Multiple sequence alignment - TraesCS3A01G283500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G283500 chr3A 100.000 2777 0 0 1 2777 511998042 511995266 0.000000e+00 5129.0
1 TraesCS3A01G283500 chr3A 91.667 144 9 3 556 697 375743486 375743344 2.180000e-46 196.0
2 TraesCS3A01G283500 chr3D 93.402 1849 91 6 929 2777 391637977 391636160 0.000000e+00 2710.0
3 TraesCS3A01G283500 chr3D 82.657 542 52 15 196 697 599205068 599205607 2.540000e-120 442.0
4 TraesCS3A01G283500 chr3D 80.556 108 20 1 591 697 610942986 610942879 6.370000e-12 82.4
5 TraesCS3A01G283500 chr3B 95.599 1227 42 7 1552 2777 508757108 508755893 0.000000e+00 1956.0
6 TraesCS3A01G283500 chr3B 96.239 585 22 0 929 1513 508759213 508758629 0.000000e+00 959.0
7 TraesCS3A01G283500 chr3B 94.615 130 6 1 569 697 168115063 168114934 1.690000e-47 200.0
8 TraesCS3A01G283500 chr3B 83.660 153 24 1 209 361 660334016 660334167 2.880000e-30 143.0
9 TraesCS3A01G283500 chr7B 90.972 144 10 3 556 697 679173389 679173247 1.020000e-44 191.0
10 TraesCS3A01G283500 chr7B 80.952 105 19 1 594 697 339028940 339028836 6.370000e-12 82.4
11 TraesCS3A01G283500 chr2B 91.176 136 10 2 563 697 637928664 637928798 1.700000e-42 183.0
12 TraesCS3A01G283500 chr5A 88.732 142 16 0 705 846 577746185 577746044 1.020000e-39 174.0
13 TraesCS3A01G283500 chr5A 90.323 93 7 2 844 936 283311043 283311133 1.350000e-23 121.0
14 TraesCS3A01G283500 chr1D 84.810 158 20 3 693 848 92099944 92099789 3.700000e-34 156.0
15 TraesCS3A01G283500 chr6B 78.661 239 42 8 137 371 295781520 295781753 1.720000e-32 150.0
16 TraesCS3A01G283500 chr2A 95.349 86 4 0 846 931 88745100 88745015 1.340000e-28 137.0
17 TraesCS3A01G283500 chr2A 95.349 86 4 0 846 931 344447649 344447734 1.340000e-28 137.0
18 TraesCS3A01G283500 chr1A 90.196 102 10 0 693 794 463352402 463352301 1.740000e-27 134.0
19 TraesCS3A01G283500 chr2D 94.937 79 4 0 854 932 183630871 183630949 1.040000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G283500 chr3A 511995266 511998042 2776 True 5129.0 5129 100.000 1 2777 1 chr3A.!!$R2 2776
1 TraesCS3A01G283500 chr3D 391636160 391637977 1817 True 2710.0 2710 93.402 929 2777 1 chr3D.!!$R1 1848
2 TraesCS3A01G283500 chr3D 599205068 599205607 539 False 442.0 442 82.657 196 697 1 chr3D.!!$F1 501
3 TraesCS3A01G283500 chr3B 508755893 508759213 3320 True 1457.5 1956 95.919 929 2777 2 chr3B.!!$R2 1848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.107897 CGAATGGGACCCACGATGAA 60.108 55.0 17.78 0.0 35.8 2.57 F
707 747 0.110373 GCAAACTAAGGCCGTGTTCG 60.110 55.0 0.00 0.0 0.0 3.95 F
845 885 0.246635 GAGCTGCCGAACAAGACCTA 59.753 55.0 0.00 0.0 0.0 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1248 1288 0.030101 CGCGAGAGGAGAGAATGGAC 59.970 60.0 0.0 0.0 0.00 4.02 R
1623 3176 0.034756 TCACATCCAACACCACCTCG 59.965 55.0 0.0 0.0 0.00 4.63 R
1966 3519 0.111061 TCAACAGCCAGCAGGTCATT 59.889 50.0 0.0 0.0 37.19 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.851976 TTTTGCCACACGTTACTTTGT 57.148 38.095 0.00 0.00 0.00 2.83
32 33 4.959596 TTTTGCCACACGTTACTTTGTA 57.040 36.364 0.00 0.00 0.00 2.41
33 34 3.948196 TTGCCACACGTTACTTTGTAC 57.052 42.857 0.00 0.00 0.00 2.90
34 35 3.182341 TGCCACACGTTACTTTGTACT 57.818 42.857 0.00 0.00 0.00 2.73
35 36 3.533547 TGCCACACGTTACTTTGTACTT 58.466 40.909 0.00 0.00 0.00 2.24
36 37 3.940221 TGCCACACGTTACTTTGTACTTT 59.060 39.130 0.00 0.00 0.00 2.66
37 38 4.201832 TGCCACACGTTACTTTGTACTTTG 60.202 41.667 0.00 0.00 0.00 2.77
38 39 4.034279 GCCACACGTTACTTTGTACTTTGA 59.966 41.667 0.00 0.00 0.00 2.69
39 40 5.277634 GCCACACGTTACTTTGTACTTTGAT 60.278 40.000 0.00 0.00 0.00 2.57
40 41 6.073657 GCCACACGTTACTTTGTACTTTGATA 60.074 38.462 0.00 0.00 0.00 2.15
41 42 7.360607 GCCACACGTTACTTTGTACTTTGATAT 60.361 37.037 0.00 0.00 0.00 1.63
42 43 8.500773 CCACACGTTACTTTGTACTTTGATATT 58.499 33.333 0.00 0.00 0.00 1.28
43 44 9.872757 CACACGTTACTTTGTACTTTGATATTT 57.127 29.630 0.00 0.00 0.00 1.40
46 47 9.389570 ACGTTACTTTGTACTTTGATATTTTGC 57.610 29.630 0.00 0.00 0.00 3.68
47 48 8.846607 CGTTACTTTGTACTTTGATATTTTGCC 58.153 33.333 0.00 0.00 0.00 4.52
48 49 9.135843 GTTACTTTGTACTTTGATATTTTGCCC 57.864 33.333 0.00 0.00 0.00 5.36
49 50 6.697395 ACTTTGTACTTTGATATTTTGCCCC 58.303 36.000 0.00 0.00 0.00 5.80
50 51 6.496911 ACTTTGTACTTTGATATTTTGCCCCT 59.503 34.615 0.00 0.00 0.00 4.79
51 52 5.913137 TGTACTTTGATATTTTGCCCCTG 57.087 39.130 0.00 0.00 0.00 4.45
52 53 5.329399 TGTACTTTGATATTTTGCCCCTGT 58.671 37.500 0.00 0.00 0.00 4.00
53 54 5.417580 TGTACTTTGATATTTTGCCCCTGTC 59.582 40.000 0.00 0.00 0.00 3.51
54 55 3.443681 ACTTTGATATTTTGCCCCTGTCG 59.556 43.478 0.00 0.00 0.00 4.35
55 56 3.358111 TTGATATTTTGCCCCTGTCGA 57.642 42.857 0.00 0.00 0.00 4.20
56 57 3.358111 TGATATTTTGCCCCTGTCGAA 57.642 42.857 0.00 0.00 0.00 3.71
57 58 3.897239 TGATATTTTGCCCCTGTCGAAT 58.103 40.909 0.00 0.00 0.00 3.34
58 59 3.631686 TGATATTTTGCCCCTGTCGAATG 59.368 43.478 0.00 0.00 0.00 2.67
59 60 1.185315 ATTTTGCCCCTGTCGAATGG 58.815 50.000 0.00 0.00 0.00 3.16
60 61 0.897863 TTTTGCCCCTGTCGAATGGG 60.898 55.000 15.07 15.07 42.98 4.00
61 62 1.784301 TTTGCCCCTGTCGAATGGGA 61.784 55.000 21.63 3.56 46.15 4.37
62 63 2.124695 GCCCCTGTCGAATGGGAC 60.125 66.667 21.63 9.60 46.15 4.46
63 64 2.590092 CCCCTGTCGAATGGGACC 59.410 66.667 21.63 0.00 46.15 4.46
64 65 2.590092 CCCTGTCGAATGGGACCC 59.410 66.667 16.60 2.45 46.15 4.46
