Multiple sequence alignment - TraesCS3A01G284100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G284100 chr3A 100.000 7398 0 0 1 7398 512562781 512555384 0.000000e+00 13662.0
1 TraesCS3A01G284100 chr3D 93.512 2944 113 22 3807 6718 392959202 392956305 0.000000e+00 4307.0
2 TraesCS3A01G284100 chr3D 87.234 1927 89 65 1 1829 392961065 392959198 0.000000e+00 2050.0
3 TraesCS3A01G284100 chr3D 91.594 690 47 6 6710 7398 392954743 392954064 0.000000e+00 942.0
4 TraesCS3A01G284100 chr3D 77.876 113 23 2 6919 7030 92373142 92373253 1.330000e-07 69.4
5 TraesCS3A01G284100 chr3B 94.562 2795 123 13 3807 6589 512745348 512742571 0.000000e+00 4292.0
6 TraesCS3A01G284100 chr3B 96.929 1693 50 2 1846 3537 172697965 172696274 0.000000e+00 2837.0
7 TraesCS3A01G284100 chr3B 96.755 1695 55 0 1846 3540 744589121 744587427 0.000000e+00 2826.0
8 TraesCS3A01G284100 chr3B 89.412 1105 54 27 781 1829 512746441 512745344 0.000000e+00 1334.0
9 TraesCS3A01G284100 chr3B 91.882 271 22 0 3539 3809 740344668 740344398 5.420000e-101 379.0
10 TraesCS3A01G284100 chr3B 88.255 298 29 3 271 567 512746967 512746675 1.180000e-92 351.0
11 TraesCS3A01G284100 chr1B 97.163 1692 48 0 1846 3537 628614768 628613077 0.000000e+00 2859.0
12 TraesCS3A01G284100 chr1B 90.110 273 26 1 3537 3808 189765001 189765273 3.280000e-93 353.0
13 TraesCS3A01G284100 chr6B 96.879 1698 51 2 1840 3537 117779277 117780972 0.000000e+00 2841.0
14 TraesCS3A01G284100 chr6B 78.226 248 39 9 6868 7113 42209528 42209294 2.150000e-30 145.0
15 TraesCS3A01G284100 chr7A 96.875 1696 50 3 1843 3537 732847449 732849142 0.000000e+00 2835.0
16 TraesCS3A01G284100 chr7A 96.691 272 9 0 3537 3808 535905720 535905991 3.150000e-123 453.0
17 TraesCS3A01G284100 chr7A 79.669 423 63 11 6934 7343 83024148 83023736 4.370000e-72 283.0
18 TraesCS3A01G284100 chr5A 96.757 1696 53 2 1843 3537 552878377 552880071 0.000000e+00 2826.0
19 TraesCS3A01G284100 chr5A 89.011 91 10 0 7308 7398 548918980 548918890 6.070000e-21 113.0
20 TraesCS3A01G284100 chr7B 96.860 1688 53 0 1846 3533 558891619 558889932 0.000000e+00 2824.0
21 TraesCS3A01G284100 chr7B 96.696 1695 55 1 1843 3537 448464029 448465722 0.000000e+00 2819.0
22 TraesCS3A01G284100 chr7B 91.667 276 21 2 3537 3810 477817206 477816931 1.510000e-101 381.0
23 TraesCS3A01G284100 chr7B 90.074 272 26 1 3537 3807 717161689 717161418 1.180000e-92 351.0
24 TraesCS3A01G284100 chr7B 90.074 272 26 1 3537 3807 717237162 717236891 1.180000e-92 351.0
25 TraesCS3A01G284100 chr7B 80.410 439 58 12 6934 7363 425226787 425226368 7.210000e-80 309.0
26 TraesCS3A01G284100 chr1A 96.749 1692 53 2 1846 3537 23200470 23198781 0.000000e+00 2819.0
27 TraesCS3A01G284100 chr1A 78.065 465 70 17 6944 7395 339099913 339100358 1.580000e-66 265.0
28 TraesCS3A01G284100 chr4D 81.599 538 79 9 6870 7395 484084025 484084554 1.910000e-115 427.0
29 TraesCS3A01G284100 chr4D 78.873 497 72 13 6868 7349 483861693 483861215 9.330000e-79 305.0
30 TraesCS3A01G284100 chr4D 89.474 114 12 0 7282 7395 484063211 484063324 2.150000e-30 145.0
31 TraesCS3A01G284100 chr2B 91.176 272 20 2 3537 3807 359484408 359484140 4.220000e-97 366.0
32 TraesCS3A01G284100 chr2A 89.531 277 27 2 3536 3811 209424302 209424027 4.250000e-92 350.0
33 TraesCS3A01G284100 chr2A 88.194 288 26 8 3537 3821 741108836 741108554 3.310000e-88 337.0
34 TraesCS3A01G284100 chr7D 82.421 347 45 8 6917 7252 192138741 192139082 9.390000e-74 289.0
35 TraesCS3A01G284100 chr4B 82.235 349 45 8 7058 7395 615267233 615267575 1.210000e-72 285.0
36 TraesCS3A01G284100 chr4B 77.264 497 79 18 6868 7349 614679553 614679076 2.050000e-65 261.0
37 TraesCS3A01G284100 chr4B 78.231 147 28 3 6882 7025 576446560 576446705 2.840000e-14 91.6
38 TraesCS3A01G284100 chr6A 79.032 248 37 9 6868 7113 23935197 23934963 9.940000e-34 156.0
39 TraesCS3A01G284100 chr5D 88.043 92 9 2 7308 7398 434930411 434930321 2.820000e-19 108.0
40 TraesCS3A01G284100 chr5D 94.444 54 2 1 7121 7174 497806546 497806598 1.710000e-11 82.4
41 TraesCS3A01G284100 chr5B 84.270 89 12 2 6943 7030 616681066 616681153 1.320000e-12 86.1
42 TraesCS3A01G284100 chrUn 75.385 195 29 11 6919 7111 65979266 65979089 7.960000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G284100 chr3A 512555384 512562781 7397 True 13662.000000 13662 100.000 1 7398 1 chr3A.!!$R1 7397
1 TraesCS3A01G284100 chr3D 392954064 392961065 7001 True 2433.000000 4307 90.780 1 7398 3 chr3D.!!$R1 7397
2 TraesCS3A01G284100 chr3B 172696274 172697965 1691 True 2837.000000 2837 96.929 1846 3537 1 chr3B.!!$R1 1691
3 TraesCS3A01G284100 chr3B 744587427 744589121 1694 True 2826.000000 2826 96.755 1846 3540 1 chr3B.!!$R3 1694
4 TraesCS3A01G284100 chr3B 512742571 512746967 4396 True 1992.333333 4292 90.743 271 6589 3 chr3B.!!$R4 6318
5 TraesCS3A01G284100 chr1B 628613077 628614768 1691 True 2859.000000 2859 97.163 1846 3537 1 chr1B.!!$R1 1691
6 TraesCS3A01G284100 chr6B 117779277 117780972 1695 False 2841.000000 2841 96.879 1840 3537 1 chr6B.!!$F1 1697
7 TraesCS3A01G284100 chr7A 732847449 732849142 1693 False 2835.000000 2835 96.875 1843 3537 1 chr7A.!!$F2 1694
8 TraesCS3A01G284100 chr5A 552878377 552880071 1694 False 2826.000000 2826 96.757 1843 3537 1 chr5A.!!$F1 1694
9 TraesCS3A01G284100 chr7B 558889932 558891619 1687 True 2824.000000 2824 96.860 1846 3533 1 chr7B.!!$R3 1687
10 TraesCS3A01G284100 chr7B 448464029 448465722 1693 False 2819.000000 2819 96.696 1843 3537 1 chr7B.!!$F1 1694
11 TraesCS3A01G284100 chr1A 23198781 23200470 1689 True 2819.000000 2819 96.749 1846 3537 1 chr1A.!!$R1 1691
12 TraesCS3A01G284100 chr4D 484084025 484084554 529 False 427.000000 427 81.599 6870 7395 1 chr4D.!!$F2 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
830 930 0.036875 TGCCTCGTCTCACTCTCTCA 59.963 55.0 0.00 0.00 0.00 3.27 F
1622 1761 0.335019 GGAATGTTTAGGGGCCAGGT 59.665 55.0 4.39 0.00 0.00 4.00 F
2728 2887 0.253894 AACTACCAATACCCACGCCC 59.746 55.0 0.00 0.00 0.00 6.13 F
3917 4092 0.317479 AAAGTCCGACCGAGGTCAAG 59.683 55.0 20.75 11.99 44.77 3.02 F
4993 5198 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.0 0.00 0.00 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2229 2388 0.321919 ATGGCTCGAGTGTGTGCATT 60.322 50.0 15.13 0.0 0.00 3.56 R
3567 3728 0.389948 GACGAAGGAGTGGTGCGAAT 60.390 55.0 0.00 0.0 0.00 3.34 R
4047 4225 0.037232 GTCCTCCTGGGTCGTCAAAG 60.037 60.0 0.00 0.0 36.25 2.77 R
5045 5250 0.249911 GTGCCGGTTGAACAGAGTCT 60.250 55.0 1.90 0.0 0.00 3.24 R
6932 8711 0.616395 TGAGGCCCGTCCATTCACTA 60.616 55.0 0.00 0.0 37.29 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.804748 CACTCCTTTTACAAGCCCGAC 59.195 52.381 0.00 0.00 0.00 4.79
73 74 1.716581 CTCAGCTCGAACGACACTTTC 59.283 52.381 0.00 0.00 0.00 2.62
75 76 0.663568 AGCTCGAACGACACTTTCCG 60.664 55.000 0.00 0.00 0.00 4.30
86 87 1.203994 ACACTTTCCGGTATCTCCACG 59.796 52.381 0.00 0.00 35.57 4.94
114 115 2.165641 CCTAGCCCAAAACCCGAAAATC 59.834 50.000 0.00 0.00 0.00 2.17
124 125 2.791655 ACCCGAAAATCCTCCTGAAAC 58.208 47.619 0.00 0.00 0.00 2.78
131 132 5.619981 CGAAAATCCTCCTGAAACCATGAAC 60.620 44.000 0.00 0.00 0.00 3.18
139 140 6.434028 CCTCCTGAAACCATGAACAAGATAAA 59.566 38.462 0.00 0.00 0.00 1.40
142 143 6.209391 CCTGAAACCATGAACAAGATAAACCT 59.791 38.462 0.00 0.00 0.00 3.50
144 145 5.982890 AACCATGAACAAGATAAACCTGG 57.017 39.130 0.00 0.00 0.00 4.45
147 148 6.074648 ACCATGAACAAGATAAACCTGGAAA 58.925 36.000 0.00 0.00 0.00 3.13
148 149 6.553100 ACCATGAACAAGATAAACCTGGAAAA 59.447 34.615 0.00 0.00 0.00 2.29
149 150 7.235399 ACCATGAACAAGATAAACCTGGAAAAT 59.765 33.333 0.00 0.00 0.00 1.82
150 151 7.546667 CCATGAACAAGATAAACCTGGAAAATG 59.453 37.037 0.00 0.00 0.00 2.32
