Multiple sequence alignment - TraesCS3A01G286200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G286200 chr3A 100.000 3809 0 0 1552 5360 514499071 514495263 0.000000e+00 7035
1 TraesCS3A01G286200 chr3A 100.000 1262 0 0 1 1262 514500622 514499361 0.000000e+00 2331
2 TraesCS3A01G286200 chr3A 96.154 208 4 3 1 206 213178594 213178389 2.390000e-88 337
3 TraesCS3A01G286200 chr3A 96.517 201 4 2 1 199 501246743 501246942 4.000000e-86 329
4 TraesCS3A01G286200 chr3A 96.500 200 4 2 1 198 360204494 360204296 1.440000e-85 327
5 TraesCS3A01G286200 chr3B 91.452 1357 62 14 1635 2951 519416796 519415454 0.000000e+00 1814
6 TraesCS3A01G286200 chr3B 90.749 854 42 13 4521 5360 519402438 519401608 0.000000e+00 1105
7 TraesCS3A01G286200 chr3B 93.318 449 15 6 820 1262 519417354 519416915 0.000000e+00 649
8 TraesCS3A01G286200 chr3B 91.045 469 33 5 2966 3430 519415469 519415006 4.560000e-175 625
9 TraesCS3A01G286200 chr3B 80.716 503 75 10 198 680 519420118 519419618 6.560000e-99 372
10 TraesCS3A01G286200 chr3D 91.206 1012 66 13 3504 4508 395042546 395041551 0.000000e+00 1354
11 TraesCS3A01G286200 chr3D 94.271 803 37 6 4565 5360 395041529 395040729 0.000000e+00 1219
12 TraesCS3A01G286200 chr3D 88.425 838 66 14 1775 2588 395044464 395043634 0.000000e+00 981
13 TraesCS3A01G286200 chr3D 92.308 416 29 3 2966 3379 395043198 395042784 5.980000e-164 588
14 TraesCS3A01G286200 chr3D 88.843 484 42 11 324 801 395046256 395045779 7.740000e-163 584
15 TraesCS3A01G286200 chr3D 90.112 445 20 15 820 1262 395045790 395045368 1.690000e-154 556
16 TraesCS3A01G286200 chr3D 91.165 249 21 1 2586 2833 395043607 395043359 2.390000e-88 337
17 TraesCS3A01G286200 chr3D 90.517 116 9 2 2838 2951 395043297 395043182 9.300000e-33 152
18 TraesCS3A01G286200 chr7A 97.015 201 3 2 1 199 168308388 168308189 8.600000e-88 335
19 TraesCS3A01G286200 chr6A 97.015 201 3 2 1 199 270559769 270559570 8.600000e-88 335
20 TraesCS3A01G286200 chr6A 96.517 201 4 2 1 199 489009506 489009705 4.000000e-86 329
21 TraesCS3A01G286200 chr5A 96.500 200 4 2 1 198 429955183 429955381 1.440000e-85 327
22 TraesCS3A01G286200 chr2A 96.500 200 4 2 1 198 661086977 661086779 1.440000e-85 327
23 TraesCS3A01G286200 chr1A 96.020 201 5 2 1 199 372752132 372752331 1.860000e-84 324


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G286200 chr3A 514495263 514500622 5359 True 4683.000 7035 100.000000 1 5360 2 chr3A.!!$R3 5359
1 TraesCS3A01G286200 chr3B 519401608 519402438 830 True 1105.000 1105 90.749000 4521 5360 1 chr3B.!!$R1 839
2 TraesCS3A01G286200 chr3B 519415006 519420118 5112 True 865.000 1814 89.132750 198 3430 4 chr3B.!!$R2 3232
3 TraesCS3A01G286200 chr3D 395040729 395046256 5527 True 721.375 1354 90.855875 324 5360 8 chr3D.!!$R1 5036


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
805 2984 0.242825 CCCAAGTCTCGTCGTTGCTA 59.757 55.000 0.00 0.00 0.00 3.49 F
807 2986 1.068472 CCAAGTCTCGTCGTTGCTACT 60.068 52.381 0.00 0.00 0.00 2.57 F
875 3056 1.418755 GATTGGCCGAACGACGAAC 59.581 57.895 0.00 0.00 45.77 3.95 F
964 3157 1.520787 CACGAATACCACCGAGGGC 60.521 63.158 0.00 0.00 43.89 5.19 F
1984 4893 1.661112 GTCCAGAAGCTCGCATGTAAC 59.339 52.381 0.00 0.00 0.00 2.50 F
3641 6823 0.103572 AGCCTGCAGTGCAAACTTTG 59.896 50.000 20.22 6.02 38.41 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1625 3818 1.140312 AGGCACAAGAAGGAACAGGA 58.860 50.00 0.0 0.0 0.00 3.86 R
2463 5393 2.435372 TGCCAACCTGACTTCAAAGT 57.565 45.00 0.0 0.0 43.16 2.66 R
2834 5804 0.585357 GTGCGATCTATGCAGCCTTG 59.415 55.00 0.0 0.0 44.21 3.61 R
2918 5947 5.136068 TCATATCAATGGGGTAAAAGCCA 57.864 39.13 0.0 0.0 37.54 4.75 R
3967 7149 0.035739 GAGTTGTTTGGCGGTAGGGA 59.964 55.00 0.0 0.0 0.00 4.20 R
4517 7699 0.384725 CAGTGCGAACTTTGGAAGCG 60.385 55.00 0.0 0.0 0.00 4.68 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.516198 AAAATGAAATGTAGAGTCTTGTGCT 57.484 32.000 0.00 0.00 0.00 4.40
27 28 7.516198 AAATGAAATGTAGAGTCTTGTGCTT 57.484 32.000 0.00 0.00 0.00 3.91
28 29 7.516198 AATGAAATGTAGAGTCTTGTGCTTT 57.484 32.000 0.00 0.00 0.00 3.51
29 30 6.304356 TGAAATGTAGAGTCTTGTGCTTTG 57.696 37.500 0.00 0.00 0.00 2.77
30 31 6.054941 TGAAATGTAGAGTCTTGTGCTTTGA 58.945 36.000 0.00 0.00 0.00 2.69
31 32 6.203530 TGAAATGTAGAGTCTTGTGCTTTGAG 59.796 38.462 0.00 0.00 0.00 3.02
32 33 3.393800 TGTAGAGTCTTGTGCTTTGAGC 58.606 45.455 0.00 0.00 42.82 4.26
33 34 2.926778 AGAGTCTTGTGCTTTGAGCT 57.073 45.000 1.29 0.00 42.97 4.09
34 35 3.205784 AGAGTCTTGTGCTTTGAGCTT 57.794 42.857 1.29 0.00 42.97 3.74
35 36 2.877168 AGAGTCTTGTGCTTTGAGCTTG 59.123 45.455 1.29 0.00 42.97 4.01
36 37 2.874701 GAGTCTTGTGCTTTGAGCTTGA 59.125 45.455 1.29 0.00 42.97 3.02
37 38 2.877168 AGTCTTGTGCTTTGAGCTTGAG 59.123 45.455 1.29 0.00 42.97 3.02
38 39 1.605710 TCTTGTGCTTTGAGCTTGAGC 59.394 47.619 9.26 9.26 42.97 4.26
39 40 0.670162 TTGTGCTTTGAGCTTGAGCC 59.330 50.000 12.50 6.50 42.97 4.70
40 41 0.466007 TGTGCTTTGAGCTTGAGCCA 60.466 50.000 12.50 8.41 42.97 4.75
41 42 0.670162 GTGCTTTGAGCTTGAGCCAA 59.330 50.000 12.50 1.54 42.97 4.52
42 43 1.271656 GTGCTTTGAGCTTGAGCCAAT 59.728 47.619 12.50 0.00 42.97 3.16
43 44 1.542915 TGCTTTGAGCTTGAGCCAATC 59.457 47.619 12.50 0.00 42.97 2.67
44 45 1.135170 GCTTTGAGCTTGAGCCAATCC 60.135 52.381 0.00 0.00 43.38 3.01
45 46 2.444421 CTTTGAGCTTGAGCCAATCCT 58.556 47.619 0.00 0.00 43.38 3.24
46 47 2.592102 TTGAGCTTGAGCCAATCCTT 57.408 45.000 0.00 0.00 43.38 3.36
47 48 2.592102 TGAGCTTGAGCCAATCCTTT 57.408 45.000 0.00 0.00 43.38 3.11
48 49 2.880443 TGAGCTTGAGCCAATCCTTTT 58.120 42.857 0.00 0.00 43.38 2.27
49 50 2.559668 TGAGCTTGAGCCAATCCTTTTG 59.440 45.455 0.00 0.00 43.38 2.44
50 51 1.897802 AGCTTGAGCCAATCCTTTTGG 59.102 47.619 0.00 0.00 43.38 3.28
57 58 2.967599 CCAATCCTTTTGGCCTTAGC 57.032 50.000 3.32 0.00 40.12 3.09
58 59 2.178580 CCAATCCTTTTGGCCTTAGCA 58.821 47.619 3.32 0.00 42.56 3.49
59 60 2.767960 CCAATCCTTTTGGCCTTAGCAT 59.232 45.455 3.32 0.00 42.56 3.79
60 61 3.198417 CCAATCCTTTTGGCCTTAGCATT 59.802 43.478 3.32 0.00 42.56 3.56
61 62 4.323715 CCAATCCTTTTGGCCTTAGCATTT 60.324 41.667 3.32 0.00 42.56 2.32
62 63 5.247862 CAATCCTTTTGGCCTTAGCATTTT 58.752 37.500 3.32 0.00 42.56 1.82
63 64 4.270245 TCCTTTTGGCCTTAGCATTTTG 57.730 40.909 3.32 0.00 42.56 2.44
64 65 3.900601 TCCTTTTGGCCTTAGCATTTTGA 59.099 39.130 3.32 0.00 42.56 2.69
65 66 4.021192 TCCTTTTGGCCTTAGCATTTTGAG 60.021 41.667 3.32 0.00 42.56 3.02
66 67 3.959535 TTTGGCCTTAGCATTTTGAGG 57.040 42.857 3.32 0.00 42.56 3.86
67 68 1.851304 TGGCCTTAGCATTTTGAGGG 58.149 50.000 3.32 0.00 42.56 4.30
68 69 1.114627 GGCCTTAGCATTTTGAGGGG 58.885 55.000 0.00 0.00 42.56 4.79
69 70 1.619704 GGCCTTAGCATTTTGAGGGGT 60.620 52.381 0.00 0.00 42.56 4.95
70 71 1.751351 GCCTTAGCATTTTGAGGGGTC 59.249 52.381 0.00 0.00 39.53 4.46
71 72 2.379005 CCTTAGCATTTTGAGGGGTCC 58.621 52.381 0.00 0.00 0.00 4.46
72 73 2.291540 CCTTAGCATTTTGAGGGGTCCA 60.292 50.000 0.00 0.00 0.00 4.02
73 74 2.507407 TAGCATTTTGAGGGGTCCAC 57.493 50.000 0.00 0.00 0.00 4.02
74 75 0.779997 AGCATTTTGAGGGGTCCACT 59.220 50.000 0.00 0.00 0.00 4.00
75 76 1.147817 AGCATTTTGAGGGGTCCACTT 59.852 47.619 0.00 0.00 0.00 3.16
76 77 1.970640 GCATTTTGAGGGGTCCACTTT 59.029 47.619 0.00 0.00 0.00 2.66
77 78 3.161866 GCATTTTGAGGGGTCCACTTTA 58.838 45.455 0.00 0.00 0.00 1.85
78 79 3.576550 GCATTTTGAGGGGTCCACTTTAA 59.423 43.478 0.00 0.00 0.00 1.52
79 80 4.222810 GCATTTTGAGGGGTCCACTTTAAT 59.777 41.667 0.00 0.00 0.00 1.40
80 81 5.624509 GCATTTTGAGGGGTCCACTTTAATC 60.625 44.000 0.00 0.00 0.00 1.75
81 82 3.732048 TTGAGGGGTCCACTTTAATCC 57.268 47.619 0.00 0.00 0.00 3.01
82 83 2.638325 TGAGGGGTCCACTTTAATCCA 58.362 47.619 0.00 0.00 0.00 3.41
83 84 3.197983 TGAGGGGTCCACTTTAATCCAT 58.802 45.455 0.00 0.00 0.00 3.41
84 85 3.053693 TGAGGGGTCCACTTTAATCCATG 60.054 47.826 0.00 0.00 0.00 3.66
85 86 2.031870 GGGGTCCACTTTAATCCATGC 58.968 52.381 0.00 0.00 0.00 4.06
86 87 2.031870 GGGTCCACTTTAATCCATGCC 58.968 52.381 0.00 0.00 0.00 4.40
87 88 2.622977 GGGTCCACTTTAATCCATGCCA 60.623 50.000 0.00 0.00 0.00 4.92
88 89 3.299503 GGTCCACTTTAATCCATGCCAT 58.700 45.455 0.00 0.00 0.00 4.40
