Multiple sequence alignment - TraesCS3A01G285800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G285800 chr3A 100.000 3566 0 0 1 3566 514309122 514305557 0.000000e+00 6586.0
1 TraesCS3A01G285800 chr3B 91.239 2066 102 31 1125 3139 519053420 519051383 0.000000e+00 2739.0
2 TraesCS3A01G285800 chr3B 89.631 434 22 12 556 976 519054061 519053638 6.780000e-147 531.0
3 TraesCS3A01G285800 chr3B 95.902 122 5 0 985 1106 519053594 519053473 7.810000e-47 198.0
4 TraesCS3A01G285800 chr3D 90.422 2015 89 34 1131 3089 394922473 394920507 0.000000e+00 2556.0
5 TraesCS3A01G285800 chr3D 91.611 453 37 1 1 452 394923741 394923289 3.020000e-175 625.0
6 TraesCS3A01G285800 chr3D 90.572 297 8 7 672 968 394923029 394922753 3.360000e-100 375.0
7 TraesCS3A01G285800 chr3D 93.846 130 4 1 985 1110 394922674 394922545 3.630000e-45 193.0
8 TraesCS3A01G285800 chr3D 88.542 96 6 2 526 616 394923147 394923052 1.050000e-20 111.0
9 TraesCS3A01G285800 chr3D 94.737 38 2 0 3399 3436 394920500 394920463 3.840000e-05 60.2
10 TraesCS3A01G285800 chr2D 88.679 53 4 2 3432 3483 37515385 37515436 2.970000e-06 63.9
11 TraesCS3A01G285800 chr1D 89.362 47 4 1 3436 3482 380202774 380202729 1.380000e-04 58.4
12 TraesCS3A01G285800 chr1A 96.875 32 1 0 3433 3464 21479142 21479173 2.000000e-03 54.7
13 TraesCS3A01G285800 chr1A 100.000 29 0 0 3436 3464 576224434 576224462 2.000000e-03 54.7
14 TraesCS3A01G285800 chr5A 100.000 28 0 0 3433 3460 118769689 118769716 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G285800 chr3A 514305557 514309122 3565 True 6586.000000 6586 100.000000 1 3566 1 chr3A.!!$R1 3565
1 TraesCS3A01G285800 chr3B 519051383 519054061 2678 True 1156.000000 2739 92.257333 556 3139 3 chr3B.!!$R1 2583
2 TraesCS3A01G285800 chr3D 394920463 394923741 3278 True 653.366667 2556 91.621667 1 3436 6 chr3D.!!$R1 3435

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 416 0.514691 GCAGTTTTGAGCTGGAGTCG 59.485 55.0 0.0 0.0 34.73 4.18 F
1117 1275 0.107643 TGCACCATTCACTTCACGGA 59.892 50.0 0.0 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2255 2498 0.038343 CATTTGGCAAGTTGACGGGG 60.038 55.0 7.16 0.0 0.0 5.73 R
2846 3143 1.217882 CGTCGACTTGCACCTTTTCT 58.782 50.0 14.70 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.067217 AGGAGATACACATTTTAGGCACTT 57.933 37.500 0.00 0.00 41.75 3.16
40 41 6.116126 AGGAGATACACATTTTAGGCACTTC 58.884 40.000 0.00 0.00 41.75 3.01
43 44 6.711277 AGATACACATTTTAGGCACTTCTCA 58.289 36.000 0.00 0.00 41.75 3.27
54 55 1.676014 GCACTTCTCAACCGGCTATGT 60.676 52.381 0.00 0.00 0.00 2.29
98 99 8.883731 CCTCTAGTATTGGACATTTTTACTGTG 58.116 37.037 0.00 0.00 0.00 3.66
100 101 9.431887 TCTAGTATTGGACATTTTTACTGTGAC 57.568 33.333 0.00 0.00 0.00 3.67
118 119 5.430886 TGTGACCAACCATCAATGATAGAG 58.569 41.667 0.00 0.00 0.00 2.43
140 141 7.177878 AGAGGGTAAATCTTTGACATGACAAT 58.822 34.615 11.32 0.00 0.00 2.71
209 210 6.871044 GTGGTATCACTGTATATATGCGTG 57.129 41.667 14.70 14.70 40.58 5.34
214 215 6.712241 ATCACTGTATATATGCGTGCTTTC 57.288 37.500 15.50 0.00 0.00 2.62
277 278 3.705604 ACCATTTGCGCTATTATTGTGC 58.294 40.909 9.73 5.32 40.87 4.57
283 284 1.676006 GCGCTATTATTGTGCCACCTT 59.324 47.619 0.00 0.00 35.17 3.50
307 308 5.242434 TCGTGGCAACTTTATGTATGTTCT 58.758 37.500 0.00 0.00 37.61 3.01
346 347 6.149474 ACATTATCGTTGGAAAGAAGAACTGG 59.851 38.462 0.00 0.00 0.00 4.00
348 349 4.351874 TCGTTGGAAAGAAGAACTGGAT 57.648 40.909 0.00 0.00 0.00 3.41
350 351 3.815401 CGTTGGAAAGAAGAACTGGATGT 59.185 43.478 0.00 0.00 0.00 3.06
387 389 4.871557 TGGATACGGTATTTTTCGTGGAAG 59.128 41.667 1.57 0.00 40.05 3.46
414 416 0.514691 GCAGTTTTGAGCTGGAGTCG 59.485 55.000 0.00 0.00 34.73 4.18
422 424 1.227639 GAGCTGGAGTCGACGCTATA 58.772 55.000 18.88 5.42 31.96 1.31
426 428 0.666913 TGGAGTCGACGCTATAAGCC 59.333 55.000 18.88 7.78 38.18 4.35
458 497 5.703592 ACGCTTGGTTTTCAACATATCTACA 59.296 36.000 0.00 0.00 0.00 2.74
461 500 7.218773 CGCTTGGTTTTCAACATATCTACATTG 59.781 37.037 0.00 0.00 0.00 2.82
467 506 9.559958 GTTTTCAACATATCTACATTGGAAGTG 57.440 33.333 0.00 0.00 0.00 3.16
582 658 0.657368 CGCGGTTGCTGTCAAGAAAC 60.657 55.000 0.00 0.00 40.83 2.78
596 672 0.529773 AGAAACGCGAAGTGCACTCA 60.530 50.000 21.95 0.00 46.97 3.41
650 726 2.204136 TGGGGCCAGATGGTCAGT 60.204 61.111 4.39 0.00 42.93 3.41
662 738 5.452496 CCAGATGGTCAGTGGTAATAGTCAG 60.452 48.000 0.00 0.00 0.00 3.51
696 772 3.996150 ACCAGTGAAGTGAGCATTTTG 57.004 42.857 0.00 0.00 0.00 2.44
700 776 1.615392 GTGAAGTGAGCATTTTGGGCT 59.385 47.619 0.00 0.00 46.07 5.19
701 777 2.036346 GTGAAGTGAGCATTTTGGGCTT 59.964 45.455 0.00 0.00 42.78 4.35
702 778 2.036217 TGAAGTGAGCATTTTGGGCTTG 59.964 45.455 0.00 0.00 42.78 4.01
703 779 1.999648 AGTGAGCATTTTGGGCTTGA 58.000 45.000 0.00 0.00 42.78 3.02
704 780 1.891150 AGTGAGCATTTTGGGCTTGAG 59.109 47.619 0.00 0.00 42.78 3.02
705 781 1.888512 GTGAGCATTTTGGGCTTGAGA 59.111 47.619 0.00 0.00 42.78 3.27
706 782 2.297033 GTGAGCATTTTGGGCTTGAGAA 59.703 45.455 0.00 0.00 42.78 2.87
707 783 2.559668 TGAGCATTTTGGGCTTGAGAAG 59.440 45.455 0.00 0.00 42.78 2.85
785 861 5.227184 GCTTTTTGGCGTAGTTTAATCATCG 59.773 40.000 0.00 0.00 0.00 3.84
794 873 2.017049 GTTTAATCATCGGCTGGCACT 58.983 47.619 1.08 0.00 0.00 4.40
928 1016 1.158484 GCGGTTAATTCCTCGCCCTC 61.158 60.000 7.66 0.00 42.02 4.30
980 1068 3.706373 CCTCCCTGGTCCGGTGTG 61.706 72.222 0.00 0.00 0.00 3.82
981 1069 2.923035 CTCCCTGGTCCGGTGTGT 60.923 66.667 0.00 0.00 0.00 3.72
982 1070 3.238497 TCCCTGGTCCGGTGTGTG 61.238 66.667 0.00 0.00 0.00 3.82
1112 1270 2.977405 GTGAGTGCACCATTCACTTC 57.023 50.000 23.37 10.16 44.15 3.01
1113 1271 2.221169 GTGAGTGCACCATTCACTTCA 58.779 47.619 23.37 12.36 44.15 3.02
1114 1272 2.031682 GTGAGTGCACCATTCACTTCAC 60.032 50.000 23.37 18.68 44.15 3.18
1115 1273 1.195448 GAGTGCACCATTCACTTCACG 59.805 52.381 14.63 0.00 44.09 4.35
1116 1274 0.238289 GTGCACCATTCACTTCACGG 59.762 55.000 5.22 0.00 0.00 4.94
1117 1275 0.107643 TGCACCATTCACTTCACGGA 59.892 50.000 0.00 0.00 0.00 4.69
1118 1276 0.517316 GCACCATTCACTTCACGGAC 59.483 55.000 0.00 0.00 0.00 4.79
1121 1279 1.019278 CCATTCACTTCACGGACGGG 61.019 60.000 0.00 0.00 0.00 5.28
1122 1280 0.320421 CATTCACTTCACGGACGGGT 60.320 55.000 0.00 0.00 0.00 5.28
1123 1281 1.067425 CATTCACTTCACGGACGGGTA 60.067 52.381 0.00 0.00 0.00 3.69
1135 1347 2.733227 CGGACGGGTACATGTGTTCTAC 60.733 54.545 9.11 0.00 0.00 2.59
1140 1352 3.428999 CGGGTACATGTGTTCTACCTCTG 60.429 52.174 9.11 0.00 0.00 3.35
1149 1361 4.202223 TGTGTTCTACCTCTGACTTGGTTC 60.202 45.833 0.00 0.00 37.74 3.62
1171 1383 6.827586 TCGCCAAACTGATTAAAATTACCT 57.172 33.333 0.00 0.00 0.00 3.08
1209 1421 1.404748 TGCCAATGTATGCATGAACGG 59.595 47.619 10.16 4.58 35.15 4.44
1210 1422 1.269206 GCCAATGTATGCATGAACGGG 60.269 52.381 10.16 6.80 35.15 5.28