152 153 7.885297 TGAACAAGATAAACCTGGAAAATGAG 58.115 34.615 0.00 0.00 0.00 2.90
153 154 6.840780 ACAAGATAAACCTGGAAAATGAGG 57.159 37.500 0.00 0.00 35.26 3.86
154 155 6.552008 ACAAGATAAACCTGGAAAATGAGGA 58.448 36.000 0.00 0.00 33.16 3.71
155 156 7.184862 ACAAGATAAACCTGGAAAATGAGGAT 58.815 34.615 0.00 0.00 33.16 3.24
157 158 7.651027 AGATAAACCTGGAAAATGAGGATTG 57.349 36.000 0.00 0.00 33.16 2.67
158 159 4.541973 AAACCTGGAAAATGAGGATTGC 57.458 40.909 0.00 0.00 33.16 3.56
159 160 2.094675 ACCTGGAAAATGAGGATTGCG 58.905 47.619 0.00 0.00 33.16 4.85
201 230 3.804329 GGGCCGGGCTGTCCATAA 61.804 66.667 28.80 0.00 34.36 1.90
203 232 2.270850 GCCGGGCTGTCCATAACA 59.729 61.111 12.87 0.00 36.18 2.41
223 253 0.238817 GGCCTATCGCACGAGTCTAG 59.761 60.000 0.00 0.00 40.31 2.43
227 257 1.604755 CTATCGCACGAGTCTAGGCTT 59.395 52.381 0.00 0.00 0.00 4.35
230 260 1.226717 GCACGAGTCTAGGCTTCCG 60.227 63.158 0.00 0.32 0.00 4.30
232 262 1.001145 ACGAGTCTAGGCTTCCGGT 60.001 57.895 9.87 0.00 0.00 5.28
248 278 4.665833 TCCGGTGAAAATCTCGTGATAT 57.334 40.909 0.00 0.00 31.70 1.63
249 279 4.368315 TCCGGTGAAAATCTCGTGATATG 58.632 43.478 0.00 0.00 31.70 1.78
250 280 3.059597 CCGGTGAAAATCTCGTGATATGC 60.060 47.826 0.00 0.00 31.70 3.14
251 281 3.555547 CGGTGAAAATCTCGTGATATGCA 59.444 43.478 0.00 0.00 31.70 3.96
252 282 4.033932 CGGTGAAAATCTCGTGATATGCAA 59.966 41.667 0.00 0.00 31.70 4.08
253 283 5.266242 GGTGAAAATCTCGTGATATGCAAC 58.734 41.667 0.00 0.00 31.70 4.17
254 284 5.163764 GGTGAAAATCTCGTGATATGCAACA 60.164 40.000 0.00 0.00 31.70 3.33
255 285 5.734498 GTGAAAATCTCGTGATATGCAACAC 59.266 40.000 0.00 10.58 31.70 3.32
293 323 7.591421 TGATCATAATCTACGTGGTAGGAAA 57.409 36.000 0.00 0.00 36.83 3.13
294 324 8.190326 TGATCATAATCTACGTGGTAGGAAAT 57.810 34.615 0.00 0.00 36.83 2.17
335 366 0.258774 TGTACCCTCTACCCGTACCC 59.741 60.000 0.00 0.00 33.02 3.69
375 406 3.234979 TTTTTACCGCGCAGGATGA 57.765 47.368 22.10 6.71 45.00 2.92
385 419 1.144716 GCAGGATGACAGATCGGCA 59.855 57.895 0.00 0.00 39.69 5.69
404 438 3.190118 GGCAAAGAGATTCCACAAGAGTG 59.810 47.826 0.00 0.00 45.47 3.51
438 472 2.658707 GGAGATACCATTCGCGCGC 61.659 63.158 27.95 23.91 38.79 6.86
453 487 1.631072 GCGCATAGTACGTGTGCTG 59.369 57.895 23.65 15.06 46.56 4.41
462 496 2.030185 AGTACGTGTGCTGAACCAGTAG 60.030 50.000 0.00 0.00 33.43 2.57
558 592 1.813753 CACCGGATAAGCCACACCG 60.814 63.158 9.46 0.00 44.16 4.94
677 711 4.394712 CCACTGTCGGTGCCCTCC 62.395 72.222 6.25 0.00 44.08 4.30
755 814 2.202566 GCTGCTCTACCGTTTCCATAC 58.797 52.381 0.00 0.00 0.00 2.39
762 821 2.623878 ACCGTTTCCATACACACACA 57.376 45.000 0.00 0.00 0.00 3.72
763 822 3.134574 ACCGTTTCCATACACACACAT 57.865 42.857 0.00 0.00 0.00 3.21
764 823 3.071479 ACCGTTTCCATACACACACATC 58.929 45.455 0.00 0.00 0.00 3.06
765 824 2.093625 CCGTTTCCATACACACACATCG 59.906 50.000 0.00 0.00 0.00 3.84
766 825 2.093625 CGTTTCCATACACACACATCGG 59.906 50.000 0.00 0.00 0.00 4.18
767 826 3.331150 GTTTCCATACACACACATCGGA 58.669 45.455 0.00 0.00 0.00 4.55
802 876 4.715130 CCACCTCCCCCGGTCTCA 62.715 72.222 0.00 0.00 34.29 3.27
803 877 2.606519 CACCTCCCCCGGTCTCAA 60.607 66.667 0.00 0.00 34.29 3.02
805 879 2.284699 CCTCCCCCGGTCTCAAGT 60.285 66.667 0.00 0.00 0.00 3.16
806 880 2.359967 CCTCCCCCGGTCTCAAGTC 61.360 68.421 0.00 0.00 0.00 3.01
807 881 1.305381 CTCCCCCGGTCTCAAGTCT 60.305 63.158 0.00 0.00 0.00 3.24
811 885 0.900647 CCCCGGTCTCAAGTCTCACT 60.901 60.000 0.00 0.00 0.00 3.41
812 886 0.244994 CCCGGTCTCAAGTCTCACTG 59.755 60.000 0.00 0.00 0.00 3.66
813 887 0.389166 CCGGTCTCAAGTCTCACTGC 60.389 60.000 0.00 0.00 0.00 4.40
828 928 0.037590 ACTGCCTCGTCTCACTCTCT 59.962 55.000 0.00 0.00 0.00 3.10
830 930 0.036875 TGCCTCGTCTCACTCTCTCA 59.963 55.000 0.00 0.00 0.00 3.27
990 1110 2.126071 CTCGCGCGAGGAAAAGGA 60.126 61.111 43.86 16.54 38.51 3.36
991 1111 2.431942 TCGCGCGAGGAAAAGGAC 60.432 61.111 31.40 0.00 0.00 3.85
992 1112 2.432628 CGCGCGAGGAAAAGGACT 60.433 61.111 28.94 0.00 0.00 3.85
993 1113 2.445438 CGCGCGAGGAAAAGGACTC 61.445 63.158 28.94 0.00 0.00 3.36
1244 1370 1.009903 CGTCGGTGATTTGTGGCGTA 61.010 55.000 0.00 0.00 0.00 4.42
1246 1372 1.326548 GTCGGTGATTTGTGGCGTATC 59.673 52.381 0.00 0.00 0.00 2.24
1391 1523 2.688958 CTGGCCTCTACTACCAGTGTAC 59.311 54.545 3.32 0.00 44.91 2.90
1484 1616 1.359459 GGCGTCGGGCTTTCTACTTG 61.359 60.000 0.00 0.00 42.94 3.16
1618 1757 2.039418 GAATGGGAATGTTTAGGGGCC 58.961 52.381 0.00 0.00 0.00 5.80
1619 1758 1.014804 ATGGGAATGTTTAGGGGCCA 58.985 50.000 4.39 0.00 0.00 5.36
1621 1760 0.397114 GGGAATGTTTAGGGGCCAGG 60.397 60.000 4.39 0.00 0.00 4.45
1622 1761 0.335019 GGAATGTTTAGGGGCCAGGT 59.665 55.000 4.39 0.00 0.00 4.00
1623 1762 1.685180 GGAATGTTTAGGGGCCAGGTC 60.685 57.143 4.39 0.00 0.00 3.85
1726 1880 0.690762 ATCCGGGCACTGTACTTTGT 59.309 50.000 0.00 0.00 0.00 2.83
1728 1882 1.274167 TCCGGGCACTGTACTTTGTAG 59.726 52.381 0.00 0.00 0.00 2.74
1729 1883 1.001633 CCGGGCACTGTACTTTGTAGT 59.998 52.381 0.00 0.00 38.44 2.73
1744 1898 1.118838 GTAGTCTGCCAGAGCTCCAT 58.881 55.000 10.93 0.00 40.80 3.41
1750 1904 1.751927 GCCAGAGCTCCATGGTTGG 60.752 63.158 20.00 16.16 45.15 3.77
1793 1948 3.001228 TCGTATTCAATGCGCATGTTCTC 59.999 43.478 26.09 12.01 38.29 2.87
1829 1987 8.898792 GCGGTTTTATACATCCGAAAATAAATC 58.101 33.333 11.66 0.00 44.86 2.17
1952 2110 0.459899 TATCAAGTGACGCTGGCGAT 59.540 50.000 21.77 5.91 42.83 4.58
2139 2298 5.306678 AGAAGACAGAGAGAACCAACTCAAT 59.693 40.000 0.00 0.00 39.14 2.57
2229 2388 1.590665 GCAGAGAGCAGAGCACAGA 59.409 57.895 0.00 0.00 44.79 3.41
2243 2402 1.501169 CACAGAATGCACACACTCGA 58.499 50.000 0.00 0.00 42.53 4.04
2267 2426 7.250032 AGCCATCTATATCATACACACACAT 57.750 36.000 0.00 0.00 0.00 3.21
2287 2446 2.176926 AACGCACACACGCATCACA 61.177 52.632 0.00 0.00 36.19 3.58
2318 2477 5.560724 ACACATACAGAAAAGTAGGCACAT 58.439 37.500 0.00 0.00 29.37 3.21
2486 2645 1.001764 CATGCAAGGCTGGAGGTGA 60.002 57.895 0.00 0.00 0.00 4.02
2536 2695 1.882352 GCTTGATTCGTTCCCAGTGGT 60.882 52.381 8.74 0.00 0.00 4.16
2588 2747 4.096816 TGCTCGGGGATGGGGGTA 62.097 66.667 0.00 0.00 0.00 3.69
2632 2791 1.670083 GCTGGCGAAGTTAACGGGT 60.670 57.895 0.00 0.00 0.00 5.28
2728 2887 0.253894 AACTACCAATACCCACGCCC 59.746 55.000 0.00 0.00 0.00 6.13
2757 2917 6.432403 AGGGGAATTGCTTGTGAAAATAAA 57.568 33.333 0.00 0.00 0.00 1.40
2849 3009 5.551305 AGGAATGGATACGATTGATGACA 57.449 39.130 0.00 0.00 42.51 3.58
2974 3134 5.755409 TCCTAATCTCTGCTACCAAACAA 57.245 39.130 0.00 0.00 0.00 2.83
2995 3155 2.746279 TTCTGCCCAAACAAGGAAGA 57.254 45.000 0.00 0.00 0.00 2.87
3346 3506 9.485591 AAAGACATTACTAAATAATTTGCGTCG 57.514 29.630 0.00 0.00 31.97 5.12
3420 3580 7.227711 TGAAGTGAAAATAAACCGATGAAGTGA 59.772 33.333 0.00 0.00 0.00 3.41
3489 3650 1.366366 ACGAAAGTGGTGGGACGAG 59.634 57.895 0.00 0.00 46.97 4.18
3513 3674 1.313812 ACCCTGGAAGCGAGACTACG 61.314 60.000 0.00 0.00 0.00 3.51
3546 3707 8.826765 TCCATTAGGAGTAGAGAAAAAGAATGT 58.173 33.333 0.00 0.00 39.61 2.71
3550 3711 7.189079 AGGAGTAGAGAAAAAGAATGTAGGG 57.811 40.000 0.00 0.00 0.00 3.53
3551 3712 6.731448 AGGAGTAGAGAAAAAGAATGTAGGGT 59.269 38.462 0.00 0.00 0.00 4.34
3552 3713 7.237887 AGGAGTAGAGAAAAAGAATGTAGGGTT 59.762 37.037 0.00 0.00 0.00 4.11
3553 3714 7.549842 GGAGTAGAGAAAAAGAATGTAGGGTTC 59.450 40.741 0.00 0.00 0.00 3.62
3554 3715 7.395617 AGTAGAGAAAAAGAATGTAGGGTTCC 58.604 38.462 0.00 0.00 0.00 3.62
3555 3716 5.571285 AGAGAAAAAGAATGTAGGGTTCCC 58.429 41.667 0.00 0.00 0.00 3.97
3556 3717 5.074515 AGAGAAAAAGAATGTAGGGTTCCCA 59.925 40.000 10.73 0.00 0.00 4.37
3557 3718 5.903923 AGAAAAAGAATGTAGGGTTCCCAT 58.096 37.500 10.73 0.00 0.00 4.00
3558 3719 6.322931 AGAAAAAGAATGTAGGGTTCCCATT 58.677 36.000 10.73 1.40 0.00 3.16