89 90 3.706086 GGTCCACTTTAATCCATGCCATT 59.294 43.478 0.00 0.00 0.00 3.16
90 91 4.441913 GGTCCACTTTAATCCATGCCATTG 60.442 45.833 0.00 0.00 0.00 2.82
91 92 3.132646 TCCACTTTAATCCATGCCATTGC 59.867 43.478 0.00 0.00 38.26 3.56
92 93 3.460103 CACTTTAATCCATGCCATTGCC 58.540 45.455 0.00 0.00 36.33 4.52
93 94 3.106054 ACTTTAATCCATGCCATTGCCA 58.894 40.909 0.00 0.00 36.33 4.92
94 95 3.518705 ACTTTAATCCATGCCATTGCCAA 59.481 39.130 0.00 0.00 36.33 4.52
95 96 4.164604 ACTTTAATCCATGCCATTGCCAAT 59.835 37.500 0.00 0.00 36.33 3.16
96 97 2.922740 AATCCATGCCATTGCCAATC 57.077 45.000 0.00 0.00 36.33 2.67
97 98 1.796017 ATCCATGCCATTGCCAATCA 58.204 45.000 0.00 0.00 36.33 2.57
98 99 1.796017 TCCATGCCATTGCCAATCAT 58.204 45.000 0.00 0.00 36.33 2.45
99 100 2.120312 TCCATGCCATTGCCAATCATT 58.880 42.857 0.00 0.00 36.33 2.57
100 101 2.158885 TCCATGCCATTGCCAATCATTG 60.159 45.455 0.00 0.00 36.33 2.82
101 102 2.158885 CCATGCCATTGCCAATCATTGA 60.159 45.455 0.00 0.00 36.33 2.57
102 103 2.971660 TGCCATTGCCAATCATTGAG 57.028 45.000 0.00 0.00 36.33 3.02
103 104 1.134640 TGCCATTGCCAATCATTGAGC 60.135 47.619 0.00 1.36 36.33 4.26
104 105 1.138266 GCCATTGCCAATCATTGAGCT 59.862 47.619 0.00 0.00 0.00 4.09
105 106 2.419574 GCCATTGCCAATCATTGAGCTT 60.420 45.455 0.00 0.00 0.00 3.74
106 107 3.869065 CCATTGCCAATCATTGAGCTTT 58.131 40.909 0.00 0.00 0.00 3.51
107 108 4.258543 CCATTGCCAATCATTGAGCTTTT 58.741 39.130 0.00 0.00 0.00 2.27
108 109 4.331717 CCATTGCCAATCATTGAGCTTTTC 59.668 41.667 0.00 0.00 0.00 2.29
109 110 4.603989 TTGCCAATCATTGAGCTTTTCA 57.396 36.364 0.00 0.00 0.00 2.69
110 111 4.811969 TGCCAATCATTGAGCTTTTCAT 57.188 36.364 0.00 0.00 35.27 2.57
111 112 4.500127 TGCCAATCATTGAGCTTTTCATG 58.500 39.130 0.00 0.00 35.27 3.07
112 113 4.221041 TGCCAATCATTGAGCTTTTCATGA 59.779 37.500 0.00 0.00 35.27 3.07
113 114 5.172934 GCCAATCATTGAGCTTTTCATGAA 58.827 37.500 3.38 3.38 35.27 2.57
114 115 5.640357 GCCAATCATTGAGCTTTTCATGAAA 59.360 36.000 16.91 16.91 35.27 2.69
115 116 6.315393 GCCAATCATTGAGCTTTTCATGAAAT 59.685 34.615 21.10 7.09 35.27 2.17
116 117 7.493320 GCCAATCATTGAGCTTTTCATGAAATA 59.507 33.333 21.10 11.27 35.27 1.40
117 118 9.542462 CCAATCATTGAGCTTTTCATGAAATAT 57.458 29.630 21.10 10.35 35.27 1.28
163 164 8.893219 CTCAATGAGCTATATGTTGTTAGGAA 57.107 34.615 0.00 0.00 0.00 3.36
164 165 9.499479 CTCAATGAGCTATATGTTGTTAGGAAT 57.501 33.333 0.00 0.00 0.00 3.01
165 166 9.851686 TCAATGAGCTATATGTTGTTAGGAATT 57.148 29.630 0.00 0.00 0.00 2.17
168 169 9.726438 ATGAGCTATATGTTGTTAGGAATTACC 57.274 33.333 0.00 0.00 39.35 2.85
169 170 8.710239 TGAGCTATATGTTGTTAGGAATTACCA 58.290 33.333 0.00 0.00 42.04 3.25
170 171 9.555727 GAGCTATATGTTGTTAGGAATTACCAA 57.444 33.333 0.00 0.00 42.04 3.67
171 172 9.914834 AGCTATATGTTGTTAGGAATTACCAAA 57.085 29.630 0.00 0.00 42.04 3.28
175 176 7.604657 ATGTTGTTAGGAATTACCAAAACCA 57.395 32.000 0.00 0.00 42.04 3.67
176 177 6.807789 TGTTGTTAGGAATTACCAAAACCAC 58.192 36.000 0.00 0.00 42.04 4.16
177 178 6.608002 TGTTGTTAGGAATTACCAAAACCACT 59.392 34.615 0.00 0.00 42.04 4.00
178 179 6.887626 TGTTAGGAATTACCAAAACCACTC 57.112 37.500 0.00 0.00 42.04 3.51
179 180 6.366340 TGTTAGGAATTACCAAAACCACTCA 58.634 36.000 0.00 0.00 42.04 3.41
180 181 6.488683 TGTTAGGAATTACCAAAACCACTCAG 59.511 38.462 0.00 0.00 42.04 3.35
181 182 4.407365 AGGAATTACCAAAACCACTCAGG 58.593 43.478 0.00 0.00 42.06 3.86
182 183 3.509967 GGAATTACCAAAACCACTCAGGG 59.490 47.826 0.00 0.00 39.31 4.45
183 184 4.403734 GAATTACCAAAACCACTCAGGGA 58.596 43.478 0.00 0.00 43.89 4.20
184 185 4.675063 ATTACCAAAACCACTCAGGGAT 57.325 40.909 0.00 0.00 43.89 3.85
185 186 5.789574 ATTACCAAAACCACTCAGGGATA 57.210 39.130 0.00 0.00 43.89 2.59
186 187 3.721087 ACCAAAACCACTCAGGGATAG 57.279 47.619 0.00 0.00 43.89 2.08
187 188 2.986728 ACCAAAACCACTCAGGGATAGT 59.013 45.455 0.00 0.00 43.89 2.12
188 189 3.397955 ACCAAAACCACTCAGGGATAGTT 59.602 43.478 0.00 0.00 43.89 2.24
189 190 3.758554 CCAAAACCACTCAGGGATAGTTG 59.241 47.826 0.00 0.00 43.89 3.16
190 191 2.789409 AACCACTCAGGGATAGTTGC 57.211 50.000 0.00 0.00 43.89 4.17
191 192 1.656587 ACCACTCAGGGATAGTTGCA 58.343 50.000 0.00 0.00 43.89 4.08
192 193 1.279271 ACCACTCAGGGATAGTTGCAC 59.721 52.381 0.00 0.00 43.89 4.57
193 194 1.556911 CCACTCAGGGATAGTTGCACT 59.443 52.381 0.00 0.00 0.00 4.40
194 195 2.026822 CCACTCAGGGATAGTTGCACTT 60.027 50.000 0.00 0.00 0.00 3.16
195 196 3.560025 CCACTCAGGGATAGTTGCACTTT 60.560 47.826 0.00 0.00 0.00 2.66
196 197 3.686726 CACTCAGGGATAGTTGCACTTTC 59.313 47.826 0.00 0.00 0.00 2.62
197 198 3.327757 ACTCAGGGATAGTTGCACTTTCA 59.672 43.478 0.00 0.00 29.36 2.69
198 199 4.202461 ACTCAGGGATAGTTGCACTTTCAA 60.202 41.667 0.00 0.00 29.36 2.69
199 200 4.072131 TCAGGGATAGTTGCACTTTCAAC 58.928 43.478 0.00 0.00 44.88 3.18
200 201 3.191371 CAGGGATAGTTGCACTTTCAACC 59.809 47.826 3.34 0.00 45.47 3.77
201 202 3.153919 GGGATAGTTGCACTTTCAACCA 58.846 45.455 3.34 0.00 45.47 3.67
202 203 3.191371 GGGATAGTTGCACTTTCAACCAG 59.809 47.826 3.34 0.00 45.47 4.00
203 204 3.191371 GGATAGTTGCACTTTCAACCAGG 59.809 47.826 3.34 0.00 45.47 4.45
204 205 0.746659 AGTTGCACTTTCAACCAGGC 59.253 50.000 3.34 0.00 45.47 4.85
205 206 0.459489 GTTGCACTTTCAACCAGGCA 59.541 50.000 0.00 0.00 40.18 4.75
206 207 1.134848 GTTGCACTTTCAACCAGGCAA 60.135 47.619 0.00 0.00 40.18 4.52
207 208 1.412079 TGCACTTTCAACCAGGCAAT 58.588 45.000 0.00 0.00 0.00 3.56
208 209 1.761784 TGCACTTTCAACCAGGCAATT 59.238 42.857 0.00 0.00 0.00 2.32
209 210 2.961741 TGCACTTTCAACCAGGCAATTA 59.038 40.909 0.00 0.00 0.00 1.40
210 211 3.243704 TGCACTTTCAACCAGGCAATTAC 60.244 43.478 0.00 0.00 0.00 1.89
211 212 3.005791 GCACTTTCAACCAGGCAATTACT 59.994 43.478 0.00 0.00 0.00 2.24
212 213 4.501400 GCACTTTCAACCAGGCAATTACTT 60.501 41.667 0.00 0.00 0.00 2.24
221 222 1.670811 AGGCAATTACTTCCATTCGCG 59.329 47.619 0.00 0.00 0.00 5.87
249 250 1.265905 GTCCGTGCCAAAGAAAATCGT 59.734 47.619 0.00 0.00 0.00 3.73
253 254 2.676076 GTGCCAAAGAAAATCGTGCAT 58.324 42.857 0.00 0.00 0.00 3.96
275 291 2.180946 TGAGGATCACAGGGCATAGT 57.819 50.000 0.00 0.00 42.56 2.12
337 353 2.787249 CCAGACAAGCGCCAATCG 59.213 61.111 2.29 0.00 42.12 3.34
345 361 2.828549 GCGCCAATCGTTCCCCAT 60.829 61.111 0.00 0.00 41.07 4.00
356 372 0.908198 GTTCCCCATGAGAGAGCAGT 59.092 55.000 0.00 0.00 0.00 4.40
373 389 3.002583 TGATGCTCGCCAGGTGGA 61.003 61.111 0.00 0.00 37.39 4.02
390 406 3.135530 GGTGGAAAGTCTGCTCTCCATAT 59.864 47.826 0.00 0.00 40.03 1.78
401 417 2.045524 CTCTCCATATGCTCCACCAGT 58.954 52.381 0.00 0.00 0.00 4.00
403 419 1.764723 CTCCATATGCTCCACCAGTGA 59.235 52.381 0.00 0.00 0.00 3.41
435 451 0.811616 GTCCGAGCCCTTGCACATAG 60.812 60.000 0.00 0.00 41.13 2.23
442 458 0.461548 CCCTTGCACATAGAGAGCGA 59.538 55.000 0.00 0.00 36.53 4.93
460 476 3.117046 GCGACAAGCCTACATAGAAGAC 58.883 50.000 0.00 0.00 40.81 3.01
462 478 3.491104 CGACAAGCCTACATAGAAGACCC 60.491 52.174 0.00 0.00 0.00 4.46
464 480 2.693591 CAAGCCTACATAGAAGACCCGA 59.306 50.000 0.00 0.00 0.00 5.14
471 487 5.581085 CCTACATAGAAGACCCGAAAAGTTG 59.419 44.000 0.00 0.00 0.00 3.16
477 493 1.684983 AGACCCGAAAAGTTGAGACGA 59.315 47.619 0.00 0.00 0.00 4.20
478 494 2.299297 AGACCCGAAAAGTTGAGACGAT 59.701 45.455 0.00 0.00 0.00 3.73
501 518 1.528292 GGCGAGCTCCGTGGAGATAT 61.528 60.000 19.98 4.35 41.31 1.63
511 528 2.484651 CCGTGGAGATATCGTCGATCTT 59.515 50.000 11.82 0.24 33.71 2.40
540 557 0.667993 TCAGCCTTTTGAAAGCCACG 59.332 50.000 0.00 0.00 34.69 4.94
542 559 0.755327 AGCCTTTTGAAAGCCACGGT 60.755 50.000 0.00 0.00 34.69 4.83
558 575 0.661020 CGGTCCAACCAAACACTCAC 59.339 55.000 0.00 0.00 38.47 3.51
583 600 2.286025 ACACAAACGAAGGAAAGTACGC 59.714 45.455 0.00 0.00 0.00 4.42
584 601 2.542595 CACAAACGAAGGAAAGTACGCT 59.457 45.455 0.00 0.00 0.00 5.07
585 602 2.798847 ACAAACGAAGGAAAGTACGCTC 59.201 45.455 0.00 0.00 0.00 5.03
586 603 1.694639 AACGAAGGAAAGTACGCTCG 58.305 50.000 0.00 0.00 0.00 5.03
587 604 0.595095 ACGAAGGAAAGTACGCTCGT 59.405 50.000 0.00 0.00 34.89 4.18
601 618 4.322101 ACGCTCGTTACAATGTTTGATC 57.678 40.909 0.00 0.00 0.00 2.92
611 628 7.267600 CGTTACAATGTTTGATCGAAAGTAACC 59.732 37.037 21.34 12.53 36.89 2.85