1296 1531 0.321475 TGACTCGTCCATGCATTGCA 60.321 50.000 14.72 14.72 44.86 4.08
1470 1705 3.423154 GGCACCTTCTTCACCGCG 61.423 66.667 0.00 0.00 0.00 6.46
1677 1912 3.474570 GCCCTGGATGACTCGGCT 61.475 66.667 0.00 0.00 36.65 5.52
1817 2055 6.994496 TCCTTCTACATAGCATTCAGATTTGG 59.006 38.462 0.00 0.00 0.00 3.28
1818 2056 6.293845 CCTTCTACATAGCATTCAGATTTGGC 60.294 42.308 0.00 0.00 0.00 4.52
1821 2059 5.511234 ACATAGCATTCAGATTTGGCTTC 57.489 39.130 0.00 0.00 36.10 3.86
1884 2125 2.169789 CGGTCTTGCAGGATCAGCG 61.170 63.158 10.00 1.57 33.85 5.18
2275 2518 0.038343 CCCGTCAACTTGCCAAATGG 60.038 55.000 0.00 0.00 38.53 3.16
2289 2532 1.094785 AAATGGCTGACCGTATGTGC 58.905 50.000 0.00 0.00 39.70 4.57
2615 2883 1.493950 GCGCATTGGATCGTCAGAGG 61.494 60.000 0.30 0.00 0.00 3.69
2641 2909 5.163854 ACTCTGAACGAAAGCAATTAATCCG 60.164 40.000 0.00 0.00 0.00 4.18
2675 2943 9.793252 AATTACTATTCAAATGCACACTCAATC 57.207 29.630 0.00 0.00 0.00 2.67
2676 2944 6.822667 ACTATTCAAATGCACACTCAATCA 57.177 33.333 0.00 0.00 0.00 2.57
2677 2945 7.218228 ACTATTCAAATGCACACTCAATCAA 57.782 32.000 0.00 0.00 0.00 2.57
2678 2946 7.660112 ACTATTCAAATGCACACTCAATCAAA 58.340 30.769 0.00 0.00 0.00 2.69
2679 2947 8.308931 ACTATTCAAATGCACACTCAATCAAAT 58.691 29.630 0.00 0.00 0.00 2.32
2680 2948 6.772770 TTCAAATGCACACTCAATCAAATG 57.227 33.333 0.00 0.00 0.00 2.32
2681 2949 4.687018 TCAAATGCACACTCAATCAAATGC 59.313 37.500 0.00 0.00 0.00 3.56
2682 2950 3.945981 ATGCACACTCAATCAAATGCA 57.054 38.095 0.00 0.00 46.19 3.96
2683 2951 3.729862 TGCACACTCAATCAAATGCAA 57.270 38.095 0.00 0.00 39.94 4.08
2684 2952 4.260139 TGCACACTCAATCAAATGCAAT 57.740 36.364 0.00 0.00 39.94 3.56
2706 3002 1.000827 CTGGATCATTCGTCTCCTCCG 60.001 57.143 0.00 0.00 0.00 4.63
2708 3004 1.033574 GATCATTCGTCTCCTCCGGT 58.966 55.000 0.00 0.00 0.00 5.28
2772 3069 2.677875 CTCCTTGCTTGGTGCCCC 60.678 66.667 0.00 0.00 42.00 5.80
2779 3076 2.983592 CTTGGTGCCCCGGTGAAC 60.984 66.667 0.00 0.00 0.00 3.18
2780 3077 3.783362 CTTGGTGCCCCGGTGAACA 62.783 63.158 0.00 0.00 0.00 3.18
2798 3095 6.918022 GGTGAACAAAGTATCCAAGAAACTTG 59.082 38.462 4.73 4.73 33.85 3.16
2856 3153 2.661979 CGCAAGAACGTAGAAAAGGTGC 60.662 50.000 0.00 0.00 43.02 5.01
2898 3195 4.401202 ACAAACCGTGAAGGAAATTGAACT 59.599 37.500 0.00 0.00 45.00 3.01
3099 3397 0.608035 TGATTGGGACACGGGCTTTC 60.608 55.000 0.00 0.00 39.29 2.62
3112 3410 2.689646 GGGCTTTCGCTCATATACCTC 58.310 52.381 0.00 0.00 36.36 3.85
3126 3424 7.372451 TCATATACCTCAAAACTGTTTTCCG 57.628 36.000 15.17 9.23 0.00 4.30
3139 3437 4.991687 ACTGTTTTCCGATTTCACTCTCTC 59.008 41.667 0.00 0.00 0.00 3.20
3140 3438 4.956085 TGTTTTCCGATTTCACTCTCTCA 58.044 39.130 0.00 0.00 0.00 3.27
3141 3439 5.551233 TGTTTTCCGATTTCACTCTCTCAT 58.449 37.500 0.00 0.00 0.00 2.90
3142 3440 5.997746 TGTTTTCCGATTTCACTCTCTCATT 59.002 36.000 0.00 0.00 0.00 2.57
3143 3441 6.486657 TGTTTTCCGATTTCACTCTCTCATTT 59.513 34.615 0.00 0.00 0.00 2.32
3144 3442 7.013274 TGTTTTCCGATTTCACTCTCTCATTTT 59.987 33.333 0.00 0.00 0.00 1.82
3145 3443 7.510549 TTTCCGATTTCACTCTCTCATTTTT 57.489 32.000 0.00 0.00 0.00 1.94
3167 3465 5.918426 TTTTTACCTTTTTGAACGGTCCT 57.082 34.783 0.00 0.00 32.36 3.85
3168 3466 5.503662 TTTTACCTTTTTGAACGGTCCTC 57.496 39.130 0.00 0.00 32.36 3.71
3169 3467 1.977056 ACCTTTTTGAACGGTCCTCC 58.023 50.000 0.00 0.00 0.00 4.30
3170 3468 1.493446 ACCTTTTTGAACGGTCCTCCT 59.507 47.619 0.00 0.00 0.00 3.69
3171 3469 2.092049 ACCTTTTTGAACGGTCCTCCTT 60.092 45.455 0.00 0.00 0.00 3.36
3172 3470 2.552743 CCTTTTTGAACGGTCCTCCTTC 59.447 50.000 0.00 0.00 0.00 3.46
3173 3471 3.477530 CTTTTTGAACGGTCCTCCTTCT 58.522 45.455 0.00 0.00 0.00 2.85
3174 3472 2.543777 TTTGAACGGTCCTCCTTCTG 57.456 50.000 0.00 0.00 0.00 3.02
3175 3473 0.685097 TTGAACGGTCCTCCTTCTGG 59.315 55.000 0.00 0.00 0.00 3.86
3176 3474 0.178944 TGAACGGTCCTCCTTCTGGA 60.179 55.000 0.00 0.00 40.69 3.86
3180 3478 3.300013 GTCCTCCTTCTGGACCGG 58.700 66.667 0.00 0.00 46.01 5.28
3181 3479 2.683933 TCCTCCTTCTGGACCGGC 60.684 66.667 0.00 0.00 37.46 6.13
3182 3480 2.685380 CCTCCTTCTGGACCGGCT 60.685 66.667 0.00 0.00 37.46 5.52
3183 3481 2.581354 CTCCTTCTGGACCGGCTG 59.419 66.667 0.00 0.00 37.46 4.85
3184 3482 3.672295 CTCCTTCTGGACCGGCTGC 62.672 68.421 0.00 0.00 37.46 5.25
3185 3483 4.020617 CCTTCTGGACCGGCTGCA 62.021 66.667 0.00 0.00 34.57 4.41
3186 3484 2.435586 CTTCTGGACCGGCTGCAG 60.436 66.667 10.11 10.11 39.70 4.41
3187 3485 4.704833 TTCTGGACCGGCTGCAGC 62.705 66.667 30.88 30.88 38.23 5.25
3204 3502 3.470888 CGGCGGGGTCTTCCTCAT 61.471 66.667 0.00 0.00 32.73 2.90
3205 3503 2.131709 CGGCGGGGTCTTCCTCATA 61.132 63.158 0.00 0.00 32.73 2.15
3206 3504 1.446366 GGCGGGGTCTTCCTCATAC 59.554 63.158 0.00 0.00 32.73 2.39
3207 3505 1.067582 GCGGGGTCTTCCTCATACG 59.932 63.158 0.00 0.00 32.73 3.06
3208 3506 1.740285 CGGGGTCTTCCTCATACGG 59.260 63.158 0.00 0.00 32.73 4.02
3209 3507 1.446366 GGGGTCTTCCTCATACGGC 59.554 63.158 0.00 0.00 33.58 5.68
3210 3508 1.446366 GGGTCTTCCTCATACGGCC 59.554 63.158 0.00 0.00 0.00 6.13
3211 3509 1.335132 GGGTCTTCCTCATACGGCCA 61.335 60.000 2.24 0.00 0.00 5.36
3212 3510 0.759346 GGTCTTCCTCATACGGCCAT 59.241 55.000 2.24 0.00 0.00 4.40
3213 3511 1.541233 GGTCTTCCTCATACGGCCATG 60.541 57.143 2.24 0.00 0.00 3.66
3214 3512 1.139058 GTCTTCCTCATACGGCCATGT 59.861 52.381 2.24 0.00 0.00 3.21
3215 3513 1.138859 TCTTCCTCATACGGCCATGTG 59.861 52.381 2.24 0.00 0.00 3.21
3216 3514 0.463654 TTCCTCATACGGCCATGTGC 60.464 55.000 2.24 0.00 40.16 4.57
3217 3515 1.146930 CCTCATACGGCCATGTGCT 59.853 57.895 2.24 0.00 40.92 4.40
3223 3521 3.740397 CGGCCATGTGCTGTGGTG 61.740 66.667 2.24 0.00 41.73 4.17
3224 3522 2.282391 GGCCATGTGCTGTGGTGA 60.282 61.111 0.00 0.00 40.92 4.02
3225 3523 1.679977 GGCCATGTGCTGTGGTGAT 60.680 57.895 0.00 0.00 40.92 3.06
3226 3524 1.660560 GGCCATGTGCTGTGGTGATC 61.661 60.000 0.00 0.00 40.92 2.92
3227 3525 0.961857 GCCATGTGCTGTGGTGATCA 60.962 55.000 0.00 0.00 39.01 2.92
3228 3526 1.092348 CCATGTGCTGTGGTGATCAG 58.908 55.000 0.00 0.00 36.18 2.90
3241 3539 3.189618 GTGATCAGCACCATGAGATGA 57.810 47.619 8.20 8.20 41.78 2.92
3242 3540 3.132160 GTGATCAGCACCATGAGATGAG 58.868 50.000 10.87 0.00 41.78 2.90
3243 3541 3.036091 TGATCAGCACCATGAGATGAGA 58.964 45.455 10.87 2.45 31.44 3.27
3244 3542 2.975732 TCAGCACCATGAGATGAGAC 57.024 50.000 0.00 0.00 0.00 3.36
3245 3543 1.483827 TCAGCACCATGAGATGAGACC 59.516 52.381 0.00 0.00 0.00 3.85
3246 3544 1.208776 CAGCACCATGAGATGAGACCA 59.791 52.381 0.00 0.00 0.00 4.02
3247 3545 2.125233 AGCACCATGAGATGAGACCAT 58.875 47.619 0.00 0.00 35.29 3.55
3258 3556 2.408271 TGAGACCATCCAACATCTGC 57.592 50.000 0.00 0.00 0.00 4.26
3259 3557 1.911357 TGAGACCATCCAACATCTGCT 59.089 47.619 0.00 0.00 0.00 4.24