65 66 2.297895 CCCTGTCGAATGGGACCCA 61.298 63.158 17.73 17.73 46.15 4.51
66 67 1.078426 CCTGTCGAATGGGACCCAC 60.078 63.158 17.78 2.66 35.80 4.61
67 68 1.447838 CTGTCGAATGGGACCCACG 60.448 63.158 17.78 16.54 35.80 4.94
68 69 1.884075 CTGTCGAATGGGACCCACGA 61.884 60.000 17.78 18.80 35.80 4.35
69 70 1.261938 TGTCGAATGGGACCCACGAT 61.262 55.000 24.40 11.58 35.21 3.73
70 71 0.810031 GTCGAATGGGACCCACGATG 60.810 60.000 24.40 12.28 35.21 3.84
71 72 0.973496 TCGAATGGGACCCACGATGA 60.973 55.000 17.78 8.95 35.80 2.92
72 73 0.107897 CGAATGGGACCCACGATGAA 60.108 55.000 17.78 0.00 35.80 2.57
73 74 1.677518 CGAATGGGACCCACGATGAAA 60.678 52.381 17.78 0.00 35.80 2.69
74 75 2.654863 GAATGGGACCCACGATGAAAT 58.345 47.619 17.78 0.00 35.80 2.17
75 76 2.348411 ATGGGACCCACGATGAAATC 57.652 50.000 17.78 0.00 35.80 2.17
76 77 0.254747 TGGGACCCACGATGAAATCC 59.745 55.000 9.95 0.00 41.39 3.01
77 78 0.465642 GGGACCCACGATGAAATCCC 60.466 60.000 5.33 0.00 41.39 3.85
78 79 0.546598 GGACCCACGATGAAATCCCT 59.453 55.000 0.00 0.00 41.39 4.20
79 80 1.766496 GGACCCACGATGAAATCCCTA 59.234 52.381 0.00 0.00 41.39 3.53
80 81 2.171870 GGACCCACGATGAAATCCCTAA 59.828 50.000 0.00 0.00 41.39 2.69
81 82 3.181443 GGACCCACGATGAAATCCCTAAT 60.181 47.826 0.00 0.00 41.39 1.73
82 83 4.461198 GACCCACGATGAAATCCCTAATT 58.539 43.478 0.00 0.00 41.39 1.40
83 84 4.867086 ACCCACGATGAAATCCCTAATTT 58.133 39.130 0.00 0.00 41.39 1.82
84 85 4.644685 ACCCACGATGAAATCCCTAATTTG 59.355 41.667 0.00 0.00 41.39 2.32
85 86 4.499696 CCCACGATGAAATCCCTAATTTGC 60.500 45.833 0.00 0.00 41.39 3.68
86 87 4.499696 CCACGATGAAATCCCTAATTTGCC 60.500 45.833 0.00 0.00 41.39 4.52
87 88 3.636764 ACGATGAAATCCCTAATTTGCCC 59.363 43.478 0.00 0.00 41.39 5.36
88 89 3.891366 CGATGAAATCCCTAATTTGCCCT 59.109 43.478 0.00 0.00 41.39 5.19
89 90 4.342092 CGATGAAATCCCTAATTTGCCCTT 59.658 41.667 0.00 0.00 41.39 3.95
90 91 5.163416 CGATGAAATCCCTAATTTGCCCTTT 60.163 40.000 0.00 0.00 41.39 3.11
91 92 5.419239 TGAAATCCCTAATTTGCCCTTTG 57.581 39.130 0.00 0.00 37.70 2.77
92 93 3.912496 AATCCCTAATTTGCCCTTTGC 57.088 42.857 0.00 0.00 41.77 3.68
93 94 9.683548 GATGAAATCCCTAATTTGCCCTTTGCA 62.684 40.741 0.00 0.00 43.05 4.08
102 103 2.555123 GCCCTTTGCAGTCGATTGA 58.445 52.632 12.67 0.00 40.77 2.57
103 104 0.449388 GCCCTTTGCAGTCGATTGAG 59.551 55.000 12.67 0.07 40.77 3.02
104 105 1.089920 CCCTTTGCAGTCGATTGAGG 58.910 55.000 12.67 9.41 0.00 3.86
105 106 1.339055 CCCTTTGCAGTCGATTGAGGA 60.339 52.381 12.67 0.00 0.00 3.71
106 107 2.636830 CCTTTGCAGTCGATTGAGGAT 58.363 47.619 12.67 0.00 0.00 3.24
107 108 3.432186 CCCTTTGCAGTCGATTGAGGATA 60.432 47.826 12.67 0.00 0.00 2.59
108 109 3.806521 CCTTTGCAGTCGATTGAGGATAG 59.193 47.826 12.67 1.28 0.00 2.08
109 110 2.515926 TGCAGTCGATTGAGGATAGC 57.484 50.000 12.67 0.00 0.00 2.97
110 111 1.069204 TGCAGTCGATTGAGGATAGCC 59.931 52.381 12.67 0.00 0.00 3.93
121 122 2.930109 AGGATAGCCTCGATACCCAT 57.070 50.000 0.00 0.00 42.19 4.00
122 123 2.741145 AGGATAGCCTCGATACCCATC 58.259 52.381 0.00 0.00 42.19 3.51
123 124 2.313342 AGGATAGCCTCGATACCCATCT 59.687 50.000 0.00 0.00 42.19 2.90
124 125 2.691011 GGATAGCCTCGATACCCATCTC 59.309 54.545 0.00 0.00 0.00 2.75
125 126 3.626222 GGATAGCCTCGATACCCATCTCT 60.626 52.174 0.00 0.00 0.00 3.10
126 127 1.917872 AGCCTCGATACCCATCTCTC 58.082 55.000 0.00 0.00 0.00 3.20
127 128 0.523966 GCCTCGATACCCATCTCTCG 59.476 60.000 0.00 0.00 0.00 4.04
128 129 1.898902 CCTCGATACCCATCTCTCGT 58.101 55.000 0.00 0.00 33.10 4.18
129 130 2.231529 CCTCGATACCCATCTCTCGTT 58.768 52.381 0.00 0.00 33.10 3.85
130 131 2.226912 CCTCGATACCCATCTCTCGTTC 59.773 54.545 0.00 0.00 33.10 3.95
131 132 1.871676 TCGATACCCATCTCTCGTTCG 59.128 52.381 0.00 0.00 33.10 3.95
132 133 1.602851 CGATACCCATCTCTCGTTCGT 59.397 52.381 0.00 0.00 0.00 3.85
133 134 2.349627 CGATACCCATCTCTCGTTCGTC 60.350 54.545 0.00 0.00 0.00 4.20
134 135 1.012086 TACCCATCTCTCGTTCGTCG 58.988 55.000 0.00 0.00 41.41 5.12
135 136 0.959372 ACCCATCTCTCGTTCGTCGT 60.959 55.000 0.00 0.00 40.80 4.34
136 137 0.248134 CCCATCTCTCGTTCGTCGTC 60.248 60.000 0.00 0.00 40.80 4.20
137 138 0.586748 CCATCTCTCGTTCGTCGTCG 60.587 60.000 0.00 0.00 40.80 5.12
138 139 1.060622 ATCTCTCGTTCGTCGTCGC 59.939 57.895 0.00 0.00 40.80 5.19
139 140 2.307137 ATCTCTCGTTCGTCGTCGCC 62.307 60.000 0.00 0.00 40.80 5.54
140 141 4.434938 TCTCGTTCGTCGTCGCCG 62.435 66.667 0.00 2.57 40.80 6.46
176 177 2.821366 TCGTCGGCGACTACCTCC 60.821 66.667 33.90 9.81 42.81 4.30
177 178 3.885521 CGTCGGCGACTACCTCCC 61.886 72.222 33.90 9.06 41.33 4.30
178 179 3.885521 GTCGGCGACTACCTCCCG 61.886 72.222 31.15 0.00 41.97 5.14
183 184 3.885521 CGACTACCTCCCGGCGTC 61.886 72.222 6.01 0.00 33.22 5.19
184 185 2.753043 GACTACCTCCCGGCGTCA 60.753 66.667 6.01 0.00 35.35 4.35
185 186 2.754658 ACTACCTCCCGGCGTCAG 60.755 66.667 6.01 0.06 0.00 3.51
186 187 4.208686 CTACCTCCCGGCGTCAGC 62.209 72.222 6.01 0.00 44.18 4.26
201 202 2.675317 CGTCAGCCTTCAAAGACCCTAG 60.675 54.545 0.00 0.00 0.00 3.02
202 203 2.567615 GTCAGCCTTCAAAGACCCTAGA 59.432 50.000 0.00 0.00 0.00 2.43
205 206 2.432510 AGCCTTCAAAGACCCTAGATCG 59.567 50.000 0.00 0.00 0.00 3.69
209 210 1.757118 TCAAAGACCCTAGATCGGCAG 59.243 52.381 0.00 0.00 0.00 4.85
263 264 3.826282 CCTCCTTGGCTCCTTGGA 58.174 61.111 0.00 0.00 0.00 3.53
274 275 1.152419 TCCTTGGAGACCACCACGA 60.152 57.895 0.00 0.00 39.85 4.35