624 641 6.618811 TCGAAAGTAACCATGTACTTCTCTC 58.381 40.000 8.68 3.83 42.25 3.20
716 1483 7.218773 CGAAGGTACAATGTGCAAATCAATTAG 59.781 37.037 3.55 0.00 0.00 1.73
721 1488 7.355332 ACAATGTGCAAATCAATTAGCTTTC 57.645 32.000 0.00 0.00 0.00 2.62
734 2912 5.588958 ATTAGCTTTCTCCCTGCAATTTC 57.411 39.130 0.00 0.00 0.00 2.17
779 2958 3.123959 ACATTAAACGAACCAATCCGACG 59.876 43.478 0.00 0.00 0.00 5.12
783 2962 1.142474 ACGAACCAATCCGACGAAAC 58.858 50.000 0.00 0.00 0.00 2.78
795 2974 3.582743 ACGAAACGTCCCAAGTCTC 57.417 52.632 0.00 0.00 33.69 3.36
796 2975 0.318445 ACGAAACGTCCCAAGTCTCG 60.318 55.000 0.00 0.00 33.69 4.04
797 2976 0.318445 CGAAACGTCCCAAGTCTCGT 60.318 55.000 0.00 0.00 38.15 4.18
798 2977 1.416373 GAAACGTCCCAAGTCTCGTC 58.584 55.000 0.00 0.00 35.49 4.20
799 2978 0.318445 AAACGTCCCAAGTCTCGTCG 60.318 55.000 0.00 0.00 35.49 5.12
800 2979 1.450531 AACGTCCCAAGTCTCGTCGT 61.451 55.000 0.00 0.00 35.49 4.34
801 2980 1.285023 CGTCCCAAGTCTCGTCGTT 59.715 57.895 0.00 0.00 0.00 3.85
802 2981 1.002250 CGTCCCAAGTCTCGTCGTTG 61.002 60.000 0.00 0.00 0.00 4.10
803 2982 1.006571 TCCCAAGTCTCGTCGTTGC 60.007 57.895 0.00 0.00 0.00 4.17
804 2983 1.006102 CCCAAGTCTCGTCGTTGCT 60.006 57.895 0.00 0.00 0.00 3.91
805 2984 0.242825 CCCAAGTCTCGTCGTTGCTA 59.757 55.000 0.00 0.00 0.00 3.49
806 2985 1.337821 CCAAGTCTCGTCGTTGCTAC 58.662 55.000 0.00 0.00 0.00 3.58
807 2986 1.068472 CCAAGTCTCGTCGTTGCTACT 60.068 52.381 0.00 0.00 0.00 2.57
808 2987 2.607282 CCAAGTCTCGTCGTTGCTACTT 60.607 50.000 0.00 0.00 0.00 2.24
809 2988 3.050619 CAAGTCTCGTCGTTGCTACTTT 58.949 45.455 0.00 0.00 0.00 2.66
810 2989 3.366440 AGTCTCGTCGTTGCTACTTTT 57.634 42.857 0.00 0.00 0.00 2.27
811 2990 4.494350 AGTCTCGTCGTTGCTACTTTTA 57.506 40.909 0.00 0.00 0.00 1.52
812 2991 4.863491 AGTCTCGTCGTTGCTACTTTTAA 58.137 39.130 0.00 0.00 0.00 1.52
813 2992 5.284079 AGTCTCGTCGTTGCTACTTTTAAA 58.716 37.500 0.00 0.00 0.00 1.52
814 2993 5.750067 AGTCTCGTCGTTGCTACTTTTAAAA 59.250 36.000 0.00 0.00 0.00 1.52
815 2994 6.256321 AGTCTCGTCGTTGCTACTTTTAAAAA 59.744 34.615 1.66 0.00 0.00 1.94
848 3029 4.501559 CGTCGTTGTTGTTTAGACTTCAGA 59.498 41.667 0.00 0.00 0.00 3.27
850 3031 6.292168 CGTCGTTGTTGTTTAGACTTCAGATT 60.292 38.462 0.00 0.00 0.00 2.40
851 3032 7.064064 GTCGTTGTTGTTTAGACTTCAGATTC 58.936 38.462 0.00 0.00 0.00 2.52
852 3033 6.759356 TCGTTGTTGTTTAGACTTCAGATTCA 59.241 34.615 0.00 0.00 0.00 2.57
853 3034 7.042725 TCGTTGTTGTTTAGACTTCAGATTCAG 60.043 37.037 0.00 0.00 0.00 3.02
854 3035 7.355778 GTTGTTGTTTAGACTTCAGATTCAGG 58.644 38.462 0.00 0.00 0.00 3.86
855 3036 5.470098 TGTTGTTTAGACTTCAGATTCAGGC 59.530 40.000 0.00 0.00 0.00 4.85
856 3037 4.579869 TGTTTAGACTTCAGATTCAGGCC 58.420 43.478 0.00 0.00 0.00 5.19
857 3038 3.526931 TTAGACTTCAGATTCAGGCCG 57.473 47.619 0.00 0.00 0.00 6.13
858 3039 1.561643 AGACTTCAGATTCAGGCCGA 58.438 50.000 0.00 0.00 0.00 5.54
859 3040 2.114616 AGACTTCAGATTCAGGCCGAT 58.885 47.619 0.00 0.00 0.00 4.18
860 3041 2.503356 AGACTTCAGATTCAGGCCGATT 59.497 45.455 0.00 0.00 0.00 3.34
875 3056 1.418755 GATTGGCCGAACGACGAAC 59.581 57.895 0.00 0.00 45.77 3.95
906 3087 6.701841 CAGCTTTCAGTTTACTGTAGAAGTCA 59.298 38.462 9.53 0.00 44.12 3.41
907 3088 7.224753 CAGCTTTCAGTTTACTGTAGAAGTCAA 59.775 37.037 9.53 0.00 44.12 3.18
935 3116 5.004448 TGACTCTCACTCTTTCACGAGTAT 58.996 41.667 0.00 0.00 42.10 2.12
964 3157 1.520787 CACGAATACCACCGAGGGC 60.521 63.158 0.00 0.00 43.89 5.19
1579 3772 3.596214 GGTCAAGATTGAGAGCGGTTAA 58.404 45.455 0.00 0.00 37.98 2.01
1599 3792 6.630045 GGTTAACCGATTATTACGAAATGTGC 59.370 38.462 9.34 0.00 0.00 4.57
1600 3793 4.446857 ACCGATTATTACGAAATGTGCG 57.553 40.909 0.00 0.00 0.00 5.34
1601 3794 3.866910 ACCGATTATTACGAAATGTGCGT 59.133 39.130 0.00 0.00 45.01 5.24
1602 3795 4.330620 ACCGATTATTACGAAATGTGCGTT 59.669 37.500 0.00 0.00 42.62 4.84
1603 3796 5.163834 ACCGATTATTACGAAATGTGCGTTT 60.164 36.000 0.00 0.00 42.62 3.60
1604 3797 5.735427 CCGATTATTACGAAATGTGCGTTTT 59.265 36.000 0.00 0.00 42.62 2.43
1605 3798 6.249682 CCGATTATTACGAAATGTGCGTTTTT 59.750 34.615 0.00 0.00 42.62 1.94
1625 3818 5.622346 TTTTTAGGGGAAATGTGTGCTTT 57.378 34.783 0.00 0.00 0.00 3.51
1633 3826 3.552890 GGAAATGTGTGCTTTCCTGTTCC 60.553 47.826 7.07 0.00 45.39 3.62
1643 3868 1.981256 TTCCTGTTCCTTCTTGTGCC 58.019 50.000 0.00 0.00 0.00 5.01
1727 4601 4.038763 CAGAGGCATTCACCAATATTGCAT 59.961 41.667 10.11 0.00 35.04 3.96
1728 4602 5.242171 CAGAGGCATTCACCAATATTGCATA 59.758 40.000 10.11 0.00 35.04 3.14
1729 4603 5.475909 AGAGGCATTCACCAATATTGCATAG 59.524 40.000 10.11 0.00 35.04 2.23
1730 4604 4.021719 AGGCATTCACCAATATTGCATAGC 60.022 41.667 10.11 8.25 35.04 2.97
1731 4605 4.262121 GGCATTCACCAATATTGCATAGCA 60.262 41.667 10.11 0.00 36.47 3.49
1732 4606 5.475719 GCATTCACCAATATTGCATAGCAT 58.524 37.500 10.11 0.00 38.76 3.79
1762 4636 5.134202 TGTACTTGTGTGACTGTCCTATG 57.866 43.478 5.17 0.00 0.00 2.23
1802 4711 5.416639 TGAGCTGCATTTTCAGTACATCATT 59.583 36.000 1.02 0.00 36.49 2.57
1984 4893 1.661112 GTCCAGAAGCTCGCATGTAAC 59.339 52.381 0.00 0.00 0.00 2.50
2018 4927 6.444633 CATTTGCCATAATGTTCATCTCTCC 58.555 40.000 0.00 0.00 32.17 3.71
2019 4928 5.378230 TTGCCATAATGTTCATCTCTCCT 57.622 39.130 0.00 0.00 0.00 3.69
2254 5183 7.781324 ATTGAGGAAATGGTCAGTTTATTGT 57.219 32.000 0.00 0.00 0.00 2.71
2266 5195 7.126726 TGGTCAGTTTATTGTACCTAGCCTATT 59.873 37.037 0.00 0.00 0.00 1.73
2267 5196 7.991460 GGTCAGTTTATTGTACCTAGCCTATTT 59.009 37.037 0.00 0.00 0.00 1.40
2268 5197 8.827677 GTCAGTTTATTGTACCTAGCCTATTTG 58.172 37.037 0.00 0.00 0.00 2.32
2269 5198 8.764558 TCAGTTTATTGTACCTAGCCTATTTGA 58.235 33.333 0.00 0.00 0.00 2.69
2295 5224 6.594788 ACCAAATCAAAGATGCTAACACAT 57.405 33.333 0.00 0.00 0.00 3.21
2403 5333 4.385358 TTCTTTGGACTTTCAGTTTGGC 57.615 40.909 0.00 0.00 0.00 4.52
2419 5349 7.105588 TCAGTTTGGCGATATGCTTATATGAT 58.894 34.615 0.00 0.00 45.43 2.45
2463 5393 8.783093 GCTATGAATAATGTACCTGCATGTTTA 58.217 33.333 0.00 0.00 0.00 2.01
2554 5484 8.006298 TGTTATGAAAGTCTCAACATTGGTTT 57.994 30.769 0.00 0.00 37.67 3.27
2609 5569 6.012858 TGGGTTAAATGTCAGGTCTATCTGTT 60.013 38.462 0.00 0.00 36.25 3.16
2674 5634 3.005539 GGGACTCTGGCTGCTGGA 61.006 66.667 0.00 0.00 0.00 3.86
2687 5647 3.397482 GCTGCTGGAAGGTATGTAGATG 58.603 50.000 0.00 0.00 0.00 2.90
2739 5699 4.442706 ACTGGTACTAATGCAGCATACAC 58.557 43.478 8.75 4.33 0.00 2.90
2744 5704 4.743057 ACTAATGCAGCATACACAGAGA 57.257 40.909 8.75 0.00 0.00 3.10
2808 5778 2.035193 CCGGAGATATGGTGAGTGTCTG 59.965 54.545 0.00 0.00 0.00 3.51
2814 5784 4.774726 AGATATGGTGAGTGTCTGTTCTGT 59.225 41.667 0.00 0.00 0.00 3.41
2829 5799 4.343231 TGTTCTGTACCCATGAATGCAAT 58.657 39.130 0.00 0.00 0.00 3.56
2852 5880 2.996444 CAAGGCTGCATAGATCGCA 58.004 52.632 0.50 0.00 37.88 5.10
2889 5917 7.598869 TGCTTCTATTACTTACAGTGTCACAAG 59.401 37.037 0.00 0.21 0.00 3.16
2918 5947 8.517878 CAAGAAATGGTGATAACAGTGAAGAAT 58.482 33.333 0.00 0.00 0.00 2.40
2952 5982 9.039165 ACCCCATTGATATGATGATTTTAATCC 57.961 33.333 0.32 0.00 32.56 3.01
2953 5983 8.480501 CCCCATTGATATGATGATTTTAATCCC 58.519 37.037 0.32 0.00 32.56 3.85
2954 5984 8.480501 CCCATTGATATGATGATTTTAATCCCC 58.519 37.037 0.32 0.00 32.56 4.81
2955 5985 9.263446 CCATTGATATGATGATTTTAATCCCCT 57.737 33.333 0.32 0.00 32.56 4.79
2957 5987 8.565896 TTGATATGATGATTTTAATCCCCTCG 57.434 34.615 0.32 0.00 34.50 4.63
2958 5988 7.917003 TGATATGATGATTTTAATCCCCTCGA 58.083 34.615 0.32 0.00 34.50 4.04
2959 5989 8.382405 TGATATGATGATTTTAATCCCCTCGAA 58.618 33.333 0.32 0.00 34.50 3.71
2960 5990 9.231297 GATATGATGATTTTAATCCCCTCGAAA 57.769 33.333 0.32 0.00 34.50 3.46
2961 5991 7.896383 ATGATGATTTTAATCCCCTCGAAAA 57.104 32.000 0.32 0.00 34.50 2.29
2962 5992 7.710676 TGATGATTTTAATCCCCTCGAAAAA 57.289 32.000 0.32 0.00 34.50 1.94
3085 6115 4.992951 GCTTTGGATGCAGAAAGTTTGAAT 59.007 37.500 14.00 0.00 32.68 2.57
3109 6139 2.301870 TGGAGAACAGGTATGTGGTGTC 59.698 50.000 0.00 0.00 40.39 3.67
3115 6145 1.198759 AGGTATGTGGTGTCGCCCTT 61.199 55.000 0.00 0.00 36.04 3.95
3122 6152 2.502130 TGTGGTGTCGCCCTTGATATAA 59.498 45.455 0.00 0.00 36.04 0.98
