0.00 0.00 33.83 2.69
1201 3244 6.549736 TCAACGAGATGATACTCCCTTTCATA 59.450 38.462 0.00 0.00 33.83 2.15
1203 3246 6.929625 ACGAGATGATACTCCCTTTCATATG 58.070 40.000 0.00 0.00 33.83 1.78
1205 3248 7.670140 ACGAGATGATACTCCCTTTCATATGTA 59.330 37.037 1.90 0.00 33.83 2.29
1206 3249 7.971168 CGAGATGATACTCCCTTTCATATGTAC 59.029 40.741 1.90 0.00 33.83 2.90
1215 3361 6.802608 TCCCTTTCATATGTACGAGTAGTTG 58.197 40.000 1.90 0.00 0.00 3.16
1229 3375 7.447243 ACGAGTAGTTGCTAACGATTATTTC 57.553 36.000 0.00 0.00 36.23 2.17
1272 3418 3.181486 TGCTATGGTGCTCTTCGAGTAAG 60.181 47.826 0.00 0.00 36.45 2.34
1281 3427 6.913673 GGTGCTCTTCGAGTAAGTAAAGATAG 59.086 42.308 0.00 0.00 36.51 2.08
1282 3428 7.415429 GGTGCTCTTCGAGTAAGTAAAGATAGT 60.415 40.741 0.00 0.00 36.51 2.12
1283 3429 7.429920 GTGCTCTTCGAGTAAGTAAAGATAGTG 59.570 40.741 0.00 0.00 36.51 2.74
1284 3430 7.120873 TGCTCTTCGAGTAAGTAAAGATAGTGT 59.879 37.037 0.00 0.00 36.51 3.55
1287 3433 9.006839 TCTTCGAGTAAGTAAAGATAGTGTTCA 57.993 33.333 0.00 0.00 36.51 3.18
1342 3488 9.903682 ATGAGAATGTGTCATTTTAGTTTCTTG 57.096 29.630 0.00 0.00 30.03 3.02
1343 3489 8.352201 TGAGAATGTGTCATTTTAGTTTCTTGG 58.648 33.333 0.00 0.00 0.00 3.61
1344 3490 7.147976 AGAATGTGTCATTTTAGTTTCTTGGC 58.852 34.615 0.00 0.00 0.00 4.52
1345 3491 5.195001 TGTGTCATTTTAGTTTCTTGGCC 57.805 39.130 0.00 0.00 0.00 5.36
1346 3492 4.646945 TGTGTCATTTTAGTTTCTTGGCCA 59.353 37.500 0.00 0.00 0.00 5.36
1347 3493 5.304101 TGTGTCATTTTAGTTTCTTGGCCAT 59.696 36.000 6.09 0.00 0.00 4.40
1348 3494 5.634859 GTGTCATTTTAGTTTCTTGGCCATG 59.365 40.000 6.09 9.88 0.00 3.66
1349 3495 5.538053 TGTCATTTTAGTTTCTTGGCCATGA 59.462 36.000 17.00 17.00 0.00 3.07
1350 3496 5.863935 GTCATTTTAGTTTCTTGGCCATGAC 59.136 40.000 20.33 15.15 33.35 3.06
1351 3497 5.538053 TCATTTTAGTTTCTTGGCCATGACA 59.462 36.000 20.33 11.95 0.00 3.58
1352 3498 6.211184 TCATTTTAGTTTCTTGGCCATGACAT 59.789 34.615 20.33 11.69 0.00 3.06
1353 3499 5.389859 TTTAGTTTCTTGGCCATGACATG 57.610 39.130 20.33 8.56 0.00 3.21
1380 3526 0.036577 ACTGCCTGCATGAGAGTGAC 60.037 55.000 0.00 0.00 0.00 3.67
1435 3581 4.853924 TTCTGAGCTGGAAATGGTTTTC 57.146 40.909 0.00 0.00 40.48 2.29
1456 3602 5.084818 TCGTGATGACAATCCACACTAAT 57.915 39.130 0.00 0.00 31.15 1.73
1496 3642 8.164153 GCAAATGCAAACAATAATCAGTTAGTG 58.836 33.333 0.00 0.00 39.86 2.74
1501 3647 9.019656 TGCAAACAATAATCAGTTAGTGGTTAT 57.980 29.630 0.04 0.04 42.12 1.89
1560 3706 6.488769 TTTGTACCTCTAGTTCTTGTTCCA 57.511 37.500 0.00 0.00 0.00 3.53
1561 3707 6.488769 TTGTACCTCTAGTTCTTGTTCCAA 57.511 37.500 0.00 0.00 0.00 3.53
1576 3737 6.313411 TCTTGTTCCAAATGTTTCTTGCTTTG 59.687 34.615 0.00 0.00 0.00 2.77
1654 3815 4.881273 TGCGGCATTTGTAGAGATATTGTT 59.119 37.500 0.00 0.00 0.00 2.83
1812 3974 3.812053 GAGGGTCAATATTGTGCAGCTAG 59.188 47.826 14.97 0.00 0.00 3.42
1813 3975 2.880890 GGGTCAATATTGTGCAGCTAGG 59.119 50.000 14.97 0.00 0.00 3.02
1851 4013 9.562752 GTTACAATCTTATTTTTCGTTTTGTGC 57.437 29.630 0.00 0.00 0.00 4.57
1872 4034 4.526262 TGCAAATATGTTGGCTAAACCTGT 59.474 37.500 3.01 0.00 38.06 4.00
1890 4052 5.500234 ACCTGTGTAGTGTCAATGCATATT 58.500 37.500 0.00 0.00 0.00 1.28
1916 4078 2.309528 TATGCACCGTCCAAGTCATC 57.690 50.000 0.00 0.00 0.00 2.92
1984 4146 3.534357 TGAAATGCTTTCCCTTACCCA 57.466 42.857 6.29 0.00 38.90 4.51
2007 4169 9.476202 CCCATTTTAAGTTCAAGTTCTTTAAGG 57.524 33.333 0.00 0.00 0.00 2.69
2048 4210 9.167311 GACATTACCATTGTTGACTAGATTCTT 57.833 33.333 0.00 0.00 0.00 2.52
2071 4233 8.218488 TCTTAGCCTCACATGTTCTATCTAGTA 58.782 37.037 0.00 0.00 0.00 1.82
2091 4254 3.669251 ACTGCTCACTCTAACACCTTC 57.331 47.619 0.00 0.00 0.00 3.46
2106 4269 4.398319 ACACCTTCGGAATTGATTTCTGT 58.602 39.130 6.52 0.00 40.92 3.41
2173 4337 8.603181 CAACGATATTGTATCAATGTTCACAGA 58.397 33.333 0.00 0.00 0.00 3.41
2174 4338 8.357796 ACGATATTGTATCAATGTTCACAGAG 57.642 34.615 0.00 0.00 0.00 3.35
2363 4528 3.262660 TCTCAGTGCTGTCAATCTTGGAT 59.737 43.478 0.00 0.00 0.00 3.41
2364 4529 4.008330 CTCAGTGCTGTCAATCTTGGATT 58.992 43.478 0.00 0.00 0.00 3.01
2365 4530 4.401022 TCAGTGCTGTCAATCTTGGATTT 58.599 39.130 0.00 0.00 0.00 2.17
2366 4531 4.828939 TCAGTGCTGTCAATCTTGGATTTT 59.171 37.500 0.00 0.00 0.00 1.82
2419 4609 7.573710 AGGTAGAACTGCATTGGAATGTAATA 58.426 34.615 1.49 0.00 38.65 0.98
2420 4610 8.052748 AGGTAGAACTGCATTGGAATGTAATAA 58.947 33.333 1.49 0.00 38.65 1.40
2516 4706 1.617357 GGTAAGGTCAGAAGGTCGTGT 59.383 52.381 0.00 0.00 0.00 4.49
2643 4833 3.053917 GGGGCCTTTCATCCTGTAAGTTA 60.054 47.826 0.84 0.00 0.00 2.24
2669 4859 8.050778 TGTAACCATTATCAGCTTTGGTAAAG 57.949 34.615 0.00 0.00 41.53 1.85
2715 4905 1.611965 GCCATTGAGAGCCCTTCCT 59.388 57.895 0.00 0.00 0.00 3.36