3559 3720 6.437477 AGAAAAAGAATGTAGGGTTCCCATTC 59.563 38.462 10.73 10.22 42.95 2.67
3560 3721 3.953542 AGAATGTAGGGTTCCCATTCC 57.046 47.619 10.73 0.00 43.41 3.01
3561 3722 3.197983 AGAATGTAGGGTTCCCATTCCA 58.802 45.455 10.73 1.57 43.41 3.53
3562 3723 3.053619 AGAATGTAGGGTTCCCATTCCAC 60.054 47.826 10.73 1.11 43.41 4.02
3563 3724 0.996583 TGTAGGGTTCCCATTCCACC 59.003 55.000 10.73 0.00 0.00 4.61
3564 3725 1.296002 GTAGGGTTCCCATTCCACCT 58.704 55.000 10.73 0.00 0.00 4.00
3565 3726 1.639108 GTAGGGTTCCCATTCCACCTT 59.361 52.381 10.73 0.00 0.00 3.50
3566 3727 1.167033 AGGGTTCCCATTCCACCTTT 58.833 50.000 10.73 0.00 0.00 3.11
3567 3728 2.364190 AGGGTTCCCATTCCACCTTTA 58.636 47.619 10.73 0.00 0.00 1.85
3568 3729 2.933139 AGGGTTCCCATTCCACCTTTAT 59.067 45.455 10.73 0.00 0.00 1.40
3569 3730 3.339742 AGGGTTCCCATTCCACCTTTATT 59.660 43.478 10.73 0.00 0.00 1.40
3570 3731 3.704566 GGGTTCCCATTCCACCTTTATTC 59.295 47.826 2.59 0.00 0.00 1.75
3571 3732 3.380320 GGTTCCCATTCCACCTTTATTCG 59.620 47.826 0.00 0.00 0.00 3.34
3572 3733 2.650322 TCCCATTCCACCTTTATTCGC 58.350 47.619 0.00 0.00 0.00 4.70
3573 3734 2.025793 TCCCATTCCACCTTTATTCGCA 60.026 45.455 0.00 0.00 0.00 5.10
3574 3735 2.099098 CCCATTCCACCTTTATTCGCAC 59.901 50.000 0.00 0.00 0.00 5.34
3575 3736 2.099098 CCATTCCACCTTTATTCGCACC 59.901 50.000 0.00 0.00 0.00 5.01
3576 3737 2.570415 TTCCACCTTTATTCGCACCA 57.430 45.000 0.00 0.00 0.00 4.17
3577 3738 1.816074 TCCACCTTTATTCGCACCAC 58.184 50.000 0.00 0.00 0.00 4.16
3578 3739 1.349688 TCCACCTTTATTCGCACCACT 59.650 47.619 0.00 0.00 0.00 4.00
3579 3740 1.737793 CCACCTTTATTCGCACCACTC 59.262 52.381 0.00 0.00 0.00 3.51
3580 3741 1.737793 CACCTTTATTCGCACCACTCC 59.262 52.381 0.00 0.00 0.00 3.85
3581 3742 1.628846 ACCTTTATTCGCACCACTCCT 59.371 47.619 0.00 0.00 0.00 3.69
3582 3743 2.039879 ACCTTTATTCGCACCACTCCTT 59.960 45.455 0.00 0.00 0.00 3.36
3583 3744 2.678336 CCTTTATTCGCACCACTCCTTC 59.322 50.000 0.00 0.00 0.00 3.46
3584 3745 2.004583 TTATTCGCACCACTCCTTCG 57.995 50.000 0.00 0.00 0.00 3.79
3585 3746 0.892755 TATTCGCACCACTCCTTCGT 59.107 50.000 0.00 0.00 0.00 3.85
3586 3747 0.389948 ATTCGCACCACTCCTTCGTC 60.390 55.000 0.00 0.00 0.00 4.20
3587 3748 2.430382 TTCGCACCACTCCTTCGTCC 62.430 60.000 0.00 0.00 0.00 4.79
3588 3749 2.741092 GCACCACTCCTTCGTCCA 59.259 61.111 0.00 0.00 0.00 4.02
3589 3750 1.070786 GCACCACTCCTTCGTCCAA 59.929 57.895 0.00 0.00 0.00 3.53
3590 3751 1.228657 GCACCACTCCTTCGTCCAAC 61.229 60.000 0.00 0.00 0.00 3.77
3591 3752 0.602905 CACCACTCCTTCGTCCAACC 60.603 60.000 0.00 0.00 0.00 3.77
3592 3753 0.763223 ACCACTCCTTCGTCCAACCT 60.763 55.000 0.00 0.00 0.00 3.50
3593 3754 0.396811 CCACTCCTTCGTCCAACCTT 59.603 55.000 0.00 0.00 0.00 3.50
3594 3755 1.608283 CCACTCCTTCGTCCAACCTTC 60.608 57.143 0.00 0.00 0.00 3.46
3595 3756 0.685660 ACTCCTTCGTCCAACCTTCC 59.314 55.000 0.00 0.00 0.00 3.46
3596 3757 0.977395 CTCCTTCGTCCAACCTTCCT 59.023 55.000 0.00 0.00 0.00 3.36
3597 3758 1.348036 CTCCTTCGTCCAACCTTCCTT 59.652 52.381 0.00 0.00 0.00 3.36
3598 3759 2.565834 CTCCTTCGTCCAACCTTCCTTA 59.434 50.000 0.00 0.00 0.00 2.69
3599 3760 3.178865 TCCTTCGTCCAACCTTCCTTAT 58.821 45.455 0.00 0.00 0.00 1.73
3600 3761 4.355549 TCCTTCGTCCAACCTTCCTTATA 58.644 43.478 0.00 0.00 0.00 0.98
3601 3762 4.966805 TCCTTCGTCCAACCTTCCTTATAT 59.033 41.667 0.00 0.00 0.00 0.86
3602 3763 5.057149 CCTTCGTCCAACCTTCCTTATATG 58.943 45.833 0.00 0.00 0.00 1.78
3603 3764 5.163343 CCTTCGTCCAACCTTCCTTATATGA 60.163 44.000 0.00 0.00 0.00 2.15
3604 3765 6.464465 CCTTCGTCCAACCTTCCTTATATGAT 60.464 42.308 0.00 0.00 0.00 2.45
3605 3766 7.256190 CCTTCGTCCAACCTTCCTTATATGATA 60.256 40.741 0.00 0.00 0.00 2.15
3606 3767 7.606135 TCGTCCAACCTTCCTTATATGATAA 57.394 36.000 0.00 0.00 0.00 1.75
3607 3768 8.202461 TCGTCCAACCTTCCTTATATGATAAT 57.798 34.615 0.00 0.00 0.00 1.28
3608 3769 9.316594 TCGTCCAACCTTCCTTATATGATAATA 57.683 33.333 0.00 0.00 0.00 0.98
3609 3770 9.938280 CGTCCAACCTTCCTTATATGATAATAA 57.062 33.333 0.00 0.00 0.00 1.40
3640 3801 9.636789 ACTTAATTACTTACCTTTTGAACCAGT 57.363 29.630 0.00 0.00 0.00 4.00
3644 3805 7.941431 TTACTTACCTTTTGAACCAGTTTCA 57.059 32.000 0.00 0.00 42.83 2.69
3645 3806 6.203808 ACTTACCTTTTGAACCAGTTTCAC 57.796 37.500 0.00 0.00 44.28 3.18
3646 3807 5.949952 ACTTACCTTTTGAACCAGTTTCACT 59.050 36.000 0.00 0.00 44.28 3.41
3647 3808 6.436218 ACTTACCTTTTGAACCAGTTTCACTT 59.564 34.615 0.00 0.00 44.28 3.16
3648 3809 5.738619 ACCTTTTGAACCAGTTTCACTTT 57.261 34.783 0.00 0.00 44.28 2.66
3649 3810 6.844097 ACCTTTTGAACCAGTTTCACTTTA 57.156 33.333 0.00 0.00 44.28 1.85
3650 3811 7.234661 ACCTTTTGAACCAGTTTCACTTTAA 57.765 32.000 0.00 0.00 44.28 1.52
3651 3812 7.847096 ACCTTTTGAACCAGTTTCACTTTAAT 58.153 30.769 0.00 0.00 44.28 1.40
3652 3813 8.318412 ACCTTTTGAACCAGTTTCACTTTAATT 58.682 29.630 0.00 0.00 44.28 1.40
3653 3814 9.161629 CCTTTTGAACCAGTTTCACTTTAATTT 57.838 29.630 0.00 0.00 44.28 1.82
3661 3822 9.411189 ACCAGTTTCACTTTAATTTACTTACCA 57.589 29.630 0.00 0.00 0.00 3.25
3669 3830 9.389570 CACTTTAATTTACTTACCAAACTTCGG 57.610 33.333 0.00 0.00 0.00 4.30
3670 3831 9.341078 ACTTTAATTTACTTACCAAACTTCGGA 57.659 29.630 0.00 0.00 0.00 4.55
3673 3834 7.989416 AATTTACTTACCAAACTTCGGATCA 57.011 32.000 0.00 0.00 0.00 2.92
3674 3835 7.989416 ATTTACTTACCAAACTTCGGATCAA 57.011 32.000 0.00 0.00 0.00 2.57
3675 3836 7.804843 TTTACTTACCAAACTTCGGATCAAA 57.195 32.000 0.00 0.00 0.00 2.69
3676 3837 7.804843 TTACTTACCAAACTTCGGATCAAAA 57.195 32.000 0.00 0.00 0.00 2.44
3677 3838 6.894339 ACTTACCAAACTTCGGATCAAAAT 57.106 33.333 0.00 0.00 0.00 1.82
3678 3839 6.909909 ACTTACCAAACTTCGGATCAAAATC 58.090 36.000 0.00 0.00 0.00 2.17
3679 3840 6.715264 ACTTACCAAACTTCGGATCAAAATCT 59.285 34.615 0.00 0.00 32.12 2.40
3680 3841 7.881232 ACTTACCAAACTTCGGATCAAAATCTA 59.119 33.333 0.00 0.00 32.12 1.98
3681 3842 8.624367 TTACCAAACTTCGGATCAAAATCTAA 57.376 30.769 0.00 0.00 32.12 2.10
3682 3843 7.145932 ACCAAACTTCGGATCAAAATCTAAG 57.854 36.000 0.00 0.00 34.12 2.18
3683 3844 6.151144 ACCAAACTTCGGATCAAAATCTAAGG 59.849 38.462 0.00 0.00 33.13 2.69
3684 3845 6.151144 CCAAACTTCGGATCAAAATCTAAGGT 59.849 38.462 0.00 0.00 33.13 3.50
3685 3846 7.335924 CCAAACTTCGGATCAAAATCTAAGGTA 59.664 37.037 0.00 0.00 33.13 3.08
3686 3847 8.726988 CAAACTTCGGATCAAAATCTAAGGTAA 58.273 33.333 0.00 0.00 33.13 2.85
3687 3848 9.462606 AAACTTCGGATCAAAATCTAAGGTAAT 57.537 29.630 0.00 0.00 33.13 1.89
3688 3849 9.462606 AACTTCGGATCAAAATCTAAGGTAATT 57.537 29.630 0.00 0.00 33.13 1.40
3689 3850 9.110502 ACTTCGGATCAAAATCTAAGGTAATTC 57.889 33.333 0.00 0.00 33.13 2.17
3690 3851 9.109393 CTTCGGATCAAAATCTAAGGTAATTCA 57.891 33.333 0.00 0.00 32.12 2.57
3691 3852 9.627123 TTCGGATCAAAATCTAAGGTAATTCAT 57.373 29.630 0.00 0.00 32.12 2.57
3692 3853 9.056005 TCGGATCAAAATCTAAGGTAATTCATG 57.944 33.333 0.00 0.00 32.12 3.07
3693 3854 8.292448 CGGATCAAAATCTAAGGTAATTCATGG 58.708 37.037 0.00 0.00 32.12 3.66
3694 3855 8.579863 GGATCAAAATCTAAGGTAATTCATGGG 58.420 37.037 0.00 0.00 32.12 4.00
3695 3856 7.346751 TCAAAATCTAAGGTAATTCATGGGC 57.653 36.000 0.00 0.00 0.00 5.36
3696 3857 6.894654 TCAAAATCTAAGGTAATTCATGGGCA 59.105 34.615 0.00 0.00 0.00 5.36
3697 3858 6.966534 AAATCTAAGGTAATTCATGGGCAG 57.033 37.500 0.00 0.00 0.00 4.85
3698 3859 5.912149 ATCTAAGGTAATTCATGGGCAGA 57.088 39.130 0.00 0.00 0.00 4.26
3699 3860 5.708736 TCTAAGGTAATTCATGGGCAGAA 57.291 39.130 0.00 0.00 0.00 3.02
3700 3861 6.266131 TCTAAGGTAATTCATGGGCAGAAT 57.734 37.500 0.00 0.00 37.30 2.40
3701 3862 6.672593 TCTAAGGTAATTCATGGGCAGAATT 58.327 36.000 13.67 13.67 45.05 2.17
3702 3863 7.125391 TCTAAGGTAATTCATGGGCAGAATTT 58.875 34.615 14.17 3.21 41.54 1.82