298 299 1.079197 CATGGCGGCGCATATAGGA 60.079 57.895 34.36 7.87 0.00 2.94
299 300 0.673333 CATGGCGGCGCATATAGGAA 60.673 55.000 34.36 8.14 0.00 3.36
313 314 1.816074 TAGGAACGTCCATGGCAAAC 58.184 50.000 6.96 0.00 39.61 2.93
331 332 3.602513 CTGCTCCGTGCCTCTGCTT 62.603 63.158 0.00 0.00 42.00 3.91
332 333 3.123620 GCTCCGTGCCTCTGCTTG 61.124 66.667 0.00 0.00 38.71 4.01
388 389 3.730761 GCCACGTCCAGCTGCTTG 61.731 66.667 8.66 0.00 0.00 4.01
389 390 2.281070 CCACGTCCAGCTGCTTGT 60.281 61.111 8.66 2.38 0.00 3.16
396 397 4.711949 CAGCTGCTTGTCCCCGCT 62.712 66.667 0.00 0.00 0.00 5.52
400 401 4.329545 TGCTTGTCCCCGCTGTCC 62.330 66.667 0.00 0.00 0.00 4.02
411 412 2.632544 CGCTGTCCCGTGGTACTGA 61.633 63.158 0.00 0.00 0.00 3.41
416 417 1.305802 TCCCGTGGTACTGATGCCT 60.306 57.895 0.00 0.00 0.00 4.75
423 424 3.398310 TACTGATGCCTGCCGCCA 61.398 61.111 0.00 0.00 36.24 5.69
439 443 1.079127 CCACCACGGGCTACTTCTG 60.079 63.158 0.00 0.00 0.00 3.02
449 453 1.276415 GCTACTTCTGCTGCTTCTCG 58.724 55.000 0.00 0.00 0.00 4.04
451 455 2.159366 GCTACTTCTGCTGCTTCTCGTA 60.159 50.000 0.00 0.00 0.00 3.43
476 489 2.817423 GCATACTGCTGCTCGCCAC 61.817 63.158 0.00 0.00 40.96 5.01
518 531 2.338620 CCAAGTCGCGACTCACCA 59.661 61.111 39.19 0.00 41.58 4.17
527 540 1.514228 CGACTCACCATGGACGTCG 60.514 63.158 27.13 27.13 40.92 5.12
537 550 3.885521 GGACGTCGGGAGGTAGCG 61.886 72.222 9.92 0.00 0.00 4.26
577 615 2.034532 CCTGTGTCCTGGCATGCA 59.965 61.111 21.36 4.79 0.00 3.96
578 616 1.379443 CCTGTGTCCTGGCATGCAT 60.379 57.895 21.36 0.00 0.00 3.96
586 624 4.471908 TGGCATGCATCGGCGTCT 62.472 61.111 21.36 0.00 45.35 4.18
591 631 0.578683 CATGCATCGGCGTCTAACAG 59.421 55.000 6.85 0.00 45.35 3.16
623 663 2.094752 GCATACTTGCCCATCGTTTTGT 60.095 45.455 0.00 0.00 43.38 2.83
629 669 2.088423 TGCCCATCGTTTTGTCCATAC 58.912 47.619 0.00 0.00 0.00 2.39
639 679 8.998377 CATCGTTTTGTCCATACAATATATCCA 58.002 33.333 0.00 0.00 44.85 3.41
640 680 9.739276 ATCGTTTTGTCCATACAATATATCCAT 57.261 29.630 0.00 0.00 44.85 3.41
641 681 9.214957 TCGTTTTGTCCATACAATATATCCATC 57.785 33.333 0.00 0.00 44.85 3.51
642 682 8.998377 CGTTTTGTCCATACAATATATCCATCA 58.002 33.333 0.00 0.00 44.85 3.07
647 687 8.959548 TGTCCATACAATATATCCATCATTTGC 58.040 33.333 0.00 0.00 30.91 3.68
648 688 8.959548 GTCCATACAATATATCCATCATTTGCA 58.040 33.333 0.00 0.00 0.00 4.08
649 689 9.531158 TCCATACAATATATCCATCATTTGCAA 57.469 29.630 0.00 0.00 0.00 4.08
650 690 9.797556 CCATACAATATATCCATCATTTGCAAG 57.202 33.333 0.00 0.00 0.00 4.01
699 739 6.558771 AAAAATCAAATGGCAAACTAAGGC 57.441 33.333 0.00 0.00 0.00 4.35
704 744 4.074647 GGCAAACTAAGGCCGTGT 57.925 55.556 0.00 0.00 40.93 4.49
705 745 2.337361 GGCAAACTAAGGCCGTGTT 58.663 52.632 0.00 3.21 40.93 3.32
706 746 0.240145 GGCAAACTAAGGCCGTGTTC 59.760 55.000 0.00 0.00 40.93 3.18
707 747 0.110373 GCAAACTAAGGCCGTGTTCG 60.110 55.000 0.00 0.00 0.00 3.95
717 757 4.379243 CGTGTTCGGCAGCCCTCT 62.379 66.667 5.63 0.00 0.00 3.69
718 758 2.743928 GTGTTCGGCAGCCCTCTG 60.744 66.667 5.63 0.00 43.16 3.35
730 770 4.140599 CCTCTGCTTCGCGGCTCT 62.141 66.667 6.13 0.00 34.49 4.09
731 771 2.884685 CTCTGCTTCGCGGCTCTG 60.885 66.667 6.13 0.00 34.49 3.35
736 776 4.140599 CTTCGCGGCTCTGCTCCT 62.141 66.667 6.13 0.00 0.00 3.69
737 777 4.441695 TTCGCGGCTCTGCTCCTG 62.442 66.667 6.13 0.00 0.00 3.86
739 779 4.441695 CGCGGCTCTGCTCCTGAA 62.442 66.667 0.00 0.00 0.00 3.02
740 780 2.511145 GCGGCTCTGCTCCTGAAG 60.511 66.667 0.00 0.00 0.00 3.02
748 788 4.087892 GCTCCTGAAGCGGCCAGA 62.088 66.667 2.24 0.00 42.21 3.86
749 789 2.186384 CTCCTGAAGCGGCCAGAG 59.814 66.667 2.24 0.00 33.65 3.35
750 790 4.087892 TCCTGAAGCGGCCAGAGC 62.088 66.667 2.24 0.00 33.65 4.09
771 811 2.252260 GCGACGTGCAGTGCAATT 59.748 55.556 21.67 9.67 41.47 2.32
772 812 1.370414 GCGACGTGCAGTGCAATTT 60.370 52.632 21.67 6.74 41.47 1.82
773 813 0.934436 GCGACGTGCAGTGCAATTTT 60.934 50.000 21.67 3.87 41.47 1.82
774 814 1.044725 CGACGTGCAGTGCAATTTTC 58.955 50.000 21.67 12.33 41.47 2.29
775 815 1.334059 CGACGTGCAGTGCAATTTTCT 60.334 47.619 21.67 0.00 41.47 2.52
776 816 2.046313 GACGTGCAGTGCAATTTTCTG 58.954 47.619 21.67 6.39 41.47 3.02
777 817 1.675483 ACGTGCAGTGCAATTTTCTGA 59.325 42.857 21.67 0.00 41.47 3.27
778 818 2.098934 ACGTGCAGTGCAATTTTCTGAA 59.901 40.909 21.67 0.00 41.47 3.02
779 819 2.722629 CGTGCAGTGCAATTTTCTGAAG 59.277 45.455 21.67 0.00 41.47 3.02
780 820 3.709987 GTGCAGTGCAATTTTCTGAAGT 58.290 40.909 21.67 0.00 41.47 3.01
781 821 4.114794 GTGCAGTGCAATTTTCTGAAGTT 58.885 39.130 21.67 0.00 41.47 2.66
782 822 4.026310 GTGCAGTGCAATTTTCTGAAGTTG 60.026 41.667 21.67 11.13 41.47 3.16
791 831 7.293402 CAATTTTCTGAAGTTGCAAAACTGA 57.707 32.000 0.00 2.66 32.47 3.41
792 832 6.892310 ATTTTCTGAAGTTGCAAAACTGAC 57.108 33.333 0.00 0.00 32.47 3.51
793 833 3.673746 TCTGAAGTTGCAAAACTGACG 57.326 42.857 0.00 0.00 32.47 4.35
794 834 3.266636 TCTGAAGTTGCAAAACTGACGA 58.733 40.909 0.00 0.00 32.47 4.20
795 835 3.876914 TCTGAAGTTGCAAAACTGACGAT 59.123 39.130 0.00 0.00 32.47 3.73
796 836 4.335315 TCTGAAGTTGCAAAACTGACGATT 59.665 37.500 0.00 0.00 32.47 3.34
797 837 4.597079 TGAAGTTGCAAAACTGACGATTC 58.403 39.130 0.00 0.00 32.47 2.52
798 838 3.253371 AGTTGCAAAACTGACGATTCG 57.747 42.857 0.00 4.14 0.00 3.34
799 839 2.612212 AGTTGCAAAACTGACGATTCGT 59.388 40.909 12.25 12.25 45.10 3.85
800 840 3.064820 AGTTGCAAAACTGACGATTCGTT 59.935 39.130 13.72 0.00 41.37 3.85