2734 4924 6.156429 CCTTCCTTTGGTCAGGTATACTAACT 59.844 42.308 2.25 0.00 35.15 2.24
2954 5144 7.677041 GCAACAAATAAAATAAAGGCCATGCTC 60.677 37.037 5.01 0.00 0.00 4.26
2980 5170 9.846248 CATTACTTCTCCTATTTGTTTTCCTTG 57.154 33.333 0.00 0.00 0.00 3.61
3013 5203 6.002082 CAGTGGTGATGATGATTGGTATGAT 58.998 40.000 0.00 0.00 0.00 2.45
3111 5301 9.650539 TTTCATCAATTTCTTTTCAAACAGTGA 57.349 25.926 0.00 0.00 0.00 3.41
3112 5302 9.820725 TTCATCAATTTCTTTTCAAACAGTGAT 57.179 25.926 0.00 0.00 35.70 3.06
3116 5306 9.528018 TCAATTTCTTTTCAAACAGTGATAACC 57.472 29.630 0.00 0.00 35.70 2.85
3117 5307 8.764287 CAATTTCTTTTCAAACAGTGATAACCC 58.236 33.333 0.00 0.00 35.70 4.11
3160 5350 3.641434 AGTTGATCTGTGGCTTGCTAT 57.359 42.857 0.00 0.00 0.00 2.97
3199 5389 3.153919 GGCAGTAGTTTGTTTGGATGGA 58.846 45.455 0.00 0.00 0.00 3.41
3229 5419 3.617263 GCATAATTCGAAGTGGACTCGTT 59.383 43.478 8.63 0.00 0.00 3.85
3490 5681 6.855763 ATCTGACTCTTCTCTTTGATCACT 57.144 37.500 0.00 0.00 0.00 3.41
3544 5735 4.585879 TGGGCTTGTGATAAGGAAGTTAC 58.414 43.478 0.00 0.00 0.00 2.50
3583 5779 8.726068 TGTGTATCTATTGAAGCGAAAAATGAA 58.274 29.630 0.00 0.00 0.00 2.57
3608 5804 1.676006 AGGTTGTCCTGAAGCAAAACG 59.324 47.619 0.00 0.00 43.33 3.60
3612 5808 2.360844 TGTCCTGAAGCAAAACGTCAA 58.639 42.857 0.00 0.00 36.29 3.18
3739 5935 9.178758 GGTGTAAATTCTGAAAGTAAGGATGAT 57.821 33.333 0.00 0.00 33.76 2.45
3764 5960 1.187087 AGAAGGTTCACTAGGCTCGG 58.813 55.000 0.00 0.00 0.00 4.63
3807 6003 9.941325 ATTTTATTGCAATTCACATCCAAGTTA 57.059 25.926 18.75 0.00 0.00 2.24
3834 6030 7.108194 TCCATAGATGATTTATCACATGAGGC 58.892 38.462 0.00 0.00 40.03 4.70
3918 6114 2.346803 TGAAACTAATCTGGCTCGCAC 58.653 47.619 0.00 0.00 0.00 5.34
4132 6328 6.139679 AGAAACAGTAATGGGAAATCTCCA 57.860 37.500 0.00 0.00 44.51 3.86
4174 6370 1.212688 TCATCAGCAGGTATGTTGGGG 59.787 52.381 0.00 0.00 38.14 4.96
4206 6402 2.436417 TCCAGCACAATAGTTGAAGGC 58.564 47.619 0.00 0.00 0.00 4.35
4216 6412 5.882557 ACAATAGTTGAAGGCCTCATACTTG 59.117 40.000 5.23 8.29 32.78 3.16
4314 6510 3.822735 ACAATCTGCTGTGTTAGTTGCAT 59.177 39.130 0.00 0.00 34.79 3.96
4497 6698 3.149196 GCATTCTTGTCTGTTCAAGGGA 58.851 45.455 12.40 5.70 43.25 4.20
4499 6700 4.219288 GCATTCTTGTCTGTTCAAGGGATT 59.781 41.667 12.40 0.00 43.25 3.01
4546 6747 7.822658 TCCAAATAACATCTTCCCTTTTTACG 58.177 34.615 0.00 0.00 0.00 3.18
4579 6780 0.917533 AGGTGGCAAGATCAGCTGAT 59.082 50.000 29.09 29.09 40.84 2.90
4677 6878 1.378531 TTCGCTTTGCACTCACTTGT 58.621 45.000 0.00 0.00 0.00 3.16
4733 6934 7.907045 CAGTTGCATAGATCTACACAATTTCAC 59.093 37.037 17.68 8.94 0.00 3.18
4777 6978 4.778213 TCCAGGGAGGATAGACAAAATG 57.222 45.455 0.00 0.00 43.07 2.32
4799 7000 2.502947 CCAGTGACATGGAATCAGGAGA 59.497 50.000 0.00 0.00 43.57 3.71
4855 7056 0.620556 AGTGCCGGATCAGGAAATGT 59.379 50.000 16.86 0.00 0.00 2.71
4875 7076 3.691118 TGTATCTCATTGCAAACTCAGGC 59.309 43.478 1.71 0.00 0.00 4.85
5001 7202 7.522542 TGAGTATAGTTGAAGGAGAGAGCTAT 58.477 38.462 0.00 0.00 0.00 2.97
5286 7487 2.483876 CTTTCACTCGCAAGGAAGTCA 58.516 47.619 0.00 0.00 38.47 3.41
5477 7678 6.042638 TCAGTTACTCAAGAAATCCTCAGG 57.957 41.667 0.00 0.00 0.00 3.86
5641 7842 1.399727 GCCAAATCAAAGGTGACGACG 60.400 52.381 0.00 0.00 36.31 5.12
5694 7895 8.077991 GTGACTCAGACAATCAAAATCAATTCA 58.922 33.333 0.00 0.00 0.00 2.57
5717 7918 3.191371 CCCAACAGCACTGGAAAAGTATC 59.809 47.826 2.21 0.00 36.83 2.24
5772 7973 7.425606 TGAGTAGAAGAGAAAACAAAAATGGC 58.574 34.615 0.00 0.00 0.00 4.40
5796 7997 5.511202 CCAGGCACCACAGAATAAACAAAAT 60.511 40.000 0.00 0.00 0.00 1.82
5876 8077 3.703052 AGGAAAAATGCCAGCTCTATTGG 59.297 43.478 0.00 0.00 38.78 3.16
5919 8120 0.387202 CGGACGATCTCAGCAGGAAT 59.613 55.000 0.00 0.00 0.00 3.01
5925 8126 2.103094 CGATCTCAGCAGGAATTACCCA 59.897 50.000 0.00 0.00 40.05 4.51
5935 8136 8.154856 TCAGCAGGAATTACCCATTATTAGTAC 58.845 37.037 0.00 0.00 40.05 2.73
6003 8204 9.182933 CACTACTCTAGAAACACTAACAAGTTC 57.817 37.037 0.00 0.00 0.00 3.01
6074 8275 5.425630 ACTGGACGTCATAATAAAGTTCCC 58.574 41.667 18.91 0.00 0.00 3.97
6149 8350 2.099756 GCCGGCTTCATTATTTGCTCTT 59.900 45.455 22.15 0.00 0.00 2.85
6216 8417 8.806146 AGCATACCTGTATTTTTCTTGTTCAAT 58.194 29.630 0.00 0.00 0.00 2.57
6366 8567 9.823098 GATGCTGTCAATGTAGAAAATGATATC 57.177 33.333 0.00 0.00 0.00 1.63
6620 8821 6.311690 GGACAAACTGATAAGAGTGAACTAGC 59.688 42.308 0.00 0.00 0.00 3.42
6627 8828 5.246203 TGATAAGAGTGAACTAGCTGGTGTT 59.754 40.000 2.40 2.18 0.00 3.32
6680 8881 2.325583 TTCAACAGCGTGGAAGAAGT 57.674 45.000 0.00 0.00 0.00 3.01
6738 8939 3.640029 ACAGTCCCGAGAGAAAAAGTACA 59.360 43.478 0.00 0.00 0.00 2.90
6825 9026 7.544566 ACAAATACAGACGATACTTACTTGGTG 59.455 37.037 0.00 0.00 0.00 4.17