3703 3864 5.603170 AGGTAATTCATGGGCAGAATTTG 57.397 39.130 14.17 0.00 41.54 2.32
3704 3865 5.271598 AGGTAATTCATGGGCAGAATTTGA 58.728 37.500 14.17 0.00 41.54 2.69
3705 3866 5.901276 AGGTAATTCATGGGCAGAATTTGAT 59.099 36.000 14.17 2.50 41.54 2.57
3706 3867 5.987347 GGTAATTCATGGGCAGAATTTGATG 59.013 40.000 14.17 0.00 41.54 3.07
3707 3868 5.943349 AATTCATGGGCAGAATTTGATGA 57.057 34.783 6.13 0.00 41.54 2.92
3708 3869 6.494666 AATTCATGGGCAGAATTTGATGAT 57.505 33.333 6.13 0.00 41.54 2.45
3709 3870 5.524971 TTCATGGGCAGAATTTGATGATC 57.475 39.130 0.00 0.00 0.00 2.92
3710 3871 3.566742 TCATGGGCAGAATTTGATGATCG 59.433 43.478 0.00 0.00 0.00 3.69
3711 3872 3.003394 TGGGCAGAATTTGATGATCGT 57.997 42.857 0.00 0.00 0.00 3.73
3712 3873 3.355378 TGGGCAGAATTTGATGATCGTT 58.645 40.909 0.00 0.00 0.00 3.85
3713 3874 3.763360 TGGGCAGAATTTGATGATCGTTT 59.237 39.130 0.00 0.00 0.00 3.60
3714 3875 4.946772 TGGGCAGAATTTGATGATCGTTTA 59.053 37.500 0.00 0.00 0.00 2.01
3715 3876 5.593909 TGGGCAGAATTTGATGATCGTTTAT 59.406 36.000 0.00 0.00 0.00 1.40
3716 3877 6.096705 TGGGCAGAATTTGATGATCGTTTATT 59.903 34.615 0.00 0.00 0.00 1.40
3717 3878 6.980397 GGGCAGAATTTGATGATCGTTTATTT 59.020 34.615 0.00 0.00 0.00 1.40
3718 3879 8.134895 GGGCAGAATTTGATGATCGTTTATTTA 58.865 33.333 0.00 0.00 0.00 1.40
3719 3880 8.958043 GGCAGAATTTGATGATCGTTTATTTAC 58.042 33.333 0.00 0.00 0.00 2.01
3720 3881 9.502145 GCAGAATTTGATGATCGTTTATTTACA 57.498 29.630 0.00 0.00 0.00 2.41
3727 3888 8.613613 TGATGATCGTTTATTTACACAATTGC 57.386 30.769 5.05 0.00 0.00 3.56
3728 3889 8.239998 TGATGATCGTTTATTTACACAATTGCA 58.760 29.630 5.05 0.00 0.00 4.08
3729 3890 9.236691 GATGATCGTTTATTTACACAATTGCAT 57.763 29.630 5.05 0.00 0.00 3.96
3730 3891 8.978564 TGATCGTTTATTTACACAATTGCATT 57.021 26.923 5.05 0.00 0.00 3.56
3757 3918 9.826574 ATTATAGACAAGTAAATTACAAGCCGA 57.173 29.630 5.89 0.00 0.00 5.54
3758 3919 5.857822 AGACAAGTAAATTACAAGCCGAC 57.142 39.130 5.89 0.00 0.00 4.79
3759 3920 4.387862 AGACAAGTAAATTACAAGCCGACG 59.612 41.667 5.89 0.00 0.00 5.12
3760 3921 4.060205 ACAAGTAAATTACAAGCCGACGT 58.940 39.130 5.89 0.00 0.00 4.34
3761 3922 5.229423 ACAAGTAAATTACAAGCCGACGTA 58.771 37.500 5.89 0.00 0.00 3.57
3762 3923 5.119125 ACAAGTAAATTACAAGCCGACGTAC 59.881 40.000 5.89 0.00 0.00 3.67
3763 3924 5.064441 AGTAAATTACAAGCCGACGTACT 57.936 39.130 5.89 0.00 0.00 2.73
3764 3925 6.194796 AGTAAATTACAAGCCGACGTACTA 57.805 37.500 5.89 0.00 0.00 1.82
3765 3926 6.261118 AGTAAATTACAAGCCGACGTACTAG 58.739 40.000 5.89 0.00 0.00 2.57
3766 3927 4.970662 AATTACAAGCCGACGTACTAGA 57.029 40.909 0.00 0.00 0.00 2.43
3767 3928 4.970662 ATTACAAGCCGACGTACTAGAA 57.029 40.909 0.00 0.00 0.00 2.10
3768 3929 2.915738 ACAAGCCGACGTACTAGAAG 57.084 50.000 0.00 0.00 0.00 2.85
3769 3930 2.430465 ACAAGCCGACGTACTAGAAGA 58.570 47.619 0.00 0.00 0.00 2.87
3770 3931 3.015327 ACAAGCCGACGTACTAGAAGAT 58.985 45.455 0.00 0.00 0.00 2.40
3771 3932 3.442977 ACAAGCCGACGTACTAGAAGATT 59.557 43.478 0.00 0.00 0.00 2.40
3772 3933 4.082354 ACAAGCCGACGTACTAGAAGATTT 60.082 41.667 0.00 0.00 0.00 2.17
3773 3934 5.124457 ACAAGCCGACGTACTAGAAGATTTA 59.876 40.000 0.00 0.00 0.00 1.40
3774 3935 6.183360 ACAAGCCGACGTACTAGAAGATTTAT 60.183 38.462 0.00 0.00 0.00 1.40
3775 3936 7.012704 ACAAGCCGACGTACTAGAAGATTTATA 59.987 37.037 0.00 0.00 0.00 0.98
3776 3937 6.896969 AGCCGACGTACTAGAAGATTTATAC 58.103 40.000 0.00 0.00 0.00 1.47
3777 3938 6.072783 AGCCGACGTACTAGAAGATTTATACC 60.073 42.308 0.00 0.00 0.00 2.73
3778 3939 6.606768 CCGACGTACTAGAAGATTTATACCC 58.393 44.000 0.00 0.00 0.00 3.69
3779 3940 6.348868 CCGACGTACTAGAAGATTTATACCCC 60.349 46.154 0.00 0.00 0.00 4.95
3780 3941 6.566197 ACGTACTAGAAGATTTATACCCCG 57.434 41.667 0.00 0.00 0.00 5.73
3781 3942 6.064717 ACGTACTAGAAGATTTATACCCCGT 58.935 40.000 0.00 0.00 0.00 5.28
3782 3943 6.547510 ACGTACTAGAAGATTTATACCCCGTT 59.452 38.462 0.00 0.00 0.00 4.44
3783 3944 6.860023 CGTACTAGAAGATTTATACCCCGTTG 59.140 42.308 0.00 0.00 0.00 4.10
3784 3945 5.608449 ACTAGAAGATTTATACCCCGTTGC 58.392 41.667 0.00 0.00 0.00 4.17
3785 3946 4.497291 AGAAGATTTATACCCCGTTGCA 57.503 40.909 0.00 0.00 0.00 4.08
3786 3947 4.850680 AGAAGATTTATACCCCGTTGCAA 58.149 39.130 0.00 0.00 0.00 4.08
3787 3948 4.638865 AGAAGATTTATACCCCGTTGCAAC 59.361 41.667 19.89 19.89 0.00 4.17
3797 3958 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
3798 3959 3.600694 TTGCAACGCACGGGCATT 61.601 55.556 11.77 0.00 38.71 3.56
3799 3960 3.837908 TTGCAACGCACGGGCATTG 62.838 57.895 15.24 15.24 45.48 2.82
3800 3961 4.341502 GCAACGCACGGGCATTGT 62.342 61.111 20.63 0.74 44.58 2.71
3801 3962 2.334653 CAACGCACGGGCATTGTT 59.665 55.556 10.90 2.50 38.34 2.83
3802 3963 1.729131 CAACGCACGGGCATTGTTC 60.729 57.895 10.90 0.00 38.34 3.18
3803 3964 1.896660 AACGCACGGGCATTGTTCT 60.897 52.632 11.77 0.00 41.24 3.01
3804 3965 0.604243 AACGCACGGGCATTGTTCTA 60.604 50.000 11.77 0.00 41.24 2.10
3805 3966 1.019278 ACGCACGGGCATTGTTCTAG 61.019 55.000 11.77 0.00 41.24 2.43
3806 3967 1.019278 CGCACGGGCATTGTTCTAGT 61.019 55.000 11.77 0.00 41.24 2.57
3807 3968 1.737696 CGCACGGGCATTGTTCTAGTA 60.738 52.381 11.77 0.00 41.24 1.82
3808 3969 2.352388 GCACGGGCATTGTTCTAGTAA 58.648 47.619 3.77 0.00 40.72 2.24
3809 3970 2.745281 GCACGGGCATTGTTCTAGTAAA 59.255 45.455 3.77 0.00 40.72 2.01
3810 3971 3.377172 GCACGGGCATTGTTCTAGTAAAT 59.623 43.478 3.77 0.00 40.72 1.40
3811 3972 4.573201 GCACGGGCATTGTTCTAGTAAATA 59.427 41.667 3.77 0.00 40.72 1.40
3812 3973 5.065474 GCACGGGCATTGTTCTAGTAAATAA 59.935 40.000 3.77 0.00 40.72 1.40
3813 3974 6.403855 GCACGGGCATTGTTCTAGTAAATAAA 60.404 38.462 3.77 0.00 40.72 1.40
3814 3975 7.681065 GCACGGGCATTGTTCTAGTAAATAAAT 60.681 37.037 3.77 0.00 40.72 1.40
3815 3976 8.832521 CACGGGCATTGTTCTAGTAAATAAATA 58.167 33.333 0.00 0.00 0.00 1.40
3897 4072 1.393883 CCGAAGTCGCCTAAGAAAAGC 59.606 52.381 0.00 0.00 38.18 3.51
3917 4092 0.317479 AAAGTCCGACCGAGGTCAAG 59.683 55.000 20.75 11.99 44.77 3.02
3943 4118 2.113860 TGCTCATCTAAAAAGGCGCT 57.886 45.000 7.64 0.00 0.00 5.92
4047 4225 5.761165 TTTGTACCAGAAAAACTGCCTAC 57.239 39.130 0.00 0.00 44.52 3.18
4055 4233 4.272504 CAGAAAAACTGCCTACTTTGACGA 59.727 41.667 0.00 0.00 39.86 4.20
4056 4234 4.272748 AGAAAAACTGCCTACTTTGACGAC 59.727 41.667 0.00 0.00 0.00 4.34
4057 4235 2.165319 AACTGCCTACTTTGACGACC 57.835 50.000 0.00 0.00 0.00 4.79
4058 4236 0.320697 ACTGCCTACTTTGACGACCC 59.679 55.000 0.00 0.00 0.00 4.46
4156 4338 1.548719 GTTGGTGGGCTGGGTTTATTC 59.451 52.381 0.00 0.00 0.00 1.75
4159 4341 0.817654 GTGGGCTGGGTTTATTCTGC 59.182 55.000 0.00 0.00 0.00 4.26
4238 4424 2.354072 CGCTCGCTCGGATTCTCC 60.354 66.667 0.00 0.00 0.00 3.71
4242 4428 0.248825 CTCGCTCGGATTCTCCACTG 60.249 60.000 0.00 0.00 35.91 3.66
4275 4461 1.446792 AGCGTGGAAGTGCTCATCG 60.447 57.895 0.00 0.00 36.53 3.84
4288 4474 2.565391 TGCTCATCGGACAAGACCTTTA 59.435 45.455 0.00 0.00 0.00 1.85
4290 4476 4.000988 GCTCATCGGACAAGACCTTTAAA 58.999 43.478 0.00 0.00 0.00 1.52
4436 4631 0.518636 GCGCAGAACACACATGATGT 59.481 50.000 0.30 0.00 44.81 3.06
4514 4709 9.074576 TGAATGGAATGATCAGGAATTTATGAG 57.925 33.333 0.09 0.00 0.00 2.90
4601 4796 1.450312 CCTTGGACGGTCTCATGGC 60.450 63.158 8.23 0.00 0.00 4.40
4623 4818 0.257039 AGATGGACACCATTCTGGCC 59.743 55.000 0.00 0.00 45.26 5.36
4649 4844 1.554617 TGATCGGCTTGACATGGAAGA 59.445 47.619 10.16 0.00 0.00 2.87
4686 4885 1.587088 GGCCATGGTACGTACGTCG 60.587 63.158 26.53 9.26 46.00 5.12
4854 5053 1.375326 GTCCCTGTGTTGTCCCCTC 59.625 63.158 0.00 0.00 0.00 4.30
4984 5189 3.884895 TCTGAATTTCTGGTGTGTGTGT 58.115 40.909 3.79 0.00 0.00 3.72
4985 5190 3.627123 TCTGAATTTCTGGTGTGTGTGTG 59.373 43.478 3.79 0.00 0.00 3.82
4986 5191 3.351740 TGAATTTCTGGTGTGTGTGTGT 58.648 40.909 0.00 0.00 0.00 3.72