3145 6175 4.993028 AGTAATGGCACTTCCCTGTTTTA 58.007 39.130 0.00 0.00 0.00 1.52
3157 6187 4.016444 TCCCTGTTTTATGGTTGATGAGC 58.984 43.478 0.00 0.00 0.00 4.26
3168 6198 2.866762 GGTTGATGAGCGTGGATAAGAC 59.133 50.000 0.00 0.00 0.00 3.01
3169 6199 3.521560 GTTGATGAGCGTGGATAAGACA 58.478 45.455 0.00 0.00 0.00 3.41
3183 6213 6.659242 GTGGATAAGACAATTTCCTTCCAGAA 59.341 38.462 0.00 0.00 31.14 3.02
3239 6269 3.181496 GGAAATTGTCCGGAGAATCTTGC 60.181 47.826 25.55 20.62 36.40 4.01
3310 6340 5.878406 AACTAGAGACCCCATACATTCTG 57.122 43.478 0.00 0.00 0.00 3.02
3325 6355 7.201732 CCATACATTCTGAAGTATGTTGTTCCC 60.202 40.741 23.18 0.00 43.70 3.97
3332 6362 5.795972 TGAAGTATGTTGTTCCCGTTATCA 58.204 37.500 0.00 0.00 0.00 2.15
3334 6364 6.537301 TGAAGTATGTTGTTCCCGTTATCATC 59.463 38.462 0.00 0.00 0.00 2.92
3358 6388 8.044060 TCCACTACTTTATCATGCAAAGAAAG 57.956 34.615 20.14 14.52 36.65 2.62
3359 6389 7.665559 TCCACTACTTTATCATGCAAAGAAAGT 59.334 33.333 21.46 21.46 41.77 2.66
3360 6390 7.965107 CCACTACTTTATCATGCAAAGAAAGTC 59.035 37.037 21.40 0.00 40.08 3.01
3381 6414 5.003804 GTCCTTCTCCTGAATTGCTTACAA 58.996 41.667 0.00 0.00 40.87 2.41
3382 6415 5.473504 GTCCTTCTCCTGAATTGCTTACAAA 59.526 40.000 0.00 0.00 39.77 2.83
3384 6417 7.336931 GTCCTTCTCCTGAATTGCTTACAAATA 59.663 37.037 0.00 0.00 39.77 1.40
3390 6423 7.839907 TCCTGAATTGCTTACAAATATGCTTT 58.160 30.769 0.00 0.00 39.77 3.51
3396 6429 8.830201 ATTGCTTACAAATATGCTTTGTTGAA 57.170 26.923 7.74 0.00 42.10 2.69
3434 6467 8.314751 ACTGTAGTTATTGATGAGTAAAGCTGT 58.685 33.333 0.00 0.00 0.00 4.40
3461 6494 5.164606 TCGACAAAAAGAGCACCTTAAAC 57.835 39.130 0.00 0.00 34.00 2.01
3471 6504 6.002062 AGAGCACCTTAAACAAGAAAATCG 57.998 37.500 0.00 0.00 0.00 3.34
3474 6507 4.679654 GCACCTTAAACAAGAAAATCGTGG 59.320 41.667 0.00 0.00 30.01 4.94
3484 6517 6.659824 ACAAGAAAATCGTGGGACCTTATAT 58.340 36.000 0.00 0.00 30.01 0.86
3486 6519 7.614192 ACAAGAAAATCGTGGGACCTTATATTT 59.386 33.333 0.00 0.00 30.01 1.40
3487 6520 9.116067 CAAGAAAATCGTGGGACCTTATATTTA 57.884 33.333 0.00 0.00 0.00 1.40
3490 6523 8.446599 AAAATCGTGGGACCTTATATTTACTG 57.553 34.615 0.00 0.00 0.00 2.74
3491 6524 6.742559 ATCGTGGGACCTTATATTTACTGT 57.257 37.500 0.00 0.00 0.00 3.55
3494 6527 5.751990 CGTGGGACCTTATATTTACTGTGTC 59.248 44.000 0.00 0.00 0.00 3.67
3495 6528 6.406624 CGTGGGACCTTATATTTACTGTGTCT 60.407 42.308 0.00 0.00 0.00 3.41
3496 6529 7.336396 GTGGGACCTTATATTTACTGTGTCTT 58.664 38.462 0.00 0.00 0.00 3.01
3497 6530 7.280205 GTGGGACCTTATATTTACTGTGTCTTG 59.720 40.741 0.00 0.00 0.00 3.02
3498 6531 7.037873 TGGGACCTTATATTTACTGTGTCTTGT 60.038 37.037 0.00 0.00 0.00 3.16
3502 6535 9.832445 ACCTTATATTTACTGTGTCTTGTATGG 57.168 33.333 0.00 0.00 0.00 2.74
3571 6751 2.818751 ACTAGAGGACCTCTGACCAG 57.181 55.000 30.88 22.38 41.37 4.00
3591 6772 6.131961 ACCAGAAATATCTTGCTAGCCAATT 58.868 36.000 13.29 2.01 32.03 2.32
3594 6775 6.263842 CAGAAATATCTTGCTAGCCAATTCCA 59.736 38.462 13.29 0.00 32.03 3.53
3595 6776 7.008941 AGAAATATCTTGCTAGCCAATTCCAT 58.991 34.615 13.29 0.00 31.91 3.41
3596 6777 6.585695 AATATCTTGCTAGCCAATTCCATG 57.414 37.500 13.29 0.00 31.91 3.66
3641 6823 0.103572 AGCCTGCAGTGCAAACTTTG 59.896 50.000 20.22 6.02 38.41 2.77
3657 6839 2.299297 ACTTTGCAGAGTACTAAGCGGT 59.701 45.455 8.37 9.24 0.00 5.68
3665 6847 5.811100 GCAGAGTACTAAGCGGTCTTAATTT 59.189 40.000 0.00 0.00 34.62 1.82
3666 6848 6.019720 GCAGAGTACTAAGCGGTCTTAATTTC 60.020 42.308 0.00 0.00 34.62 2.17
3707 6889 6.700352 TGAAAATGAATGGAATGGTTCTTCC 58.300 36.000 0.00 0.00 44.23 3.46
3717 6899 2.943036 TGGTTCTTCCCTTAGCGTTT 57.057 45.000 0.00 0.00 34.77 3.60
3750 6932 5.957842 TTTCCATCTCACTTTGCGTTTAT 57.042 34.783 0.00 0.00 0.00 1.40
3761 6943 4.094887 ACTTTGCGTTTATACATGAGCTGG 59.905 41.667 0.00 0.00 0.00 4.85
3762 6944 1.939934 TGCGTTTATACATGAGCTGGC 59.060 47.619 0.00 0.00 0.00 4.85
3780 6962 3.230134 TGGCAGCTATTCAAACCAAACT 58.770 40.909 0.00 0.00 0.00 2.66
3789 6971 6.582672 GCTATTCAAACCAAACTTAACTGCTC 59.417 38.462 0.00 0.00 0.00 4.26
3797 6979 5.408604 ACCAAACTTAACTGCTCAGTATTCG 59.591 40.000 2.62 0.00 41.58 3.34
3810 6992 3.926527 TCAGTATTCGCACAACTGTCATC 59.073 43.478 0.00 0.00 41.12 2.92
3814 6996 4.566545 ATTCGCACAACTGTCATCAAAA 57.433 36.364 0.00 0.00 0.00 2.44
3825 7007 5.776744 ACTGTCATCAAAAGGCTTGATTTC 58.223 37.500 0.00 0.00 37.06 2.17
3827 7009 6.041296 ACTGTCATCAAAAGGCTTGATTTCTT 59.959 34.615 0.00 0.00 37.06 2.52
3828 7010 6.819284 TGTCATCAAAAGGCTTGATTTCTTT 58.181 32.000 0.00 0.00 37.06 2.52
3833 7015 5.504392 CAAAAGGCTTGATTTCTTTTGTGC 58.496 37.500 15.46 0.00 45.70 4.57
3835 7017 5.789643 AAGGCTTGATTTCTTTTGTGCTA 57.210 34.783 0.00 0.00 0.00 3.49
3853 7035 3.244875 TGCTACCAGGACATTTCACATGT 60.245 43.478 0.00 0.00 34.52 3.21
3872 7054 3.358118 TGTTGGTGATGCATCATGATGT 58.642 40.909 30.89 16.63 40.80 3.06
3885 7067 5.581479 GCATCATGATGTATCACCTGATCTC 59.419 44.000 31.09 10.22 40.03 2.75
3894 7076 4.543590 ATCACCTGATCTCGAAACAGTT 57.456 40.909 10.65 0.00 0.00 3.16
3903 7085 6.227522 TGATCTCGAAACAGTTGGTATCAAA 58.772 36.000 0.00 0.00 34.28 2.69
3931 7113 2.249309 AATCTTCCAGGTACCCTCGT 57.751 50.000 8.74 0.00 0.00 4.18
3943 7125 5.878116 CAGGTACCCTCGTCAATGAAAATTA 59.122 40.000 8.74 0.00 0.00 1.40
3947 7129 6.254281 ACCCTCGTCAATGAAAATTAAGTG 57.746 37.500 0.00 0.00 0.00 3.16
3949 7131 6.072673 ACCCTCGTCAATGAAAATTAAGTGAC 60.073 38.462 1.79 1.79 33.62 3.67
3951 7133 7.017645 CCTCGTCAATGAAAATTAAGTGACAG 58.982 38.462 10.69 7.37 36.10 3.51
3954 7136 6.086765 CGTCAATGAAAATTAAGTGACAGTGC 59.913 38.462 10.69 0.00 36.10 4.40
3958 7140 6.403866 TGAAAATTAAGTGACAGTGCCATT 57.596 33.333 0.00 0.00 0.00 3.16
3959 7141 6.446318 TGAAAATTAAGTGACAGTGCCATTC 58.554 36.000 0.00 0.00 0.00 2.67
3960 7142 6.265196 TGAAAATTAAGTGACAGTGCCATTCT 59.735 34.615 0.00 0.00 0.00 2.40
3961 7143 6.655078 AAATTAAGTGACAGTGCCATTCTT 57.345 33.333 0.00 0.00 0.00 2.52
3962 7144 6.655078 AATTAAGTGACAGTGCCATTCTTT 57.345 33.333 0.00 0.00 0.00 2.52
3963 7145 6.655078 ATTAAGTGACAGTGCCATTCTTTT 57.345 33.333 0.00 0.00 0.00 2.27
3964 7146 6.463995 TTAAGTGACAGTGCCATTCTTTTT 57.536 33.333 0.00 0.00 0.00 1.94
3965 7147 7.575414 TTAAGTGACAGTGCCATTCTTTTTA 57.425 32.000 0.00 0.00 0.00 1.52
3966 7148 6.463995 AAGTGACAGTGCCATTCTTTTTAA 57.536 33.333 0.00 0.00 0.00 1.52
3967 7149 6.655078 AGTGACAGTGCCATTCTTTTTAAT 57.345 33.333 0.00 0.00 0.00 1.40
3968 7150 6.681777 AGTGACAGTGCCATTCTTTTTAATC 58.318 36.000 0.00 0.00 0.00 1.75
3969 7151 5.863935 GTGACAGTGCCATTCTTTTTAATCC 59.136 40.000 0.00 0.00 0.00 3.01
4004 7186 5.765182 ACAACTCCTTTTCTGACTTGTATGG 59.235 40.000 0.00 0.00 0.00 2.74
4005 7187 5.568620 ACTCCTTTTCTGACTTGTATGGT 57.431 39.130 0.00 0.00 0.00 3.55
4060 7242 1.227999 ACTGGTCGTGGATGTTTGCG 61.228 55.000 0.00 0.00 0.00 4.85
4069 7251 3.006940 GTGGATGTTTGCGAGGTCATTA 58.993 45.455 0.00 0.00 0.00 1.90
4070 7252 3.063997 GTGGATGTTTGCGAGGTCATTAG 59.936 47.826 0.00 0.00 0.00 1.73
4074 7256 1.804151 GTTTGCGAGGTCATTAGCACA 59.196 47.619 0.00 0.00 39.51 4.57
4080 7262 0.685097 AGGTCATTAGCACACGTGGT 59.315 50.000 21.57 7.11 44.31 4.16
4167 7349 3.982058 CCGATAAGCGAAGGACAGTAATC 59.018 47.826 0.00 0.00 44.57 1.75
4176 7358 0.804933 GGACAGTAATCGCCGTGGAC 60.805 60.000 0.00 0.00 0.00 4.02
4209 7391 9.505995 GTCTACAAGTACTATACTTTCTTCAGC 57.494 37.037 0.00 0.00 46.27 4.26
4210 7392 8.396390 TCTACAAGTACTATACTTTCTTCAGCG 58.604 37.037 0.00 0.00 46.27 5.18
4221 7403 0.108472 TCTTCAGCGAGTGCATGGAG 60.108 55.000 0.00 0.00 46.23 3.86
4251 7433 1.771255 AGTGATATGCTTGGGGAGGAC 59.229 52.381 0.00 0.00 0.00 3.85
4272 7454 1.303317 GGCACCCTCGGTTGTGATT 60.303 57.895 0.00 0.00 31.02 2.57
4427 7609 3.243839 ACCACAACATTCATCAAACTGCC 60.244 43.478 0.00 0.00 0.00 4.85
4428 7610 3.006110 CCACAACATTCATCAAACTGCCT 59.994 43.478 0.00 0.00 0.00 4.75
4434 7616 2.936919 TCATCAAACTGCCTCAGTGT 57.063 45.000 0.00 0.00 44.62 3.55
4439 7621 1.242076 AAACTGCCTCAGTGTGATGC 58.758 50.000 0.00 0.00 44.62 3.91
4446 7628 2.286294 GCCTCAGTGTGATGCTAATTCG 59.714 50.000 0.00 0.00 35.54 3.34
4447 7629 3.785486 CCTCAGTGTGATGCTAATTCGA 58.215 45.455 0.00 0.00 0.00 3.71