6918 9119 7.718314 CCACTTAAAGATGAGGATGATTCATCA 59.282 37.037 24.26 9.51 45.80 3.07
6919 9120 8.775527 CACTTAAAGATGAGGATGATTCATCAG 58.224 37.037 24.26 13.11 45.03 2.90
6920 9121 8.492782 ACTTAAAGATGAGGATGATTCATCAGT 58.507 33.333 24.26 13.21 45.03 3.41
6921 9122 8.672823 TTAAAGATGAGGATGATTCATCAGTG 57.327 34.615 24.26 0.00 45.03 3.66
6922 9123 4.643463 AGATGAGGATGATTCATCAGTGC 58.357 43.478 24.26 12.49 45.03 4.40
6923 9124 3.918294 TGAGGATGATTCATCAGTGCA 57.082 42.857 24.26 14.45 42.13 4.57
6924 9125 3.805207 TGAGGATGATTCATCAGTGCAG 58.195 45.455 24.26 0.00 42.13 4.41
6925 9126 3.139850 GAGGATGATTCATCAGTGCAGG 58.860 50.000 24.26 0.00 42.13 4.85
6926 9127 2.508716 AGGATGATTCATCAGTGCAGGT 59.491 45.455 24.26 0.29 42.13 4.00
6927 9128 3.053842 AGGATGATTCATCAGTGCAGGTT 60.054 43.478 24.26 0.39 42.13 3.50
6928 9129 3.314635 GGATGATTCATCAGTGCAGGTTC 59.685 47.826 24.26 3.41 42.13 3.62
6929 9130 3.708403 TGATTCATCAGTGCAGGTTCT 57.292 42.857 0.00 0.00 32.11 3.01
6930 9131 3.340928 TGATTCATCAGTGCAGGTTCTG 58.659 45.455 0.00 0.00 32.11 3.02
6931 9132 2.189594 TTCATCAGTGCAGGTTCTGG 57.810 50.000 2.55 0.00 33.13 3.86
6932 9133 1.351076 TCATCAGTGCAGGTTCTGGA 58.649 50.000 2.55 0.00 33.13 3.86
6937 9138 2.460330 GTGCAGGTTCTGGACGATG 58.540 57.895 3.97 0.00 42.32 3.84
6938 9139 1.375908 TGCAGGTTCTGGACGATGC 60.376 57.895 7.71 7.71 40.26 3.91
6939 9140 1.375908 GCAGGTTCTGGACGATGCA 60.376 57.895 9.34 0.00 39.86 3.96
6940 9141 0.955428 GCAGGTTCTGGACGATGCAA 60.955 55.000 9.34 0.00 39.86 4.08
6941 9142 1.522668 CAGGTTCTGGACGATGCAAA 58.477 50.000 0.00 0.00 0.00 3.68
6942 9143 2.086869 CAGGTTCTGGACGATGCAAAT 58.913 47.619 0.00 0.00 0.00 2.32
6943 9144 2.489329 CAGGTTCTGGACGATGCAAATT 59.511 45.455 0.00 0.00 0.00 1.82
6944 9145 2.489329 AGGTTCTGGACGATGCAAATTG 59.511 45.455 0.00 0.00 0.00 2.32
6945 9146 2.228822 GGTTCTGGACGATGCAAATTGT 59.771 45.455 0.00 0.00 0.00 2.71
6946 9147 3.492313 GTTCTGGACGATGCAAATTGTC 58.508 45.455 0.00 0.00 34.86 3.18
6947 9148 2.777094 TCTGGACGATGCAAATTGTCA 58.223 42.857 9.41 0.00 36.82 3.58
6948 9149 2.743664 TCTGGACGATGCAAATTGTCAG 59.256 45.455 9.41 5.34 36.82 3.51
6949 9150 2.743664 CTGGACGATGCAAATTGTCAGA 59.256 45.455 9.41 0.00 36.82 3.27
6950 9151 3.145286 TGGACGATGCAAATTGTCAGAA 58.855 40.909 9.41 0.00 36.82 3.02
6951 9152 3.058293 TGGACGATGCAAATTGTCAGAAC 60.058 43.478 9.41 0.00 36.82 3.01
6952 9153 3.492313 GACGATGCAAATTGTCAGAACC 58.508 45.455 3.25 0.00 35.52 3.62
6953 9154 3.149196 ACGATGCAAATTGTCAGAACCT 58.851 40.909 0.00 0.00 0.00 3.50
6954 9155 3.189287 ACGATGCAAATTGTCAGAACCTC 59.811 43.478 0.00 0.00 0.00 3.85
6955 9156 3.725895 CGATGCAAATTGTCAGAACCTCG 60.726 47.826 0.00 0.00 0.00 4.63
6956 9157 2.844946 TGCAAATTGTCAGAACCTCGA 58.155 42.857 0.00 0.00 0.00 4.04
6957 9158 3.411446 TGCAAATTGTCAGAACCTCGAT 58.589 40.909 0.00 0.00 0.00 3.59
6958 9159 3.436704 TGCAAATTGTCAGAACCTCGATC 59.563 43.478 0.00 0.00 0.00 3.69
6959 9160 3.436704 GCAAATTGTCAGAACCTCGATCA 59.563 43.478 0.00 0.00 0.00 2.92
6960 9161 4.436584 GCAAATTGTCAGAACCTCGATCAG 60.437 45.833 0.00 0.00 0.00 2.90
6961 9162 4.808414 AATTGTCAGAACCTCGATCAGA 57.192 40.909 0.00 0.00 0.00 3.27
6962 9163 3.857549 TTGTCAGAACCTCGATCAGAG 57.142 47.619 7.37 7.37 46.44 3.35
6969 9170 2.725008 CTCGATCAGAGGCCGTCC 59.275 66.667 0.00 0.00 43.20 4.79
6971 9172 0.535328 CTCGATCAGAGGCCGTCCTA 60.535 60.000 0.00 0.00 44.46 2.94
6989 9190 5.123186 CGTCCTATCAGCAACCAAAATGTAA 59.877 40.000 0.00 0.00 0.00 2.41
7037 9238 2.093973 CCAGCGGAGAAACTACAGATGT 60.094 50.000 0.00 0.00 0.00 3.06
7086 9287 1.295792 TGGCCGAAGTCGATAAATGC 58.704 50.000 1.43 0.00 43.02 3.56
7151 9352 2.194859 AGCTGACATCCCTGATGAAGT 58.805 47.619 10.84 0.00 42.09 3.01
7180 9381 4.320788 GGCATGTGGAGAACTCAAAAGAAG 60.321 45.833 4.23 0.00 0.00 2.85
7257 9458 3.686726 CGAAAGAAGGTGAAGGAATCAGG 59.313 47.826 0.00 0.00 39.19 3.86
7334 9535 6.149633 AGTTGAATCGTAAACATTCCAAAGC 58.850 36.000 0.00 0.00 30.30 3.51
7347 9548 3.777106 TCCAAAGCAGACAAGTCATCT 57.223 42.857 2.72 0.00 0.00 2.90
7395 9596 2.957402 TGAAGAAACCAGCACCTGAT 57.043 45.000 0.00 0.00 32.44 2.90
7472 9674 1.812571 GCACTTGTATGTTCCACTGGG 59.187 52.381 0.00 0.00 0.00 4.45
7483 9685 5.186256 TGTTCCACTGGGCATCTATTTTA 57.814 39.130 0.00 0.00 0.00 1.52
7538 9791 3.801114 ACTGCTTTGTTTCACCCTTTC 57.199 42.857 0.00 0.00 0.00 2.62
7631 9884 0.039527 GGTGGGCTGTTGCTAAAACG 60.040 55.000 0.00 0.00 39.59 3.60
7703 9956 1.056660 TCAAGGAGGGTGACAAGGTC 58.943 55.000 0.00 0.00 0.00 3.85
7796 10049 0.386858 ACTGGAATGTCGTCGTGTCG 60.387 55.000 0.00 0.00 0.00 4.35
7813 10066 1.136446 GTCGTGGTTGTGCGATTACAC 60.136 52.381 0.00 0.00 39.38 2.90