3260 3558 3.106827 TGAGACCATCCAACATCTGCTA 58.893 45.455 0.00 0.00 0.00 3.49
3261 3559 3.118629 TGAGACCATCCAACATCTGCTAC 60.119 47.826 0.00 0.00 0.00 3.58
3262 3560 2.840038 AGACCATCCAACATCTGCTACA 59.160 45.455 0.00 0.00 0.00 2.74
3263 3561 2.939103 GACCATCCAACATCTGCTACAC 59.061 50.000 0.00 0.00 0.00 2.90
3264 3562 1.935873 CCATCCAACATCTGCTACACG 59.064 52.381 0.00 0.00 0.00 4.49
3265 3563 1.935873 CATCCAACATCTGCTACACGG 59.064 52.381 0.00 0.00 0.00 4.94
3266 3564 0.973632 TCCAACATCTGCTACACGGT 59.026 50.000 0.00 0.00 0.00 4.83
3267 3565 1.346395 TCCAACATCTGCTACACGGTT 59.654 47.619 0.00 0.00 0.00 4.44
3268 3566 1.464608 CCAACATCTGCTACACGGTTG 59.535 52.381 0.00 0.00 36.34 3.77
3269 3567 1.135972 CAACATCTGCTACACGGTTGC 60.136 52.381 0.00 4.15 35.10 4.17
3270 3568 1.014044 ACATCTGCTACACGGTTGCG 61.014 55.000 6.14 0.00 37.12 4.85
3271 3569 1.014044 CATCTGCTACACGGTTGCGT 61.014 55.000 6.14 0.00 37.12 5.24
3272 3570 0.320421 ATCTGCTACACGGTTGCGTT 60.320 50.000 6.14 0.00 37.12 4.84
3273 3571 1.204062 CTGCTACACGGTTGCGTTG 59.796 57.895 6.14 0.00 37.12 4.10
3274 3572 2.127383 GCTACACGGTTGCGTTGC 60.127 61.111 0.00 0.00 0.00 4.17
3275 3573 2.604174 GCTACACGGTTGCGTTGCT 61.604 57.895 0.00 0.00 32.23 3.91
3276 3574 1.204062 CTACACGGTTGCGTTGCTG 59.796 57.895 0.00 0.00 0.00 4.41
3277 3575 2.764251 CTACACGGTTGCGTTGCTGC 62.764 60.000 0.00 0.00 0.00 5.25
3278 3576 4.249020 CACGGTTGCGTTGCTGCA 62.249 61.111 0.00 0.00 44.61 4.41
3286 3584 2.646719 CGTTGCTGCAAGGCATGT 59.353 55.556 20.29 0.00 42.09 3.21
3287 3585 1.007038 CGTTGCTGCAAGGCATGTT 60.007 52.632 20.29 0.00 42.09 2.71
3288 3586 0.598158 CGTTGCTGCAAGGCATGTTT 60.598 50.000 20.29 0.00 42.09 2.83
3289 3587 0.863144 GTTGCTGCAAGGCATGTTTG 59.137 50.000 16.53 7.48 42.09 2.93
3290 3588 0.249953 TTGCTGCAAGGCATGTTTGG 60.250 50.000 11.69 1.15 42.09 3.28
3291 3589 1.114119 TGCTGCAAGGCATGTTTGGA 61.114 50.000 0.00 9.24 38.13 3.53
3292 3590 0.668401 GCTGCAAGGCATGTTTGGAC 60.668 55.000 12.12 3.71 38.13 4.02
3293 3591 0.387622 CTGCAAGGCATGTTTGGACG 60.388 55.000 12.12 0.00 38.13 4.79
3294 3592 1.106351 TGCAAGGCATGTTTGGACGT 61.106 50.000 12.12 0.00 31.71 4.34
3295 3593 0.387239 GCAAGGCATGTTTGGACGTC 60.387 55.000 7.13 7.13 0.00 4.34
3296 3594 0.240945 CAAGGCATGTTTGGACGTCC 59.759 55.000 28.17 28.17 0.00 4.79
3297 3595 0.893727 AAGGCATGTTTGGACGTCCC 60.894 55.000 31.19 16.73 34.29 4.46
3298 3596 1.303317 GGCATGTTTGGACGTCCCT 60.303 57.895 31.19 8.41 35.38 4.20
3299 3597 1.305930 GGCATGTTTGGACGTCCCTC 61.306 60.000 31.19 20.34 35.38 4.30
3300 3598 1.305930 GCATGTTTGGACGTCCCTCC 61.306 60.000 31.19 18.24 35.38 4.30
3301 3599 0.324943 CATGTTTGGACGTCCCTCCT 59.675 55.000 31.19 11.66 35.38 3.69
3302 3600 1.553248 CATGTTTGGACGTCCCTCCTA 59.447 52.381 31.19 14.32 35.38 2.94
3303 3601 1.263356 TGTTTGGACGTCCCTCCTAG 58.737 55.000 31.19 0.00 35.38 3.02
3304 3602 0.108281 GTTTGGACGTCCCTCCTAGC 60.108 60.000 31.19 10.81 35.38 3.42
3305 3603 0.543410 TTTGGACGTCCCTCCTAGCA 60.543 55.000 31.19 7.57 35.38 3.49
3306 3604 0.970937 TTGGACGTCCCTCCTAGCAG 60.971 60.000 31.19 0.00 35.38 4.24
3307 3605 1.380112 GGACGTCCCTCCTAGCAGT 60.380 63.158 24.75 0.00 0.00 4.40
3308 3606 1.668101 GGACGTCCCTCCTAGCAGTG 61.668 65.000 24.75 0.00 0.00 3.66
3309 3607 0.680280 GACGTCCCTCCTAGCAGTGA 60.680 60.000 3.51 0.00 0.00 3.41
3310 3608 0.681564 ACGTCCCTCCTAGCAGTGAG 60.682 60.000 0.00 0.00 0.00 3.51
3311 3609 1.388065 CGTCCCTCCTAGCAGTGAGG 61.388 65.000 8.11 8.11 46.39 3.86
3317 3615 3.518634 CTCCTAGCAGTGAGGAAAGAC 57.481 52.381 0.00 0.00 42.63 3.01
3318 3616 3.096092 CTCCTAGCAGTGAGGAAAGACT 58.904 50.000 0.00 0.00 42.63 3.24
3319 3617 2.828520 TCCTAGCAGTGAGGAAAGACTG 59.171 50.000 0.00 0.00 40.25 3.51
3320 3618 2.093764 CCTAGCAGTGAGGAAAGACTGG 60.094 54.545 0.00 0.00 40.06 4.00
3321 3619 0.689623 AGCAGTGAGGAAAGACTGGG 59.310 55.000 0.00 0.00 40.06 4.45
3322 3620 0.398318 GCAGTGAGGAAAGACTGGGT 59.602 55.000 0.00 0.00 40.06 4.51
3323 3621 1.879796 GCAGTGAGGAAAGACTGGGTG 60.880 57.143 0.00 0.00 40.06 4.61
3324 3622 1.059913 AGTGAGGAAAGACTGGGTGG 58.940 55.000 0.00 0.00 0.00 4.61
3325 3623 0.036875 GTGAGGAAAGACTGGGTGGG 59.963 60.000 0.00 0.00 0.00 4.61
3326 3624 1.133809 TGAGGAAAGACTGGGTGGGG 61.134 60.000 0.00 0.00 0.00 4.96
3327 3625 0.840722 GAGGAAAGACTGGGTGGGGA 60.841 60.000 0.00 0.00 0.00 4.81
3328 3626 0.178831 AGGAAAGACTGGGTGGGGAT 60.179 55.000 0.00 0.00 0.00 3.85
3329 3627 0.034089 GGAAAGACTGGGTGGGGATG 60.034 60.000 0.00 0.00 0.00 3.51
3330 3628 0.681243 GAAAGACTGGGTGGGGATGC 60.681 60.000 0.00 0.00 0.00 3.91
3331 3629 2.155197 AAAGACTGGGTGGGGATGCC 62.155 60.000 0.00 0.00 0.00 4.40
3332 3630 3.338250 GACTGGGTGGGGATGCCA 61.338 66.667 5.30 0.00 0.00 4.92
3333 3631 3.341629 ACTGGGTGGGGATGCCAG 61.342 66.667 5.30 0.00 35.00 4.85
3334 3632 3.016971 CTGGGTGGGGATGCCAGA 61.017 66.667 5.30 0.00 0.00 3.86
3335 3633 2.287117 TGGGTGGGGATGCCAGAT 60.287 61.111 5.30 0.00 0.00 2.90
3336 3634 2.196776 GGGTGGGGATGCCAGATG 59.803 66.667 5.30 0.00 0.00 2.90
3337 3635 2.520260 GGTGGGGATGCCAGATGC 60.520 66.667 5.30 0.00 41.77 3.91
3338 3636 2.903855 GTGGGGATGCCAGATGCG 60.904 66.667 5.30 0.00 45.60 4.73
3339 3637 4.193893 TGGGGATGCCAGATGCGG 62.194 66.667 5.30 0.00 45.60 5.69
3340 3638 3.877450 GGGGATGCCAGATGCGGA 61.877 66.667 5.30 0.00 45.60 5.54
3341 3639 2.592861 GGGATGCCAGATGCGGAC 60.593 66.667 0.00 0.00 45.60 4.79
3342 3640 2.507944 GGATGCCAGATGCGGACT 59.492 61.111 0.00 0.00 45.60 3.85
3343 3641 1.596477 GGATGCCAGATGCGGACTC 60.596 63.158 0.00 0.00 45.60 3.36
3344 3642 1.596477 GATGCCAGATGCGGACTCC 60.596 63.158 0.00 0.00 45.60 3.85
3365 3663 2.283101 CCATGGGGTGGTGTGGTG 60.283 66.667 2.85 0.00 43.44 4.17
3366 3664 2.283101 CATGGGGTGGTGTGGTGG 60.283 66.667 0.00 0.00 0.00 4.61
3367 3665 2.451493 ATGGGGTGGTGTGGTGGA 60.451 61.111 0.00 0.00 0.00 4.02
3368 3666 2.538141 ATGGGGTGGTGTGGTGGAG 61.538 63.158 0.00 0.00 0.00 3.86
3369 3667 3.175710 GGGGTGGTGTGGTGGAGT 61.176 66.667 0.00 0.00 0.00 3.85
3370 3668 2.113139 GGGTGGTGTGGTGGAGTG 59.887 66.667 0.00 0.00 0.00 3.51
3371 3669 2.594592 GGTGGTGTGGTGGAGTGC 60.595 66.667 0.00 0.00 0.00 4.40
3372 3670 2.191908 GTGGTGTGGTGGAGTGCA 59.808 61.111 0.00 0.00 0.00 4.57
3373 3671 2.186826 GTGGTGTGGTGGAGTGCAC 61.187 63.158 9.40 9.40 0.00 4.57
3374 3672 2.191908 GGTGTGGTGGAGTGCACA 59.808 61.111 21.04 0.00 33.88 4.57
3375 3673 2.186826 GGTGTGGTGGAGTGCACAC 61.187 63.158 21.04 13.37 44.94 3.82
3376 3674 2.203001 TGTGGTGGAGTGCACACG 60.203 61.111 21.04 0.00 39.69 4.49
3377 3675 2.972505 GTGGTGGAGTGCACACGG 60.973 66.667 21.04 0.00 39.69 4.94
3378 3676 4.248842 TGGTGGAGTGCACACGGG 62.249 66.667 21.04 0.00 39.69 5.28
3380 3678 4.250305 GTGGAGTGCACACGGGGT 62.250 66.667 21.04 0.00 36.20 4.95