4485 7667 7.750229 AATAGACATTGCATATGGAATTCGT 57.250 32.000 18.75 14.63 33.70 3.85
4490 7672 2.209273 TGCATATGGAATTCGTGGACG 58.791 47.619 4.56 0.00 41.45 4.79
4508 7690 1.001624 CGATTCGCTCATGTCAGCAA 58.998 50.000 7.14 1.74 39.62 3.91
4509 7691 1.267235 CGATTCGCTCATGTCAGCAAC 60.267 52.381 7.14 0.00 39.62 4.17
4510 7692 2.005451 GATTCGCTCATGTCAGCAACT 58.995 47.619 7.14 0.00 39.62 3.16
4512 7694 0.318120 TCGCTCATGTCAGCAACTCA 59.682 50.000 7.14 0.00 39.62 3.41
4513 7695 0.720027 CGCTCATGTCAGCAACTCAG 59.280 55.000 7.14 0.00 39.62 3.35
4515 7697 1.804601 CTCATGTCAGCAACTCAGCA 58.195 50.000 0.00 0.00 36.85 4.41
4516 7698 2.357075 CTCATGTCAGCAACTCAGCAT 58.643 47.619 0.00 0.00 36.85 3.79
4517 7699 2.352034 CTCATGTCAGCAACTCAGCATC 59.648 50.000 0.00 0.00 36.85 3.91
4520 7702 1.018226 GTCAGCAACTCAGCATCGCT 61.018 55.000 0.00 0.00 40.77 4.93
4521 7703 0.321034 TCAGCAACTCAGCATCGCTT 60.321 50.000 0.00 0.00 36.40 4.68
4522 7704 0.096628 CAGCAACTCAGCATCGCTTC 59.903 55.000 0.00 0.00 36.40 3.86
4524 7706 1.300971 GCAACTCAGCATCGCTTCCA 61.301 55.000 0.00 0.00 36.40 3.53
4532 7714 0.794605 GCATCGCTTCCAAAGTTCGC 60.795 55.000 0.00 0.00 0.00 4.70
4535 7717 0.531974 TCGCTTCCAAAGTTCGCACT 60.532 50.000 0.00 0.00 33.11 4.40
4536 7718 0.384725 CGCTTCCAAAGTTCGCACTG 60.385 55.000 0.00 0.00 31.60 3.66
4557 7739 3.440522 TGGAGTCATCGACAGAGTGTTAG 59.559 47.826 2.04 0.00 34.60 2.34
4564 7746 5.650703 TCATCGACAGAGTGTTAGAACCATA 59.349 40.000 0.00 0.00 0.00 2.74
4565 7747 6.321435 TCATCGACAGAGTGTTAGAACCATAT 59.679 38.462 0.00 0.00 0.00 1.78
4575 7757 8.336801 AGTGTTAGAACCATATGGAGAAAAAC 57.663 34.615 28.77 21.45 38.94 2.43
4583 7765 7.781324 ACCATATGGAGAAAAACTTTCATGT 57.219 32.000 28.77 0.00 38.94 3.21
4609 7791 3.626670 GGTAGAGAAGACGAGGAATCGAA 59.373 47.826 4.44 0.00 36.85 3.71
4655 7837 1.144969 GTTCTTCATTCACGTCGGCA 58.855 50.000 0.00 0.00 0.00 5.69
4680 7862 1.243902 TGCAACCCTCATTCCGTTTC 58.756 50.000 0.00 0.00 0.00 2.78
4780 7962 8.704849 TTTTATCATTCCCTTTTCTTGTCAGA 57.295 30.769 0.00 0.00 0.00 3.27
4815 7997 5.947228 ACATATATGTGTATGGCTTGTGC 57.053 39.130 17.60 0.00 40.03 4.57
4843 8025 2.487265 GGAATGTGTGTCCAAGGTGTCT 60.487 50.000 0.00 0.00 35.05 3.41
4945 8138 2.414806 GTCCTGTTCGTTCTTTCTCCC 58.585 52.381 0.00 0.00 0.00 4.30
4969 8162 5.545588 GGCCGACATGATATATATGCATCT 58.454 41.667 0.19 0.00 0.00 2.90
4972 8165 6.365518 GCCGACATGATATATATGCATCTCAG 59.634 42.308 0.19 0.00 0.00 3.35
5004 8197 4.065281 GGGCAGCCAGCTTGCTTG 62.065 66.667 15.19 7.17 44.79 4.01
5013 8206 0.240411 CAGCTTGCTTGCCAGTTCTC 59.760 55.000 0.00 0.00 0.00 2.87
5017 8210 0.106769 TTGCTTGCCAGTTCTCCACA 60.107 50.000 0.00 0.00 0.00 4.17
5018 8211 0.535780 TGCTTGCCAGTTCTCCACAG 60.536 55.000 0.00 0.00 0.00 3.66
5030 8223 2.125552 CCACAGCCGAATCGCTCA 60.126 61.111 0.00 0.00 36.82 4.26
5141 8341 4.504916 CGGGAGGAGACGCTGCTG 62.505 72.222 5.68 0.00 30.82 4.41
5246 8446 2.355363 TTCAAGGACGACGTGGCG 60.355 61.111 4.58 0.00 37.29 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.516198 AGCACAAGACTCTACATTTCATTTT 57.484 32.000 0.00 0.00 0.00 1.82
3 4 7.516198 AAGCACAAGACTCTACATTTCATTT 57.484 32.000 0.00 0.00 0.00 2.32
5 6 6.712095 TCAAAGCACAAGACTCTACATTTCAT 59.288 34.615 0.00 0.00 0.00 2.57
6 7 6.054941 TCAAAGCACAAGACTCTACATTTCA 58.945 36.000 0.00 0.00 0.00 2.69
7 8 6.545504 TCAAAGCACAAGACTCTACATTTC 57.454 37.500 0.00 0.00 0.00 2.17
9 10 4.453819 GCTCAAAGCACAAGACTCTACATT 59.546 41.667 0.00 0.00 41.89 2.71
10 11 3.999663 GCTCAAAGCACAAGACTCTACAT 59.000 43.478 0.00 0.00 41.89 2.29
11 12 3.070159 AGCTCAAAGCACAAGACTCTACA 59.930 43.478 1.29 0.00 45.56 2.74
12 13 3.658709 AGCTCAAAGCACAAGACTCTAC 58.341 45.455 1.29 0.00 45.56 2.59
13 14 4.060900 CAAGCTCAAAGCACAAGACTCTA 58.939 43.478 1.29 0.00 45.56 2.43
14 15 2.877168 CAAGCTCAAAGCACAAGACTCT 59.123 45.455 1.29 0.00 45.56 3.24
15 16 2.874701 TCAAGCTCAAAGCACAAGACTC 59.125 45.455 1.29 0.00 45.56 3.36
16 17 2.877168 CTCAAGCTCAAAGCACAAGACT 59.123 45.455 1.29 0.00 45.56 3.24
17 18 2.604132 GCTCAAGCTCAAAGCACAAGAC 60.604 50.000 9.39 0.00 45.56 3.01
18 19 1.605710 GCTCAAGCTCAAAGCACAAGA 59.394 47.619 9.39 0.00 45.56 3.02
19 20 1.335689 GGCTCAAGCTCAAAGCACAAG 60.336 52.381 14.59 0.00 45.56 3.16
20 21 0.670162 GGCTCAAGCTCAAAGCACAA 59.330 50.000 14.59 0.00 45.56 3.33
21 22 0.466007 TGGCTCAAGCTCAAAGCACA 60.466 50.000 14.59 8.73 45.56 4.57
22 23 0.670162 TTGGCTCAAGCTCAAAGCAC 59.330 50.000 14.59 6.79 45.56 4.40
23 24 1.542915 GATTGGCTCAAGCTCAAAGCA 59.457 47.619 14.59 0.00 45.56 3.91
24 25 1.135170 GGATTGGCTCAAGCTCAAAGC 60.135 52.381 1.46 6.43 42.84 3.51
25 26 2.444421 AGGATTGGCTCAAGCTCAAAG 58.556 47.619 1.46 0.00 41.70 2.77
26 27 2.592102 AGGATTGGCTCAAGCTCAAA 57.408 45.000 1.46 0.00 41.70 2.69
27 28 2.592102 AAGGATTGGCTCAAGCTCAA 57.408 45.000 1.46 5.34 41.70 3.02
28 29 2.559668 CAAAAGGATTGGCTCAAGCTCA 59.440 45.455 1.46 0.00 41.70 4.26
29 30 2.094338 CCAAAAGGATTGGCTCAAGCTC 60.094 50.000 1.46 0.00 41.70 4.09
30 31 1.897802 CCAAAAGGATTGGCTCAAGCT 59.102 47.619 1.46 0.00 41.70 3.74
31 32 2.375173 CCAAAAGGATTGGCTCAAGC 57.625 50.000 0.00 0.00 41.14 4.01
38 39 2.178580 TGCTAAGGCCAAAAGGATTGG 58.821 47.619 5.01 2.84 42.37 3.16
39 40 4.476628 AATGCTAAGGCCAAAAGGATTG 57.523 40.909 14.94 0.00 37.74 2.67
40 41 5.012975 TCAAAATGCTAAGGCCAAAAGGATT 59.987 36.000 5.01 9.20 37.74 3.01
41 42 4.531732 TCAAAATGCTAAGGCCAAAAGGAT 59.468 37.500 5.01 2.48 37.74 3.24
42 43 3.900601 TCAAAATGCTAAGGCCAAAAGGA 59.099 39.130 5.01 0.00 37.74 3.36
43 44 4.248058 CTCAAAATGCTAAGGCCAAAAGG 58.752 43.478 5.01 0.00 37.74 3.11
44 45 4.248058 CCTCAAAATGCTAAGGCCAAAAG 58.752 43.478 5.01 0.00 37.74 2.27
45 46 3.007831 CCCTCAAAATGCTAAGGCCAAAA 59.992 43.478 5.01 0.00 37.74 2.44
46 47 2.566724 CCCTCAAAATGCTAAGGCCAAA 59.433 45.455 5.01 0.00 37.74 3.28
47 48 2.178580 CCCTCAAAATGCTAAGGCCAA 58.821 47.619 5.01 0.00 37.74 4.52
48 49 1.619432 CCCCTCAAAATGCTAAGGCCA 60.619 52.381 5.01 0.00 37.74 5.36
49 50 1.114627 CCCCTCAAAATGCTAAGGCC 58.885 55.000 0.00 0.00 37.74 5.19
50 51 1.751351 GACCCCTCAAAATGCTAAGGC 59.249 52.381 0.00 0.00 39.26 4.35
51 52 2.291540 TGGACCCCTCAAAATGCTAAGG 60.292 50.000 0.00 0.00 0.00 2.69
52 53 2.755103 GTGGACCCCTCAAAATGCTAAG 59.245 50.000 0.00 0.00 0.00 2.18
53 54 2.378547 AGTGGACCCCTCAAAATGCTAA 59.621 45.455 0.00 0.00 0.00 3.09
54 55 1.992557 AGTGGACCCCTCAAAATGCTA 59.007 47.619 0.00 0.00 0.00 3.49
55 56 0.779997 AGTGGACCCCTCAAAATGCT 59.220 50.000 0.00 0.00 0.00 3.79
56 57 1.632589 AAGTGGACCCCTCAAAATGC 58.367 50.000 0.00 0.00 0.00 3.56
57 58 5.105351 GGATTAAAGTGGACCCCTCAAAATG 60.105 44.000 0.00 0.00 0.00 2.32
58 59 5.023452 GGATTAAAGTGGACCCCTCAAAAT 58.977 41.667 0.00 0.00 0.00 1.82
59 60 4.140900 TGGATTAAAGTGGACCCCTCAAAA 60.141 41.667 0.00 0.00 0.00 2.44
60 61 3.399644 TGGATTAAAGTGGACCCCTCAAA 59.600 43.478 0.00 0.00 0.00 2.69
61 62 2.990284 TGGATTAAAGTGGACCCCTCAA 59.010 45.455 0.00 0.00 0.00 3.02
62 63 2.638325 TGGATTAAAGTGGACCCCTCA 58.362 47.619 0.00 0.00 0.00 3.86
63 64 3.555966 CATGGATTAAAGTGGACCCCTC 58.444 50.000 0.00 0.00 0.00 4.30
64 65 2.358195 GCATGGATTAAAGTGGACCCCT 60.358 50.000 0.00 0.00 0.00 4.79
65 66 2.031870 GCATGGATTAAAGTGGACCCC 58.968 52.381 0.00 0.00 0.00 4.95
66 67 2.031870 GGCATGGATTAAAGTGGACCC 58.968 52.381 0.00 0.00 0.00 4.46
67 68 2.733956 TGGCATGGATTAAAGTGGACC 58.266 47.619 0.00 0.00 0.00 4.46
68 69 4.685924 CAATGGCATGGATTAAAGTGGAC 58.314 43.478 0.00 0.00 0.00 4.02
69 70 3.132646 GCAATGGCATGGATTAAAGTGGA 59.867 43.478 5.91 0.00 40.72 4.02
70 71 3.460103 GCAATGGCATGGATTAAAGTGG 58.540 45.455 5.91 0.00 40.72 4.00
71 72 3.118702 TGGCAATGGCATGGATTAAAGTG 60.119 43.478 5.05 0.00 43.71 3.16
72 73 3.106054 TGGCAATGGCATGGATTAAAGT 58.894 40.909 5.05 0.00 43.71 2.66
73 74 3.823281 TGGCAATGGCATGGATTAAAG 57.177 42.857 5.05 0.00 43.71 1.85
74 75 4.163649 TGATTGGCAATGGCATGGATTAAA 59.836 37.500 19.07 0.00 43.71 1.52
75 76 3.710165 TGATTGGCAATGGCATGGATTAA 59.290 39.130 19.07 0.00 43.71 1.40
76 77 3.306613 TGATTGGCAATGGCATGGATTA 58.693 40.909 19.07 0.00 43.71 1.75