4987 5192 3.128415 TGAATTTCTGGTGTGTGTGTGTG 59.872 43.478 0.00 0.00 0.00 3.82
4988 5193 2.192664 TTTCTGGTGTGTGTGTGTGT 57.807 45.000 0.00 0.00 0.00 3.72
4989 5194 1.447945 TTCTGGTGTGTGTGTGTGTG 58.552 50.000 0.00 0.00 0.00 3.82
4990 5195 0.323302 TCTGGTGTGTGTGTGTGTGT 59.677 50.000 0.00 0.00 0.00 3.72
4991 5196 0.447406 CTGGTGTGTGTGTGTGTGTG 59.553 55.000 0.00 0.00 0.00 3.82
4992 5197 0.250510 TGGTGTGTGTGTGTGTGTGT 60.251 50.000 0.00 0.00 0.00 3.72
4993 5198 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
5045 5250 2.300152 AGCTCAAGTCGTCAAGAATCCA 59.700 45.455 0.00 0.00 0.00 3.41
5046 5251 2.670414 GCTCAAGTCGTCAAGAATCCAG 59.330 50.000 0.00 0.00 0.00 3.86
5184 5389 2.831742 CAGTACGCCCCTCGCCTA 60.832 66.667 0.00 0.00 43.23 3.93
5187 5392 2.362760 TACGCCCCTCGCCTAACA 60.363 61.111 0.00 0.00 43.23 2.41
5190 5395 2.797278 CGCCCCTCGCCTAACAGAT 61.797 63.158 0.00 0.00 0.00 2.90
5200 5405 0.596083 CCTAACAGATGCCTCTCGCG 60.596 60.000 0.00 0.00 42.08 5.87
5472 5677 3.383620 CAGAAGAGCTCGCTGGATTAT 57.616 47.619 23.78 2.72 0.00 1.28
5484 5689 1.945394 CTGGATTATCACCAGCTGTGC 59.055 52.381 13.81 0.00 46.30 4.57
5511 5716 1.038130 CGGTGGAGAGGGAGTACAGG 61.038 65.000 0.00 0.00 0.00 4.00
5598 5803 5.593095 AGAGGTAAACCAAAAGAACAGGAAC 59.407 40.000 1.26 0.00 38.89 3.62
5602 5807 4.718940 AACCAAAAGAACAGGAACACAG 57.281 40.909 0.00 0.00 0.00 3.66
5657 5862 2.890945 GGTGAGTAACAATTGGCACCTT 59.109 45.455 20.02 6.50 41.82 3.50
5672 5877 3.536158 CACCTTGTGTGTTAACCATCG 57.464 47.619 2.48 0.00 40.26 3.84
5838 6043 1.274728 GGCATATGCATCGAGAGGACT 59.725 52.381 28.07 0.00 44.36 3.85
5860 6065 0.601046 CAGCGAGCACCTCAACTTCA 60.601 55.000 0.00 0.00 0.00 3.02
6011 6216 1.853250 GCAAGCCCTCCTTACCCTGT 61.853 60.000 0.00 0.00 31.00 4.00
6044 6249 0.098200 TCGTACCACGATCGAGCAAG 59.902 55.000 24.34 8.39 46.73 4.01
6096 6301 6.483640 AGTGAGAAGTGACAAGGTTCATTAAC 59.516 38.462 0.00 0.00 34.66 2.01
6130 6335 2.379634 CGTGCAGAACCGCGAATCA 61.380 57.895 8.23 0.00 40.91 2.57
6181 6386 2.588877 CCGGCCCTGATAGCGTTG 60.589 66.667 0.00 0.00 0.00 4.10
6402 6607 1.082117 GGCGTAGTGGAATGACGGTG 61.082 60.000 0.00 0.00 37.08 4.94
6404 6609 1.625616 CGTAGTGGAATGACGGTGAC 58.374 55.000 0.00 0.00 33.01 3.67
6419 6624 1.608283 GGTGACGGAACAGGAAGAAGG 60.608 57.143 0.00 0.00 0.00 3.46
6441 6646 4.086457 GTTCAAGCTGGAAAAGGGGATAA 58.914 43.478 4.73 0.00 0.00 1.75
6442 6647 4.396357 TCAAGCTGGAAAAGGGGATAAA 57.604 40.909 0.00 0.00 0.00 1.40
6443 6648 4.746466 TCAAGCTGGAAAAGGGGATAAAA 58.254 39.130 0.00 0.00 0.00 1.52
6579 6784 4.022242 TGCCACTGAGTAGAAACTACTCAC 60.022 45.833 27.05 20.40 46.16 3.51
6632 6841 8.785468 TTTGTTATTAGTTACAAAACGGAAGC 57.215 30.769 0.68 0.00 40.26 3.86
6689 6898 5.395682 TTTCTTTGGCTCCAATGATGAAG 57.604 39.130 15.22 4.32 39.00 3.02
6766 8545 2.550180 GAGAAACTTTTCTTGGCTCGCT 59.450 45.455 5.71 0.00 46.84 4.93
6767 8546 2.291741 AGAAACTTTTCTTGGCTCGCTG 59.708 45.455 0.00 0.00 44.70 5.18
6768 8547 0.312102 AACTTTTCTTGGCTCGCTGC 59.688 50.000 0.00 0.00 41.94 5.25
6769 8548 0.819259 ACTTTTCTTGGCTCGCTGCA 60.819 50.000 0.00 0.00 45.15 4.41
6770 8549 0.311790 CTTTTCTTGGCTCGCTGCAA 59.688 50.000 0.00 0.00 45.15 4.08
6771 8550 0.743688 TTTTCTTGGCTCGCTGCAAA 59.256 45.000 0.00 0.00 45.15 3.68
6772 8551 0.030638 TTTCTTGGCTCGCTGCAAAC 59.969 50.000 0.00 0.00 45.15 2.93
6773 8552 2.116736 TTCTTGGCTCGCTGCAAACG 62.117 55.000 0.00 2.48 45.15 3.60
6817 8596 4.440663 GCAATGAGGCTCAATTTTAGACCC 60.441 45.833 22.84 0.00 0.00 4.46
6823 8602 3.448660 GGCTCAATTTTAGACCCATTGCT 59.551 43.478 0.00 0.00 0.00 3.91
6825 8604 4.440663 GCTCAATTTTAGACCCATTGCTCC 60.441 45.833 0.00 0.00 0.00 4.70
6826 8605 4.934356 TCAATTTTAGACCCATTGCTCCT 58.066 39.130 0.00 0.00 0.00 3.69
6850 8629 5.413833 TGTTAACGTGGTTTTCAAACTGGTA 59.586 36.000 0.26 0.00 38.89 3.25
6851 8630 4.625972 AACGTGGTTTTCAAACTGGTAG 57.374 40.909 2.55 0.00 38.89 3.18
6877 8656 3.010420 AGTTTTCGCCTTAAGAGCATCC 58.990 45.455 3.36 0.00 33.66 3.51
6878 8657 1.651987 TTTCGCCTTAAGAGCATCCG 58.348 50.000 3.36 0.00 33.66 4.18
6897 8676 1.735198 CTGCCGCAACCTGCAAATG 60.735 57.895 0.00 0.00 45.36 2.32
6915 8694 6.892456 TGCAAATGTGACCCCTAAAATGTATA 59.108 34.615 0.00 0.00 0.00 1.47
6921 8700 4.101430 TGACCCCTAAAATGTATACGGACC 59.899 45.833 0.00 0.00 0.00 4.46
6922 8701 4.301205 ACCCCTAAAATGTATACGGACCT 58.699 43.478 0.00 0.00 0.00 3.85
6923 8702 4.102054 ACCCCTAAAATGTATACGGACCTG 59.898 45.833 0.00 0.00 0.00 4.00
6939 8718 1.069765 CTGCCCGCGGATAGTGAAT 59.930 57.895 30.73 0.00 0.00 2.57
6971 8751 5.107143 CCTCAAATTTTACCATTTGCAACCG 60.107 40.000 0.00 0.00 41.92 4.44
7044 8824 1.880271 TTTGGATGTTGCGGACGTTA 58.120 45.000 0.00 0.00 0.00 3.18
7108 8888 7.828717 TGCTCATACTAAGATTTTTCACATCCA 59.171 33.333 0.00 0.00 0.00 3.41
7121 8901 2.034066 ATCCATATTGGGCCGGCG 59.966 61.111 22.54 3.99 38.32 6.46
7136 8916 0.168128 CGGCGGGTTTCAGATGTTTC 59.832 55.000 0.00 0.00 0.00 2.78
7225 9014 8.461222 CAGTAATCAATGCATCCTTTGTTAAGA 58.539 33.333 0.00 0.00 32.92 2.10
7254 9043 9.607333 ATGGACTATCACTATTAATCTTCTCCA 57.393 33.333 0.00 0.00 0.00 3.86
7380 9171 5.234752 CAAGGGTGTAGGCCAAAATAAAAC 58.765 41.667 5.01 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.620819 ACTTCATGACAGGCTTCGAGT 59.379 47.619 0.00 0.00 0.00 4.18
8 9 2.688507 TCGAACTTCATGACAGGCTTC 58.311 47.619 0.00 0.00 0.00 3.86
14 15 4.021104 AGGAGTGATTCGAACTTCATGACA 60.021 41.667 0.00 0.00 0.00 3.58
56 57 0.663568 CGGAAAGTGTCGTTCGAGCT 60.664 55.000 0.00 0.00 0.00 4.09
73 74 1.226974 CTGCACGTGGAGATACCGG 60.227 63.158 30.88 6.37 42.61 5.28
75 76 1.521681 GCCTGCACGTGGAGATACC 60.522 63.158 35.18 17.50 35.31 2.73
104 105 2.554564 GGTTTCAGGAGGATTTTCGGGT 60.555 50.000 0.00 0.00 0.00 5.28
114 115 3.754965 TCTTGTTCATGGTTTCAGGAGG 58.245 45.455 0.00 0.00 35.01 4.30
124 125 6.588719 TTTCCAGGTTTATCTTGTTCATGG 57.411 37.500 0.00 0.00 0.00 3.66
131 132 7.651027 ATCCTCATTTTCCAGGTTTATCTTG 57.349 36.000 0.00 0.00 0.00 3.02
139 140 2.094675 CGCAATCCTCATTTTCCAGGT 58.905 47.619 0.00 0.00 0.00 4.00
142 143 2.164219 GCTTCGCAATCCTCATTTTCCA 59.836 45.455 0.00 0.00 0.00 3.53
144 145 2.480244 GGGCTTCGCAATCCTCATTTTC 60.480 50.000 0.00 0.00 0.00 2.29
147 148 1.097547 CGGGCTTCGCAATCCTCATT 61.098 55.000 0.00 0.00 0.00 2.57
148 149 1.524621 CGGGCTTCGCAATCCTCAT 60.525 57.895 0.00 0.00 0.00 2.90
149 150 2.125147 CGGGCTTCGCAATCCTCA 60.125 61.111 0.00 0.00 0.00 3.86
150 151 2.174319 GTCGGGCTTCGCAATCCTC 61.174 63.158 0.00 0.00 39.05 3.71
152 153 3.202706 GGTCGGGCTTCGCAATCC 61.203 66.667 0.00 0.00 39.05 3.01
153 154 3.202706 GGGTCGGGCTTCGCAATC 61.203 66.667 0.00 0.00 39.05 2.67
201 230 2.005960 GACTCGTGCGATAGGCCTGT 62.006 60.000 17.99 9.34 42.61 4.00
203 232 0.179026 TAGACTCGTGCGATAGGCCT 60.179 55.000 11.78 11.78 42.61 5.19
204 233 0.238817 CTAGACTCGTGCGATAGGCC 59.761 60.000 0.00 0.00 42.61 5.19
206 235 0.238817 GCCTAGACTCGTGCGATAGG 59.761 60.000 12.74 12.74 36.81 2.57
223 253 0.727398 CGAGATTTTCACCGGAAGCC 59.273 55.000 9.46 0.00 33.82 4.35
227 257 4.368315 CATATCACGAGATTTTCACCGGA 58.632 43.478 9.46 0.00 35.67 5.14
230 260 5.163764 TGTTGCATATCACGAGATTTTCACC 60.164 40.000 0.00 0.00 35.67 4.02
232 262 5.643348 AGTGTTGCATATCACGAGATTTTCA 59.357 36.000 0.00 0.00 39.25 2.69
263 293 4.628766 CCACGTAGATTATGATCATGCCAG 59.371 45.833 18.72 5.76 34.60 4.85
293 323 6.987404 ACACGGGCACAAAGTAAAAATAAAAT 59.013 30.769 0.00 0.00 0.00 1.82
294 324 6.338937 ACACGGGCACAAAGTAAAAATAAAA 58.661 32.000 0.00 0.00 0.00 1.52
361 392 1.391933 ATCTGTCATCCTGCGCGGTA 61.392 55.000 16.49 0.00 0.00 4.02
366 397 1.953138 GCCGATCTGTCATCCTGCG 60.953 63.158 0.00 0.00 0.00 5.18
375 406 2.237143 TGGAATCTCTTTGCCGATCTGT 59.763 45.455 0.00 0.00 0.00 3.41