7913 10167 0.320946 TGGTCGTGGATCGGGTTTTC 60.321 55.000 0.00 0.00 40.32 2.29
7924 10178 2.836262 TCGGGTTTTCGCAAAGTAGAA 58.164 42.857 0.00 0.00 0.00 2.10
7941 10195 8.798153 CAAAGTAGAACAAATTTTATCATCGGC 58.202 33.333 0.00 0.00 0.00 5.54
7944 10198 6.515272 AGAACAAATTTTATCATCGGCAGT 57.485 33.333 0.00 0.00 0.00 4.40
8003 10257 2.284039 TGTCGACCGAATGGGGGA 60.284 61.111 14.12 0.00 41.60 4.81
8005 10259 1.268992 TGTCGACCGAATGGGGGAAT 61.269 55.000 14.12 0.00 41.60 3.01
8006 10260 0.754472 GTCGACCGAATGGGGGAATA 59.246 55.000 3.51 0.00 41.60 1.75
8012 10266 0.400594 CGAATGGGGGAATAGGGACC 59.599 60.000 0.00 0.00 0.00 4.46
8013 10267 0.778083 GAATGGGGGAATAGGGACCC 59.222 60.000 0.59 0.59 44.89 4.46
8019 10273 1.591768 GGGAATAGGGACCCAGTTCA 58.408 55.000 22.30 1.77 44.96 3.18
8071 10325 2.658268 GCGTGGGTTTGCAACTGC 60.658 61.111 0.00 0.00 42.50 4.40
8074 10328 0.040425 CGTGGGTTTGCAACTGCTAC 60.040 55.000 0.00 0.00 42.66 3.58
8089 10343 0.373716 GCTACGGAAATTCAGTGCGG 59.626 55.000 8.97 1.26 33.68 5.69
8092 10346 2.485122 GGAAATTCAGTGCGGCCG 59.515 61.111 24.05 24.05 0.00 6.13
8109 10363 0.725117 CCGTGCGTATGTTTTCTCCC 59.275 55.000 0.00 0.00 0.00 4.30
8110 10364 0.368907 CGTGCGTATGTTTTCTCCCG 59.631 55.000 0.00 0.00 0.00 5.14
8113 10367 1.270412 TGCGTATGTTTTCTCCCGTGT 60.270 47.619 0.00 0.00 0.00 4.49
8118 10372 4.143263 CGTATGTTTTCTCCCGTGTTGTAC 60.143 45.833 0.00 0.00 0.00 2.90
8162 10422 2.849294 TTATGGCTGCAGTACACACA 57.151 45.000 16.64 5.77 0.00 3.72
8164 10424 0.108396 ATGGCTGCAGTACACACACA 59.892 50.000 16.64 2.65 0.00 3.72
8240 10500 2.355481 GCGAACCCGACACGTTCT 60.355 61.111 0.00 0.00 37.96 3.01
8249 10509 1.598676 CCGACACGTTCTTTCTCGACA 60.599 52.381 0.00 0.00 0.00 4.35
8414 10674 4.030452 GCGAAGTGCAGCACCACC 62.030 66.667 22.41 10.30 45.45 4.61
8471 10731 4.778143 AACACCGAGATGCCCCGC 62.778 66.667 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.927668 CCATGTTATGGTGATTTTTAGAGTTTT 57.072 29.630 0.00 0.00 45.54 2.43
71 72 6.406093 TGCAAATCTTGTTTGTGACTTTTG 57.594 33.333 2.90 0.00 0.00 2.44
73 74 5.931146 TGTTGCAAATCTTGTTTGTGACTTT 59.069 32.000 0.00 0.00 0.00 2.66
76 77 4.032786 GGTGTTGCAAATCTTGTTTGTGAC 59.967 41.667 0.00 3.12 0.00 3.67
90 91 3.568007 GGTGATGTTCTAAGGTGTTGCAA 59.432 43.478 0.00 0.00 0.00 4.08
111 112 7.713942 ACGTTACTCTATAATTTTTGGGCTAGG 59.286 37.037 0.00 0.00 0.00 3.02
150 151 6.729100 TGGGTGGGATCGTATAATAATTCTCT 59.271 38.462 0.00 0.00 0.00 3.10
151 152 6.942976 TGGGTGGGATCGTATAATAATTCTC 58.057 40.000 0.00 0.00 0.00 2.87
152 153 6.070194 CCTGGGTGGGATCGTATAATAATTCT 60.070 42.308 0.00 0.00 0.00 2.40
153 154 6.070424 TCCTGGGTGGGATCGTATAATAATTC 60.070 42.308 0.00 0.00 36.20 2.17
154 155 5.788533 TCCTGGGTGGGATCGTATAATAATT 59.211 40.000 0.00 0.00 36.20 1.40
155 156 5.347124 TCCTGGGTGGGATCGTATAATAAT 58.653 41.667 0.00 0.00 36.20 1.28
159 160 2.701951 GTTCCTGGGTGGGATCGTATAA 59.298 50.000 0.00 0.00 35.07 0.98
160 161 2.322658 GTTCCTGGGTGGGATCGTATA 58.677 52.381 0.00 0.00 35.07 1.47
176 177 1.073923 AGATTGGACCTGTGGTGTTCC 59.926 52.381 0.00 0.00 35.25 3.62
183 184 2.154462 GTTGGTGAGATTGGACCTGTG 58.846 52.381 0.00 0.00 32.98 3.66
185 186 2.566833 TGTTGGTGAGATTGGACCTG 57.433 50.000 0.00 0.00 32.98 4.00
188 189 3.058914 CGTTCTTGTTGGTGAGATTGGAC 60.059 47.826 0.00 0.00 0.00 4.02
202 203 2.158957 TCCTCTCTGTTTGCGTTCTTGT 60.159 45.455 0.00 0.00 0.00 3.16
203 204 2.483876 TCCTCTCTGTTTGCGTTCTTG 58.516 47.619 0.00 0.00 0.00 3.02
205 206 2.365617 TCTTCCTCTCTGTTTGCGTTCT 59.634 45.455 0.00 0.00 0.00 3.01
206 207 2.755650 TCTTCCTCTCTGTTTGCGTTC 58.244 47.619 0.00 0.00 0.00 3.95
208 209 2.910688 TTCTTCCTCTCTGTTTGCGT 57.089 45.000 0.00 0.00 0.00 5.24
209 210 6.428385 AAATATTCTTCCTCTCTGTTTGCG 57.572 37.500 0.00 0.00 0.00 4.85
210 211 7.031975 CCAAAATATTCTTCCTCTCTGTTTGC 58.968 38.462 0.00 0.00 0.00 3.68
211 212 8.025445 CACCAAAATATTCTTCCTCTCTGTTTG 58.975 37.037 0.00 0.00 0.00 2.93
212 213 7.944554 TCACCAAAATATTCTTCCTCTCTGTTT 59.055 33.333 0.00 0.00 0.00 2.83
216 217 7.922382 TCTTCACCAAAATATTCTTCCTCTCT 58.078 34.615 0.00 0.00 0.00 3.10
247 248 5.804979 CCTAAAATTAGCACCGTTGGAATTG 59.195 40.000 0.00 0.00 0.00 2.32
253 254 2.752903 AGCCCTAAAATTAGCACCGTTG 59.247 45.455 0.00 0.00 0.00 4.10
254 255 3.081710 AGCCCTAAAATTAGCACCGTT 57.918 42.857 0.00 0.00 0.00 4.44
255 256 2.801077 AGCCCTAAAATTAGCACCGT 57.199 45.000 0.00 0.00 0.00 4.83
256 257 4.396790 TGTTAAGCCCTAAAATTAGCACCG 59.603 41.667 0.00 0.00 0.00 4.94
272 273 6.024552 TGACTGAATCCCAATTTGTTAAGC 57.975 37.500 0.00 0.00 0.00 3.09
273 274 9.956720 GATATGACTGAATCCCAATTTGTTAAG 57.043 33.333 0.00 0.00 0.00 1.85
283 284 6.219537 TCCTAGAGATATGACTGAATCCCA 57.780 41.667 0.00 0.00 0.00 4.37