77 78 2.120312 TGATTGGCAATGGCATGGATT 58.880 42.857 19.07 0.00 43.71 3.01
78 79 1.796017 TGATTGGCAATGGCATGGAT 58.204 45.000 19.07 0.56 43.71 3.41
79 80 1.796017 ATGATTGGCAATGGCATGGA 58.204 45.000 19.07 0.00 43.71 3.41
80 81 2.158885 TCAATGATTGGCAATGGCATGG 60.159 45.455 19.07 13.02 43.71 3.66
81 82 3.130633 CTCAATGATTGGCAATGGCATG 58.869 45.455 19.07 10.91 43.71 4.06
82 83 2.484770 GCTCAATGATTGGCAATGGCAT 60.485 45.455 19.07 12.72 43.71 4.40
83 84 1.134640 GCTCAATGATTGGCAATGGCA 60.135 47.619 19.07 10.79 43.71 4.92
84 85 1.138266 AGCTCAATGATTGGCAATGGC 59.862 47.619 19.07 10.10 40.13 4.40
85 86 3.536956 AAGCTCAATGATTGGCAATGG 57.463 42.857 19.07 4.54 31.84 3.16
86 87 4.932799 TGAAAAGCTCAATGATTGGCAATG 59.067 37.500 19.07 4.68 31.84 2.82
87 88 5.155278 TGAAAAGCTCAATGATTGGCAAT 57.845 34.783 13.54 13.54 31.84 3.56
88 89 4.603989 TGAAAAGCTCAATGATTGGCAA 57.396 36.364 16.88 0.68 31.84 4.52
89 90 4.221041 TCATGAAAAGCTCAATGATTGGCA 59.779 37.500 16.88 0.00 37.67 4.92
90 91 4.751060 TCATGAAAAGCTCAATGATTGGC 58.249 39.130 5.20 7.80 37.67 4.52
91 92 7.843490 ATTTCATGAAAAGCTCAATGATTGG 57.157 32.000 23.91 0.00 37.67 3.16
138 139 8.893219 TTCCTAACAACATATAGCTCATTGAG 57.107 34.615 9.40 9.40 0.00 3.02
139 140 9.851686 AATTCCTAACAACATATAGCTCATTGA 57.148 29.630 0.00 0.00 0.00 2.57
142 143 9.726438 GGTAATTCCTAACAACATATAGCTCAT 57.274 33.333 0.00 0.00 0.00 2.90
143 144 8.710239 TGGTAATTCCTAACAACATATAGCTCA 58.290 33.333 0.00 0.00 37.07 4.26
144 145 9.555727 TTGGTAATTCCTAACAACATATAGCTC 57.444 33.333 0.00 0.00 31.99 4.09
145 146 9.914834 TTTGGTAATTCCTAACAACATATAGCT 57.085 29.630 0.00 0.00 36.92 3.32
149 150 9.315363 TGGTTTTGGTAATTCCTAACAACATAT 57.685 29.630 0.00 0.00 36.92 1.78
150 151 8.578151 GTGGTTTTGGTAATTCCTAACAACATA 58.422 33.333 0.00 0.00 36.92 2.29
151 152 7.289084 AGTGGTTTTGGTAATTCCTAACAACAT 59.711 33.333 14.59 5.56 36.92 2.71
152 153 6.608002 AGTGGTTTTGGTAATTCCTAACAACA 59.392 34.615 14.59 0.00 36.92 3.33
153 154 7.046292 AGTGGTTTTGGTAATTCCTAACAAC 57.954 36.000 0.00 0.00 36.92 3.32
154 155 6.834451 TGAGTGGTTTTGGTAATTCCTAACAA 59.166 34.615 0.00 0.00 35.31 2.83
155 156 6.366340 TGAGTGGTTTTGGTAATTCCTAACA 58.634 36.000 0.00 0.00 35.06 2.41
156 157 6.072119 CCTGAGTGGTTTTGGTAATTCCTAAC 60.072 42.308 0.00 0.00 37.07 2.34
157 158 6.007703 CCTGAGTGGTTTTGGTAATTCCTAA 58.992 40.000 0.00 0.00 37.07 2.69
158 159 5.515886 CCCTGAGTGGTTTTGGTAATTCCTA 60.516 44.000 0.00 0.00 37.07 2.94
159 160 4.407365 CCTGAGTGGTTTTGGTAATTCCT 58.593 43.478 0.00 0.00 37.07 3.36
160 161 3.509967 CCCTGAGTGGTTTTGGTAATTCC 59.490 47.826 0.00 0.00 0.00 3.01
161 162 4.403734 TCCCTGAGTGGTTTTGGTAATTC 58.596 43.478 0.00 0.00 0.00 2.17
162 163 4.463050 TCCCTGAGTGGTTTTGGTAATT 57.537 40.909 0.00 0.00 0.00 1.40
163 164 4.675063 ATCCCTGAGTGGTTTTGGTAAT 57.325 40.909 0.00 0.00 0.00 1.89
164 165 4.600111 ACTATCCCTGAGTGGTTTTGGTAA 59.400 41.667 0.00 0.00 0.00 2.85
165 166 4.172807 ACTATCCCTGAGTGGTTTTGGTA 58.827 43.478 0.00 0.00 0.00 3.25
166 167 2.986728 ACTATCCCTGAGTGGTTTTGGT 59.013 45.455 0.00 0.00 0.00 3.67
167 168 3.721087 ACTATCCCTGAGTGGTTTTGG 57.279 47.619 0.00 0.00 0.00 3.28
168 169 3.191371 GCAACTATCCCTGAGTGGTTTTG 59.809 47.826 0.00 0.00 0.00 2.44
169 170 3.181434 TGCAACTATCCCTGAGTGGTTTT 60.181 43.478 0.00 0.00 0.00 2.43
170 171 2.375174 TGCAACTATCCCTGAGTGGTTT 59.625 45.455 0.00 0.00 0.00 3.27
171 172 1.985159 TGCAACTATCCCTGAGTGGTT 59.015 47.619 0.00 0.00 0.00 3.67
172 173 1.279271 GTGCAACTATCCCTGAGTGGT 59.721 52.381 0.00 0.00 0.00 4.16
173 174 2.029838 GTGCAACTATCCCTGAGTGG 57.970 55.000 0.00 0.00 0.00 4.00
186 187 0.459489 TGCCTGGTTGAAAGTGCAAC 59.541 50.000 0.00 0.00 45.62 4.17
187 188 1.189752 TTGCCTGGTTGAAAGTGCAA 58.810 45.000 0.00 0.00 36.46 4.08
188 189 1.412079 ATTGCCTGGTTGAAAGTGCA 58.588 45.000 0.00 0.00 0.00 4.57
189 190 2.531522 AATTGCCTGGTTGAAAGTGC 57.468 45.000 0.00 0.00 0.00 4.40
190 191 4.853924 AGTAATTGCCTGGTTGAAAGTG 57.146 40.909 0.00 0.00 0.00 3.16
191 192 4.280929 GGAAGTAATTGCCTGGTTGAAAGT 59.719 41.667 0.00 0.00 0.00 2.66
192 193 4.280677 TGGAAGTAATTGCCTGGTTGAAAG 59.719 41.667 0.00 0.00 0.00 2.62
193 194 4.219115 TGGAAGTAATTGCCTGGTTGAAA 58.781 39.130 0.00 0.00 0.00 2.69
194 195 3.838565 TGGAAGTAATTGCCTGGTTGAA 58.161 40.909 0.00 0.00 0.00 2.69
195 196 3.517296 TGGAAGTAATTGCCTGGTTGA 57.483 42.857 0.00 0.00 0.00 3.18
196 197 4.675146 CGAATGGAAGTAATTGCCTGGTTG 60.675 45.833 0.00 0.00 0.00 3.77
197 198 3.443681 CGAATGGAAGTAATTGCCTGGTT 59.556 43.478 0.00 0.00 0.00 3.67
198 199 3.016736 CGAATGGAAGTAATTGCCTGGT 58.983 45.455 0.00 0.00 0.00 4.00
199 200 2.223572 GCGAATGGAAGTAATTGCCTGG 60.224 50.000 0.00 0.00 0.00 4.45
200 201 2.539547 CGCGAATGGAAGTAATTGCCTG 60.540 50.000 0.00 0.00 0.00 4.85
201 202 1.670811 CGCGAATGGAAGTAATTGCCT 59.329 47.619 0.00 0.00 0.00 4.75
202 203 1.400494 ACGCGAATGGAAGTAATTGCC 59.600 47.619 15.93 0.00 0.00 4.52
203 204 2.705154 GACGCGAATGGAAGTAATTGC 58.295 47.619 15.93 0.00 0.00 3.56
204 205 2.845764 GCGACGCGAATGGAAGTAATTG 60.846 50.000 15.93 0.00 0.00 2.32
205 206 1.326548 GCGACGCGAATGGAAGTAATT 59.673 47.619 15.93 0.00 0.00 1.40
206 207 0.928229 GCGACGCGAATGGAAGTAAT 59.072 50.000 15.93 0.00 0.00 1.89
207 208 2.365823 GCGACGCGAATGGAAGTAA 58.634 52.632 15.93 0.00 0.00 2.24
208 209 4.082192 GCGACGCGAATGGAAGTA 57.918 55.556 15.93 0.00 0.00 2.24
227 228 0.596082 ATTTTCTTTGGCACGGACGG 59.404 50.000 0.00 0.00 0.00 4.79
249 250 1.142262 CCCTGTGATCCTCATCATGCA 59.858 52.381 0.00 0.00 41.26 3.96
253 254 1.514983 ATGCCCTGTGATCCTCATCA 58.485 50.000 0.00 0.00 36.62 3.07
275 291 1.067295 ACCTTCTCTTGACCATGGCA 58.933 50.000 13.04 8.31 0.00 4.92
282 298 0.322008 CCCCTGCACCTTCTCTTGAC 60.322 60.000 0.00 0.00 0.00 3.18
283 299 2.069776 CCCCTGCACCTTCTCTTGA 58.930 57.895 0.00 0.00 0.00 3.02
286 302 2.530151 TGCCCCTGCACCTTCTCT 60.530 61.111 0.00 0.00 44.23 3.10
320 336 1.577328 AACGATTGGCGCTTGTCTGG 61.577 55.000 7.64 0.00 46.04 3.86
322 338 1.298859 GGAACGATTGGCGCTTGTCT 61.299 55.000 7.64 0.00 46.04 3.41
337 353 0.908198 ACTGCTCTCTCATGGGGAAC 59.092 55.000 0.00 0.00 0.00 3.62
356 372 2.123248 TTTCCACCTGGCGAGCATCA 62.123 55.000 0.00 0.00 31.98 3.07
373 389 3.181456 GGAGCATATGGAGAGCAGACTTT 60.181 47.826 4.56 0.00 0.00 2.66
390 406 3.053619 TCTCTACTATCACTGGTGGAGCA 60.054 47.826 0.70 0.00 40.06 4.26
401 417 3.244284 GCTCGGACTCCTCTCTACTATCA 60.244 52.174 0.00 0.00 0.00 2.15
403 419 2.039348 GGCTCGGACTCCTCTCTACTAT 59.961 54.545 0.00 0.00 0.00 2.12
435 451 2.619177 TCTATGTAGGCTTGTCGCTCTC 59.381 50.000 0.00 0.00 39.13 3.20
442 458 2.431057 CGGGTCTTCTATGTAGGCTTGT 59.569 50.000 0.00 0.00 0.00 3.16
451 467 5.348997 GTCTCAACTTTTCGGGTCTTCTATG 59.651 44.000 0.00 0.00 0.00 2.23
460 476 3.064207 TCAATCGTCTCAACTTTTCGGG 58.936 45.455 0.00 0.00 0.00 5.14
462 478 3.423645 GCCTCAATCGTCTCAACTTTTCG 60.424 47.826 0.00 0.00 0.00 3.46
464 480 2.480419 CGCCTCAATCGTCTCAACTTTT 59.520 45.455 0.00 0.00 0.00 2.27
471 487 0.593773 GAGCTCGCCTCAATCGTCTC 60.594 60.000 0.00 0.00 40.45 3.36
477 493 2.185350 CACGGAGCTCGCCTCAAT 59.815 61.111 7.83 0.00 42.62 2.57
478 494 4.069232 CCACGGAGCTCGCCTCAA 62.069 66.667 7.83 0.00 42.62 3.02
501 518 3.692593 TGATTGTAGTCCAAGATCGACGA 59.307 43.478 0.00 0.00 36.25 4.20
511 528 4.365514 TCAAAAGGCTGATTGTAGTCCA 57.634 40.909 11.63 0.00 0.00 4.02
540 557 2.052782 AGTGAGTGTTTGGTTGGACC 57.947 50.000 0.00 0.00 39.22 4.46
542 559 4.396790 GTGTTTAGTGAGTGTTTGGTTGGA 59.603 41.667 0.00 0.00 0.00 3.53
558 575 6.124759 CGTACTTTCCTTCGTTTGTGTTTAG 58.875 40.000 0.00 0.00 0.00 1.85
583 600 6.590357 ACTTTCGATCAAACATTGTAACGAG 58.410 36.000 0.00 0.00 34.57 4.18
584 601 6.533819 ACTTTCGATCAAACATTGTAACGA 57.466 33.333 0.00 0.00 0.00 3.85
585 602 7.267600 GGTTACTTTCGATCAAACATTGTAACG 59.732 37.037 0.00 0.00 35.09 3.18
586 603 8.071368 TGGTTACTTTCGATCAAACATTGTAAC 58.929 33.333 0.00 0.00 34.32 2.50
587 604 8.155821 TGGTTACTTTCGATCAAACATTGTAA 57.844 30.769 0.00 0.00 0.00 2.41
601 618 6.622549 AGAGAGAAGTACATGGTTACTTTCG 58.377 40.000 9.42 0.00 36.73 3.46
647 664 9.425893 CTGCATAAAAGATAAGACGTTAATGTG 57.574 33.333 4.71 0.00 0.00 3.21