385 419 5.815233 TCTCACTCTTGTGGAATCTCTTT 57.185 39.130 0.00 0.00 43.94 2.52
404 438 1.552337 TCTCCATGTGACTGGCTTCTC 59.448 52.381 0.00 0.00 36.16 2.87
434 468 1.872234 AGCACACGTACTATGCGCG 60.872 57.895 0.00 0.00 44.25 6.86
435 469 0.800683 TCAGCACACGTACTATGCGC 60.801 55.000 0.00 0.00 44.25 6.09
438 472 2.923655 CTGGTTCAGCACACGTACTATG 59.076 50.000 0.00 0.00 0.00 2.23
453 487 1.807142 GCTTTGTCTGGCTACTGGTTC 59.193 52.381 0.00 0.00 0.00 3.62
488 522 2.348591 GCATGCCGCTCGTTAGATTTAC 60.349 50.000 6.36 0.00 37.77 2.01
599 633 2.815647 GTAGACTGGCTGTGGCGC 60.816 66.667 0.00 0.00 39.81 6.53
600 634 1.005037 TTGTAGACTGGCTGTGGCG 60.005 57.895 0.29 0.00 39.81 5.69
653 687 4.008933 ACCGACAGTGGCTGAGGC 62.009 66.667 0.00 0.00 36.74 4.70
654 688 2.047844 CACCGACAGTGGCTGAGG 60.048 66.667 2.91 8.16 43.26 3.86
677 711 2.464459 GCGACCTGAAATGCGAGGG 61.464 63.158 0.00 0.00 33.16 4.30
755 814 2.094659 GCTCCGTCCGATGTGTGTG 61.095 63.158 0.00 0.00 0.00 3.82
796 870 0.972883 AGGCAGTGAGACTTGAGACC 59.027 55.000 0.00 0.00 20.59 3.85
797 871 1.402194 CGAGGCAGTGAGACTTGAGAC 60.402 57.143 0.00 0.00 39.37 3.36
802 876 0.885196 GAGACGAGGCAGTGAGACTT 59.115 55.000 0.00 0.00 33.72 3.01
803 877 0.250945 TGAGACGAGGCAGTGAGACT 60.251 55.000 0.00 0.00 39.48 3.24
805 879 0.250945 AGTGAGACGAGGCAGTGAGA 60.251 55.000 0.00 0.00 0.00 3.27
806 880 0.170116 GAGTGAGACGAGGCAGTGAG 59.830 60.000 0.00 0.00 0.00 3.51
807 881 0.250945 AGAGTGAGACGAGGCAGTGA 60.251 55.000 0.00 0.00 0.00 3.41
811 885 0.036875 TGAGAGAGTGAGACGAGGCA 59.963 55.000 0.00 0.00 0.00 4.75
812 886 0.450184 GTGAGAGAGTGAGACGAGGC 59.550 60.000 0.00 0.00 0.00 4.70
813 887 1.737236 CAGTGAGAGAGTGAGACGAGG 59.263 57.143 0.00 0.00 0.00 4.63
828 928 2.972713 GGGGAGTTATAGGCATCAGTGA 59.027 50.000 0.00 0.00 0.00 3.41
830 930 1.971357 CGGGGAGTTATAGGCATCAGT 59.029 52.381 0.00 0.00 0.00 3.41
905 1007 3.520402 CTCCAGCTCGAGGAGTCC 58.480 66.667 15.58 0.00 46.07 3.85
933 1053 1.542472 TCATGAACGAACGAGGCTACA 59.458 47.619 0.00 0.00 0.00 2.74
984 1104 3.683802 CCTCATTGCTCAGAGTCCTTTT 58.316 45.455 0.00 0.00 0.00 2.27
985 1105 2.617532 GCCTCATTGCTCAGAGTCCTTT 60.618 50.000 0.00 0.00 0.00 3.11
986 1106 1.065564 GCCTCATTGCTCAGAGTCCTT 60.066 52.381 0.00 0.00 0.00 3.36
988 1108 0.540923 AGCCTCATTGCTCAGAGTCC 59.459 55.000 0.00 0.00 36.75 3.85
989 1109 1.066286 ACAGCCTCATTGCTCAGAGTC 60.066 52.381 0.00 0.00 40.32 3.36
990 1110 0.982704 ACAGCCTCATTGCTCAGAGT 59.017 50.000 0.00 0.00 40.32 3.24
991 1111 2.093816 TGTACAGCCTCATTGCTCAGAG 60.094 50.000 0.00 0.00 40.32 3.35
992 1112 1.901833 TGTACAGCCTCATTGCTCAGA 59.098 47.619 0.00 0.00 40.32 3.27
993 1113 2.391616 TGTACAGCCTCATTGCTCAG 57.608 50.000 0.00 0.00 40.32 3.35
1192 1318 3.491652 GGGCTGCGAACGAGCTTC 61.492 66.667 14.23 0.00 36.63 3.86
1244 1370 1.409661 GGGAGCAATTAACCGGTGGAT 60.410 52.381 8.52 1.71 0.00 3.41
1246 1372 1.035385 GGGGAGCAATTAACCGGTGG 61.035 60.000 8.52 0.00 0.00 4.61
1391 1523 0.606604 ACACGGGCCTAACACACTAG 59.393 55.000 0.84 0.00 0.00 2.57
1484 1616 4.992381 AAAGATGTCAAAGCTCACGTAC 57.008 40.909 0.00 0.00 0.00 3.67
1518 1653 4.652131 ACCCATTTCCGCCACGCA 62.652 61.111 0.00 0.00 0.00 5.24
1601 1740 0.334676 CTGGCCCCTAAACATTCCCA 59.665 55.000 0.00 0.00 0.00 4.37
1626 1765 4.354212 CAGCGACGTGTTGCCGTG 62.354 66.667 8.59 0.00 41.98 4.94
1645 1784 4.988716 TGGAGGCCACGGTCGAGT 62.989 66.667 5.01 0.00 0.00 4.18
1726 1880 1.117994 CATGGAGCTCTGGCAGACTA 58.882 55.000 14.43 2.28 41.70 2.59
1728 1882 1.153208 CCATGGAGCTCTGGCAGAC 60.153 63.158 14.43 10.81 41.70 3.51
1729 1883 1.203441 AACCATGGAGCTCTGGCAGA 61.203 55.000 21.47 17.68 41.70 4.26
1829 1987 6.922407 GGGCGTTCTTTTAATAGGTAGTAGAG 59.078 42.308 0.00 0.00 0.00 2.43
1830 1988 6.460123 CGGGCGTTCTTTTAATAGGTAGTAGA 60.460 42.308 0.00 0.00 0.00 2.59
1831 1989 5.689068 CGGGCGTTCTTTTAATAGGTAGTAG 59.311 44.000 0.00 0.00 0.00 2.57
1833 1991 4.081476 ACGGGCGTTCTTTTAATAGGTAGT 60.081 41.667 0.00 0.00 0.00 2.73
1834 1992 4.269363 CACGGGCGTTCTTTTAATAGGTAG 59.731 45.833 0.00 0.00 0.00 3.18
1835 1993 4.183101 CACGGGCGTTCTTTTAATAGGTA 58.817 43.478 0.00 0.00 0.00 3.08
1836 1994 3.004862 CACGGGCGTTCTTTTAATAGGT 58.995 45.455 0.00 0.00 0.00 3.08
1837 1995 2.223180 GCACGGGCGTTCTTTTAATAGG 60.223 50.000 0.00 0.00 0.00 2.57
1838 1996 3.047613 GCACGGGCGTTCTTTTAATAG 57.952 47.619 0.00 0.00 0.00 1.73
2229 2388 0.321919 ATGGCTCGAGTGTGTGCATT 60.322 50.000 15.13 0.00 0.00 3.56
2243 2402 6.670695 TGTGTGTGTATGATATAGATGGCT 57.329 37.500 0.00 0.00 0.00 4.75
2267 2426 1.884926 TGATGCGTGTGTGCGTTGA 60.885 52.632 0.00 0.00 37.81 3.18
2287 2446 5.560724 ACTTTTCTGTATGTGTATGCCAGT 58.439 37.500 0.00 0.00 0.00 4.00
2632 2791 2.034999 AATTTCCAGCCGCCCGAA 59.965 55.556 0.00 0.00 0.00 4.30
2687 2846 2.822701 GCCCGCTAGGTTTTCCGG 60.823 66.667 0.00 0.00 46.35 5.14
2728 2887 5.467035 TCACAAGCAATTCCCCTAAAAAG 57.533 39.130 0.00 0.00 0.00 2.27
2757 2917 1.154263 GCTAAGTCGTCGTCGCACT 60.154 57.895 0.00 0.00 36.96 4.40
2798 2958 5.801531 TTTAAGGGAATCTGCTCGCTATA 57.198 39.130 0.00 0.00 37.61 1.31
2849 3009 7.417797 GGCCAACATTCACCACTATTTATCAAT 60.418 37.037 0.00 0.00 0.00 2.57
2974 3134 3.575805 TCTTCCTTGTTTGGGCAGAAAT 58.424 40.909 0.00 0.00 0.00 2.17
2995 3155 4.571919 TCCGAATCACGTCCATAACTTTT 58.428 39.130 0.00 0.00 40.78 2.27
3102 3262 6.954944 TCCATACTGACGCAAATTATTTAGC 58.045 36.000 0.00 0.00 0.00 3.09
3346 3506 4.138487 ACGGATCAGAACTTTCCATACC 57.862 45.455 0.00 0.00 0.00 2.73
3393 3553 7.535258 CACTTCATCGGTTTATTTTCACTTCAG 59.465 37.037 0.00 0.00 0.00 3.02
3489 3650 1.535896 GTCTCGCTTCCAGGGTTTTTC 59.464 52.381 0.00 0.00 0.00 2.29
3550 3711 3.181490 GCGAATAAAGGTGGAATGGGAAC 60.181 47.826 0.00 0.00 0.00 3.62
3551 3712 3.020984 GCGAATAAAGGTGGAATGGGAA 58.979 45.455 0.00 0.00 0.00 3.97
3552 3713 2.025793 TGCGAATAAAGGTGGAATGGGA 60.026 45.455 0.00 0.00 0.00 4.37
3553 3714 2.099098 GTGCGAATAAAGGTGGAATGGG 59.901 50.000 0.00 0.00 0.00 4.00
3554 3715 2.099098 GGTGCGAATAAAGGTGGAATGG 59.901 50.000 0.00 0.00 0.00 3.16
3555 3716 2.752354 TGGTGCGAATAAAGGTGGAATG 59.248 45.455 0.00 0.00 0.00 2.67
3556 3717 2.752903 GTGGTGCGAATAAAGGTGGAAT 59.247 45.455 0.00 0.00 0.00 3.01
3557 3718 2.156098 GTGGTGCGAATAAAGGTGGAA 58.844 47.619 0.00 0.00 0.00 3.53
3558 3719 1.349688 AGTGGTGCGAATAAAGGTGGA 59.650 47.619 0.00 0.00 0.00 4.02
3559 3720 1.737793 GAGTGGTGCGAATAAAGGTGG 59.262 52.381 0.00 0.00 0.00 4.61
3560 3721 1.737793 GGAGTGGTGCGAATAAAGGTG 59.262 52.381 0.00 0.00 0.00 4.00
3561 3722 1.628846 AGGAGTGGTGCGAATAAAGGT 59.371 47.619 0.00 0.00 0.00 3.50
3562 3723 2.403252 AGGAGTGGTGCGAATAAAGG 57.597 50.000 0.00 0.00 0.00 3.11
3563 3724 2.348666 CGAAGGAGTGGTGCGAATAAAG 59.651 50.000 0.00 0.00 0.00 1.85
3564 3725 2.289195 ACGAAGGAGTGGTGCGAATAAA 60.289 45.455 0.00 0.00 0.00 1.40
3565 3726 1.274167 ACGAAGGAGTGGTGCGAATAA 59.726 47.619 0.00 0.00 0.00 1.40
3566 3727 0.892755 ACGAAGGAGTGGTGCGAATA 59.107 50.000 0.00 0.00 0.00 1.75
3567 3728 0.389948 GACGAAGGAGTGGTGCGAAT 60.390 55.000 0.00 0.00 0.00 3.34
3568 3729 1.006571 GACGAAGGAGTGGTGCGAA 60.007 57.895 0.00 0.00 0.00 4.70
3569 3730 2.649034 GACGAAGGAGTGGTGCGA 59.351 61.111 0.00 0.00 0.00 5.10
3570 3731 2.432628 GGACGAAGGAGTGGTGCG 60.433 66.667 0.00 0.00 0.00 5.34
3571 3732 1.070786 TTGGACGAAGGAGTGGTGC 59.929 57.895 0.00 0.00 0.00 5.01
3572 3733 0.602905 GGTTGGACGAAGGAGTGGTG 60.603 60.000 0.00 0.00 0.00 4.17
3573 3734 0.763223 AGGTTGGACGAAGGAGTGGT 60.763 55.000 0.00 0.00 0.00 4.16
3574 3735 0.396811 AAGGTTGGACGAAGGAGTGG 59.603 55.000 0.00 0.00 0.00 4.00
3575 3736 1.608283 GGAAGGTTGGACGAAGGAGTG 60.608 57.143 0.00 0.00 0.00 3.51