352 353 4.023291 GCATTACAGGATCCCCTCAAAAA 58.977 43.478 8.55 0.00 42.02 1.94
353 354 3.269381 AGCATTACAGGATCCCCTCAAAA 59.731 43.478 8.55 0.00 42.02 2.44
354 355 2.852449 AGCATTACAGGATCCCCTCAAA 59.148 45.455 8.55 0.00 42.02 2.69
355 356 2.492025 AGCATTACAGGATCCCCTCAA 58.508 47.619 8.55 0.00 42.02 3.02
356 357 2.196742 AGCATTACAGGATCCCCTCA 57.803 50.000 8.55 0.00 42.02 3.86
357 358 2.303311 GGTAGCATTACAGGATCCCCTC 59.697 54.545 8.55 0.00 42.02 4.30
358 359 2.089925 AGGTAGCATTACAGGATCCCCT 60.090 50.000 8.55 0.06 45.74 4.79
359 360 2.339769 AGGTAGCATTACAGGATCCCC 58.660 52.381 8.55 0.00 0.00 4.81
360 361 3.555168 CGAAGGTAGCATTACAGGATCCC 60.555 52.174 8.55 0.00 0.00 3.85
361 362 3.069729 ACGAAGGTAGCATTACAGGATCC 59.930 47.826 2.48 2.48 0.00 3.36
362 363 4.051922 CACGAAGGTAGCATTACAGGATC 58.948 47.826 0.00 0.00 0.00 3.36
363 364 3.704566 TCACGAAGGTAGCATTACAGGAT 59.295 43.478 0.00 0.00 0.00 3.24
378 379 4.466567 TTTACTGTTGTGCATCACGAAG 57.533 40.909 0.00 0.00 37.14 3.79
445 2477 2.660236 CGTGACCGTTGCTTAGAGTTAC 59.340 50.000 0.00 0.00 0.00 2.50
449 2481 1.920574 CATCGTGACCGTTGCTTAGAG 59.079 52.381 0.00 0.00 35.01 2.43
451 2483 1.654105 GACATCGTGACCGTTGCTTAG 59.346 52.381 0.00 0.00 37.30 2.18
465 2497 2.667969 TGCACGAAATCTGAAGACATCG 59.332 45.455 12.49 12.49 39.71 3.84
469 2501 4.032672 CAGATCTGCACGAAATCTGAAGAC 59.967 45.833 10.38 0.00 46.01 3.01
507 2539 3.121030 GCAATCGAGCCACTGCGT 61.121 61.111 0.00 0.00 44.33 5.24
809 2849 3.949754 CAGGATATTACCGCGGATAGGTA 59.050 47.826 35.90 16.64 42.81 3.08
832 2872 2.416893 GGAAACTTGAACTCGATCAGCC 59.583 50.000 0.00 0.00 0.00 4.85
888 2928 3.672255 CTCAAAGCACCGCGGCATG 62.672 63.158 28.58 18.99 35.83 4.06
955 2996 1.789576 TTTCTCCCCCAGCAGAACCC 61.790 60.000 0.00 0.00 0.00 4.11
956 2997 0.322906 CTTTCTCCCCCAGCAGAACC 60.323 60.000 0.00 0.00 0.00 3.62
957 2998 0.962855 GCTTTCTCCCCCAGCAGAAC 60.963 60.000 0.00 0.00 33.45 3.01
958 2999 1.136329 AGCTTTCTCCCCCAGCAGAA 61.136 55.000 0.00 0.00 35.88 3.02
959 3000 1.539869 AGCTTTCTCCCCCAGCAGA 60.540 57.895 0.00 0.00 35.88 4.26
960 3001 1.077858 GAGCTTTCTCCCCCAGCAG 60.078 63.158 0.00 0.00 35.88 4.24
961 3002 2.959484 CGAGCTTTCTCCCCCAGCA 61.959 63.158 0.00 0.00 35.88 4.41
962 3003 2.124942 CGAGCTTTCTCCCCCAGC 60.125 66.667 0.00 0.00 35.94 4.85
963 3004 2.586792 CCGAGCTTTCTCCCCCAG 59.413 66.667 0.00 0.00 35.94 4.45
968 3009 1.435408 GCAGATGCCGAGCTTTCTCC 61.435 60.000 0.00 0.00 35.94 3.71
1034 3075 1.288350 CATCTCTTCCAGCGCTTCAG 58.712 55.000 7.50 3.69 0.00 3.02
1078 3120 5.217393 GGTTTTTACCACAAGAACGGAATC 58.783 41.667 0.00 0.00 0.00 2.52
1079 3121 4.261280 CGGTTTTTACCACAAGAACGGAAT 60.261 41.667 0.00 0.00 0.00 3.01
1093 3135 3.349488 AAGCAAGCACTCGGTTTTTAC 57.651 42.857 0.00 0.00 0.00 2.01
1196 3239 6.908820 CGTTAGCAACTACTCGTACATATGAA 59.091 38.462 10.38 0.00 0.00 2.57
1197 3240 6.258507 TCGTTAGCAACTACTCGTACATATGA 59.741 38.462 10.38 0.00 0.00 2.15
1198 3241 6.424683 TCGTTAGCAACTACTCGTACATATG 58.575 40.000 0.00 0.00 0.00 1.78
1199 3242 6.609237 TCGTTAGCAACTACTCGTACATAT 57.391 37.500 0.00 0.00 0.00 1.78
1201 3244 4.952262 TCGTTAGCAACTACTCGTACAT 57.048 40.909 0.00 0.00 0.00 2.29
1203 3246 7.905031 AATAATCGTTAGCAACTACTCGTAC 57.095 36.000 0.00 0.00 0.00 3.67
1205 3248 6.195983 CGAAATAATCGTTAGCAACTACTCGT 59.804 38.462 0.00 0.00 46.52 4.18
1206 3249 6.561039 CGAAATAATCGTTAGCAACTACTCG 58.439 40.000 0.00 0.00 46.52 4.18
1229 3375 2.100631 GGCGAACAGACCATCCACG 61.101 63.158 0.00 0.00 0.00 4.94
1281 3427 7.928706 AGAAGAGCTATGTAACCATATGAACAC 59.071 37.037 3.65 0.00 33.18 3.32
1282 3428 8.023021 AGAAGAGCTATGTAACCATATGAACA 57.977 34.615 3.65 6.16 33.18 3.18
1283 3429 8.144478 TGAGAAGAGCTATGTAACCATATGAAC 58.856 37.037 3.65 0.19 33.18 3.18
1284 3430 8.250143 TGAGAAGAGCTATGTAACCATATGAA 57.750 34.615 3.65 0.00 33.18 2.57
1287 3433 8.200024 ACATGAGAAGAGCTATGTAACCATAT 57.800 34.615 0.00 0.00 33.18 1.78
1318 3464 7.327032 GCCAAGAAACTAAAATGACACATTCTC 59.673 37.037 0.00 0.00 0.00 2.87
1319 3465 7.147976 GCCAAGAAACTAAAATGACACATTCT 58.852 34.615 0.00 0.00 0.00 2.40
1324 3470 5.195001 TGGCCAAGAAACTAAAATGACAC 57.805 39.130 0.61 0.00 0.00 3.67
1325 3471 5.538053 TCATGGCCAAGAAACTAAAATGACA 59.462 36.000 10.96 0.00 0.00 3.58
1326 3472 5.863935 GTCATGGCCAAGAAACTAAAATGAC 59.136 40.000 13.20 11.81 35.93 3.06
1328 3474 5.782047 TGTCATGGCCAAGAAACTAAAATG 58.218 37.500 13.20 0.00 0.00 2.32
1329 3475 6.400568 CATGTCATGGCCAAGAAACTAAAAT 58.599 36.000 13.20 0.00 0.00 1.82
1330 3476 5.279406 CCATGTCATGGCCAAGAAACTAAAA 60.279 40.000 18.91 0.00 44.70 1.52
1331 3477 4.220382 CCATGTCATGGCCAAGAAACTAAA 59.780 41.667 18.91 0.00 44.70 1.85