801 841 3.247563 TGCAAAACTGACGATTCGTTC 57.752 42.857 13.72 7.34 41.37 3.95
809 849 2.202570 CGATTCGTTCGCTCCCGT 60.203 61.111 0.00 0.00 41.69 5.28
810 850 1.063006 CGATTCGTTCGCTCCCGTA 59.937 57.895 0.00 0.00 41.69 4.02
811 851 0.317603 CGATTCGTTCGCTCCCGTAT 60.318 55.000 0.00 0.00 41.69 3.06
812 852 1.849097 GATTCGTTCGCTCCCGTATT 58.151 50.000 0.00 0.00 35.54 1.89
813 853 2.602933 CGATTCGTTCGCTCCCGTATTA 60.603 50.000 0.00 0.00 41.69 0.98
814 854 3.572584 GATTCGTTCGCTCCCGTATTAT 58.427 45.455 0.00 0.00 35.54 1.28
815 855 4.669965 CGATTCGTTCGCTCCCGTATTATA 60.670 45.833 0.00 0.00 41.69 0.98
816 856 3.542712 TCGTTCGCTCCCGTATTATAC 57.457 47.619 0.00 0.00 35.54 1.47
837 877 3.172919 GCTGAAGAGCTGCCGAAC 58.827 61.111 0.00 0.00 42.52 3.95
838 878 1.669115 GCTGAAGAGCTGCCGAACA 60.669 57.895 0.00 0.00 42.52 3.18
839 879 1.230635 GCTGAAGAGCTGCCGAACAA 61.231 55.000 0.00 0.00 42.52 2.83
840 880 0.795085 CTGAAGAGCTGCCGAACAAG 59.205 55.000 0.00 0.00 0.00 3.16
841 881 0.392706 TGAAGAGCTGCCGAACAAGA 59.607 50.000 0.00 0.00 0.00 3.02
842 882 0.793250 GAAGAGCTGCCGAACAAGAC 59.207 55.000 0.00 0.00 0.00 3.01
843 883 0.603975 AAGAGCTGCCGAACAAGACC 60.604 55.000 0.00 0.00 0.00 3.85
844 884 1.004440 GAGCTGCCGAACAAGACCT 60.004 57.895 0.00 0.00 0.00 3.85
845 885 0.246635 GAGCTGCCGAACAAGACCTA 59.753 55.000 0.00 0.00 0.00 3.08
846 886 0.685097 AGCTGCCGAACAAGACCTAA 59.315 50.000 0.00 0.00 0.00 2.69
847 887 1.071699 AGCTGCCGAACAAGACCTAAA 59.928 47.619 0.00 0.00 0.00 1.85
848 888 1.464997 GCTGCCGAACAAGACCTAAAG 59.535 52.381 0.00 0.00 0.00 1.85
849 889 2.870435 GCTGCCGAACAAGACCTAAAGA 60.870 50.000 0.00 0.00 0.00 2.52
850 890 2.996621 CTGCCGAACAAGACCTAAAGAG 59.003 50.000 0.00 0.00 0.00 2.85
851 891 2.367567 TGCCGAACAAGACCTAAAGAGT 59.632 45.455 0.00 0.00 0.00 3.24
852 892 2.737252 GCCGAACAAGACCTAAAGAGTG 59.263 50.000 0.00 0.00 0.00 3.51
853 893 3.326747 CCGAACAAGACCTAAAGAGTGG 58.673 50.000 0.00 0.00 0.00 4.00
854 894 2.737252 CGAACAAGACCTAAAGAGTGGC 59.263 50.000 0.00 0.00 0.00 5.01
855 895 3.740115 GAACAAGACCTAAAGAGTGGCA 58.260 45.455 0.00 0.00 0.00 4.92
856 896 3.857157 ACAAGACCTAAAGAGTGGCAA 57.143 42.857 0.00 0.00 0.00 4.52
857 897 4.164843 ACAAGACCTAAAGAGTGGCAAA 57.835 40.909 0.00 0.00 0.00 3.68
858 898 4.532834 ACAAGACCTAAAGAGTGGCAAAA 58.467 39.130 0.00 0.00 0.00 2.44
859 899 4.580580 ACAAGACCTAAAGAGTGGCAAAAG 59.419 41.667 0.00 0.00 0.00 2.27
860 900 4.706842 AGACCTAAAGAGTGGCAAAAGA 57.293 40.909 0.00 0.00 0.00 2.52
861 901 5.248380 AGACCTAAAGAGTGGCAAAAGAT 57.752 39.130 0.00 0.00 0.00 2.40
862 902 5.249420 AGACCTAAAGAGTGGCAAAAGATC 58.751 41.667 0.00 0.00 0.00 2.75
863 903 4.985538 ACCTAAAGAGTGGCAAAAGATCA 58.014 39.130 0.00 0.00 0.00 2.92
864 904 5.574188 ACCTAAAGAGTGGCAAAAGATCAT 58.426 37.500 0.00 0.00 0.00 2.45
865 905 6.012745 ACCTAAAGAGTGGCAAAAGATCATT 58.987 36.000 0.00 0.00 0.00 2.57
866 906 6.494835 ACCTAAAGAGTGGCAAAAGATCATTT 59.505 34.615 0.00 0.00 0.00 2.32
867 907 7.669722 ACCTAAAGAGTGGCAAAAGATCATTTA 59.330 33.333 0.00 0.00 0.00 1.40
868 908 7.970614 CCTAAAGAGTGGCAAAAGATCATTTAC 59.029 37.037 0.00 0.00 0.00 2.01
869 909 6.899393 AAGAGTGGCAAAAGATCATTTACA 57.101 33.333 0.00 0.00 0.00 2.41
870 910 6.899393 AGAGTGGCAAAAGATCATTTACAA 57.101 33.333 0.00 0.00 0.00 2.41
871 911 7.472334 AGAGTGGCAAAAGATCATTTACAAT 57.528 32.000 0.00 0.00 0.00 2.71
872 912 7.542025 AGAGTGGCAAAAGATCATTTACAATC 58.458 34.615 14.53 14.53 0.00 2.67
873 913 7.395489 AGAGTGGCAAAAGATCATTTACAATCT 59.605 33.333 17.19 17.19 33.19 2.40
874 914 8.579850 AGTGGCAAAAGATCATTTACAATCTA 57.420 30.769 0.00 0.00 32.01 1.98
875 915 9.023962 AGTGGCAAAAGATCATTTACAATCTAA 57.976 29.630 0.00 0.00 32.01 2.10
876 916 9.294030 GTGGCAAAAGATCATTTACAATCTAAG 57.706 33.333 0.00 0.00 32.01 2.18
877 917 7.975616 TGGCAAAAGATCATTTACAATCTAAGC 59.024 33.333 0.00 0.00 32.01 3.09
878 918 7.975616 GGCAAAAGATCATTTACAATCTAAGCA 59.024 33.333 0.00 0.00 32.01 3.91
879 919 9.017669 GCAAAAGATCATTTACAATCTAAGCAG 57.982 33.333 0.00 0.00 32.01 4.24
882 922 9.453572 AAAGATCATTTACAATCTAAGCAGTGA 57.546 29.630 0.00 0.00 32.01 3.41
883 923 8.430801 AGATCATTTACAATCTAAGCAGTGAC 57.569 34.615 0.00 0.00 30.50 3.67
884 924 8.043113 AGATCATTTACAATCTAAGCAGTGACA 58.957 33.333 0.00 0.00 30.50 3.58
885 925 7.977789 TCATTTACAATCTAAGCAGTGACAA 57.022 32.000 0.00 0.00 0.00 3.18
886 926 8.389779 TCATTTACAATCTAAGCAGTGACAAA 57.610 30.769 0.00 0.00 0.00 2.83
887 927 9.013229 TCATTTACAATCTAAGCAGTGACAAAT 57.987 29.630 0.00 0.00 0.00 2.32
888 928 9.630098 CATTTACAATCTAAGCAGTGACAAATT 57.370 29.630 0.00 0.00 0.00 1.82
889 929 9.630098 ATTTACAATCTAAGCAGTGACAAATTG 57.370 29.630 0.00 0.00 0.00 2.32
890 930 6.639632 ACAATCTAAGCAGTGACAAATTGT 57.360 33.333 0.00 0.00 32.77 2.71
891 931 7.042797 ACAATCTAAGCAGTGACAAATTGTT 57.957 32.000 0.00 0.00 33.58 2.83
892 932 8.165239 ACAATCTAAGCAGTGACAAATTGTTA 57.835 30.769 0.00 0.00 33.58 2.41
893 933 8.629158 ACAATCTAAGCAGTGACAAATTGTTAA 58.371 29.630 0.00 0.00 33.58 2.01
894 934 9.462174 CAATCTAAGCAGTGACAAATTGTTAAA 57.538 29.630 0.00 0.00 0.00 1.52
895 935 9.683069 AATCTAAGCAGTGACAAATTGTTAAAG 57.317 29.630 0.00 0.00 0.00 1.85
896 936 8.220755 TCTAAGCAGTGACAAATTGTTAAAGT 57.779 30.769 0.00 0.00 0.00 2.66
897 937 8.342634 TCTAAGCAGTGACAAATTGTTAAAGTC 58.657 33.333 0.00 0.00 0.00 3.01