3576 3737 0.685660 GGAAGGTTGGACGAAGGAGT 59.314 55.000 0.00 0.00 0.00 3.85
3577 3738 0.977395 AGGAAGGTTGGACGAAGGAG 59.023 55.000 0.00 0.00 0.00 3.69
3578 3739 1.430992 AAGGAAGGTTGGACGAAGGA 58.569 50.000 0.00 0.00 0.00 3.36
3579 3740 3.629142 ATAAGGAAGGTTGGACGAAGG 57.371 47.619 0.00 0.00 0.00 3.46
3580 3741 5.914033 TCATATAAGGAAGGTTGGACGAAG 58.086 41.667 0.00 0.00 0.00 3.79
3581 3742 5.943349 TCATATAAGGAAGGTTGGACGAA 57.057 39.130 0.00 0.00 0.00 3.85
3582 3743 7.606135 TTATCATATAAGGAAGGTTGGACGA 57.394 36.000 0.00 0.00 0.00 4.20
3583 3744 9.938280 TTATTATCATATAAGGAAGGTTGGACG 57.062 33.333 0.00 0.00 0.00 4.79
3614 3775 9.636789 ACTGGTTCAAAAGGTAAGTAATTAAGT 57.363 29.630 0.00 0.00 0.00 2.24
3618 3779 8.973182 TGAAACTGGTTCAAAAGGTAAGTAATT 58.027 29.630 5.50 0.00 43.43 1.40
3619 3780 8.528044 TGAAACTGGTTCAAAAGGTAAGTAAT 57.472 30.769 5.50 0.00 43.43 1.89
3620 3781 7.941431 TGAAACTGGTTCAAAAGGTAAGTAA 57.059 32.000 5.50 0.00 43.43 2.24
3643 3804 9.389570 CCGAAGTTTGGTAAGTAAATTAAAGTG 57.610 33.333 0.29 0.00 0.00 3.16
3644 3805 9.341078 TCCGAAGTTTGGTAAGTAAATTAAAGT 57.659 29.630 9.09 0.00 0.00 2.66
3647 3808 9.504708 TGATCCGAAGTTTGGTAAGTAAATTAA 57.495 29.630 9.09 0.00 0.00 1.40
3648 3809 9.504708 TTGATCCGAAGTTTGGTAAGTAAATTA 57.495 29.630 9.09 0.00 0.00 1.40
3649 3810 7.989416 TGATCCGAAGTTTGGTAAGTAAATT 57.011 32.000 9.09 0.00 0.00 1.82
3650 3811 7.989416 TTGATCCGAAGTTTGGTAAGTAAAT 57.011 32.000 9.09 0.00 0.00 1.40
3651 3812 7.804843 TTTGATCCGAAGTTTGGTAAGTAAA 57.195 32.000 9.09 3.24 0.00 2.01
3652 3813 7.804843 TTTTGATCCGAAGTTTGGTAAGTAA 57.195 32.000 9.09 0.00 0.00 2.24
3653 3814 7.881232 AGATTTTGATCCGAAGTTTGGTAAGTA 59.119 33.333 9.09 0.00 0.00 2.24
3654 3815 6.715264 AGATTTTGATCCGAAGTTTGGTAAGT 59.285 34.615 9.09 0.00 0.00 2.24
3655 3816 7.145932 AGATTTTGATCCGAAGTTTGGTAAG 57.854 36.000 9.09 0.00 0.00 2.34
3656 3817 8.624367 TTAGATTTTGATCCGAAGTTTGGTAA 57.376 30.769 9.09 1.34 0.00 2.85
3657 3818 7.335924 CCTTAGATTTTGATCCGAAGTTTGGTA 59.664 37.037 9.09 0.00 0.00 3.25
3658 3819 6.151144 CCTTAGATTTTGATCCGAAGTTTGGT 59.849 38.462 9.09 0.00 0.00 3.67
3659 3820 6.151144 ACCTTAGATTTTGATCCGAAGTTTGG 59.849 38.462 2.25 2.25 0.00 3.28
3660 3821 7.145932 ACCTTAGATTTTGATCCGAAGTTTG 57.854 36.000 0.00 0.00 0.00 2.93
3661 3822 8.857694 TTACCTTAGATTTTGATCCGAAGTTT 57.142 30.769 0.00 0.00 0.00 2.66
3662 3823 9.462606 AATTACCTTAGATTTTGATCCGAAGTT 57.537 29.630 0.00 0.00 0.00 2.66
3663 3824 9.110502 GAATTACCTTAGATTTTGATCCGAAGT 57.889 33.333 0.00 0.00 0.00 3.01
3664 3825 9.109393 TGAATTACCTTAGATTTTGATCCGAAG 57.891 33.333 0.00 0.00 0.00 3.79
3665 3826 9.627123 ATGAATTACCTTAGATTTTGATCCGAA 57.373 29.630 0.00 0.00 0.00 4.30
3666 3827 9.056005 CATGAATTACCTTAGATTTTGATCCGA 57.944 33.333 0.00 0.00 0.00 4.55
3667 3828 8.292448 CCATGAATTACCTTAGATTTTGATCCG 58.708 37.037 0.00 0.00 0.00 4.18
3668 3829 8.579863 CCCATGAATTACCTTAGATTTTGATCC 58.420 37.037 0.00 0.00 0.00 3.36
3669 3830 8.084684 GCCCATGAATTACCTTAGATTTTGATC 58.915 37.037 0.00 0.00 0.00 2.92
3670 3831 7.564660 TGCCCATGAATTACCTTAGATTTTGAT 59.435 33.333 0.00 0.00 0.00 2.57
3671 3832 6.894654 TGCCCATGAATTACCTTAGATTTTGA 59.105 34.615 0.00 0.00 0.00 2.69
3672 3833 7.068593 TCTGCCCATGAATTACCTTAGATTTTG 59.931 37.037 0.00 0.00 0.00 2.44
3673 3834 7.125391 TCTGCCCATGAATTACCTTAGATTTT 58.875 34.615 0.00 0.00 0.00 1.82
3674 3835 6.672593 TCTGCCCATGAATTACCTTAGATTT 58.327 36.000 0.00 0.00 0.00 2.17
3675 3836 6.266131 TCTGCCCATGAATTACCTTAGATT 57.734 37.500 0.00 0.00 0.00 2.40
3676 3837 5.912149 TCTGCCCATGAATTACCTTAGAT 57.088 39.130 0.00 0.00 0.00 1.98
3677 3838 5.708736 TTCTGCCCATGAATTACCTTAGA 57.291 39.130 0.00 0.00 0.00 2.10
3678 3839 6.966534 AATTCTGCCCATGAATTACCTTAG 57.033 37.500 0.00 0.00 40.88 2.18
3679 3840 6.894654 TCAAATTCTGCCCATGAATTACCTTA 59.105 34.615 0.00 0.00 41.54 2.69
3680 3841 5.721000 TCAAATTCTGCCCATGAATTACCTT 59.279 36.000 0.00 0.00 41.54 3.50
3681 3842 5.271598 TCAAATTCTGCCCATGAATTACCT 58.728 37.500 0.00 0.00 41.54 3.08
3682 3843 5.596836 TCAAATTCTGCCCATGAATTACC 57.403 39.130 0.00 0.00 41.54 2.85
3683 3844 6.808829 TCATCAAATTCTGCCCATGAATTAC 58.191 36.000 0.00 0.00 41.54 1.89
3684 3845 7.522562 CGATCATCAAATTCTGCCCATGAATTA 60.523 37.037 0.00 0.00 41.54 1.40
3685 3846 5.943349 TCATCAAATTCTGCCCATGAATT 57.057 34.783 0.00 0.00 43.44 2.17
3686 3847 5.278808 CGATCATCAAATTCTGCCCATGAAT 60.279 40.000 0.00 0.00 35.88 2.57
3687 3848 4.037089 CGATCATCAAATTCTGCCCATGAA 59.963 41.667 0.00 0.00 0.00 2.57
3688 3849 3.566742 CGATCATCAAATTCTGCCCATGA 59.433 43.478 0.00 0.00 0.00 3.07
3689 3850 3.317149 ACGATCATCAAATTCTGCCCATG 59.683 43.478 0.00 0.00 0.00 3.66
3690 3851 3.559069 ACGATCATCAAATTCTGCCCAT 58.441 40.909 0.00 0.00 0.00 4.00
3691 3852 3.003394 ACGATCATCAAATTCTGCCCA 57.997 42.857 0.00 0.00 0.00 5.36
3692 3853 4.376340 AAACGATCATCAAATTCTGCCC 57.624 40.909 0.00 0.00 0.00 5.36
3693 3854 7.992180 AAATAAACGATCATCAAATTCTGCC 57.008 32.000 0.00 0.00 0.00 4.85
3694 3855 9.502145 TGTAAATAAACGATCATCAAATTCTGC 57.498 29.630 0.00 0.00 0.00 4.26
3701 3862 9.071221 GCAATTGTGTAAATAAACGATCATCAA 57.929 29.630 7.40 0.00 0.00 2.57
3702 3863 8.239998 TGCAATTGTGTAAATAAACGATCATCA 58.760 29.630 7.40 0.00 0.00 3.07
3703 3864 8.613613 TGCAATTGTGTAAATAAACGATCATC 57.386 30.769 7.40 0.00 0.00 2.92
3704 3865 9.585099 AATGCAATTGTGTAAATAAACGATCAT 57.415 25.926 7.40 0.00 33.44 2.45
3705 3866 8.978564 AATGCAATTGTGTAAATAAACGATCA 57.021 26.923 7.40 0.00 33.44 2.92
3731 3892 9.826574 TCGGCTTGTAATTTACTTGTCTATAAT 57.173 29.630 7.99 0.00 0.00 1.28
3732 3893 9.090692 GTCGGCTTGTAATTTACTTGTCTATAA 57.909 33.333 7.99 0.00 0.00 0.98
3733 3894 7.433131 CGTCGGCTTGTAATTTACTTGTCTATA 59.567 37.037 7.99 0.00 0.00 1.31
3734 3895 6.255020 CGTCGGCTTGTAATTTACTTGTCTAT 59.745 38.462 7.99 0.00 0.00 1.98
3735 3896 5.574055 CGTCGGCTTGTAATTTACTTGTCTA 59.426 40.000 7.99 0.00 0.00 2.59
3736 3897 4.387862 CGTCGGCTTGTAATTTACTTGTCT 59.612 41.667 7.99 0.00 0.00 3.41
3737 3898 4.151157 ACGTCGGCTTGTAATTTACTTGTC 59.849 41.667 7.99 2.04 0.00 3.18
3738 3899 4.060205 ACGTCGGCTTGTAATTTACTTGT 58.940 39.130 7.99 0.00 0.00 3.16
3739 3900 4.657075 ACGTCGGCTTGTAATTTACTTG 57.343 40.909 7.99 2.49 0.00 3.16
3740 3901 5.473039 AGTACGTCGGCTTGTAATTTACTT 58.527 37.500 7.99 0.00 0.00 2.24
3741 3902 5.064441 AGTACGTCGGCTTGTAATTTACT 57.936 39.130 7.99 0.00 0.00 2.24
3742 3903 6.258160 TCTAGTACGTCGGCTTGTAATTTAC 58.742 40.000 0.00 0.00 0.00 2.01
3743 3904 6.435430 TCTAGTACGTCGGCTTGTAATTTA 57.565 37.500 0.00 0.00 0.00 1.40
3744 3905 5.314923 TCTAGTACGTCGGCTTGTAATTT 57.685 39.130 0.00 0.00 0.00 1.82
3745 3906 4.970662 TCTAGTACGTCGGCTTGTAATT 57.029 40.909 0.00 0.00 0.00 1.40
3746 3907 4.637534 TCTTCTAGTACGTCGGCTTGTAAT 59.362 41.667 0.00 0.00 0.00 1.89
3747 3908 4.002982 TCTTCTAGTACGTCGGCTTGTAA 58.997 43.478 0.00 0.00 0.00 2.41
3748 3909 3.599343 TCTTCTAGTACGTCGGCTTGTA 58.401 45.455 0.00 0.00 0.00 2.41
3749 3910 2.430465 TCTTCTAGTACGTCGGCTTGT 58.570 47.619 0.00 0.00 0.00 3.16
3750 3911 3.694535 ATCTTCTAGTACGTCGGCTTG 57.305 47.619 0.00 0.00 0.00 4.01
3751 3912 4.715527 AAATCTTCTAGTACGTCGGCTT 57.284 40.909 0.00 0.00 0.00 4.35
3752 3913 6.072783 GGTATAAATCTTCTAGTACGTCGGCT 60.073 42.308 0.00 0.00 0.00 5.52
3753 3914 6.082984 GGTATAAATCTTCTAGTACGTCGGC 58.917 44.000 0.00 0.00 0.00 5.54
3754 3915 6.348868 GGGGTATAAATCTTCTAGTACGTCGG 60.349 46.154 0.00 0.00 0.00 4.79
3755 3916 6.606768 GGGGTATAAATCTTCTAGTACGTCG 58.393 44.000 0.00 0.00 0.00 5.12
3756 3917 6.205658 ACGGGGTATAAATCTTCTAGTACGTC 59.794 42.308 0.00 0.00 0.00 4.34
3757 3918 6.064717 ACGGGGTATAAATCTTCTAGTACGT 58.935 40.000 0.00 0.00 0.00 3.57
3758 3919 6.566197 ACGGGGTATAAATCTTCTAGTACG 57.434 41.667 0.00 0.00 0.00 3.67