663 684 7.259882 TGCAAAATACTCCATCTGCATAAAAG 58.740 34.615 0.00 0.00 35.02 2.27
675 697 3.482436 ACCTTCGTTGCAAAATACTCCA 58.518 40.909 0.00 0.00 0.00 3.86
716 1483 3.949842 AAGAAATTGCAGGGAGAAAGC 57.050 42.857 0.00 0.00 0.00 3.51
721 1488 7.874528 ACAAAGATAAAAAGAAATTGCAGGGAG 59.125 33.333 0.00 0.00 0.00 4.30
779 2958 1.416373 GACGAGACTTGGGACGTTTC 58.584 55.000 0.00 0.00 39.04 2.78
783 2962 1.002250 CAACGACGAGACTTGGGACG 61.002 60.000 0.00 0.00 0.00 4.79
789 2968 3.366440 AAAGTAGCAACGACGAGACTT 57.634 42.857 0.00 0.56 0.00 3.01
790 2969 3.366440 AAAAGTAGCAACGACGAGACT 57.634 42.857 0.00 0.00 0.00 3.24
791 2970 5.565723 TTTAAAAGTAGCAACGACGAGAC 57.434 39.130 0.00 0.00 0.00 3.36
792 2971 6.586868 TTTTTAAAAGTAGCAACGACGAGA 57.413 33.333 0.00 0.00 0.00 4.04
816 2995 4.673534 AACAACAACGACGAGACTTTTT 57.326 36.364 0.00 0.00 0.00 1.94
817 2996 4.673534 AAACAACAACGACGAGACTTTT 57.326 36.364 0.00 0.00 0.00 2.27
818 2997 5.005107 GTCTAAACAACAACGACGAGACTTT 59.995 40.000 0.00 0.00 31.47 2.66
855 3036 3.550992 CGTCGTTCGGCCAATCGG 61.551 66.667 2.24 0.00 35.71 4.18
856 3037 2.089936 TTCGTCGTTCGGCCAATCG 61.090 57.895 2.24 3.59 40.32 3.34
857 3038 1.012486 AGTTCGTCGTTCGGCCAATC 61.012 55.000 2.24 0.00 40.32 2.67
858 3039 1.005394 AGTTCGTCGTTCGGCCAAT 60.005 52.632 2.24 0.00 40.32 3.16
859 3040 1.952133 CAGTTCGTCGTTCGGCCAA 60.952 57.895 2.24 0.00 40.32 4.52
860 3041 2.355363 CAGTTCGTCGTTCGGCCA 60.355 61.111 2.24 0.00 40.32 5.36
875 3056 3.499918 CAGTAAACTGAAAGCTGGTCCAG 59.500 47.826 15.15 15.15 46.59 3.86
906 3087 3.132289 TGAAAGAGTGAGAGTCAACCGTT 59.868 43.478 0.00 0.00 0.00 4.44
907 3088 2.693591 TGAAAGAGTGAGAGTCAACCGT 59.306 45.455 0.00 0.00 0.00 4.83
921 3102 6.613233 AGTTGTGACTATACTCGTGAAAGAG 58.387 40.000 0.00 0.00 38.07 2.85
935 3116 4.321452 GGTGGTATTCGTGAGTTGTGACTA 60.321 45.833 0.00 0.00 35.88 2.59
1579 3772 3.866910 ACGCACATTTCGTAATAATCGGT 59.133 39.130 0.00 0.00 38.52 4.69
1603 3796 5.454045 GGAAAGCACACATTTCCCCTAAAAA 60.454 40.000 6.24 0.00 46.67 1.94
1604 3797 4.039852 GGAAAGCACACATTTCCCCTAAAA 59.960 41.667 6.24 0.00 46.67 1.52
1605 3798 3.576550 GGAAAGCACACATTTCCCCTAAA 59.423 43.478 6.24 0.00 46.67 1.85
1606 3799 3.161866 GGAAAGCACACATTTCCCCTAA 58.838 45.455 6.24 0.00 46.67 2.69
1607 3800 2.802719 GGAAAGCACACATTTCCCCTA 58.197 47.619 6.24 0.00 46.67 3.53
1608 3801 1.632589 GGAAAGCACACATTTCCCCT 58.367 50.000 6.24 0.00 46.67 4.79
1625 3818 1.140312 AGGCACAAGAAGGAACAGGA 58.860 50.000 0.00 0.00 0.00 3.86
1727 4601 7.438160 GTCACACAAGTACATATGCTAATGCTA 59.562 37.037 1.58 0.00 40.48 3.49
1728 4602 6.258727 GTCACACAAGTACATATGCTAATGCT 59.741 38.462 1.58 0.00 40.48 3.79
1729 4603 6.258727 AGTCACACAAGTACATATGCTAATGC 59.741 38.462 1.58 0.00 40.20 3.56
1730 4604 7.278646 ACAGTCACACAAGTACATATGCTAATG 59.721 37.037 1.58 0.26 0.00 1.90
1731 4605 7.331026 ACAGTCACACAAGTACATATGCTAAT 58.669 34.615 1.58 0.00 0.00 1.73
1732 4606 6.697395 ACAGTCACACAAGTACATATGCTAA 58.303 36.000 1.58 0.00 0.00 3.09
1762 4636 3.488310 CAGCTCAATTCAACAGTTGCAAC 59.512 43.478 22.17 22.17 0.00 4.17
1802 4711 6.909550 AAATGGTTGCATAAGTGAGGTTAA 57.090 33.333 0.00 0.00 0.00 2.01
2141 5070 6.647895 GGAGAATGTAAAACCGAGTTGTCTTA 59.352 38.462 0.00 0.00 0.00 2.10
2142 5071 5.469084 GGAGAATGTAAAACCGAGTTGTCTT 59.531 40.000 0.00 0.00 0.00 3.01
2146 5075 5.941948 AAGGAGAATGTAAAACCGAGTTG 57.058 39.130 0.00 0.00 0.00 3.16
2187 5116 3.876914 TGATAAGTGTGCCGGATGAAATC 59.123 43.478 5.05 0.00 44.55 2.17
2266 5195 7.984050 TGTTAGCATCTTTGATTTGGTTTTCAA 59.016 29.630 0.00 0.00 0.00 2.69
2267 5196 7.437862 GTGTTAGCATCTTTGATTTGGTTTTCA 59.562 33.333 0.00 0.00 0.00 2.69
2268 5197 7.437862 TGTGTTAGCATCTTTGATTTGGTTTTC 59.562 33.333 0.00 0.00 0.00 2.29
2269 5198 7.271511 TGTGTTAGCATCTTTGATTTGGTTTT 58.728 30.769 0.00 0.00 0.00 2.43
2403 5333 8.929746 ACAGTGACAAATCATATAAGCATATCG 58.070 33.333 0.00 0.00 37.14 2.92
2463 5393 2.435372 TGCCAACCTGACTTCAAAGT 57.565 45.000 0.00 0.00 43.16 2.66
2636 5596 4.119862 CCAACGGTATCATTCACCTACAG 58.880 47.826 0.00 0.00 33.62 2.74
2687 5647 9.025020 CAGTATTACGGCAATCATAGTATCATC 57.975 37.037 0.00 0.00 0.00 2.92
2699 5659 3.541632 CAGTTCCCAGTATTACGGCAAT 58.458 45.455 0.00 0.00 0.00 3.56
2704 5664 4.996788 AGTACCAGTTCCCAGTATTACG 57.003 45.455 0.00 0.00 0.00 3.18
2744 5704 5.120399 CCATTTAGGAATTGCATGTGCATT 58.880 37.500 8.69 2.46 46.01 3.56
2808 5778 4.989279 ATTGCATTCATGGGTACAGAAC 57.011 40.909 0.00 0.00 0.00 3.01
2834 5804 0.585357 GTGCGATCTATGCAGCCTTG 59.415 55.000 0.00 0.00 44.21 3.61
2844 5872 6.371548 AGAAGCAAAATAGTTTGTGCGATCTA 59.628 34.615 16.26 0.00 45.06 1.98
2846 5874 5.393962 AGAAGCAAAATAGTTTGTGCGATC 58.606 37.500 16.26 8.39 45.06 3.69
2882 5910 5.499139 TCACCATTTCTTGTTCTTGTGAC 57.501 39.130 0.00 0.00 0.00 3.67
2889 5917 7.202016 TCACTGTTATCACCATTTCTTGTTC 57.798 36.000 0.00 0.00 0.00 3.18
2918 5947 5.136068 TCATATCAATGGGGTAAAAGCCA 57.864 39.130 0.00 0.00 37.54 4.75
2982 6012 9.624373 TGTTTATTACCTGTTACAAACCAACTA 57.376 29.630 0.00 0.00 0.00 2.24
2983 6013 8.522542 TGTTTATTACCTGTTACAAACCAACT 57.477 30.769 0.00 0.00 0.00 3.16
2984 6014 9.187455 CATGTTTATTACCTGTTACAAACCAAC 57.813 33.333 0.00 0.00 0.00 3.77
3109 6139 5.296813 GCCATTACTTTATATCAAGGGCG 57.703 43.478 1.88 0.00 37.99 6.13
3115 6145 6.998074 CAGGGAAGTGCCATTACTTTATATCA 59.002 38.462 0.00 0.00 40.78 2.15
3122 6152 3.525800 AACAGGGAAGTGCCATTACTT 57.474 42.857 0.00 0.00 43.24 2.24
3145 6175 3.134623 TCTTATCCACGCTCATCAACCAT 59.865 43.478 0.00 0.00 0.00 3.55
3157 6187 4.941263 TGGAAGGAAATTGTCTTATCCACG 59.059 41.667 0.00 0.00 34.30 4.94
3168 6198 6.985188 TCTCGTAATTCTGGAAGGAAATTG 57.015 37.500 0.00 0.00 0.00 2.32
3169 6199 7.168905 ACTTCTCGTAATTCTGGAAGGAAATT 58.831 34.615 0.00 0.00 38.06 1.82
3183 6213 3.833070 ACCAGAGGTCAACTTCTCGTAAT 59.167 43.478 0.00 0.00 35.34 1.89
3187 6217 3.193691 ACATACCAGAGGTCAACTTCTCG 59.806 47.826 0.00 0.00 37.09 4.04
3229 6259 4.057432 GAGCCATCTGTAGCAAGATTCTC 58.943 47.826 0.00 0.00 34.60 2.87
3310 6340 6.018180 GGATGATAACGGGAACAACATACTTC 60.018 42.308 0.00 0.00 0.00 3.01
3325 6355 7.384932 TGCATGATAAAGTAGTGGATGATAACG 59.615 37.037 0.00 0.00 0.00 3.18
3332 6362 8.579850 TTTCTTTGCATGATAAAGTAGTGGAT 57.420 30.769 17.22 0.00 36.69 3.41
3334 6364 7.820648 ACTTTCTTTGCATGATAAAGTAGTGG 58.179 34.615 17.22 10.09 38.31 4.00
3358 6388 4.579869 TGTAAGCAATTCAGGAGAAGGAC 58.420 43.478 0.00 0.00 37.14 3.85
3359 6389 4.908601 TGTAAGCAATTCAGGAGAAGGA 57.091 40.909 0.00 0.00 37.14 3.36
3360 6390 5.964958 TTTGTAAGCAATTCAGGAGAAGG 57.035 39.130 0.00 0.00 37.14 3.46
3426 6459 7.589954 GCTCTTTTTGTCGAATTTACAGCTTTA 59.410 33.333 0.00 0.00 0.00 1.85
3430 6463 5.115622 GTGCTCTTTTTGTCGAATTTACAGC 59.884 40.000 0.00 0.00 0.00 4.40
3434 6467 6.385649 AAGGTGCTCTTTTTGTCGAATTTA 57.614 33.333 0.00 0.00 29.99 1.40
3441 6474 6.560711 TCTTGTTTAAGGTGCTCTTTTTGTC 58.439 36.000 0.00 0.00 36.93 3.18
3461 6494 7.568199 AATATAAGGTCCCACGATTTTCTTG 57.432 36.000 0.00 0.00 0.00 3.02
3471 6504 6.885922 AGACACAGTAAATATAAGGTCCCAC 58.114 40.000 0.00 0.00 0.00 4.61
3484 6517 7.564793 AGCATATCCATACAAGACACAGTAAA 58.435 34.615 0.00 0.00 0.00 2.01
3486 6519 6.731292 AGCATATCCATACAAGACACAGTA 57.269 37.500 0.00 0.00 0.00 2.74
3487 6520 5.620738 AGCATATCCATACAAGACACAGT 57.379 39.130 0.00 0.00 0.00 3.55
3490 6523 7.887381 ACTAGTAGCATATCCATACAAGACAC 58.113 38.462 0.00 0.00 0.00 3.67
3491 6524 8.478775 AACTAGTAGCATATCCATACAAGACA 57.521 34.615 0.00 0.00 0.00 3.41
3494 6527 9.847706 CTGTAACTAGTAGCATATCCATACAAG 57.152 37.037 0.00 0.00 0.00 3.16
3495 6528 9.363401 ACTGTAACTAGTAGCATATCCATACAA 57.637 33.333 0.00 0.00 0.00 2.41
3496 6529 8.935614 ACTGTAACTAGTAGCATATCCATACA 57.064 34.615 0.00 0.00 0.00 2.29
3497 6530 9.011095 TGACTGTAACTAGTAGCATATCCATAC 57.989 37.037 0.00 0.00 0.00 2.39
3498 6531 9.011095 GTGACTGTAACTAGTAGCATATCCATA 57.989 37.037 0.00 0.00 0.00 2.74
3500 6533 7.013369 CAGTGACTGTAACTAGTAGCATATCCA 59.987 40.741 4.01 0.00 0.00 3.41
3501 6534 7.364200 CAGTGACTGTAACTAGTAGCATATCC 58.636 42.308 4.01 0.00 0.00 2.59
3502 6535 6.858993 GCAGTGACTGTAACTAGTAGCATATC 59.141 42.308 14.82 0.76 33.43 1.63