3396 3694 3.873883 GTGCCTGCAGCTGCGATC 61.874 66.667 32.11 22.46 45.83 3.69
3397 3695 4.397832 TGCCTGCAGCTGCGATCA 62.398 61.111 32.11 24.61 45.83 2.92
3427 3725 1.909700 TGTTTGGACCTGCTTGATCC 58.090 50.000 0.00 0.00 0.00 3.36
3428 3726 1.177401 GTTTGGACCTGCTTGATCCC 58.823 55.000 0.00 0.00 0.00 3.85
3436 3734 1.202580 CCTGCTTGATCCCGGTCTAAG 60.203 57.143 0.00 0.50 0.00 2.18
3437 3735 1.757118 CTGCTTGATCCCGGTCTAAGA 59.243 52.381 0.00 0.00 0.00 2.10
3438 3736 1.757118 TGCTTGATCCCGGTCTAAGAG 59.243 52.381 0.00 0.00 0.00 2.85
3439 3737 1.539280 GCTTGATCCCGGTCTAAGAGC 60.539 57.143 0.00 0.00 0.00 4.09
3440 3738 1.757118 CTTGATCCCGGTCTAAGAGCA 59.243 52.381 0.00 0.00 0.00 4.26
3441 3739 2.088104 TGATCCCGGTCTAAGAGCAT 57.912 50.000 0.00 0.00 0.00 3.79
3442 3740 1.964223 TGATCCCGGTCTAAGAGCATC 59.036 52.381 0.00 0.00 0.00 3.91
3453 3751 4.521062 GAGCATCTCCAGCCGCGT 62.521 66.667 4.92 0.00 0.00 6.01
3454 3752 4.521062 AGCATCTCCAGCCGCGTC 62.521 66.667 4.92 0.00 0.00 5.19
3455 3753 4.521062 GCATCTCCAGCCGCGTCT 62.521 66.667 4.92 0.00 0.00 4.18
3456 3754 2.279120 CATCTCCAGCCGCGTCTC 60.279 66.667 4.92 0.00 0.00 3.36
3457 3755 3.532155 ATCTCCAGCCGCGTCTCC 61.532 66.667 4.92 0.00 0.00 3.71
3459 3757 4.069232 CTCCAGCCGCGTCTCCAA 62.069 66.667 4.92 0.00 0.00 3.53
3460 3758 4.373116 TCCAGCCGCGTCTCCAAC 62.373 66.667 4.92 0.00 0.00 3.77
3461 3759 4.680237 CCAGCCGCGTCTCCAACA 62.680 66.667 4.92 0.00 0.00 3.33
3462 3760 3.114616 CAGCCGCGTCTCCAACAG 61.115 66.667 4.92 0.00 0.00 3.16
3463 3761 4.379243 AGCCGCGTCTCCAACAGG 62.379 66.667 4.92 0.00 0.00 4.00
3464 3762 4.681978 GCCGCGTCTCCAACAGGT 62.682 66.667 4.92 0.00 0.00 4.00
3465 3763 2.030562 CCGCGTCTCCAACAGGTT 59.969 61.111 4.92 0.00 0.00 3.50
3466 3764 1.597027 CCGCGTCTCCAACAGGTTT 60.597 57.895 4.92 0.00 0.00 3.27
3467 3765 1.566018 CCGCGTCTCCAACAGGTTTC 61.566 60.000 4.92 0.00 0.00 2.78
3468 3766 0.600255 CGCGTCTCCAACAGGTTTCT 60.600 55.000 0.00 0.00 0.00 2.52
3469 3767 1.149148 GCGTCTCCAACAGGTTTCTC 58.851 55.000 0.00 0.00 0.00 2.87
3470 3768 1.540363 GCGTCTCCAACAGGTTTCTCA 60.540 52.381 0.00 0.00 0.00 3.27
3471 3769 2.408050 CGTCTCCAACAGGTTTCTCAG 58.592 52.381 0.00 0.00 0.00 3.35
3472 3770 2.772287 GTCTCCAACAGGTTTCTCAGG 58.228 52.381 0.00 0.00 0.00 3.86
3473 3771 1.699634 TCTCCAACAGGTTTCTCAGGG 59.300 52.381 0.00 0.00 0.00 4.45
3474 3772 0.110486 TCCAACAGGTTTCTCAGGGC 59.890 55.000 0.00 0.00 0.00 5.19
3475 3773 1.237285 CCAACAGGTTTCTCAGGGCG 61.237 60.000 0.00 0.00 0.00 6.13
3476 3774 0.250295 CAACAGGTTTCTCAGGGCGA 60.250 55.000 0.00 0.00 0.00 5.54
3477 3775 0.250338 AACAGGTTTCTCAGGGCGAC 60.250 55.000 0.00 0.00 0.00 5.19
3478 3776 1.122019 ACAGGTTTCTCAGGGCGACT 61.122 55.000 0.00 0.00 0.00 4.18
3479 3777 0.035458 CAGGTTTCTCAGGGCGACTT 59.965 55.000 0.00 0.00 0.00 3.01
3480 3778 0.765510 AGGTTTCTCAGGGCGACTTT 59.234 50.000 0.00 0.00 0.00 2.66
3481 3779 1.143073 AGGTTTCTCAGGGCGACTTTT 59.857 47.619 0.00 0.00 0.00 2.27
3482 3780 1.535896 GGTTTCTCAGGGCGACTTTTC 59.464 52.381 0.00 0.00 0.00 2.29
3483 3781 2.218603 GTTTCTCAGGGCGACTTTTCA 58.781 47.619 0.00 0.00 0.00 2.69
3484 3782 2.814336 GTTTCTCAGGGCGACTTTTCAT 59.186 45.455 0.00 0.00 0.00 2.57
3485 3783 2.099141 TCTCAGGGCGACTTTTCATG 57.901 50.000 0.00 0.00 0.00 3.07
3486 3784 1.347707 TCTCAGGGCGACTTTTCATGT 59.652 47.619 0.00 0.00 0.00 3.21
3487 3785 2.154462 CTCAGGGCGACTTTTCATGTT 58.846 47.619 0.00 0.00 0.00 2.71
3488 3786 1.879380 TCAGGGCGACTTTTCATGTTG 59.121 47.619 0.00 0.00 0.00 3.33
3489 3787 1.068333 CAGGGCGACTTTTCATGTTGG 60.068 52.381 0.00 0.00 0.00 3.77
3490 3788 0.388520 GGGCGACTTTTCATGTTGGC 60.389 55.000 0.00 0.00 41.79 4.52
3491 3789 0.729140 GGCGACTTTTCATGTTGGCG 60.729 55.000 0.00 0.00 35.25 5.69
3492 3790 0.040425 GCGACTTTTCATGTTGGCGT 60.040 50.000 0.00 0.00 0.00 5.68
3493 3791 1.950472 CGACTTTTCATGTTGGCGTC 58.050 50.000 0.00 0.00 0.00 5.19
3494 3792 1.721489 CGACTTTTCATGTTGGCGTCG 60.721 52.381 10.80 10.80 37.13 5.12
3495 3793 0.591170 ACTTTTCATGTTGGCGTCGG 59.409 50.000 0.00 0.00 0.00 4.79
3496 3794 0.871722 CTTTTCATGTTGGCGTCGGA 59.128 50.000 0.00 0.00 0.00 4.55
3497 3795 1.265635 CTTTTCATGTTGGCGTCGGAA 59.734 47.619 0.00 0.00 0.00 4.30
3498 3796 1.309950 TTTCATGTTGGCGTCGGAAA 58.690 45.000 0.00 0.00 0.00 3.13
3499 3797 1.309950 TTCATGTTGGCGTCGGAAAA 58.690 45.000 0.00 0.00 0.00 2.29
3500 3798 1.309950 TCATGTTGGCGTCGGAAAAA 58.690 45.000 0.00 0.00 0.00 1.94
3514 3812 4.058797 AAAAACCCTCAGTCGCGG 57.941 55.556 6.13 0.00 0.00 6.46
3515 3813 2.258726 AAAAACCCTCAGTCGCGGC 61.259 57.895 0.21 0.21 0.00 6.53
3516 3814 4.699522 AAACCCTCAGTCGCGGCC 62.700 66.667 7.31 0.00 0.00 6.13
3520 3818 4.680237 CCTCAGTCGCGGCCACAA 62.680 66.667 7.31 0.00 0.00 3.33
3521 3819 2.664851 CTCAGTCGCGGCCACAAA 60.665 61.111 7.31 0.00 0.00 2.83
3522 3820 2.954753 CTCAGTCGCGGCCACAAAC 61.955 63.158 7.31 0.00 0.00 2.93
3523 3821 4.025401 CAGTCGCGGCCACAAACC 62.025 66.667 7.31 0.00 0.00 3.27
3529 3827 2.968156 CGGCCACAAACCGTCGAA 60.968 61.111 2.24 0.00 45.70 3.71
3530 3828 2.535788 CGGCCACAAACCGTCGAAA 61.536 57.895 2.24 0.00 45.70 3.46
3531 3829 1.847890 CGGCCACAAACCGTCGAAAT 61.848 55.000 2.24 0.00 45.70 2.17
3532 3830 0.109919 GGCCACAAACCGTCGAAATC 60.110 55.000 0.00 0.00 0.00 2.17
3533 3831 0.109919 GCCACAAACCGTCGAAATCC 60.110 55.000 0.00 0.00 0.00 3.01
3534 3832 1.519408 CCACAAACCGTCGAAATCCT 58.481 50.000 0.00 0.00 0.00 3.24
3535 3833 1.463444 CCACAAACCGTCGAAATCCTC 59.537 52.381 0.00 0.00 0.00 3.71
3536 3834 1.463444 CACAAACCGTCGAAATCCTCC 59.537 52.381 0.00 0.00 0.00 4.30
3537 3835 0.719465 CAAACCGTCGAAATCCTCCG 59.281 55.000 0.00 0.00 0.00 4.63
3538 3836 0.390735 AAACCGTCGAAATCCTCCGG 60.391 55.000 6.81 6.81 44.06 5.14
3539 3837 2.585247 CCGTCGAAATCCTCCGGC 60.585 66.667 0.00 0.00 0.00 6.13
3540 3838 2.494918 CGTCGAAATCCTCCGGCT 59.505 61.111 0.00 0.00 0.00 5.52
3541 3839 1.153628 CGTCGAAATCCTCCGGCTT 60.154 57.895 0.00 0.00 0.00 4.35
3542 3840 1.421410 CGTCGAAATCCTCCGGCTTG 61.421 60.000 0.00 0.00 0.00 4.01
3543 3841 0.108329 GTCGAAATCCTCCGGCTTGA 60.108 55.000 0.00 0.00 0.00 3.02
3544 3842 0.830648 TCGAAATCCTCCGGCTTGAT 59.169 50.000 0.00 0.00 0.00 2.57
3545 3843 1.202533 TCGAAATCCTCCGGCTTGATC 60.203 52.381 0.00 0.00 0.00 2.92
3546 3844 1.598882 GAAATCCTCCGGCTTGATCC 58.401 55.000 0.00 0.00 0.00 3.36
3547 3845 1.141858 GAAATCCTCCGGCTTGATCCT 59.858 52.381 0.00 0.00 0.00 3.24
3548 3846 1.216990 AATCCTCCGGCTTGATCCTT 58.783 50.000 0.00 0.00 0.00 3.36
3549 3847 1.216990 ATCCTCCGGCTTGATCCTTT 58.783 50.000 0.00 0.00 0.00 3.11
3550 3848 0.991920 TCCTCCGGCTTGATCCTTTT 59.008 50.000 0.00 0.00 0.00 2.27
3551 3849 1.354368 TCCTCCGGCTTGATCCTTTTT 59.646 47.619 0.00 0.00 0.00 1.94