898 938 5.831997 AGCAGTGACAAATTGTTAAAGTCC 58.168 37.500 0.00 0.00 0.00 3.85
899 939 5.359576 AGCAGTGACAAATTGTTAAAGTCCA 59.640 36.000 0.00 0.00 0.00 4.02
900 940 6.039616 GCAGTGACAAATTGTTAAAGTCCAA 58.960 36.000 0.00 0.00 0.00 3.53
901 941 6.533367 GCAGTGACAAATTGTTAAAGTCCAAA 59.467 34.615 0.00 0.00 0.00 3.28
902 942 7.254084 GCAGTGACAAATTGTTAAAGTCCAAAG 60.254 37.037 0.00 0.00 0.00 2.77
903 943 7.759433 CAGTGACAAATTGTTAAAGTCCAAAGT 59.241 33.333 0.00 0.00 0.00 2.66
904 944 8.962679 AGTGACAAATTGTTAAAGTCCAAAGTA 58.037 29.630 0.00 0.00 0.00 2.24
905 945 9.575783 GTGACAAATTGTTAAAGTCCAAAGTAA 57.424 29.630 0.00 0.00 0.00 2.24
906 946 9.796120 TGACAAATTGTTAAAGTCCAAAGTAAG 57.204 29.630 0.00 0.00 0.00 2.34
907 947 9.797556 GACAAATTGTTAAAGTCCAAAGTAAGT 57.202 29.630 0.00 0.00 0.00 2.24
912 952 8.441312 TTGTTAAAGTCCAAAGTAAGTAGTGG 57.559 34.615 0.00 0.00 0.00 4.00
913 953 6.484308 TGTTAAAGTCCAAAGTAAGTAGTGGC 59.516 38.462 0.00 0.00 0.00 5.01
914 954 4.976540 AAGTCCAAAGTAAGTAGTGGCT 57.023 40.909 0.00 0.00 0.00 4.75
915 955 4.273148 AGTCCAAAGTAAGTAGTGGCTG 57.727 45.455 0.00 0.00 0.00 4.85
916 956 3.901844 AGTCCAAAGTAAGTAGTGGCTGA 59.098 43.478 0.00 0.00 0.00 4.26
917 957 4.347000 AGTCCAAAGTAAGTAGTGGCTGAA 59.653 41.667 0.00 0.00 0.00 3.02
918 958 5.061179 GTCCAAAGTAAGTAGTGGCTGAAA 58.939 41.667 0.00 0.00 0.00 2.69
919 959 5.529800 GTCCAAAGTAAGTAGTGGCTGAAAA 59.470 40.000 0.00 0.00 0.00 2.29
920 960 6.206829 GTCCAAAGTAAGTAGTGGCTGAAAAT 59.793 38.462 0.00 0.00 0.00 1.82
921 961 6.430000 TCCAAAGTAAGTAGTGGCTGAAAATC 59.570 38.462 0.00 0.00 0.00 2.17
922 962 6.206634 CCAAAGTAAGTAGTGGCTGAAAATCA 59.793 38.462 0.00 0.00 0.00 2.57
923 963 7.255451 CCAAAGTAAGTAGTGGCTGAAAATCAA 60.255 37.037 0.00 0.00 0.00 2.57
924 964 7.817418 AAGTAAGTAGTGGCTGAAAATCAAA 57.183 32.000 0.00 0.00 0.00 2.69
925 965 8.409358 AAGTAAGTAGTGGCTGAAAATCAAAT 57.591 30.769 0.00 0.00 0.00 2.32
926 966 8.045176 AGTAAGTAGTGGCTGAAAATCAAATC 57.955 34.615 0.00 0.00 0.00 2.17
927 967 5.551760 AGTAGTGGCTGAAAATCAAATCG 57.448 39.130 0.00 0.00 0.00 3.34
932 972 1.798813 GCTGAAAATCAAATCGCCCCG 60.799 52.381 0.00 0.00 0.00 5.73
964 1004 4.458989 TCAGATTTGGTAAGCATTCACACC 59.541 41.667 0.00 0.00 0.00 4.16
1014 1054 4.508128 TCGATGACCTTCGCCGGC 62.508 66.667 19.07 19.07 38.97 6.13
1248 1288 3.257561 CGAATCGCCTCGCACCTG 61.258 66.667 0.00 0.00 31.04 4.00
1263 1303 2.465813 CACCTGTCCATTCTCTCCTCT 58.534 52.381 0.00 0.00 0.00 3.69
1401 1441 2.126228 TCGCGCCTAAAGTCACCG 60.126 61.111 0.00 0.00 0.00 4.94
1407 1447 0.458025 GCCTAAAGTCACCGGTCGAG 60.458 60.000 2.59 0.00 0.00 4.04
1458 1498 2.907917 CTCCTAGCCGCCGCTACT 60.908 66.667 2.40 0.00 46.08 2.57
1483 1523 1.567649 TCCTAAACGGCCTCCTCTCTA 59.432 52.381 0.00 0.00 0.00 2.43
1507 1547 1.957177 TCTCCGAGCAGGTACATGATC 59.043 52.381 15.38 15.38 41.99 2.92
1520 1560 5.128499 AGGTACATGATCTGGTCTTCTTCTG 59.872 44.000 0.00 0.00 0.00 3.02
1560 3113 0.464452 GTCCCTAGGTCATCCAACGG 59.536 60.000 8.29 0.00 35.89 4.44
1578 3131 1.948834 CGGACCATATTGCAGCAATGA 59.051 47.619 27.91 13.75 35.54 2.57
1623 3176 1.078001 TGTTTAGGGGCCGCTAAGC 60.078 57.895 35.00 35.00 0.00 3.09
1882 3435 7.262772 TGGAACTTAGAACTGTTATACATCCG 58.737 38.462 11.95 0.00 0.00 4.18
2084 3638 6.773976 TTTTTGAAAGATCCAGCCGATTAT 57.226 33.333 0.00 0.00 0.00 1.28
2170 3725 6.999272 AGTACGAGAATCACTGACCATAGTAT 59.001 38.462 0.00 0.00 33.17 2.12
2306 3861 3.483808 TTGGTGACTCTGCATACAACA 57.516 42.857 0.00 0.00 0.00 3.33
2394 3950 6.945636 TCCTGAACAGAAAGATTAACCCTA 57.054 37.500 3.19 0.00 0.00 3.53
2487 4043 7.121463 TGACTTTGGAGTACTGTTTTTGCTAAA 59.879 33.333 0.00 0.00 35.88 1.85
2534 4090 4.142469 GGCTTTTGTCACTAGTGTTGTTGT 60.142 41.667 21.99 0.00 0.00 3.32
2542 4098 6.819146 TGTCACTAGTGTTGTTGTCATTGTAA 59.181 34.615 21.99 0.00 0.00 2.41
2598 4154 8.649841 CATAACTTTGTTGCATGGTAGATTTTG 58.350 33.333 0.00 0.00 0.00 2.44
2606 4162 4.634004 TGCATGGTAGATTTTGTACCTTCG 59.366 41.667 0.00 0.00 40.70 3.79
2658 4214 3.054728 TCCTTCGTCCATGCATAGGAAAA 60.055 43.478 16.37 13.17 36.80 2.29
2704 4260 7.490657 TTGACTTACAACATCTACCATAGGT 57.509 36.000 0.00 0.00 35.07 3.08
2736 4292 3.241784 CGCAACGCACTATGTTTGTTTTT 59.758 39.130 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.175787 ACAAAGTAACGTGTGGCAAAAA 57.824 36.364 0.00 0.00 0.00 1.94
11 12 3.851976 ACAAAGTAACGTGTGGCAAAA 57.148 38.095 0.00 0.00 0.00 2.44
12 13 3.940221 AGTACAAAGTAACGTGTGGCAAA 59.060 39.130 0.00 0.00 0.00 3.68
13 14 3.533547 AGTACAAAGTAACGTGTGGCAA 58.466 40.909 0.00 0.00 0.00 4.52
14 15 3.182341 AGTACAAAGTAACGTGTGGCA 57.818 42.857 0.00 0.00 0.00 4.92
15 16 4.034279 TCAAAGTACAAAGTAACGTGTGGC 59.966 41.667 0.00 0.00 0.00 5.01
16 17 5.721876 TCAAAGTACAAAGTAACGTGTGG 57.278 39.130 0.00 0.00 0.00 4.17
17 18 9.872757 AAATATCAAAGTACAAAGTAACGTGTG 57.127 29.630 0.00 0.00 0.00 3.82
20 21 9.389570 GCAAAATATCAAAGTACAAAGTAACGT 57.610 29.630 0.00 0.00 0.00 3.99
21 22 8.846607 GGCAAAATATCAAAGTACAAAGTAACG 58.153 33.333 0.00 0.00 0.00 3.18
22 23 9.135843 GGGCAAAATATCAAAGTACAAAGTAAC 57.864 33.333 0.00 0.00 0.00 2.50
23 24 8.308207 GGGGCAAAATATCAAAGTACAAAGTAA 58.692 33.333 0.00 0.00 0.00 2.24
24 25 7.672239 AGGGGCAAAATATCAAAGTACAAAGTA 59.328 33.333 0.00 0.00 0.00 2.24
25 26 6.496911 AGGGGCAAAATATCAAAGTACAAAGT 59.503 34.615 0.00 0.00 0.00 2.66
26 27 6.813152 CAGGGGCAAAATATCAAAGTACAAAG 59.187 38.462 0.00 0.00 0.00 2.77