3759 3920 6.644181 GCAACGGGGTATAAATCTTCTAGTAC 59.356 42.308 0.00 0.00 0.00 2.73
3760 3921 6.324512 TGCAACGGGGTATAAATCTTCTAGTA 59.675 38.462 0.00 0.00 0.00 1.82
3761 3922 5.129815 TGCAACGGGGTATAAATCTTCTAGT 59.870 40.000 0.00 0.00 0.00 2.57
3762 3923 5.607477 TGCAACGGGGTATAAATCTTCTAG 58.393 41.667 0.00 0.00 0.00 2.43
3763 3924 5.617528 TGCAACGGGGTATAAATCTTCTA 57.382 39.130 0.00 0.00 0.00 2.10
3764 3925 4.497291 TGCAACGGGGTATAAATCTTCT 57.503 40.909 0.00 0.00 0.00 2.85
3765 3926 4.916870 GTTGCAACGGGGTATAAATCTTC 58.083 43.478 14.90 0.00 0.00 2.87
3766 3927 4.976224 GTTGCAACGGGGTATAAATCTT 57.024 40.909 14.90 0.00 0.00 2.40
3780 3941 3.839642 AATGCCCGTGCGTTGCAAC 62.840 57.895 19.89 19.89 44.90 4.17
3781 3942 3.600694 AATGCCCGTGCGTTGCAA 61.601 55.556 0.00 0.00 44.90 4.08
3786 3947 1.004320 TAGAACAATGCCCGTGCGT 60.004 52.632 0.00 0.00 41.78 5.24
3787 3948 1.019278 ACTAGAACAATGCCCGTGCG 61.019 55.000 0.00 0.00 41.78 5.34
3788 3949 2.018542 TACTAGAACAATGCCCGTGC 57.981 50.000 0.00 0.00 38.26 5.34
3789 3950 6.671614 TTATTTACTAGAACAATGCCCGTG 57.328 37.500 0.00 0.00 0.00 4.94
3790 3951 7.875327 ATTTATTTACTAGAACAATGCCCGT 57.125 32.000 0.00 0.00 0.00 5.28
3891 4066 1.194772 CTCGGTCGGACTTTGCTTTTC 59.805 52.381 8.23 0.00 0.00 2.29
3897 4072 4.573162 GACCTCGGTCGGACTTTG 57.427 61.111 8.23 0.00 35.30 2.77
3950 4125 1.782028 AAGAACACAAGCCGCGAACC 61.782 55.000 8.23 0.00 0.00 3.62
4047 4225 0.037232 GTCCTCCTGGGTCGTCAAAG 60.037 60.000 0.00 0.00 36.25 2.77
4055 4233 1.192803 GGAGTTTCGTCCTCCTGGGT 61.193 60.000 9.53 0.00 44.29 4.51
4056 4234 1.597461 GGAGTTTCGTCCTCCTGGG 59.403 63.158 9.53 0.00 44.29 4.45
4057 4235 1.215647 CGGAGTTTCGTCCTCCTGG 59.784 63.158 13.26 0.00 45.29 4.45
4058 4236 1.446272 GCGGAGTTTCGTCCTCCTG 60.446 63.158 13.26 9.25 45.29 3.86
4074 4253 3.223953 CGTACGAATCTACCACTATGCG 58.776 50.000 10.44 0.00 0.00 4.73
4170 4352 6.376864 TCACAAGGGTTTTGTATGTATCCATG 59.623 38.462 0.00 0.00 32.29 3.66
4178 4360 6.391227 AGAAAGTCACAAGGGTTTTGTATG 57.609 37.500 0.00 0.00 0.00 2.39
4238 4424 2.345760 GGATTGCAGGCCACCAGTG 61.346 63.158 5.01 0.00 0.00 3.66
4242 4428 3.455469 GCTGGATTGCAGGCCACC 61.455 66.667 5.01 0.00 0.00 4.61
4266 4452 0.247736 AGGTCTTGTCCGATGAGCAC 59.752 55.000 0.00 0.00 0.00 4.40
4275 4461 5.126545 ACACAAAGGTTTAAAGGTCTTGTCC 59.873 40.000 0.00 0.00 0.00 4.02
4288 4474 6.319405 ACGTATAGTTCCAAACACAAAGGTTT 59.681 34.615 0.00 0.00 41.44 3.27
4290 4476 5.237779 CACGTATAGTTCCAAACACAAAGGT 59.762 40.000 0.00 0.00 0.00 3.50
4347 4533 1.164041 GGACCACAACTCCACAACCG 61.164 60.000 0.00 0.00 0.00 4.44
4468 4663 8.995220 CCATTCATCAAAATTGACAGTCATTTT 58.005 29.630 14.93 14.93 40.49 1.82
4514 4709 2.378445 GTGGCTTCTCTTCCACTCTC 57.622 55.000 4.31 0.00 46.90 3.20
4592 4787 0.249657 GTCCATCTCCGCCATGAGAC 60.250 60.000 0.00 0.00 43.80 3.36
4601 4796 1.945387 CAGAATGGTGTCCATCTCCG 58.055 55.000 1.60 0.00 44.40 4.63
4623 4818 3.324117 CATGTCAAGCCGATCATAGGAG 58.676 50.000 0.00 0.00 0.00 3.69
4686 4885 7.702348 AGAAAGTGTCAAAGTGCTTGTAAATTC 59.298 33.333 0.00 0.00 36.34 2.17
4984 5189 2.098934 GCTGGTTCAAATCACACACACA 59.901 45.455 0.00 0.00 0.00 3.72
4985 5190 2.358898 AGCTGGTTCAAATCACACACAC 59.641 45.455 0.00 0.00 0.00 3.82
4986 5191 2.358582 CAGCTGGTTCAAATCACACACA 59.641 45.455 5.57 0.00 0.00 3.72
4987 5192 2.859806 GCAGCTGGTTCAAATCACACAC 60.860 50.000 17.12 0.00 0.00 3.82
4988 5193 1.337703 GCAGCTGGTTCAAATCACACA 59.662 47.619 17.12 0.00 0.00 3.72
4989 5194 1.610522 AGCAGCTGGTTCAAATCACAC 59.389 47.619 13.85 0.00 0.00 3.82
4990 5195 1.985473 AGCAGCTGGTTCAAATCACA 58.015 45.000 13.85 0.00 0.00 3.58
4991 5196 4.216257 TCTTTAGCAGCTGGTTCAAATCAC 59.784 41.667 25.47 0.00 0.00 3.06
4992 5197 4.397420 TCTTTAGCAGCTGGTTCAAATCA 58.603 39.130 25.47 0.06 0.00 2.57
4993 5198 5.338365 CATCTTTAGCAGCTGGTTCAAATC 58.662 41.667 25.47 0.00 0.00 2.17
5045 5250 0.249911 GTGCCGGTTGAACAGAGTCT 60.250 55.000 1.90 0.00 0.00 3.24
5046 5251 1.228657 GGTGCCGGTTGAACAGAGTC 61.229 60.000 1.90 0.00 0.00 3.36
5184 5389 1.153745 GACGCGAGAGGCATCTGTT 60.154 57.895 15.93 0.00 43.84 3.16
5187 5392 2.755876 TGGACGCGAGAGGCATCT 60.756 61.111 15.93 0.00 43.84 2.90
5200 5405 2.126424 GACGAGGCAGACGTGGAC 60.126 66.667 0.00 0.00 43.97 4.02
5532 5737 1.710013 TGAGGATCGAAAACGTGCTC 58.290 50.000 0.00 0.00 38.61 4.26
5657 5862 1.600013 GCACACGATGGTTAACACACA 59.400 47.619 8.10 0.00 0.00 3.72
5665 5870 1.873591 GAAGAACTGCACACGATGGTT 59.126 47.619 0.00 0.00 0.00 3.67
5672 5877 0.951040 CTCCGGGAAGAACTGCACAC 60.951 60.000 0.00 0.00 0.00 3.82
5725 5930 2.401766 CCAGATCCTTGCGCACCAC 61.402 63.158 11.12 0.00 0.00 4.16
5838 6043 1.181741 AGTTGAGGTGCTCGCTGAGA 61.182 55.000 9.32 0.00 32.35 3.27
6011 6216 4.616604 CGTGGTACGAAAATGGTGAGAGTA 60.617 45.833 0.00 0.00 46.05 2.59
6044 6249 2.260481 GTCGGTACTGCTAAGAGTTGC 58.740 52.381 0.00 0.00 0.00 4.17
6096 6301 1.594293 ACGCACCCGACACAAGAAG 60.594 57.895 0.00 0.00 38.29 2.85
6130 6335 0.768221 TCTTCCACAGCCTGAACCCT 60.768 55.000 0.00 0.00 0.00 4.34
6402 6607 2.224209 TGAACCTTCTTCCTGTTCCGTC 60.224 50.000 0.00 0.00 38.04 4.79
6404 6609 2.543777 TGAACCTTCTTCCTGTTCCG 57.456 50.000 0.00 0.00 38.04 4.30
6413 6618 3.638627 CCTTTTCCAGCTTGAACCTTCTT 59.361 43.478 0.00 0.00 0.00 2.52
6419 6624 1.995376 TCCCCTTTTCCAGCTTGAAC 58.005 50.000 0.00 0.00 0.00 3.18
6441 6646 1.346395 TGCACCGGATCACTGTACTTT 59.654 47.619 9.46 0.00 0.00 2.66
6442 6647 0.973632 TGCACCGGATCACTGTACTT 59.026 50.000 9.46 0.00 0.00 2.24
6443 6648 0.973632 TTGCACCGGATCACTGTACT 59.026 50.000 9.46 0.00 0.00 2.73
6542 6747 3.505680 TCAGTGGCATTAAACGAGCAAAT 59.494 39.130 0.00 0.00 0.00 2.32
6549 6754 5.408604 AGTTTCTACTCAGTGGCATTAAACG 59.591 40.000 0.00 0.00 31.41 3.60
6631 6840 3.375782 ACAACTTCTGCAATTTCCAGC 57.624 42.857 0.00 0.00 0.00 4.85
6632 6841 4.479619 GCTACAACTTCTGCAATTTCCAG 58.520 43.478 0.00 0.00 0.00 3.86
6780 8559 5.188359 AGCCTCATTGCAATAAAATGAACCT 59.812 36.000 12.53 2.88 42.04 3.50
6817 8596 2.151202 ACCACGTTAACAGGAGCAATG 58.849 47.619 18.16 0.00 0.00 2.82
6823 8602 4.701171 AGTTTGAAAACCACGTTAACAGGA 59.299 37.500 18.16 0.00 39.71 3.86
6825 8604 4.796312 CCAGTTTGAAAACCACGTTAACAG 59.204 41.667 6.39 1.29 39.71 3.16
6826 8605 4.217983 ACCAGTTTGAAAACCACGTTAACA 59.782 37.500 6.39 0.00 39.71 2.41
6850 8629 5.529800 TGCTCTTAAGGCGAAAACTTTAACT 59.470 36.000 1.85 0.00 0.00 2.24
6851 8630 5.754778 TGCTCTTAAGGCGAAAACTTTAAC 58.245 37.500 1.85 0.00 0.00 2.01
6897 8676 5.052481 GTCCGTATACATTTTAGGGGTCAC 58.948 45.833 3.32 0.00 0.00 3.67
6921 8700 1.069765 ATTCACTATCCGCGGGCAG 59.930 57.895 27.83 23.69 0.00 4.85
6922 8701 1.227527 CATTCACTATCCGCGGGCA 60.228 57.895 27.83 12.62 0.00 5.36
6923 8702 1.961277 CCATTCACTATCCGCGGGC 60.961 63.158 27.83 0.00 0.00 6.13
6932 8711 0.616395 TGAGGCCCGTCCATTCACTA 60.616 55.000 0.00 0.00 37.29 2.74
6939 8718 2.164338 GTAAAATTTGAGGCCCGTCCA 58.836 47.619 0.00 0.00 37.29 4.02
6971 8751 6.232139 AGCTGTTTTGAAAATATGCTTTGC 57.768 33.333 8.43 0.00 0.00 3.68
7016 8796 3.243168 CCGCAACATCCAAAATGATCGAT 60.243 43.478 0.00 0.00 0.00 3.59
7099 8879 1.478471 CCGGCCCAATATGGATGTGAA 60.478 52.381 0.00 0.00 40.96 3.18
7108 8888 3.367907 AAACCCGCCGGCCCAATAT 62.368 57.895 23.46 0.00 0.00 1.28
7121 8901 2.820197 GGGACAGAAACATCTGAAACCC 59.180 50.000 12.46 15.31 39.99 4.11
7260 9049 7.923344 CGATGAGTATTAATCTTCTCTGTGGTT 59.077 37.037 12.90 0.00 0.00 3.67
7261 9050 7.068839 ACGATGAGTATTAATCTTCTCTGTGGT 59.931 37.037 12.90 8.46 0.00 4.16
7262 9051 7.429633 ACGATGAGTATTAATCTTCTCTGTGG 58.570 38.462 12.90 8.07 0.00 4.17
7285 9074 3.119602 TCCGTTTGTGAAGGAGATAGACG 60.120 47.826 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.