1332 3478 3.763360 CCATGTCATGGCCAAGAAACTAA 59.237 43.478 18.91 0.00 44.70 2.24
1333 3479 3.355378 CCATGTCATGGCCAAGAAACTA 58.645 45.455 18.91 0.10 44.70 2.24
1334 3480 2.173519 CCATGTCATGGCCAAGAAACT 58.826 47.619 18.91 0.00 44.70 2.66
1335 3481 2.660189 CCATGTCATGGCCAAGAAAC 57.340 50.000 18.91 7.68 44.70 2.78
1345 3491 1.135199 GCAGTGCTTTCCCATGTCATG 60.135 52.381 8.18 5.79 0.00 3.07
1346 3492 1.180029 GCAGTGCTTTCCCATGTCAT 58.820 50.000 8.18 0.00 0.00 3.06
1347 3493 0.895100 GGCAGTGCTTTCCCATGTCA 60.895 55.000 16.11 0.00 0.00 3.58
1348 3494 0.610232 AGGCAGTGCTTTCCCATGTC 60.610 55.000 16.11 0.00 0.00 3.06
1349 3495 0.896940 CAGGCAGTGCTTTCCCATGT 60.897 55.000 16.11 0.00 0.00 3.21
1350 3496 1.888018 CAGGCAGTGCTTTCCCATG 59.112 57.895 16.11 0.00 0.00 3.66
1351 3497 4.428845 CAGGCAGTGCTTTCCCAT 57.571 55.556 16.11 0.00 0.00 4.00
1372 3518 5.674933 AATTCAAAAGGTTCGTCACTCTC 57.325 39.130 0.00 0.00 0.00 3.20
1374 3520 6.314784 CCATAATTCAAAAGGTTCGTCACTC 58.685 40.000 0.00 0.00 0.00 3.51
1380 3526 6.092748 CAGTTCCCATAATTCAAAAGGTTCG 58.907 40.000 0.00 0.00 0.00 3.95
1435 3581 5.801350 AATTAGTGTGGATTGTCATCACG 57.199 39.130 0.00 0.00 34.71 4.35
1456 3602 2.614987 GCATTTGCATACCCAGCCAAAA 60.615 45.455 0.00 0.00 41.59 2.44
1496 3642 5.121768 CCTATAATGGCAAGCACGTATAACC 59.878 44.000 0.00 0.00 0.00 2.85
1501 3647 2.701423 TCCCTATAATGGCAAGCACGTA 59.299 45.455 0.00 0.00 0.00 3.57
1560 3706 6.761312 TGGATGATCAAAGCAAGAAACATTT 58.239 32.000 0.00 0.00 0.00 2.32
1561 3707 6.349243 TGGATGATCAAAGCAAGAAACATT 57.651 33.333 0.00 0.00 0.00 2.71
1654 3815 5.839063 ACCATCCAAAACTCCTCTATCGATA 59.161 40.000 4.78 4.78 0.00 2.92
1851 4013 6.024552 ACACAGGTTTAGCCAACATATTTG 57.975 37.500 0.00 0.00 40.61 2.32
1872 4034 6.649155 ACACCTAATATGCATTGACACTACA 58.351 36.000 3.54 0.00 0.00 2.74
2048 4210 7.445707 CAGTACTAGATAGAACATGTGAGGCTA 59.554 40.741 0.00 0.00 0.00 3.93
2071 4233 2.029828 CGAAGGTGTTAGAGTGAGCAGT 60.030 50.000 0.00 0.00 0.00 4.40
2091 4254 5.817296 TCCTCATGTACAGAAATCAATTCCG 59.183 40.000 0.33 0.00 38.94 4.30
2132 4295 8.033038 ACAATATCGTTGCTTAGTGACTAGAAA 58.967 33.333 0.00 0.00 0.00 2.52
2135 4298 9.119329 GATACAATATCGTTGCTTAGTGACTAG 57.881 37.037 0.00 0.00 0.00 2.57
2173 4337 6.534634 AGCTTTAAACAACTCATGTAGGACT 58.465 36.000 0.00 0.00 42.99 3.85
2174 4338 6.651225 AGAGCTTTAAACAACTCATGTAGGAC 59.349 38.462 9.59 0.00 42.99 3.85
2227 4391 5.687285 GCATGTATAGCAAAACCTGTTATGC 59.313 40.000 0.00 0.00 35.36 3.14
2436 4626 8.666573 CAGTACCAGTACTATCATATACCTTCG 58.333 40.741 10.04 0.00 43.98 3.79
2516 4706 7.907389 ACTAAGAGATGTTCAAACTGATGGTA 58.093 34.615 0.00 0.00 0.00 3.25
2607 4797 0.469494 GGCCCCAAAAATATGGCAGG 59.531 55.000 0.00 0.00 45.83 4.85
2643 4833 8.588290 TTTACCAAAGCTGATAATGGTTACAT 57.412 30.769 8.35 0.00 43.47 2.29
2694 4884 4.496336 AGGGCTCTCAATGGCGCC 62.496 66.667 22.73 22.73 41.34 6.53
2734 4924 4.716784 AGGTGACTCAGTTGCCATCTTATA 59.283 41.667 2.02 0.00 32.90 0.98
2824 5014 3.395273 TGATATGGCATGGATTCACAGGA 59.605 43.478 10.98 0.00 0.00 3.86
2954 5144 9.846248 CAAGGAAAACAAATAGGAGAAGTAATG 57.154 33.333 0.00 0.00 0.00 1.90
2980 5170 4.395854 TCATCATCACCACTGCACAATAAC 59.604 41.667 0.00 0.00 0.00 1.89
3013 5203 0.537143 ATGTGTTGCTTTCGCCTGGA 60.537 50.000 0.00 0.00 34.43 3.86
3093 5283 7.441836 GGGGTTATCACTGTTTGAAAAGAAAT 58.558 34.615 0.00 0.00 37.92 2.17
3096 5286 4.830600 GGGGGTTATCACTGTTTGAAAAGA 59.169 41.667 0.00 0.00 37.92 2.52
3117 5307 3.780294 TCGGGAGATAATGAATATGGGGG 59.220 47.826 0.00 0.00 0.00 5.40
3166 5356 0.106519 CTACTGCCTGGAAATGGGGG 60.107 60.000 0.00 0.00 0.00 5.40
3199 5389 4.336433 CCACTTCGAATTATGCAATCACCT 59.664 41.667 0.00 0.00 0.00 4.00
3477 5668 4.202398 ACCAGCAAAGAGTGATCAAAGAGA 60.202 41.667 0.00 0.00 0.00 3.10
3487 5678 4.404073 AGATACTCCTACCAGCAAAGAGTG 59.596 45.833 0.00 0.00 38.25 3.51
3490 5681 7.676683 ATAAAGATACTCCTACCAGCAAAGA 57.323 36.000 0.00 0.00 0.00 2.52
3544 5735 9.987272 TCAATAGATACACATCTACAGAATTGG 57.013 33.333 0.00 0.00 44.63 3.16
3583 5779 1.980765 TGCTTCAGGACAACCTCTGAT 59.019 47.619 0.00 0.00 45.94 2.90
3608 5804 8.149647 AGATGTTCTATCAGAATCTCCATTGAC 58.850 37.037 0.00 0.00 36.50 3.18
3612 5808 7.093988 CGGTAGATGTTCTATCAGAATCTCCAT 60.094 40.741 0.00 0.00 36.50 3.41
3739 5935 5.438833 GAGCCTAGTGAACCTTCTAGTAGA 58.561 45.833 0.00 0.00 33.81 2.59
3744 5940 2.025605 TCCGAGCCTAGTGAACCTTCTA 60.026 50.000 0.00 0.00 0.00 2.10
3764 5960 1.831580 AATGCTTCTTGGGCTGTCTC 58.168 50.000 0.00 0.00 0.00 3.36
3807 6003 9.682465 CCTCATGTGATAAATCATCTATGGAAT 57.318 33.333 0.00 0.00 39.30 3.01
3834 6030 2.159198 GGGATACAGGCATTTGCAACAG 60.159 50.000 0.00 0.00 40.56 3.16
3918 6114 2.680841 TGTGTTGGTTCAGAAGAAACCG 59.319 45.455 5.73 0.00 40.85 4.44