27 28 6.268847 ACAGGGGCAAAATATCAAAGTACAAA 59.731 34.615 0.00 0.00 0.00 2.83
28 29 5.777732 ACAGGGGCAAAATATCAAAGTACAA 59.222 36.000 0.00 0.00 0.00 2.41
29 30 5.329399 ACAGGGGCAAAATATCAAAGTACA 58.671 37.500 0.00 0.00 0.00 2.90
30 31 5.448632 CGACAGGGGCAAAATATCAAAGTAC 60.449 44.000 0.00 0.00 0.00 2.73
31 32 4.638421 CGACAGGGGCAAAATATCAAAGTA 59.362 41.667 0.00 0.00 0.00 2.24
32 33 3.443681 CGACAGGGGCAAAATATCAAAGT 59.556 43.478 0.00 0.00 0.00 2.66
33 34 3.694072 TCGACAGGGGCAAAATATCAAAG 59.306 43.478 0.00 0.00 0.00 2.77
34 35 3.691575 TCGACAGGGGCAAAATATCAAA 58.308 40.909 0.00 0.00 0.00 2.69
35 36 3.358111 TCGACAGGGGCAAAATATCAA 57.642 42.857 0.00 0.00 0.00 2.57
36 37 3.358111 TTCGACAGGGGCAAAATATCA 57.642 42.857 0.00 0.00 0.00 2.15
37 38 3.004734 CCATTCGACAGGGGCAAAATATC 59.995 47.826 0.00 0.00 0.00 1.63
38 39 2.958355 CCATTCGACAGGGGCAAAATAT 59.042 45.455 0.00 0.00 0.00 1.28
39 40 2.374184 CCATTCGACAGGGGCAAAATA 58.626 47.619 0.00 0.00 0.00 1.40
40 41 1.185315 CCATTCGACAGGGGCAAAAT 58.815 50.000 0.00 0.00 0.00 1.82
41 42 0.897863 CCCATTCGACAGGGGCAAAA 60.898 55.000 12.61 0.00 41.58 2.44
42 43 1.304052 CCCATTCGACAGGGGCAAA 60.304 57.895 12.61 0.00 41.58 3.68
43 44 2.227757 TCCCATTCGACAGGGGCAA 61.228 57.895 18.69 0.15 45.51 4.52
44 45 2.609299 TCCCATTCGACAGGGGCA 60.609 61.111 18.69 0.81 45.51 5.36
45 46 2.124695 GTCCCATTCGACAGGGGC 60.125 66.667 18.69 14.65 45.51 5.80
46 47 2.590092 GGTCCCATTCGACAGGGG 59.410 66.667 18.69 13.82 45.51 4.79
47 48 2.297895 TGGGTCCCATTCGACAGGG 61.298 63.158 6.47 14.00 46.90 4.45
48 49 1.078426 GTGGGTCCCATTCGACAGG 60.078 63.158 15.49 0.00 35.28 4.00
49 50 1.447838 CGTGGGTCCCATTCGACAG 60.448 63.158 15.49 0.00 35.28 3.51
50 51 1.261938 ATCGTGGGTCCCATTCGACA 61.262 55.000 22.21 5.45 35.46 4.35
51 52 0.810031 CATCGTGGGTCCCATTCGAC 60.810 60.000 22.21 5.66 35.46 4.20
52 53 0.973496 TCATCGTGGGTCCCATTCGA 60.973 55.000 22.06 22.06 36.68 3.71
53 54 0.107897 TTCATCGTGGGTCCCATTCG 60.108 55.000 15.49 14.34 35.28 3.34
54 55 2.122783 TTTCATCGTGGGTCCCATTC 57.877 50.000 15.49 0.37 35.28 2.67
55 56 2.654863 GATTTCATCGTGGGTCCCATT 58.345 47.619 15.49 0.00 35.28 3.16
56 57 1.133792 GGATTTCATCGTGGGTCCCAT 60.134 52.381 15.49 0.00 35.28 4.00
57 58 0.254747 GGATTTCATCGTGGGTCCCA 59.745 55.000 6.47 6.47 0.00 4.37
58 59 0.465642 GGGATTTCATCGTGGGTCCC 60.466 60.000 0.00 0.00 38.61 4.46
59 60 0.546598 AGGGATTTCATCGTGGGTCC 59.453 55.000 0.00 0.00 0.00 4.46
60 61 3.553828 TTAGGGATTTCATCGTGGGTC 57.446 47.619 0.00 0.00 0.00 4.46
61 62 4.519906 AATTAGGGATTTCATCGTGGGT 57.480 40.909 0.00 0.00 0.00 4.51
62 63 4.499696 GCAAATTAGGGATTTCATCGTGGG 60.500 45.833 0.00 0.00 35.79 4.61
63 64 4.499696 GGCAAATTAGGGATTTCATCGTGG 60.500 45.833 0.00 0.00 35.79 4.94
64 65 4.499696 GGGCAAATTAGGGATTTCATCGTG 60.500 45.833 0.00 0.00 35.79 4.35
65 66 3.636764 GGGCAAATTAGGGATTTCATCGT 59.363 43.478 0.00 0.00 35.79 3.73
66 67 3.891366 AGGGCAAATTAGGGATTTCATCG 59.109 43.478 0.00 0.00 35.79 3.84
67 68 5.876651 AAGGGCAAATTAGGGATTTCATC 57.123 39.130 0.00 0.00 35.79 2.92
68 69 5.629834 GCAAAGGGCAAATTAGGGATTTCAT 60.630 40.000 0.00 0.00 43.97 2.57
69 70 4.323409 GCAAAGGGCAAATTAGGGATTTCA 60.323 41.667 0.00 0.00 43.97 2.69
70 71 4.191544 GCAAAGGGCAAATTAGGGATTTC 58.808 43.478 0.00 0.00 43.97 2.17
71 72 4.220693 GCAAAGGGCAAATTAGGGATTT 57.779 40.909 0.00 0.00 43.97 2.17
72 73 3.912496 GCAAAGGGCAAATTAGGGATT 57.088 42.857 0.00 0.00 43.97 3.01
84 85 0.449388 CTCAATCGACTGCAAAGGGC 59.551 55.000 0.00 0.00 45.13 5.19
85 86 1.089920 CCTCAATCGACTGCAAAGGG 58.910 55.000 0.00 0.00 0.00 3.95
86 87 2.099141 TCCTCAATCGACTGCAAAGG 57.901 50.000 0.00 0.00 0.00 3.11
87 88 3.247173 GCTATCCTCAATCGACTGCAAAG 59.753 47.826 0.00 0.00 0.00 2.77
88 89 3.198068 GCTATCCTCAATCGACTGCAAA 58.802 45.455 0.00 0.00 0.00 3.68
89 90 2.483714 GGCTATCCTCAATCGACTGCAA 60.484 50.000 0.00 0.00 0.00 4.08
90 91 1.069204 GGCTATCCTCAATCGACTGCA 59.931 52.381 0.00 0.00 0.00 4.41
91 92 1.342819 AGGCTATCCTCAATCGACTGC 59.657 52.381 0.00 0.00 38.72 4.40
103 104 2.691011 GAGATGGGTATCGAGGCTATCC 59.309 54.545 0.00 0.00 38.38 2.59
104 105 3.626930 AGAGATGGGTATCGAGGCTATC 58.373 50.000 0.00 0.00 38.38 2.08
105 106 3.626930 GAGAGATGGGTATCGAGGCTAT 58.373 50.000 0.00 0.00 38.38 2.97
106 107 2.615747 CGAGAGATGGGTATCGAGGCTA 60.616 54.545 0.00 0.00 38.38 3.93
107 108 1.884497 CGAGAGATGGGTATCGAGGCT 60.884 57.143 0.00 0.00 38.38 4.58
108 109 0.523966 CGAGAGATGGGTATCGAGGC 59.476 60.000 0.00 0.00 38.38 4.70
109 110 1.898902 ACGAGAGATGGGTATCGAGG 58.101 55.000 0.00 0.00 38.38 4.63
110 111 2.096169 CGAACGAGAGATGGGTATCGAG 60.096 54.545 0.00 0.00 38.38 4.04
111 112 1.871676 CGAACGAGAGATGGGTATCGA 59.128 52.381 0.00 0.00 38.38 3.59
112 113 1.602851 ACGAACGAGAGATGGGTATCG 59.397 52.381 0.14 0.00 38.38 2.92
113 114 2.349627 CGACGAACGAGAGATGGGTATC 60.350 54.545 0.14 0.00 45.77 2.24
114 115 1.602851 CGACGAACGAGAGATGGGTAT 59.397 52.381 0.14 0.00 45.77 2.73
115 116 1.012086 CGACGAACGAGAGATGGGTA 58.988 55.000 0.14 0.00 45.77 3.69
116 117 0.959372 ACGACGAACGAGAGATGGGT 60.959 55.000 0.00 0.00 45.77 4.51
117 118 0.248134 GACGACGAACGAGAGATGGG 60.248 60.000 0.00 0.00 45.77 4.00
118 119 0.586748 CGACGACGAACGAGAGATGG 60.587 60.000 0.00 0.00 45.77 3.51
119 120 1.188769 GCGACGACGAACGAGAGATG 61.189 60.000 12.29 0.00 45.77 2.90
120 121 1.060622 GCGACGACGAACGAGAGAT 59.939 57.895 12.29 0.00 45.77 2.75