3565 3863 3.065567 TTTTTGGGCCCGGCGATC 61.066 61.111 19.37 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.977635 TGTGTATCTCCTCAAGTTATGTGG 58.022 41.667 0.00 0.00 42.84 4.17
18 19 6.818644 TGAGAAGTGCCTAAAATGTGTATCTC 59.181 38.462 0.00 0.00 0.00 2.75
21 22 6.151144 GGTTGAGAAGTGCCTAAAATGTGTAT 59.849 38.462 0.00 0.00 0.00 2.29
39 40 3.965379 TTTACACATAGCCGGTTGAGA 57.035 42.857 1.90 0.00 0.00 3.27
40 41 3.126343 GGTTTTACACATAGCCGGTTGAG 59.874 47.826 1.90 0.02 0.00 3.02
43 44 3.143211 TGGTTTTACACATAGCCGGTT 57.857 42.857 1.90 0.00 0.00 4.44
78 79 7.209471 TGGTCACAGTAAAAATGTCCAATAC 57.791 36.000 0.00 0.00 0.00 1.89
98 99 4.141390 ACCCTCTATCATTGATGGTTGGTC 60.141 45.833 9.46 0.00 30.14 4.02
100 101 4.443978 ACCCTCTATCATTGATGGTTGG 57.556 45.455 9.46 12.50 30.14 3.77
118 119 8.506168 TCTATTGTCATGTCAAAGATTTACCC 57.494 34.615 9.41 0.00 0.00 3.69
158 159 5.821204 CGAGATCGCCCTTTTTCAAATTAT 58.179 37.500 0.00 0.00 0.00 1.28
159 160 5.229921 CGAGATCGCCCTTTTTCAAATTA 57.770 39.130 0.00 0.00 0.00 1.40
174 175 1.065551 TGATACCACTGTGCGAGATCG 59.934 52.381 1.29 0.00 43.27 3.69
189 190 7.201444 GGAAAGCACGCATATATACAGTGATAC 60.201 40.741 14.55 8.43 35.03 2.24
197 198 5.924475 AACAGGAAAGCACGCATATATAC 57.076 39.130 0.00 0.00 0.00 1.47
209 210 4.214758 ACCGTACATTTGTAACAGGAAAGC 59.785 41.667 12.28 0.00 31.52 3.51
214 215 6.730960 ATAACACCGTACATTTGTAACAGG 57.269 37.500 0.00 0.29 31.52 4.00
257 258 3.052036 GGCACAATAATAGCGCAAATGG 58.948 45.455 11.47 0.00 0.00 3.16
259 260 3.490761 GGTGGCACAATAATAGCGCAAAT 60.491 43.478 20.82 0.00 44.16 2.32
283 284 5.703592 AGAACATACATAAAGTTGCCACGAA 59.296 36.000 0.00 0.00 0.00 3.85
318 319 8.290325 AGTTCTTCTTTCCAACGATAATGTTTC 58.710 33.333 0.00 0.00 0.00 2.78
326 327 4.351874 TCCAGTTCTTCTTTCCAACGAT 57.648 40.909 0.00 0.00 0.00 3.73
339 340 2.233922 CCTTGGTACGACATCCAGTTCT 59.766 50.000 0.00 0.00 35.05 3.01
346 347 4.395959 TCCATAACCTTGGTACGACATC 57.604 45.455 0.00 0.00 38.01 3.06
348 349 4.202040 CGTATCCATAACCTTGGTACGACA 60.202 45.833 14.67 0.00 42.63 4.35
350 351 3.318839 CCGTATCCATAACCTTGGTACGA 59.681 47.826 18.44 0.00 42.63 3.43
387 389 5.713025 TCCAGCTCAAAACTGCATTTTATC 58.287 37.500 2.11 0.00 38.50 1.75
458 497 4.294347 TCCCCAAGTTTTTCACTTCCAAT 58.706 39.130 0.00 0.00 44.60 3.16
461 500 4.746535 TTTCCCCAAGTTTTTCACTTCC 57.253 40.909 0.00 0.00 44.60 3.46
504 543 8.122952 CGCGAGTTATTTTTCTCAGGAAAATAT 58.877 33.333 11.12 0.00 46.57 1.28
564 636 0.657368 CGTTTCTTGACAGCAACCGC 60.657 55.000 0.00 0.00 38.99 5.68
571 643 1.657538 GCACTTCGCGTTTCTTGACAG 60.658 52.381 5.77 0.00 0.00 3.51
596 672 3.736224 CTGGGCCCATGCTCCAGT 61.736 66.667 28.82 0.00 44.43 4.00
650 726 5.018809 ACCCGAGTAAACTGACTATTACCA 58.981 41.667 0.00 0.00 33.47 3.25
662 738 2.140717 CACTGGTTCACCCGAGTAAAC 58.859 52.381 0.00 0.00 35.15 2.01
696 772 2.421619 CACTCTCAACTTCTCAAGCCC 58.578 52.381 0.00 0.00 0.00 5.19
700 776 1.270305 CGGCCACTCTCAACTTCTCAA 60.270 52.381 2.24 0.00 0.00 3.02
701 777 0.318441 CGGCCACTCTCAACTTCTCA 59.682 55.000 2.24 0.00 0.00 3.27
702 778 0.603569 TCGGCCACTCTCAACTTCTC 59.396 55.000 2.24 0.00 0.00 2.87
703 779 0.605589 CTCGGCCACTCTCAACTTCT 59.394 55.000 2.24 0.00 0.00 2.85
704 780 1.016653 GCTCGGCCACTCTCAACTTC 61.017 60.000 2.24 0.00 0.00 3.01
705 781 1.004440 GCTCGGCCACTCTCAACTT 60.004 57.895 2.24 0.00 0.00 2.66
706 782 2.659610 GCTCGGCCACTCTCAACT 59.340 61.111 2.24 0.00 0.00 3.16
707 783 2.811317 CGCTCGGCCACTCTCAAC 60.811 66.667 2.24 0.00 0.00 3.18
794 873 0.792729 GATTTCATTTCACGCGCGCA 60.793 50.000 32.58 14.87 0.00 6.09
832 911 3.838271 GCGATCAGCCTCCGTGGA 61.838 66.667 0.00 0.00 40.81 4.02
928 1016 3.987404 CCGAGGGCACTGGAAAAG 58.013 61.111 0.00 0.00 0.00 2.27
976 1064 1.862806 GGAAGAGCTTCGCACACAC 59.137 57.895 4.32 0.00 40.37 3.82
977 1065 1.664649 CGGAAGAGCTTCGCACACA 60.665 57.895 4.32 0.00 40.37 3.72
979 1067 3.047735 TCGGAAGAGCTTCGCACA 58.952 55.556 4.32 0.00 40.37 4.57
980 1068 1.475441 CGATCGGAAGAGCTTCGCAC 61.475 60.000 7.38 0.00 46.11 5.34
981 1069 1.226688 CGATCGGAAGAGCTTCGCA 60.227 57.895 7.38 0.00 46.11 5.10
982 1070 0.318275 ATCGATCGGAAGAGCTTCGC 60.318 55.000 16.41 0.00 46.11 4.70
983 1071 1.403493 CATCGATCGGAAGAGCTTCG 58.597 55.000 16.41 0.00 46.11 3.79
1110 1268 0.038067 CACATGTACCCGTCCGTGAA 60.038 55.000 0.00 0.00 0.00 3.18
1111 1269 1.180456 ACACATGTACCCGTCCGTGA 61.180 55.000 0.00 0.00 0.00 4.35
1112 1270 0.320073 AACACATGTACCCGTCCGTG 60.320 55.000 0.00 0.00 0.00 4.94
1113 1271 0.037975 GAACACATGTACCCGTCCGT 60.038 55.000 0.00 0.00 0.00 4.69
1114 1272 0.245539 AGAACACATGTACCCGTCCG 59.754 55.000 0.00 0.00 0.00 4.79
1115 1273 2.417787 GGTAGAACACATGTACCCGTCC 60.418 54.545 0.00 0.00 41.13 4.79
1116 1274 2.494870 AGGTAGAACACATGTACCCGTC 59.505 50.000 10.51 0.00 46.72 4.79
1117 1275 2.494870 GAGGTAGAACACATGTACCCGT 59.505 50.000 10.51 0.00 46.72 5.28
1118 1276 2.758979 AGAGGTAGAACACATGTACCCG 59.241 50.000 10.51 0.00 46.72 5.28
1121 1279 5.646577 AGTCAGAGGTAGAACACATGTAC 57.353 43.478 0.00 0.00 0.00 2.90
1122 1280 5.047306 CCAAGTCAGAGGTAGAACACATGTA 60.047 44.000 0.00 0.00 0.00 2.29
1123 1281 4.262635 CCAAGTCAGAGGTAGAACACATGT 60.263 45.833 0.00 0.00 0.00 3.21
1135 1347 1.371183 TGGCGAACCAAGTCAGAGG 59.629 57.895 0.00 0.00 45.37 3.69
1149 1361 7.981142 TCTAGGTAATTTTAATCAGTTTGGCG 58.019 34.615 0.00 0.00 0.00 5.69
1197 1409 1.817520 CGTGGCCCGTTCATGCATA 60.818 57.895 0.00 0.00 0.00 3.14
1243 1478 3.615056 CACGACGTATCCTATGTGCAAAA 59.385 43.478 0.00 0.00 0.00 2.44
1252 1487 2.169144 TGAGAGGACACGACGTATCCTA 59.831 50.000 26.95 9.96 43.12 2.94
1253 1488 1.065636 TGAGAGGACACGACGTATCCT 60.066 52.381 27.21 27.21 45.84 3.24
1254 1489 1.376543 TGAGAGGACACGACGTATCC 58.623 55.000 17.62 17.62 0.00 2.59
1255 1490 3.482722 TTTGAGAGGACACGACGTATC 57.517 47.619 0.00 0.00 0.00 2.24
1256 1491 3.928727 TTTTGAGAGGACACGACGTAT 57.071 42.857 0.00 0.00 0.00 3.06
1259 1494 2.408704 GTCATTTTGAGAGGACACGACG 59.591 50.000 0.00 0.00 0.00 5.12
1303 1538 0.383231 GGCGGGATCTTCTGCATTTG 59.617 55.000 5.32 0.00 40.61 2.32
1663 1898 2.202987 GCCAGCCGAGTCATCCAG 60.203 66.667 0.00 0.00 0.00 3.86
1671 1906 4.172512 AGCTCCATGCCAGCCGAG 62.173 66.667 10.46 1.36 44.23 4.63
1677 1912 3.731728 GGGACCAGCTCCATGCCA 61.732 66.667 0.00 0.00 41.63 4.92
1773 2008 3.913163 AGGAAGAGAAACAGAGGGAACAT 59.087 43.478 0.00 0.00 0.00 2.71
1817 2055 1.427020 GCCATTGCGTCTGAGAAGC 59.573 57.895 13.47 13.47 37.54 3.86
2251 2494 3.365265 GCAAGTTGACGGGGCAGG 61.365 66.667 7.16 0.00 0.00 4.85
2252 2495 3.365265 GGCAAGTTGACGGGGCAG 61.365 66.667 7.16 0.00 0.00 4.85
2253 2496 3.723097 TTGGCAAGTTGACGGGGCA 62.723 57.895 7.16 0.00 0.00 5.36
2254 2497 1.815817 ATTTGGCAAGTTGACGGGGC 61.816 55.000 7.16 0.00 0.00 5.80