4011 6207 4.693566 GTGGTACTTCCGATTGTTCATTCA 59.306 41.667 0.00 0.00 39.52 2.57
4021 6217 3.543680 CCATCTTGTGGTACTTCCGAT 57.456 47.619 0.00 0.00 43.44 4.18
4068 6264 3.514309 TCCTGTACTTTCAGCCTCCTTAC 59.486 47.826 0.00 0.00 34.47 2.34
4132 6328 5.300034 TGAAAGTTGTGCAGATTTGATGACT 59.700 36.000 0.00 0.00 0.00 3.41
4198 6394 3.623510 GCTACAAGTATGAGGCCTTCAAC 59.376 47.826 6.77 5.36 39.77 3.18
4206 6402 7.517614 TCTCTGATAAGCTACAAGTATGAGG 57.482 40.000 0.00 0.00 0.00 3.86
4295 6491 3.947868 AGATGCAACTAACACAGCAGAT 58.052 40.909 0.00 0.00 40.71 2.90
4297 6493 4.494350 AAAGATGCAACTAACACAGCAG 57.506 40.909 0.00 0.00 40.71 4.24
4435 6632 2.093711 GGGCCAGAAACAAACAAACAGT 60.094 45.455 4.39 0.00 0.00 3.55
4546 6747 1.811941 GCCACCTTACTAGCTGCATCC 60.812 57.143 1.02 0.00 0.00 3.51
4677 6878 7.931407 TGTGAGAGTGAAAATTAGCAGTTCTTA 59.069 33.333 0.00 0.00 0.00 2.10
4762 6963 4.333926 GTCACTGGCATTTTGTCTATCCTC 59.666 45.833 0.00 0.00 0.00 3.71
4777 6978 1.065199 TCCTGATTCCATGTCACTGGC 60.065 52.381 0.00 0.00 36.16 4.85
4799 7000 5.674525 TCTTCGCAGGATGACTAATTTCAT 58.325 37.500 0.00 0.00 39.69 2.57
4855 7056 2.938451 CGCCTGAGTTTGCAATGAGATA 59.062 45.455 0.00 0.00 0.00 1.98
4875 7076 2.416747 TGGCAGTCTGATGAAGAAACG 58.583 47.619 3.32 0.00 36.40 3.60
5001 7202 0.474466 CCCTGCCAGGATCCCTCATA 60.474 60.000 13.74 0.00 37.67 2.15
5176 7377 4.312443 TCGTCAAAAGCGTTATCCTTCTT 58.688 39.130 0.00 0.00 0.00 2.52
5286 7487 2.071778 TCTTGCCCTTTTGAAGCAGT 57.928 45.000 0.00 0.00 37.89 4.40
5477 7678 1.837538 TTCTTTGCGCGTGCCAGTAC 61.838 55.000 19.87 0.00 41.78 2.73
5600 7801 4.459337 GGCTATTTTTATCGAATGGGAGGG 59.541 45.833 0.00 0.00 0.00 4.30
5641 7842 3.242706 GCAGGTTTGTTTGTTGATTTGCC 60.243 43.478 0.00 0.00 0.00 4.52
5694 7895 1.341976 ACTTTTCCAGTGCTGTTGGGT 60.342 47.619 0.00 0.00 36.34 4.51
5772 7973 2.513753 TGTTTATTCTGTGGTGCCTGG 58.486 47.619 0.00 0.00 0.00 4.45
5796 7997 4.132336 GCTTGATATCACCAGCAGATTGA 58.868 43.478 19.93 0.00 31.77 2.57
5876 8077 4.216257 TGCCTTCTGTTTGATCTTTGCTAC 59.784 41.667 0.00 0.00 0.00 3.58
5919 8120 8.010733 AGCTAACACGTACTAATAATGGGTAA 57.989 34.615 0.00 0.00 0.00 2.85
6003 8204 4.037565 AGGAAGTTTTGCCTAAGAAAACCG 59.962 41.667 0.00 0.00 42.03 4.44
6178 8379 9.965824 AAATACAGGTATGCTTGCAATTTATAC 57.034 29.630 0.00 9.13 0.00 1.47
6193 8394 9.088987 ACCATTGAACAAGAAAAATACAGGTAT 57.911 29.630 0.00 0.00 0.00 2.73
6216 8417 8.865090 ACATAAGTTTGGTTGATAATTTGACCA 58.135 29.630 0.00 0.00 40.23 4.02
6493 8694 5.292834 CAGTTGTAACCTGCTGTGATATCAG 59.707 44.000 5.42 0.00 38.35 2.90
6620 8821 1.998315 CATTCTGCTCGAGAACACCAG 59.002 52.381 18.75 13.41 43.71 4.00
6738 8939 3.330701 TCCTGGAATTACCTTCAGCTGTT 59.669 43.478 14.67 0.00 39.86 3.16
6774 8975 2.231215 TTTGTTGCGTGGAAATTGGG 57.769 45.000 0.00 0.00 0.00 4.12
6825 9026 2.416893 GCTCGGTTCAGAGTCCAAATTC 59.583 50.000 2.46 0.00 40.26 2.17
6918 9119 0.036952 CATCGTCCAGAACCTGCACT 60.037 55.000 0.00 0.00 0.00 4.40
6919 9120 1.639298 GCATCGTCCAGAACCTGCAC 61.639 60.000 0.00 0.00 34.65 4.57
6920 9121 1.375908 GCATCGTCCAGAACCTGCA 60.376 57.895 0.00 0.00 34.65 4.41
6921 9122 0.955428 TTGCATCGTCCAGAACCTGC 60.955 55.000 0.00 0.00 34.94 4.85
6922 9123 1.522668 TTTGCATCGTCCAGAACCTG 58.477 50.000 0.00 0.00 0.00 4.00
6923 9124 2.489329 CAATTTGCATCGTCCAGAACCT 59.511 45.455 0.00 0.00 0.00 3.50
6924 9125 2.228822 ACAATTTGCATCGTCCAGAACC 59.771 45.455 0.00 0.00 0.00 3.62
6925 9126 3.058293 TGACAATTTGCATCGTCCAGAAC 60.058 43.478 0.00 0.00 0.00 3.01
6926 9127 3.145286 TGACAATTTGCATCGTCCAGAA 58.855 40.909 0.00 0.00 0.00 3.02
6927 9128 2.743664 CTGACAATTTGCATCGTCCAGA 59.256 45.455 0.00 0.00 0.00 3.86
6928 9129 2.743664 TCTGACAATTTGCATCGTCCAG 59.256 45.455 0.00 0.00 0.00 3.86
6929 9130 2.777094 TCTGACAATTTGCATCGTCCA 58.223 42.857 0.00 0.00 0.00 4.02
6930 9131 3.492313 GTTCTGACAATTTGCATCGTCC 58.508 45.455 0.00 0.00 0.00 4.79
6931 9132 3.189287 AGGTTCTGACAATTTGCATCGTC 59.811 43.478 0.00 0.00 0.00 4.20
6932 9133 3.149196 AGGTTCTGACAATTTGCATCGT 58.851 40.909 0.00 0.00 0.00 3.73
6933 9134 3.725895 CGAGGTTCTGACAATTTGCATCG 60.726 47.826 0.00 0.00 0.00 3.84
6934 9135 3.436704 TCGAGGTTCTGACAATTTGCATC 59.563 43.478 0.00 0.00 0.00 3.91
6935 9136 3.411446 TCGAGGTTCTGACAATTTGCAT 58.589 40.909 0.00 0.00 0.00 3.96
6936 9137 2.844946 TCGAGGTTCTGACAATTTGCA 58.155 42.857 0.00 0.00 0.00 4.08
6937 9138 3.436704 TGATCGAGGTTCTGACAATTTGC 59.563 43.478 0.00 0.00 0.00 3.68
6938 9139 4.931601 TCTGATCGAGGTTCTGACAATTTG 59.068 41.667 0.00 0.00 0.00 2.32
6939 9140 5.152623 TCTGATCGAGGTTCTGACAATTT 57.847 39.130 0.00 0.00 0.00 1.82
6940 9141 4.753233 CTCTGATCGAGGTTCTGACAATT 58.247 43.478 6.66 0.00 36.06 2.32