121 122 2.473378 GCGACGACGAACGAGAGA 59.527 61.111 12.29 0.00 45.77 3.10
122 123 2.573689 GGCGACGACGAACGAGAG 60.574 66.667 12.29 5.56 45.77 3.20
160 161 3.885521 GGGAGGTAGTCGCCGACG 61.886 72.222 12.13 0.00 37.67 5.12
161 162 3.885521 CGGGAGGTAGTCGCCGAC 61.886 72.222 9.71 9.71 39.88 4.79
179 180 1.578206 GGGTCTTTGAAGGCTGACGC 61.578 60.000 3.78 3.78 35.78 5.19
180 181 0.035458 AGGGTCTTTGAAGGCTGACG 59.965 55.000 0.00 0.00 0.00 4.35
181 182 2.567615 TCTAGGGTCTTTGAAGGCTGAC 59.432 50.000 0.00 0.00 0.00 3.51
182 183 2.902608 TCTAGGGTCTTTGAAGGCTGA 58.097 47.619 0.00 0.00 0.00 4.26
183 184 3.739519 CGATCTAGGGTCTTTGAAGGCTG 60.740 52.174 0.00 0.00 0.00 4.85
184 185 2.432510 CGATCTAGGGTCTTTGAAGGCT 59.567 50.000 0.00 0.00 0.00 4.58
185 186 2.483889 CCGATCTAGGGTCTTTGAAGGC 60.484 54.545 0.00 0.00 0.00 4.35
186 187 2.483889 GCCGATCTAGGGTCTTTGAAGG 60.484 54.545 0.00 0.00 0.00 3.46
187 188 2.168521 TGCCGATCTAGGGTCTTTGAAG 59.831 50.000 0.00 0.00 0.00 3.02
188 189 2.168521 CTGCCGATCTAGGGTCTTTGAA 59.831 50.000 0.00 0.00 0.00 2.69
189 190 1.757118 CTGCCGATCTAGGGTCTTTGA 59.243 52.381 0.00 0.00 0.00 2.69
190 191 1.808133 GCTGCCGATCTAGGGTCTTTG 60.808 57.143 0.00 0.00 0.00 2.77
191 192 0.466124 GCTGCCGATCTAGGGTCTTT 59.534 55.000 0.00 0.00 0.00 2.52
192 193 1.403687 GGCTGCCGATCTAGGGTCTT 61.404 60.000 1.35 0.00 0.00 3.01
193 194 1.834822 GGCTGCCGATCTAGGGTCT 60.835 63.158 1.35 0.00 0.00 3.85
194 195 2.737830 GGCTGCCGATCTAGGGTC 59.262 66.667 1.35 0.00 0.00 4.46
201 202 4.603946 GGTACGGGGCTGCCGATC 62.604 72.222 13.40 3.94 34.52 3.69
248 249 1.201429 GGTCTCCAAGGAGCCAAGGA 61.201 60.000 18.62 0.00 41.71 3.36
252 253 2.224159 GGTGGTCTCCAAGGAGCCA 61.224 63.158 20.92 20.92 42.04 4.75
263 264 4.008933 GGCTGCTCGTGGTGGTCT 62.009 66.667 0.00 0.00 0.00 3.85
298 299 0.823356 AGCAGTTTGCCATGGACGTT 60.823 50.000 18.40 0.00 46.52 3.99
299 300 1.228245 AGCAGTTTGCCATGGACGT 60.228 52.632 18.40 0.00 46.52 4.34
371 372 3.730761 CAAGCAGCTGGACGTGGC 61.731 66.667 17.12 0.00 0.00 5.01
396 397 1.594833 GCATCAGTACCACGGGACA 59.405 57.895 0.23 0.00 0.00 4.02
398 399 1.305802 AGGCATCAGTACCACGGGA 60.306 57.895 0.00 0.00 0.00 5.14
400 401 1.815421 GCAGGCATCAGTACCACGG 60.815 63.158 0.00 0.00 0.00 4.94
423 424 1.913762 AGCAGAAGTAGCCCGTGGT 60.914 57.895 0.00 0.00 0.00 4.16
426 427 1.831652 AAGCAGCAGAAGTAGCCCGT 61.832 55.000 0.00 0.00 0.00 5.28
429 430 1.650825 GAGAAGCAGCAGAAGTAGCC 58.349 55.000 0.00 0.00 0.00 3.93
436 440 1.513158 GCCTACGAGAAGCAGCAGA 59.487 57.895 0.00 0.00 0.00 4.26
439 443 3.258290 GCGCCTACGAGAAGCAGC 61.258 66.667 0.00 0.00 43.93 5.25
518 531 2.125961 GCTACCTCCCGACGTCCAT 61.126 63.158 10.58 0.00 0.00 3.41
548 561 3.123620 CACAGGAGAAGCGGCAGC 61.124 66.667 0.00 0.00 45.58 5.25
549 562 1.739562 GACACAGGAGAAGCGGCAG 60.740 63.158 1.45 0.00 0.00 4.85
550 563 2.343758 GACACAGGAGAAGCGGCA 59.656 61.111 1.45 0.00 0.00 5.69
577 615 1.153628 GTGCCTGTTAGACGCCGAT 60.154 57.895 0.00 0.00 0.00 4.18
578 616 2.260434 GTGCCTGTTAGACGCCGA 59.740 61.111 0.00 0.00 0.00 5.54
586 624 0.112218 ATGCCCTTGTGTGCCTGTTA 59.888 50.000 0.00 0.00 0.00 2.41
591 631 0.527565 CAAGTATGCCCTTGTGTGCC 59.472 55.000 0.00 0.00 37.61 5.01
623 663 9.531158 TTGCAAATGATGGATATATTGTATGGA 57.469 29.630 0.00 0.00 0.00 3.41
676 716 6.558771 GCCTTAGTTTGCCATTTGATTTTT 57.441 33.333 0.00 0.00 0.00 1.94
687 727 0.240145 GAACACGGCCTTAGTTTGCC 59.760 55.000 0.00 0.00 44.41 4.52
688 728 0.110373 CGAACACGGCCTTAGTTTGC 60.110 55.000 0.00 0.00 0.00 3.68
689 729 0.515564 CCGAACACGGCCTTAGTTTG 59.484 55.000 0.00 6.63 40.29 2.93
690 730 2.922779 CCGAACACGGCCTTAGTTT 58.077 52.632 0.00 0.00 40.29 2.66
691 731 4.687464 CCGAACACGGCCTTAGTT 57.313 55.556 0.00 2.14 40.29 2.24
700 740 4.379243 AGAGGGCTGCCGAACACG 62.379 66.667 13.40 0.00 0.00 4.49
701 741 2.743928 CAGAGGGCTGCCGAACAC 60.744 66.667 13.40 0.00 34.95 3.32
719 759 4.140599 AGGAGCAGAGCCGCGAAG 62.141 66.667 8.23 0.00 36.85 3.79
720 760 4.441695 CAGGAGCAGAGCCGCGAA 62.442 66.667 8.23 0.00 36.85 4.70
722 762 4.441695 TTCAGGAGCAGAGCCGCG 62.442 66.667 0.00 0.00 36.85 6.46
723 763 2.511145 CTTCAGGAGCAGAGCCGC 60.511 66.667 0.00 0.00 0.00 6.53
732 772 2.186384 CTCTGGCCGCTTCAGGAG 59.814 66.667 0.00 0.00 33.36 3.69
733 773 4.087892 GCTCTGGCCGCTTCAGGA 62.088 66.667 0.00 0.00 33.36 3.86
752 792 2.175184 AATTGCACTGCACGTCGCTC 62.175 55.000 2.26 0.00 43.06 5.03
753 793 1.785041 AAATTGCACTGCACGTCGCT 61.785 50.000 2.26 0.00 43.06 4.93
754 794 0.934436 AAAATTGCACTGCACGTCGC 60.934 50.000 2.26 3.44 38.71 5.19
755 795 1.044725 GAAAATTGCACTGCACGTCG 58.955 50.000 2.26 0.00 38.71 5.12
756 796 2.046313 CAGAAAATTGCACTGCACGTC 58.954 47.619 2.26 0.00 38.71 4.34
757 797 1.675483 TCAGAAAATTGCACTGCACGT 59.325 42.857 2.26 0.00 38.71 4.49
758 798 2.404265 TCAGAAAATTGCACTGCACG 57.596 45.000 2.26 0.00 38.71 5.34
759 799 3.709987 ACTTCAGAAAATTGCACTGCAC 58.290 40.909 2.26 0.00 38.71 4.57
760 800 4.114073 CAACTTCAGAAAATTGCACTGCA 58.886 39.130 0.00 0.00 36.47 4.41
761 801 3.060070 GCAACTTCAGAAAATTGCACTGC 60.060 43.478 20.02 0.00 45.38 4.40
762 802 4.703899 GCAACTTCAGAAAATTGCACTG 57.296 40.909 20.02 0.00 45.38 3.66
766 806 5.961263 CAGTTTTGCAACTTCAGAAAATTGC 59.039 36.000 18.84 18.84 40.66 3.56
767 807 7.175410 GTCAGTTTTGCAACTTCAGAAAATTG 58.825 34.615 0.00 0.00 40.66 2.32