2255 2498 0.038343 CATTTGGCAAGTTGACGGGG 60.038 55.000 7.16 0.00 0.00 5.73
2275 2518 1.353103 GCATGCACATACGGTCAGC 59.647 57.895 14.21 0.00 0.00 4.26
2576 2844 2.780595 CCAGGTAATTCCAGGCGTG 58.219 57.895 0.00 0.00 36.09 5.34
2615 2883 2.977405 ATTGCTTTCGTTCAGAGTGC 57.023 45.000 0.00 0.00 0.00 4.40
2641 2909 9.382244 GTGCATTTGAATAGTAATTATCCGTTC 57.618 33.333 0.00 0.00 0.00 3.95
2656 2924 6.128391 GCATTTGATTGAGTGTGCATTTGAAT 60.128 34.615 0.00 0.00 33.09 2.57
2672 2940 4.746535 TGATCCAGCATTGCATTTGATT 57.253 36.364 11.91 0.00 0.00 2.57
2673 2941 4.955811 ATGATCCAGCATTGCATTTGAT 57.044 36.364 11.91 6.66 0.00 2.57
2674 2942 4.689071 GAATGATCCAGCATTGCATTTGA 58.311 39.130 11.91 1.86 38.53 2.69
2675 2943 3.489416 CGAATGATCCAGCATTGCATTTG 59.511 43.478 11.91 0.16 38.53 2.32
2676 2944 3.131577 ACGAATGATCCAGCATTGCATTT 59.868 39.130 11.91 0.00 38.53 2.32
2677 2945 2.691526 ACGAATGATCCAGCATTGCATT 59.308 40.909 11.91 0.24 38.53 3.56
2678 2946 2.292569 GACGAATGATCCAGCATTGCAT 59.707 45.455 11.91 0.00 38.53 3.96
2679 2947 1.672363 GACGAATGATCCAGCATTGCA 59.328 47.619 11.91 0.00 38.53 4.08
2680 2948 1.945394 AGACGAATGATCCAGCATTGC 59.055 47.619 0.00 0.00 38.53 3.56
2681 2949 2.547211 GGAGACGAATGATCCAGCATTG 59.453 50.000 0.00 0.00 38.53 2.82
2682 2950 2.437281 AGGAGACGAATGATCCAGCATT 59.563 45.455 0.00 0.00 40.96 3.56
2683 2951 2.036992 GAGGAGACGAATGATCCAGCAT 59.963 50.000 0.00 0.00 35.45 3.79
2684 2952 1.410517 GAGGAGACGAATGATCCAGCA 59.589 52.381 0.00 0.00 35.45 4.41
2706 3002 8.116136 GCTTAAATTACTGCATTGCATTTTACC 58.884 33.333 12.53 5.24 38.13 2.85
2708 3004 8.871862 CAGCTTAAATTACTGCATTGCATTTTA 58.128 29.630 12.53 10.86 38.13 1.52
2772 3069 5.238650 AGTTTCTTGGATACTTTGTTCACCG 59.761 40.000 0.00 0.00 37.61 4.94
2779 3076 6.795399 ACACACAAGTTTCTTGGATACTTTG 58.205 36.000 12.95 4.20 33.05 2.77
2780 3077 8.514330 TTACACACAAGTTTCTTGGATACTTT 57.486 30.769 12.95 0.00 33.05 2.66
2798 3095 5.940192 TTGTCCACATGAAGATTACACAC 57.060 39.130 0.00 0.00 0.00 3.82
2846 3143 1.217882 CGTCGACTTGCACCTTTTCT 58.782 50.000 14.70 0.00 0.00 2.52
2851 3148 2.050351 CGACGTCGACTTGCACCT 60.050 61.111 33.35 0.00 43.02 4.00
2926 3223 4.771356 TCGGCGTCGTACAGCAGC 62.771 66.667 10.18 0.00 37.69 5.25
2927 3224 2.874780 GTCGGCGTCGTACAGCAG 60.875 66.667 10.18 3.66 37.69 4.24
3099 3397 6.422776 AAACAGTTTTGAGGTATATGAGCG 57.577 37.500 0.00 0.00 0.00 5.03
3112 3410 6.265577 AGAGTGAAATCGGAAAACAGTTTTG 58.734 36.000 16.21 3.04 31.94 2.44
3145 3443 5.163530 GGAGGACCGTTCAAAAAGGTAAAAA 60.164 40.000 0.00 0.00 38.57 1.94
3146 3444 4.338964 GGAGGACCGTTCAAAAAGGTAAAA 59.661 41.667 0.00 0.00 38.57 1.52
3147 3445 3.884693 GGAGGACCGTTCAAAAAGGTAAA 59.115 43.478 0.00 0.00 38.57 2.01
3148 3446 3.136992 AGGAGGACCGTTCAAAAAGGTAA 59.863 43.478 0.00 0.00 41.83 2.85
3149 3447 2.707257 AGGAGGACCGTTCAAAAAGGTA 59.293 45.455 0.00 0.00 41.83 3.08
3150 3448 1.493446 AGGAGGACCGTTCAAAAAGGT 59.507 47.619 0.00 0.00 41.83 3.50
3151 3449 2.271944 AGGAGGACCGTTCAAAAAGG 57.728 50.000 0.00 0.00 41.83 3.11
3152 3450 3.251004 CAGAAGGAGGACCGTTCAAAAAG 59.749 47.826 6.95 0.00 41.83 2.27
3153 3451 3.211045 CAGAAGGAGGACCGTTCAAAAA 58.789 45.455 6.95 0.00 41.83 1.94
3154 3452 2.486548 CCAGAAGGAGGACCGTTCAAAA 60.487 50.000 6.95 0.00 41.83 2.44
3155 3453 1.071699 CCAGAAGGAGGACCGTTCAAA 59.928 52.381 6.95 0.00 41.83 2.69
3156 3454 0.685097 CCAGAAGGAGGACCGTTCAA 59.315 55.000 6.95 0.00 41.83 2.69
3157 3455 0.178944 TCCAGAAGGAGGACCGTTCA 60.179 55.000 6.95 0.00 39.61 3.18
3158 3456 2.667348 TCCAGAAGGAGGACCGTTC 58.333 57.895 0.00 0.00 39.61 3.95
3159 3457 4.968553 TCCAGAAGGAGGACCGTT 57.031 55.556 0.00 0.00 39.61 4.44
3164 3462 2.683933 GCCGGTCCAGAAGGAGGA 60.684 66.667 1.90 0.00 46.92 3.71
3165 3463 2.685380 AGCCGGTCCAGAAGGAGG 60.685 66.667 1.90 0.00 46.92 4.30
3166 3464 2.581354 CAGCCGGTCCAGAAGGAG 59.419 66.667 1.90 0.00 46.92 3.69
3167 3465 3.706373 GCAGCCGGTCCAGAAGGA 61.706 66.667 1.90 0.00 43.21 3.36
3168 3466 3.965539 CTGCAGCCGGTCCAGAAGG 62.966 68.421 0.00 0.00 0.00 3.46
3169 3467 2.435586 CTGCAGCCGGTCCAGAAG 60.436 66.667 0.00 0.00 0.00 2.85
3170 3468 4.704833 GCTGCAGCCGGTCCAGAA 62.705 66.667 28.76 0.00 34.31 3.02
3187 3485 2.131709 TATGAGGAAGACCCCGCCG 61.132 63.158 0.00 0.00 36.73 6.46
3188 3486 1.446366 GTATGAGGAAGACCCCGCC 59.554 63.158 0.00 0.00 36.73 6.13
3189 3487 1.067582 CGTATGAGGAAGACCCCGC 59.932 63.158 0.00 0.00 36.73 6.13
3190 3488 1.740285 CCGTATGAGGAAGACCCCG 59.260 63.158 0.00 0.00 36.73 5.73
3191 3489 1.446366 GCCGTATGAGGAAGACCCC 59.554 63.158 0.00 0.00 36.73 4.95
3192 3490 1.335132 TGGCCGTATGAGGAAGACCC 61.335 60.000 0.00 0.00 36.73 4.46
3193 3491 0.759346 ATGGCCGTATGAGGAAGACC 59.241 55.000 0.00 0.00 0.00 3.85
3194 3492 1.139058 ACATGGCCGTATGAGGAAGAC 59.861 52.381 9.94 0.00 0.00 3.01
3195 3493 1.138859 CACATGGCCGTATGAGGAAGA 59.861 52.381 9.94 0.00 0.00 2.87
3196 3494 1.586422 CACATGGCCGTATGAGGAAG 58.414 55.000 9.94 0.00 0.00 3.46
3197 3495 0.463654 GCACATGGCCGTATGAGGAA 60.464 55.000 7.62 0.00 36.11 3.36
3198 3496 1.146041 GCACATGGCCGTATGAGGA 59.854 57.895 7.62 0.00 36.11 3.71
3199 3497 1.146930 AGCACATGGCCGTATGAGG 59.853 57.895 7.62 1.64 46.50 3.86
3200 3498 0.462581 ACAGCACATGGCCGTATGAG 60.463 55.000 7.62 1.52 46.50 2.90
3201 3499 0.744057 CACAGCACATGGCCGTATGA 60.744 55.000 7.62 0.00 46.50 2.15
3202 3500 1.717791 CCACAGCACATGGCCGTATG 61.718 60.000 0.00 0.00 46.50 2.39
3203 3501 1.451927 CCACAGCACATGGCCGTAT 60.452 57.895 0.00 0.00 46.50 3.06
3204 3502 2.046411 CCACAGCACATGGCCGTA 60.046 61.111 0.00 0.00 46.50 4.02
3205 3503 4.269523 ACCACAGCACATGGCCGT 62.270 61.111 0.00 0.00 46.50 5.68
3206 3504 3.740397 CACCACAGCACATGGCCG 61.740 66.667 0.00 0.00 46.50 6.13
3207 3505 1.660560 GATCACCACAGCACATGGCC 61.661 60.000 0.00 0.00 46.50 5.36
3208 3506 0.961857 TGATCACCACAGCACATGGC 60.962 55.000 0.00 0.00 41.31 4.40
3209 3507 1.092348 CTGATCACCACAGCACATGG 58.908 55.000 0.00 0.00 43.43 3.66
3221 3519 3.132160 CTCATCTCATGGTGCTGATCAC 58.868 50.000 0.00 0.00 44.90 3.06
3222 3520 3.036091 TCTCATCTCATGGTGCTGATCA 58.964 45.455 0.00 0.00 0.00 2.92
3223 3521 3.391965 GTCTCATCTCATGGTGCTGATC 58.608 50.000 0.00 0.00 0.00 2.92
3224 3522 2.104451 GGTCTCATCTCATGGTGCTGAT 59.896 50.000 0.00 0.00 0.00 2.90
3225 3523 1.483827 GGTCTCATCTCATGGTGCTGA 59.516 52.381 0.00 0.00 0.00 4.26
3226 3524 1.208776 TGGTCTCATCTCATGGTGCTG 59.791 52.381 0.00 0.00 0.00 4.41
3227 3525 1.576577 TGGTCTCATCTCATGGTGCT 58.423 50.000 0.00 0.00 0.00 4.40
3228 3526 2.492012 GATGGTCTCATCTCATGGTGC 58.508 52.381 0.00 0.00 44.73 5.01
3229 3527 2.436911 TGGATGGTCTCATCTCATGGTG 59.563 50.000 6.37 0.00 46.70 4.17
3230 3528 2.767972 TGGATGGTCTCATCTCATGGT 58.232 47.619 6.37 0.00 46.70 3.55