3557 6737 4.889780 AGATATTTCTGGTCAGAGGTCCT 58.110 43.478 0.00 0.00 38.88 3.85
3558 6738 5.363939 CAAGATATTTCTGGTCAGAGGTCC 58.636 45.833 0.75 0.00 38.88 4.46
3571 6751 6.639632 TGGAATTGGCTAGCAAGATATTTC 57.360 37.500 18.24 1.58 0.00 2.17
3591 6772 9.605275 CAAAAACTGAAGATATACTCTCATGGA 57.395 33.333 0.00 0.00 31.03 3.41
3641 6823 2.943449 AAGACCGCTTAGTACTCTGC 57.057 50.000 0.00 4.18 31.07 4.26
3673 6855 9.865321 CATTCCATTCATTTTCATTGACTTACT 57.135 29.630 0.00 0.00 0.00 2.24
3679 6861 7.909518 AGAACCATTCCATTCATTTTCATTGA 58.090 30.769 0.00 0.00 0.00 2.57
3717 6899 9.748708 CAAAGTGAGATGGAAAATTAGTCAAAA 57.251 29.630 0.00 0.00 0.00 2.44
3761 6943 6.363357 CAGTTAAGTTTGGTTTGAATAGCTGC 59.637 38.462 0.00 0.00 0.00 5.25
3762 6944 6.363357 GCAGTTAAGTTTGGTTTGAATAGCTG 59.637 38.462 0.00 0.00 0.00 4.24
3774 6956 5.671329 GCGAATACTGAGCAGTTAAGTTTGG 60.671 44.000 8.60 0.00 42.54 3.28
3775 6957 5.107104 TGCGAATACTGAGCAGTTAAGTTTG 60.107 40.000 8.60 5.00 42.54 2.93
3780 6962 3.920446 TGTGCGAATACTGAGCAGTTAA 58.080 40.909 8.60 0.00 41.93 2.01
3789 6971 3.679502 TGATGACAGTTGTGCGAATACTG 59.320 43.478 6.99 6.99 43.72 2.74
3797 6979 2.035066 AGCCTTTTGATGACAGTTGTGC 59.965 45.455 0.00 0.00 0.00 4.57
3814 6996 4.021981 GGTAGCACAAAAGAAATCAAGCCT 60.022 41.667 0.00 0.00 0.00 4.58
3825 7007 4.278170 TGAAATGTCCTGGTAGCACAAAAG 59.722 41.667 0.00 0.00 0.00 2.27
3827 7009 3.568007 GTGAAATGTCCTGGTAGCACAAA 59.432 43.478 0.00 0.00 0.00 2.83
3828 7010 3.146066 GTGAAATGTCCTGGTAGCACAA 58.854 45.455 0.00 0.00 0.00 3.33
3833 7015 4.156556 CCAACATGTGAAATGTCCTGGTAG 59.843 45.833 0.00 0.00 29.65 3.18
3835 7017 2.892852 CCAACATGTGAAATGTCCTGGT 59.107 45.455 0.00 0.00 29.65 4.00
3853 7035 5.378332 TGATACATCATGATGCATCACCAA 58.622 37.500 33.57 19.45 43.15 3.67
3872 7054 5.410924 CAACTGTTTCGAGATCAGGTGATA 58.589 41.667 19.59 0.00 46.07 2.15
3876 7058 2.368875 ACCAACTGTTTCGAGATCAGGT 59.631 45.455 14.63 7.96 34.02 4.00
3885 7067 8.339714 TCTTTTAGTTTGATACCAACTGTTTCG 58.660 33.333 0.00 0.00 30.88 3.46
3894 7076 9.581289 TGGAAGATTTCTTTTAGTTTGATACCA 57.419 29.630 0.00 0.00 36.11 3.25
3931 7113 6.040278 TGGCACTGTCACTTAATTTTCATTGA 59.960 34.615 0.00 0.00 0.00 2.57
3943 7125 6.463995 TTAAAAAGAATGGCACTGTCACTT 57.536 33.333 0.00 0.00 0.00 3.16
3947 7129 5.185828 AGGGATTAAAAAGAATGGCACTGTC 59.814 40.000 0.00 0.00 0.00 3.51
3949 7131 5.665916 AGGGATTAAAAAGAATGGCACTG 57.334 39.130 0.00 0.00 0.00 3.66
3951 7133 5.449999 CGGTAGGGATTAAAAAGAATGGCAC 60.450 44.000 0.00 0.00 0.00 5.01
3954 7136 4.037565 GGCGGTAGGGATTAAAAAGAATGG 59.962 45.833 0.00 0.00 0.00 3.16
3958 7140 4.304048 TTGGCGGTAGGGATTAAAAAGA 57.696 40.909 0.00 0.00 0.00 2.52
3959 7141 4.218852 TGTTTGGCGGTAGGGATTAAAAAG 59.781 41.667 0.00 0.00 0.00 2.27
3960 7142 4.150359 TGTTTGGCGGTAGGGATTAAAAA 58.850 39.130 0.00 0.00 0.00 1.94
3961 7143 3.764218 TGTTTGGCGGTAGGGATTAAAA 58.236 40.909 0.00 0.00 0.00 1.52
3962 7144 3.436577 TGTTTGGCGGTAGGGATTAAA 57.563 42.857 0.00 0.00 0.00 1.52
3963 7145 3.083293 GTTGTTTGGCGGTAGGGATTAA 58.917 45.455 0.00 0.00 0.00 1.40
3964 7146 2.306512 AGTTGTTTGGCGGTAGGGATTA 59.693 45.455 0.00 0.00 0.00 1.75
3965 7147 1.074889 AGTTGTTTGGCGGTAGGGATT 59.925 47.619 0.00 0.00 0.00 3.01
3966 7148 0.696501 AGTTGTTTGGCGGTAGGGAT 59.303 50.000 0.00 0.00 0.00 3.85
3967 7149 0.035739 GAGTTGTTTGGCGGTAGGGA 59.964 55.000 0.00 0.00 0.00 4.20
3968 7150 0.958876 GGAGTTGTTTGGCGGTAGGG 60.959 60.000 0.00 0.00 0.00 3.53
3969 7151 0.036306 AGGAGTTGTTTGGCGGTAGG 59.964 55.000 0.00 0.00 0.00 3.18
4004 7186 2.926838 GAGGTGCTCTCGATCTGAAAAC 59.073 50.000 0.00 0.00 32.18 2.43
4005 7187 2.562738 TGAGGTGCTCTCGATCTGAAAA 59.437 45.455 0.00 0.00 45.32 2.29
4060 7242 1.337823 ACCACGTGTGCTAATGACCTC 60.338 52.381 15.65 0.00 0.00 3.85
4113 7295 0.320421 CCCGACCGAGCTTTTTGAGA 60.320 55.000 0.00 0.00 0.00 3.27
4170 7352 3.129502 TAGACTCCGCCGTCCACG 61.130 66.667 0.00 0.00 34.46 4.94
4176 7358 1.093159 AGTACTTGTAGACTCCGCCG 58.907 55.000 0.00 0.00 0.00 6.46
4209 7391 0.102120 GAGTCCTCTCCATGCACTCG 59.898 60.000 0.00 0.00 34.87 4.18
4210 7392 1.136695 CAGAGTCCTCTCCATGCACTC 59.863 57.143 0.00 0.00 41.26 3.51
4221 7403 4.501229 CCAAGCATATCACTCAGAGTCCTC 60.501 50.000 0.00 0.00 0.00 3.71
4251 7433 3.953775 ACAACCGAGGGTGCCAGG 61.954 66.667 7.15 0.00 35.34 4.45
4272 7454 4.305011 CCGTCATTGGCCGGTTTA 57.695 55.556 1.90 0.00 39.38 2.01
4427 7609 5.980698 AATCGAATTAGCATCACACTGAG 57.019 39.130 0.00 0.00 0.00 3.35
4428 7610 7.209475 TCATAATCGAATTAGCATCACACTGA 58.791 34.615 0.00 0.00 0.00 3.41
4434 7616 6.930722 TCAGCTTCATAATCGAATTAGCATCA 59.069 34.615 0.00 0.00 0.00 3.07
4446 7628 9.178427 GCAATGTCTATTTTCAGCTTCATAATC 57.822 33.333 0.00 0.00 0.00 1.75
4447 7629 8.689061 TGCAATGTCTATTTTCAGCTTCATAAT 58.311 29.630 0.00 0.00 0.00 1.28
4485 7667 0.530288 TGACATGAGCGAATCGTCCA 59.470 50.000 4.07 3.01 0.00 4.02
4490 7672 2.005451 AGTTGCTGACATGAGCGAATC 58.995 47.619 0.00 0.00 42.32 2.52
4494 7676 0.720027 CTGAGTTGCTGACATGAGCG 59.280 55.000 0.00 0.00 42.32 5.03
4508 7690 1.271054 ACTTTGGAAGCGATGCTGAGT 60.271 47.619 0.00 0.00 39.62 3.41
4509 7691 1.446907 ACTTTGGAAGCGATGCTGAG 58.553 50.000 0.00 0.00 39.62 3.35
4510 7692 1.806542 GAACTTTGGAAGCGATGCTGA 59.193 47.619 0.00 0.00 39.62 4.26
4512 7694 0.798776 CGAACTTTGGAAGCGATGCT 59.201 50.000 0.00 0.00 42.56 3.79
4513 7695 0.794605 GCGAACTTTGGAAGCGATGC 60.795 55.000 0.00 0.00 0.00 3.91
4515 7697 0.517316 GTGCGAACTTTGGAAGCGAT 59.483 50.000 0.00 0.00 0.00 4.58
4516 7698 0.531974 AGTGCGAACTTTGGAAGCGA 60.532 50.000 0.00 0.00 0.00 4.93
4517 7699 0.384725 CAGTGCGAACTTTGGAAGCG 60.385 55.000 0.00 0.00 0.00 4.68
4520 7702 1.134220 ACTCCAGTGCGAACTTTGGAA 60.134 47.619 6.03 0.00 39.11 3.53
4521 7703 0.468226 ACTCCAGTGCGAACTTTGGA 59.532 50.000 4.52 4.52 37.38 3.53
4522 7704 0.868406 GACTCCAGTGCGAACTTTGG 59.132 55.000 0.00 0.00 0.00 3.28
4524 7706 2.417719 GATGACTCCAGTGCGAACTTT 58.582 47.619 0.00 0.00 0.00 2.66
4532 7714 1.815613 ACTCTGTCGATGACTCCAGTG 59.184 52.381 0.00 0.00 33.15 3.66
4535 7717 1.911057 ACACTCTGTCGATGACTCCA 58.089 50.000 0.00 0.00 33.15 3.86
4536 7718 3.690139 TCTAACACTCTGTCGATGACTCC 59.310 47.826 0.00 0.00 33.15 3.85
4557 7739 8.306761 ACATGAAAGTTTTTCTCCATATGGTTC 58.693 33.333 21.28 13.84 36.34 3.62
4564 7746 6.127083 ACCACAACATGAAAGTTTTTCTCCAT 60.127 34.615 0.00 0.00 0.00 3.41
4565 7747 5.186797 ACCACAACATGAAAGTTTTTCTCCA 59.813 36.000 0.00 0.00 0.00 3.86
4575 7757 5.119279 CGTCTTCTCTACCACAACATGAAAG 59.881 44.000 0.00 0.00 0.00 2.62
4583 7765 3.150458 TCCTCGTCTTCTCTACCACAA 57.850 47.619 0.00 0.00 0.00 3.33
4609 7791 2.969016 CTGTCAGAGTGCGCTCCT 59.031 61.111 23.37 8.42 42.59 3.69
4655 7837 3.070878 ACGGAATGAGGGTTGCAATTTTT 59.929 39.130 0.59 0.00 0.00 1.94
4664 7846 1.877443 CAACGAAACGGAATGAGGGTT 59.123 47.619 0.00 0.00 0.00 4.11
4810 7992 2.358582 CACACATTCCTTGTCTGCACAA 59.641 45.455 0.00 0.00 40.40 3.33
4815 7997 2.849942 TGGACACACATTCCTTGTCTG 58.150 47.619 0.00 0.00 39.72 3.51
4843 8025 5.943349 TCTTCAGGGTTAATACATTCGGA 57.057 39.130 0.00 0.00 0.00 4.55
4945 8138 3.716601 TGCATATATATCATGTCGGCCG 58.283 45.455 22.12 22.12 0.00 6.13
4969 8162 2.268920 GGGACGCATTGGCTCTGA 59.731 61.111 0.00 0.00 38.10 3.27
5000 8193 1.860484 GCTGTGGAGAACTGGCAAGC 61.860 60.000 0.00 0.00 0.00 4.01
5001 8194 2.251600 GCTGTGGAGAACTGGCAAG 58.748 57.895 0.00 0.00 0.00 4.01
5002 8195 4.481195 GCTGTGGAGAACTGGCAA 57.519 55.556 0.00 0.00 0.00 4.52
5004 8197 2.731691 TTCGGCTGTGGAGAACTGGC 62.732 60.000 0.00 0.00 46.10 4.85
5013 8206 1.493950 GATGAGCGATTCGGCTGTGG 61.494 60.000 8.34 0.00 44.93 4.17
5018 8211 3.122613 CAGATTAAGATGAGCGATTCGGC 59.877 47.826 8.34 0.36 0.00 5.54
5030 8223 7.113437 TCTATCTAGCCGCTACAGATTAAGAT 58.887 38.462 10.30 7.02 31.60 2.40
5045 8238 3.326297 AGCCCATGAACTTCTATCTAGCC 59.674 47.826 0.00 0.00 0.00 3.93
5210 8410 1.098712 AGATCCTCACGACGGAGAGC 61.099 60.000 13.00 1.41 37.05 4.09
5315 8515 2.675423 TAGTGCAGGCGGTCGAGT 60.675 61.111 0.00 0.00 0.00 4.18



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.