6941 9142 4.383850 CTCTGATCGAGGTTCTGACAAT 57.616 45.455 6.66 0.00 36.06 2.71
6942 9143 3.857549 CTCTGATCGAGGTTCTGACAA 57.142 47.619 6.66 0.00 36.06 3.18
6952 9153 0.535328 TAGGACGGCCTCTGATCGAG 60.535 60.000 16.98 7.37 45.54 4.04
6953 9154 0.110678 ATAGGACGGCCTCTGATCGA 59.889 55.000 16.98 0.00 45.54 3.59
6954 9155 0.523966 GATAGGACGGCCTCTGATCG 59.476 60.000 16.98 0.00 45.54 3.69
6955 9156 1.543802 CTGATAGGACGGCCTCTGATC 59.456 57.143 16.98 13.25 45.54 2.92
6956 9157 1.626686 CTGATAGGACGGCCTCTGAT 58.373 55.000 16.98 0.00 45.54 2.90
6957 9158 1.109920 GCTGATAGGACGGCCTCTGA 61.110 60.000 16.98 0.00 45.54 3.27
6958 9159 1.365633 GCTGATAGGACGGCCTCTG 59.634 63.158 16.98 5.99 45.54 3.35
6959 9160 0.687757 TTGCTGATAGGACGGCCTCT 60.688 55.000 16.98 2.51 45.54 3.69
6960 9161 0.530870 GTTGCTGATAGGACGGCCTC 60.531 60.000 16.98 0.00 45.54 4.70
6962 9163 1.523938 GGTTGCTGATAGGACGGCC 60.524 63.158 0.00 0.00 40.96 6.13
6963 9164 0.392461 TTGGTTGCTGATAGGACGGC 60.392 55.000 0.00 0.00 41.89 5.68
6964 9165 2.107950 TTTGGTTGCTGATAGGACGG 57.892 50.000 0.00 0.00 0.00 4.79
6965 9166 3.440173 ACATTTTGGTTGCTGATAGGACG 59.560 43.478 0.00 0.00 0.00 4.79
6966 9167 6.509418 TTACATTTTGGTTGCTGATAGGAC 57.491 37.500 0.00 0.00 0.00 3.85
6967 9168 7.615365 AGAATTACATTTTGGTTGCTGATAGGA 59.385 33.333 0.00 0.00 0.00 2.94
6968 9169 7.703621 CAGAATTACATTTTGGTTGCTGATAGG 59.296 37.037 0.00 0.00 0.00 2.57
6969 9170 8.461222 TCAGAATTACATTTTGGTTGCTGATAG 58.539 33.333 0.00 0.00 0.00 2.08
6970 9171 8.347004 TCAGAATTACATTTTGGTTGCTGATA 57.653 30.769 0.00 0.00 0.00 2.15
6971 9172 7.230849 TCAGAATTACATTTTGGTTGCTGAT 57.769 32.000 0.00 0.00 0.00 2.90
7014 9215 0.895530 CTGTAGTTTCTCCGCTGGGA 59.104 55.000 0.00 0.00 41.08 4.37
7037 9238 5.860941 TGAAAGGGTTTCATTTGCTGTTA 57.139 34.783 0.00 0.00 44.21 2.41
7151 9352 0.035820 GTTCTCCACATGCCCGGTAA 60.036 55.000 0.00 0.00 0.00 2.85
7180 9381 2.363788 TCGCTCACTGTTATGTCCAC 57.636 50.000 0.00 0.00 0.00 4.02
7257 9458 0.039708 GCTCCAGTTTCACTGCTTGC 60.040 55.000 0.00 0.00 44.63 4.01
7334 9535 3.452264 TGGATGGGTAGATGACTTGTCTG 59.548 47.826 2.35 0.00 0.00 3.51
7347 9548 1.985159 ACACTTTCTGCTGGATGGGTA 59.015 47.619 0.00 0.00 0.00 3.69
7395 9596 0.394216 ATGCGCTGTTATTGCCTGGA 60.394 50.000 9.73 0.00 0.00 3.86
7511 9713 2.098614 TGAAACAAAGCAGTTCAGCCA 58.901 42.857 0.00 0.00 34.23 4.75
7538 9791 7.930217 TCTCTTTCACAAACATTTCAACCTAG 58.070 34.615 0.00 0.00 0.00 3.02
7631 9884 2.680339 GTGCTTCATAACCTTCTCTGCC 59.320 50.000 0.00 0.00 0.00 4.85
7703 9956 2.503920 ACTGCAGAGCAAGCTTTTTG 57.496 45.000 23.35 0.00 38.41 2.44
7813 10066 3.482786 GTGTAGAGTTTGCGAATTGCTG 58.517 45.455 0.00 0.00 46.63 4.41
7913 10167 8.515473 CGATGATAAAATTTGTTCTACTTTGCG 58.485 33.333 0.00 0.00 0.00 4.85
7924 10178 9.086336 CATAAAACTGCCGATGATAAAATTTGT 57.914 29.630 0.00 0.00 0.00 2.83
7941 10195 3.682858 CACGTCCCCTGTACATAAAACTG 59.317 47.826 0.00 0.00 0.00 3.16
7944 10198 2.303600 AGCACGTCCCCTGTACATAAAA 59.696 45.455 0.00 0.00 0.00 1.52
8003 10257 3.012959 TCTCTCTGAACTGGGTCCCTATT 59.987 47.826 10.00 2.97 0.00 1.73
8005 10259 2.000803 TCTCTCTGAACTGGGTCCCTA 58.999 52.381 10.00 0.00 0.00 3.53
8006 10260 0.787084 TCTCTCTGAACTGGGTCCCT 59.213 55.000 10.00 0.00 0.00 4.20
8012 10266 3.870274 TGCAATGATCTCTCTGAACTGG 58.130 45.455 0.00 0.00 0.00 4.00
8013 10267 5.674068 GCTTTGCAATGATCTCTCTGAACTG 60.674 44.000 15.97 0.00 0.00 3.16
8042 10296 1.848652 ACCCACGCTCACTAGTATGT 58.151 50.000 0.00 0.00 0.00 2.29
8046 10300 0.602905 GCAAACCCACGCTCACTAGT 60.603 55.000 0.00 0.00 0.00 2.57
8047 10301 0.602638 TGCAAACCCACGCTCACTAG 60.603 55.000 0.00 0.00 0.00 2.57
8048 10302 0.179043 TTGCAAACCCACGCTCACTA 60.179 50.000 0.00 0.00 0.00 2.74
8049 10303 1.453015 TTGCAAACCCACGCTCACT 60.453 52.632 0.00 0.00 0.00 3.41
8071 10325 0.373716 GCCGCACTGAATTTCCGTAG 59.626 55.000 0.00 0.00 0.00 3.51
8074 10328 2.485122 GGCCGCACTGAATTTCCG 59.515 61.111 0.00 0.00 0.00 4.30
8089 10343 0.096454 GGAGAAAACATACGCACGGC 59.904 55.000 0.00 0.00 0.00 5.68
8092 10346 1.127951 CACGGGAGAAAACATACGCAC 59.872 52.381 0.00 0.00 0.00 5.34
8101 10355 5.217978 ACATAGTACAACACGGGAGAAAA 57.782 39.130 0.00 0.00 0.00 2.29
8110 10364 6.752335 TTCACGTGTTACATAGTACAACAC 57.248 37.500 16.51 13.44 45.41 3.32
8113 10367 7.767745 TGTTTTCACGTGTTACATAGTACAA 57.232 32.000 16.51 0.00 0.00 2.41
8118 10372 8.555166 AATTGTTGTTTTCACGTGTTACATAG 57.445 30.769 16.51 0.00 0.00 2.23
8129 10389 5.236047 TGCAGCCATAAATTGTTGTTTTCAC 59.764 36.000 0.00 0.00 0.00 3.18
8396 10656 2.974698 GTGGTGCTGCACTTCGCT 60.975 61.111 29.54 0.00 43.06 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.