3231 3529 3.118149 TGTTGGATGGTCTCATCTCATGG 60.118 47.826 6.37 0.00 46.70 3.66
3232 3530 4.146745 TGTTGGATGGTCTCATCTCATG 57.853 45.455 6.37 0.00 46.70 3.07
3233 3531 4.659368 AGATGTTGGATGGTCTCATCTCAT 59.341 41.667 6.37 8.34 46.70 2.90
3234 3532 4.035814 AGATGTTGGATGGTCTCATCTCA 58.964 43.478 6.37 4.82 46.70 3.27
3235 3533 4.378774 CAGATGTTGGATGGTCTCATCTC 58.621 47.826 6.37 0.00 46.70 2.75
3236 3534 3.433314 GCAGATGTTGGATGGTCTCATCT 60.433 47.826 6.37 0.00 46.70 2.90
3237 3535 2.877168 GCAGATGTTGGATGGTCTCATC 59.123 50.000 0.00 0.00 46.78 2.92
3238 3536 2.508716 AGCAGATGTTGGATGGTCTCAT 59.491 45.455 0.00 0.00 36.09 2.90
3239 3537 1.911357 AGCAGATGTTGGATGGTCTCA 59.089 47.619 0.00 0.00 0.00 3.27
3240 3538 2.706339 AGCAGATGTTGGATGGTCTC 57.294 50.000 0.00 0.00 0.00 3.36
3241 3539 2.840038 TGTAGCAGATGTTGGATGGTCT 59.160 45.455 0.00 0.00 0.00 3.85
3242 3540 2.939103 GTGTAGCAGATGTTGGATGGTC 59.061 50.000 0.00 0.00 0.00 4.02
3243 3541 2.677902 CGTGTAGCAGATGTTGGATGGT 60.678 50.000 0.00 0.00 0.00 3.55
3244 3542 1.935873 CGTGTAGCAGATGTTGGATGG 59.064 52.381 0.00 0.00 0.00 3.51
3245 3543 1.935873 CCGTGTAGCAGATGTTGGATG 59.064 52.381 0.00 0.00 0.00 3.51
3246 3544 1.555075 ACCGTGTAGCAGATGTTGGAT 59.445 47.619 0.00 0.00 0.00 3.41
3247 3545 0.973632 ACCGTGTAGCAGATGTTGGA 59.026 50.000 0.00 0.00 0.00 3.53
3248 3546 1.464608 CAACCGTGTAGCAGATGTTGG 59.535 52.381 0.00 0.00 31.77 3.77
3249 3547 1.135972 GCAACCGTGTAGCAGATGTTG 60.136 52.381 0.00 0.00 36.92 3.33
3250 3548 1.156736 GCAACCGTGTAGCAGATGTT 58.843 50.000 0.00 0.00 0.00 2.71
3251 3549 1.014044 CGCAACCGTGTAGCAGATGT 61.014 55.000 0.00 0.00 0.00 3.06
3252 3550 1.709760 CGCAACCGTGTAGCAGATG 59.290 57.895 0.00 0.00 0.00 2.90
3253 3551 4.185413 CGCAACCGTGTAGCAGAT 57.815 55.556 0.00 0.00 0.00 2.90
3263 3561 2.726912 CTTGCAGCAACGCAACCG 60.727 61.111 2.83 0.00 46.61 4.44
3264 3562 2.355009 CCTTGCAGCAACGCAACC 60.355 61.111 2.83 0.00 46.61 3.77
3265 3563 3.032033 GCCTTGCAGCAACGCAAC 61.032 61.111 20.42 0.00 46.61 4.17
3273 3571 0.668401 GTCCAAACATGCCTTGCAGC 60.668 55.000 0.00 0.00 43.65 5.25
3274 3572 0.387622 CGTCCAAACATGCCTTGCAG 60.388 55.000 0.00 0.00 43.65 4.41
3275 3573 1.106351 ACGTCCAAACATGCCTTGCA 61.106 50.000 0.00 0.00 44.86 4.08
3276 3574 0.387239 GACGTCCAAACATGCCTTGC 60.387 55.000 3.51 0.00 0.00 4.01
3277 3575 0.240945 GGACGTCCAAACATGCCTTG 59.759 55.000 29.75 0.00 35.64 3.61
3278 3576 0.893727 GGGACGTCCAAACATGCCTT 60.894 55.000 34.40 0.00 37.91 4.35
3279 3577 1.303317 GGGACGTCCAAACATGCCT 60.303 57.895 34.40 0.00 37.91 4.75
3280 3578 1.303317 AGGGACGTCCAAACATGCC 60.303 57.895 34.40 15.38 38.24 4.40
3281 3579 1.305930 GGAGGGACGTCCAAACATGC 61.306 60.000 34.40 16.12 36.51 4.06
3282 3580 0.324943 AGGAGGGACGTCCAAACATG 59.675 55.000 34.40 0.00 39.34 3.21
3283 3581 1.831736 CTAGGAGGGACGTCCAAACAT 59.168 52.381 34.40 23.01 39.34 2.71
3284 3582 1.263356 CTAGGAGGGACGTCCAAACA 58.737 55.000 34.40 14.80 39.34 2.83
3285 3583 0.108281 GCTAGGAGGGACGTCCAAAC 60.108 60.000 34.40 22.54 39.34 2.93
3286 3584 0.543410 TGCTAGGAGGGACGTCCAAA 60.543 55.000 34.40 14.08 39.34 3.28
3287 3585 0.970937 CTGCTAGGAGGGACGTCCAA 60.971 60.000 34.40 13.74 39.34 3.53
3288 3586 1.379977 CTGCTAGGAGGGACGTCCA 60.380 63.158 34.40 14.02 39.34 4.02
3289 3587 1.380112 ACTGCTAGGAGGGACGTCC 60.380 63.158 27.04 27.04 36.79 4.79
3290 3588 0.680280 TCACTGCTAGGAGGGACGTC 60.680 60.000 12.86 7.13 0.00 4.34
3291 3589 0.681564 CTCACTGCTAGGAGGGACGT 60.682 60.000 12.86 0.00 0.00 4.34
3292 3590 1.388065 CCTCACTGCTAGGAGGGACG 61.388 65.000 12.86 5.05 45.62 4.79
3293 3591 2.510664 CCTCACTGCTAGGAGGGAC 58.489 63.158 12.86 0.00 45.62 4.46
3297 3595 3.096092 AGTCTTTCCTCACTGCTAGGAG 58.904 50.000 10.09 10.09 43.90 3.69
3298 3596 2.828520 CAGTCTTTCCTCACTGCTAGGA 59.171 50.000 0.00 0.00 41.47 2.94
3299 3597 2.093764 CCAGTCTTTCCTCACTGCTAGG 60.094 54.545 0.00 0.00 39.03 3.02
3300 3598 2.093764 CCCAGTCTTTCCTCACTGCTAG 60.094 54.545 0.00 0.00 39.03 3.42
3301 3599 1.902508 CCCAGTCTTTCCTCACTGCTA 59.097 52.381 0.00 0.00 39.03 3.49
3302 3600 0.689623 CCCAGTCTTTCCTCACTGCT 59.310 55.000 0.00 0.00 39.03 4.24
3303 3601 0.398318 ACCCAGTCTTTCCTCACTGC 59.602 55.000 0.00 0.00 39.03 4.40
3304 3602 1.271054 CCACCCAGTCTTTCCTCACTG 60.271 57.143 0.00 0.00 39.90 3.66
3305 3603 1.059913 CCACCCAGTCTTTCCTCACT 58.940 55.000 0.00 0.00 0.00 3.41
3306 3604 0.036875 CCCACCCAGTCTTTCCTCAC 59.963 60.000 0.00 0.00 0.00 3.51
3307 3605 1.133809 CCCCACCCAGTCTTTCCTCA 61.134 60.000 0.00 0.00 0.00 3.86
3308 3606 0.840722 TCCCCACCCAGTCTTTCCTC 60.841 60.000 0.00 0.00 0.00 3.71
3309 3607 0.178831 ATCCCCACCCAGTCTTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
3310 3608 0.034089 CATCCCCACCCAGTCTTTCC 60.034 60.000 0.00 0.00 0.00 3.13
3311 3609 0.681243 GCATCCCCACCCAGTCTTTC 60.681 60.000 0.00 0.00 0.00 2.62
3312 3610 1.384191 GCATCCCCACCCAGTCTTT 59.616 57.895 0.00 0.00 0.00 2.52
3313 3611 2.616458 GGCATCCCCACCCAGTCTT 61.616 63.158 0.00 0.00 0.00 3.01
3314 3612 3.017581 GGCATCCCCACCCAGTCT 61.018 66.667 0.00 0.00 0.00 3.24
3315 3613 3.338250 TGGCATCCCCACCCAGTC 61.338 66.667 0.00 0.00 39.18 3.51
3316 3614 3.341629 CTGGCATCCCCACCCAGT 61.342 66.667 0.00 0.00 40.92 4.00
3317 3615 2.389449 ATCTGGCATCCCCACCCAG 61.389 63.158 0.00 0.00 45.88 4.45
3318 3616 2.287117 ATCTGGCATCCCCACCCA 60.287 61.111 0.00 0.00 39.18 4.51
3319 3617 2.196776 CATCTGGCATCCCCACCC 59.803 66.667 0.00 0.00 39.18 4.61
3320 3618 2.520260 GCATCTGGCATCCCCACC 60.520 66.667 0.00 0.00 43.97 4.61
3321 3619 2.903855 CGCATCTGGCATCCCCAC 60.904 66.667 0.00 0.00 45.17 4.61
3322 3620 4.193893 CCGCATCTGGCATCCCCA 62.194 66.667 0.00 0.00 45.17 4.96
3323 3621 3.877450 TCCGCATCTGGCATCCCC 61.877 66.667 0.00 0.00 45.17 4.81
3324 3622 2.592861 GTCCGCATCTGGCATCCC 60.593 66.667 0.00 0.00 45.17 3.85
3325 3623 1.596477 GAGTCCGCATCTGGCATCC 60.596 63.158 0.00 0.00 45.17 3.51
3326 3624 1.596477 GGAGTCCGCATCTGGCATC 60.596 63.158 0.00 0.00 45.17 3.91
3327 3625 2.507944 GGAGTCCGCATCTGGCAT 59.492 61.111 0.00 0.00 45.17 4.40
3328 3626 4.147449 CGGAGTCCGCATCTGGCA 62.147 66.667 20.50 0.00 45.17 4.92
3338 3636 3.480133 CCCCATGGGTCGGAGTCC 61.480 72.222 29.33 0.00 38.25 3.85
3349 3647 2.283101 CCACCACACCACCCCATG 60.283 66.667 0.00 0.00 0.00 3.66
3350 3648 2.451493 TCCACCACACCACCCCAT 60.451 61.111 0.00 0.00 0.00 4.00
3351 3649 3.174987 CTCCACCACACCACCCCA 61.175 66.667 0.00 0.00 0.00 4.96
3352 3650 3.175710 ACTCCACCACACCACCCC 61.176 66.667 0.00 0.00 0.00 4.95
3353 3651 2.113139 CACTCCACCACACCACCC 59.887 66.667 0.00 0.00 0.00 4.61
3354 3652 2.594592 GCACTCCACCACACCACC 60.595 66.667 0.00 0.00 0.00 4.61
3355 3653 2.186826 GTGCACTCCACCACACCAC 61.187 63.158 10.32 0.00 38.55 4.16
3356 3654 2.191908 GTGCACTCCACCACACCA 59.808 61.111 10.32 0.00 38.55 4.17
3357 3655 2.191908 TGTGCACTCCACCACACC 59.808 61.111 19.41 0.00 44.01 4.16
3359 3657 2.203001 CGTGTGCACTCCACCACA 60.203 61.111 19.41 0.00 44.01 4.17
3360 3658 2.972505 CCGTGTGCACTCCACCAC 60.973 66.667 19.41 5.57 44.01 4.16
3361 3659 4.248842 CCCGTGTGCACTCCACCA 62.249 66.667 19.41 0.00 44.01 4.17
3363 3661 4.250305 ACCCCGTGTGCACTCCAC 62.250 66.667 19.41 7.15 44.90 4.02
3364 3662 4.248842 CACCCCGTGTGCACTCCA 62.249 66.667 19.41 0.00 38.34 3.86
3379 3677 3.873883 GATCGCAGCTGCAGGCAC 61.874 66.667 36.03 18.70 44.79 5.01
3380 3678 4.397832 TGATCGCAGCTGCAGGCA 62.398 61.111 36.03 25.97 44.79 4.75
3381 3679 3.873883 GTGATCGCAGCTGCAGGC 61.874 66.667 36.03 23.83 42.21 4.85
3382 3680 3.561213 CGTGATCGCAGCTGCAGG 61.561 66.667 36.03 22.05 42.21 4.85
3383 3681 3.561213 CCGTGATCGCAGCTGCAG 61.561 66.667 36.03 27.36 42.21 4.41
3386 3684 1.948138 CTAGCCGTGATCGCAGCTG 60.948 63.158 24.01 10.11 35.90 4.24
3387 3685 2.415010 CTAGCCGTGATCGCAGCT 59.585 61.111 20.12 20.12 37.98 4.24
3388 3686 2.629050 TTCCTAGCCGTGATCGCAGC 62.629 60.000 6.35 6.35 35.54 5.25
3389 3687 0.032678 ATTCCTAGCCGTGATCGCAG 59.967 55.000 7.12 0.00 35.54 5.18
3390 3688 0.249447 CATTCCTAGCCGTGATCGCA 60.249 55.000 7.12 0.00 35.54 5.10
3391 3689 0.249489 ACATTCCTAGCCGTGATCGC 60.249 55.000 0.00 0.00 35.54 4.58
3392 3690 2.225068 AACATTCCTAGCCGTGATCG 57.775 50.000 0.00 0.00 0.00 3.69
3393 3691 2.614057 CCAAACATTCCTAGCCGTGATC 59.386 50.000 0.00 0.00 0.00 2.92
3394 3692 2.238646 TCCAAACATTCCTAGCCGTGAT 59.761 45.455 0.00 0.00 0.00 3.06
3395 3693 1.626321 TCCAAACATTCCTAGCCGTGA 59.374 47.619 0.00 0.00 0.00 4.35
3396 3694 1.737793 GTCCAAACATTCCTAGCCGTG 59.262 52.381 0.00 0.00 0.00 4.94
3397 3695 1.339727 GGTCCAAACATTCCTAGCCGT 60.340 52.381 0.00 0.00 0.00 5.68
3427 3725 1.339610 CTGGAGATGCTCTTAGACCGG 59.660 57.143 0.00 0.00 0.00 5.28
3428 3726 1.269517 GCTGGAGATGCTCTTAGACCG 60.270 57.143 0.00 0.00 0.00 4.79
3436 3734 4.521062 ACGCGGCTGGAGATGCTC 62.521 66.667 12.47 0.00 0.00 4.26
3437 3735 4.521062 GACGCGGCTGGAGATGCT 62.521 66.667 12.47 0.00 0.00 3.79
3438 3736 4.521062 AGACGCGGCTGGAGATGC 62.521 66.667 17.28 0.00 0.00 3.91
3439 3737 2.279120 GAGACGCGGCTGGAGATG 60.279 66.667 25.24 0.00 0.00 2.90
3440 3738 3.532155 GGAGACGCGGCTGGAGAT 61.532 66.667 25.24 0.00 0.00 2.75
3442 3740 4.069232 TTGGAGACGCGGCTGGAG 62.069 66.667 25.24 0.00 0.00 3.86
3443 3741 4.373116 GTTGGAGACGCGGCTGGA 62.373 66.667 25.24 0.71 0.00 3.86
3444 3742 4.680237 TGTTGGAGACGCGGCTGG 62.680 66.667 25.24 0.00 0.00 4.85
3445 3743 3.114616 CTGTTGGAGACGCGGCTG 61.115 66.667 25.24 0.00 0.00 4.85
3446 3744 4.379243 CCTGTTGGAGACGCGGCT 62.379 66.667 18.34 18.34 34.57 5.52
3447 3745 4.681978 ACCTGTTGGAGACGCGGC 62.682 66.667 12.47 7.86 37.04 6.53
3448 3746 1.566018 GAAACCTGTTGGAGACGCGG 61.566 60.000 12.47 0.00 37.04 6.46
3449 3747 0.600255 AGAAACCTGTTGGAGACGCG 60.600 55.000 3.53 3.53 37.04 6.01
3450 3748 1.149148 GAGAAACCTGTTGGAGACGC 58.851 55.000 0.00 0.00 37.04 5.19
3451 3749 2.408050 CTGAGAAACCTGTTGGAGACG 58.592 52.381 0.00 0.00 37.04 4.18
3452 3750 2.551071 CCCTGAGAAACCTGTTGGAGAC 60.551 54.545 0.00 0.00 37.04 3.36
3453 3751 1.699634 CCCTGAGAAACCTGTTGGAGA 59.300 52.381 0.00 0.00 37.04 3.71
3454 3752 1.884067 GCCCTGAGAAACCTGTTGGAG 60.884 57.143 0.00 0.00 37.04 3.86
3455 3753 0.110486 GCCCTGAGAAACCTGTTGGA 59.890 55.000 0.00 0.00 37.04 3.53
3456 3754 1.237285 CGCCCTGAGAAACCTGTTGG 61.237 60.000 0.00 0.00 39.83 3.77
3457 3755 0.250295 TCGCCCTGAGAAACCTGTTG 60.250 55.000 0.00 0.00 0.00 3.33
3458 3756 0.250338 GTCGCCCTGAGAAACCTGTT 60.250 55.000 0.00 0.00 0.00 3.16
3459 3757 1.122019 AGTCGCCCTGAGAAACCTGT 61.122 55.000 0.00 0.00 0.00 4.00
3460 3758 0.035458 AAGTCGCCCTGAGAAACCTG 59.965 55.000 0.00 0.00 0.00 4.00
3461 3759 0.765510 AAAGTCGCCCTGAGAAACCT 59.234 50.000 0.00 0.00 0.00 3.50
3462 3760 1.535896 GAAAAGTCGCCCTGAGAAACC 59.464 52.381 0.00 0.00 0.00 3.27
3463 3761 2.218603 TGAAAAGTCGCCCTGAGAAAC 58.781 47.619 0.00 0.00 0.00 2.78
3464 3762 2.631160 TGAAAAGTCGCCCTGAGAAA 57.369 45.000 0.00 0.00 0.00 2.52
3465 3763 2.224523 ACATGAAAAGTCGCCCTGAGAA 60.225 45.455 0.00 0.00 0.00 2.87
3466 3764 1.347707 ACATGAAAAGTCGCCCTGAGA 59.652 47.619 0.00 0.00 0.00 3.27
3467 3765 1.813513 ACATGAAAAGTCGCCCTGAG 58.186 50.000 0.00 0.00 0.00 3.35
3468 3766 1.879380 CAACATGAAAAGTCGCCCTGA 59.121 47.619 0.00 0.00 0.00 3.86
3469 3767 1.068333 CCAACATGAAAAGTCGCCCTG 60.068 52.381 0.00 0.00 0.00 4.45
3470 3768 1.247567 CCAACATGAAAAGTCGCCCT 58.752 50.000 0.00 0.00 0.00 5.19
3471 3769 0.388520 GCCAACATGAAAAGTCGCCC 60.389 55.000 0.00 0.00 0.00 6.13
3472 3770 0.729140 CGCCAACATGAAAAGTCGCC 60.729 55.000 0.00 0.00 0.00 5.54
3473 3771 0.040425 ACGCCAACATGAAAAGTCGC 60.040 50.000 0.00 0.00 0.00 5.19
3474 3772 1.721489 CGACGCCAACATGAAAAGTCG 60.721 52.381 15.90 15.90 42.65 4.18
3475 3773 1.399727 CCGACGCCAACATGAAAAGTC 60.400 52.381 0.00 1.54 0.00 3.01
3476 3774 0.591170 CCGACGCCAACATGAAAAGT 59.409 50.000 0.00 0.00 0.00 2.66
3477 3775 0.871722 TCCGACGCCAACATGAAAAG 59.128 50.000 0.00 0.00 0.00 2.27
3478 3776 1.309950 TTCCGACGCCAACATGAAAA 58.690 45.000 0.00 0.00 0.00 2.29
3479 3777 1.309950 TTTCCGACGCCAACATGAAA 58.690 45.000 0.00 0.00 0.00 2.69
3480 3778 1.309950 TTTTCCGACGCCAACATGAA 58.690 45.000 0.00 0.00 0.00 2.57
3481 3779 1.309950 TTTTTCCGACGCCAACATGA 58.690 45.000 0.00 0.00 0.00 3.07
3482 3780 3.855630 TTTTTCCGACGCCAACATG 57.144 47.368 0.00 0.00 0.00 3.21
3497 3795 2.258726 GCCGCGACTGAGGGTTTTT 61.259 57.895 8.23 0.00 35.26 1.94
3498 3796 2.668550 GCCGCGACTGAGGGTTTT 60.669 61.111 8.23 0.00 35.26 2.43
3499 3797 4.699522 GGCCGCGACTGAGGGTTT 62.700 66.667 8.23 0.00 35.26 3.27
3503 3801 4.680237 TTGTGGCCGCGACTGAGG 62.680 66.667 8.23 0.00 38.24 3.86
3504 3802 2.664851 TTTGTGGCCGCGACTGAG 60.665 61.111 8.23 0.00 0.00 3.35
3505 3803 2.970324 GTTTGTGGCCGCGACTGA 60.970 61.111 8.23 0.00 0.00 3.41
3506 3804 4.025401 GGTTTGTGGCCGCGACTG 62.025 66.667 8.23 0.00 0.00 3.51
3513 3811 0.109919 GATTTCGACGGTTTGTGGCC 60.110 55.000 0.00 0.00 0.00 5.36
3514 3812 0.109919 GGATTTCGACGGTTTGTGGC 60.110 55.000 0.00 0.00 0.00 5.01
3515 3813 1.463444 GAGGATTTCGACGGTTTGTGG 59.537 52.381 0.00 0.00 0.00 4.17
3516 3814 1.463444 GGAGGATTTCGACGGTTTGTG 59.537 52.381 0.00 0.00 0.00 3.33
3517 3815 1.804601 GGAGGATTTCGACGGTTTGT 58.195 50.000 0.00 0.00 0.00 2.83
3518 3816 0.719465 CGGAGGATTTCGACGGTTTG 59.281 55.000 0.00 0.00 0.00 2.93
3519 3817 3.132863 CGGAGGATTTCGACGGTTT 57.867 52.632 0.00 0.00 0.00 3.27
3520 3818 4.904466 CGGAGGATTTCGACGGTT 57.096 55.556 0.00 0.00 0.00 4.44
3548 3846 3.065567 GATCGCCGGGCCCAAAAA 61.066 61.111 24.92 4.19 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.