768 808 6.034898 CGTCAGTTTTGCAACTTCAGAAAATT 59.965 34.615 0.00 0.00 40.66 1.82
769 809 5.516339 CGTCAGTTTTGCAACTTCAGAAAAT 59.484 36.000 0.00 0.00 40.66 1.82
770 810 4.856487 CGTCAGTTTTGCAACTTCAGAAAA 59.144 37.500 0.00 0.00 40.66 2.29
771 811 4.155099 TCGTCAGTTTTGCAACTTCAGAAA 59.845 37.500 0.00 0.00 40.66 2.52
772 812 3.687212 TCGTCAGTTTTGCAACTTCAGAA 59.313 39.130 0.00 0.00 40.66 3.02
773 813 3.266636 TCGTCAGTTTTGCAACTTCAGA 58.733 40.909 0.00 0.00 40.66 3.27
774 814 3.673746 TCGTCAGTTTTGCAACTTCAG 57.326 42.857 0.00 0.00 40.66 3.02
775 815 4.597079 GAATCGTCAGTTTTGCAACTTCA 58.403 39.130 0.00 0.00 40.66 3.02
776 816 3.659444 CGAATCGTCAGTTTTGCAACTTC 59.341 43.478 0.00 0.00 40.66 3.01
777 817 3.064820 ACGAATCGTCAGTTTTGCAACTT 59.935 39.130 0.96 0.00 35.94 2.66
778 818 2.612212 ACGAATCGTCAGTTTTGCAACT 59.388 40.909 0.96 0.00 36.78 3.16
779 819 2.981875 ACGAATCGTCAGTTTTGCAAC 58.018 42.857 0.96 0.00 33.69 4.17
780 820 3.613563 GAACGAATCGTCAGTTTTGCAA 58.386 40.909 9.32 0.00 39.99 4.08
781 821 2.348125 CGAACGAATCGTCAGTTTTGCA 60.348 45.455 9.32 0.00 46.52 4.08
782 822 2.222624 CGAACGAATCGTCAGTTTTGC 58.777 47.619 9.32 0.00 46.52 3.68
793 833 1.849097 AATACGGGAGCGAACGAATC 58.151 50.000 0.00 0.00 0.00 2.52
794 834 3.655276 ATAATACGGGAGCGAACGAAT 57.345 42.857 0.00 0.00 0.00 3.34
795 835 3.888934 GTATAATACGGGAGCGAACGAA 58.111 45.455 0.00 0.00 0.00 3.85
796 836 3.542712 GTATAATACGGGAGCGAACGA 57.457 47.619 0.00 0.00 0.00 3.85
807 847 4.159857 GCTCTTCAGCTCCGTATAATACG 58.840 47.826 0.00 0.00 45.88 3.06
821 861 0.795085 CTTGTTCGGCAGCTCTTCAG 59.205 55.000 0.00 0.00 0.00 3.02
822 862 0.392706 TCTTGTTCGGCAGCTCTTCA 59.607 50.000 0.00 0.00 0.00 3.02
823 863 0.793250 GTCTTGTTCGGCAGCTCTTC 59.207 55.000 0.00 0.00 0.00 2.87
824 864 0.603975 GGTCTTGTTCGGCAGCTCTT 60.604 55.000 0.00 0.00 0.00 2.85
825 865 1.004440 GGTCTTGTTCGGCAGCTCT 60.004 57.895 0.00 0.00 0.00 4.09
826 866 0.246635 TAGGTCTTGTTCGGCAGCTC 59.753 55.000 0.00 0.00 0.00 4.09
827 867 0.685097 TTAGGTCTTGTTCGGCAGCT 59.315 50.000 0.00 0.00 0.00 4.24
828 868 1.464997 CTTTAGGTCTTGTTCGGCAGC 59.535 52.381 0.00 0.00 0.00 5.25
829 869 2.996621 CTCTTTAGGTCTTGTTCGGCAG 59.003 50.000 0.00 0.00 0.00 4.85
830 870 2.367567 ACTCTTTAGGTCTTGTTCGGCA 59.632 45.455 0.00 0.00 0.00 5.69
831 871 2.737252 CACTCTTTAGGTCTTGTTCGGC 59.263 50.000 0.00 0.00 0.00 5.54
832 872 3.326747 CCACTCTTTAGGTCTTGTTCGG 58.673 50.000 0.00 0.00 0.00 4.30
833 873 2.737252 GCCACTCTTTAGGTCTTGTTCG 59.263 50.000 0.00 0.00 0.00 3.95
834 874 3.740115 TGCCACTCTTTAGGTCTTGTTC 58.260 45.455 0.00 0.00 0.00 3.18
835 875 3.857157 TGCCACTCTTTAGGTCTTGTT 57.143 42.857 0.00 0.00 0.00 2.83
836 876 3.857157 TTGCCACTCTTTAGGTCTTGT 57.143 42.857 0.00 0.00 0.00 3.16
837 877 4.821805 TCTTTTGCCACTCTTTAGGTCTTG 59.178 41.667 0.00 0.00 0.00 3.02
838 878 5.048846 TCTTTTGCCACTCTTTAGGTCTT 57.951 39.130 0.00 0.00 0.00 3.01
839 879 4.706842 TCTTTTGCCACTCTTTAGGTCT 57.293 40.909 0.00 0.00 0.00 3.85
840 880 5.003804 TGATCTTTTGCCACTCTTTAGGTC 58.996 41.667 0.00 0.00 0.00 3.85
841 881 4.985538 TGATCTTTTGCCACTCTTTAGGT 58.014 39.130 0.00 0.00 0.00 3.08
842 882 6.521151 AATGATCTTTTGCCACTCTTTAGG 57.479 37.500 0.00 0.00 0.00 2.69
843 883 8.514594 TGTAAATGATCTTTTGCCACTCTTTAG 58.485 33.333 14.99 0.00 0.00 1.85
844 884 8.402798 TGTAAATGATCTTTTGCCACTCTTTA 57.597 30.769 14.99 0.00 0.00 1.85
845 885 7.288810 TGTAAATGATCTTTTGCCACTCTTT 57.711 32.000 14.99 0.00 0.00 2.52
846 886 6.899393 TGTAAATGATCTTTTGCCACTCTT 57.101 33.333 14.99 0.00 0.00 2.85
847 887 6.899393 TTGTAAATGATCTTTTGCCACTCT 57.101 33.333 14.99 0.00 0.00 3.24
848 888 7.542025 AGATTGTAAATGATCTTTTGCCACTC 58.458 34.615 14.99 13.55 0.00 3.51
849 889 7.472334 AGATTGTAAATGATCTTTTGCCACT 57.528 32.000 14.99 10.24 0.00 4.00
850 890 9.294030 CTTAGATTGTAAATGATCTTTTGCCAC 57.706 33.333 14.99 7.44 0.00 5.01
851 891 7.975616 GCTTAGATTGTAAATGATCTTTTGCCA 59.024 33.333 14.99 7.43 0.00 4.92
852 892 7.975616 TGCTTAGATTGTAAATGATCTTTTGCC 59.024 33.333 14.99 7.45 0.00 4.52
853 893 8.915871 TGCTTAGATTGTAAATGATCTTTTGC 57.084 30.769 14.99 14.02 0.00 3.68
856 896 9.453572 TCACTGCTTAGATTGTAAATGATCTTT 57.546 29.630 0.00 0.00 0.00 2.52
857 897 8.887717 GTCACTGCTTAGATTGTAAATGATCTT 58.112 33.333 0.00 0.00 0.00 2.40
858 898 8.043113 TGTCACTGCTTAGATTGTAAATGATCT 58.957 33.333 0.00 0.00 0.00 2.75
859 899 8.201554 TGTCACTGCTTAGATTGTAAATGATC 57.798 34.615 0.00 0.00 0.00 2.92
860 900 8.565896 TTGTCACTGCTTAGATTGTAAATGAT 57.434 30.769 0.00 0.00 0.00 2.45
861 901 7.977789 TTGTCACTGCTTAGATTGTAAATGA 57.022 32.000 0.00 0.00 0.00 2.57
862 902 9.630098 AATTTGTCACTGCTTAGATTGTAAATG 57.370 29.630 0.00 0.00 0.00 2.32
863 903 9.630098 CAATTTGTCACTGCTTAGATTGTAAAT 57.370 29.630 0.00 0.00 0.00 1.40
864 904 8.629158 ACAATTTGTCACTGCTTAGATTGTAAA 58.371 29.630 0.00 0.00 35.44 2.01
865 905 8.165239 ACAATTTGTCACTGCTTAGATTGTAA 57.835 30.769 0.00 0.00 35.44 2.41
866 906 7.744087 ACAATTTGTCACTGCTTAGATTGTA 57.256 32.000 0.00 0.00 35.44 2.41
867 907 6.639632 ACAATTTGTCACTGCTTAGATTGT 57.360 33.333 0.00 0.00 33.17 2.71
868 908 9.462174 TTTAACAATTTGTCACTGCTTAGATTG 57.538 29.630 1.83 0.00 0.00 2.67
869 909 9.683069 CTTTAACAATTTGTCACTGCTTAGATT 57.317 29.630 1.83 0.00 0.00 2.40
870 910 8.850156 ACTTTAACAATTTGTCACTGCTTAGAT 58.150 29.630 1.83 0.00 0.00 1.98
871 911 8.220755 ACTTTAACAATTTGTCACTGCTTAGA 57.779 30.769 1.83 0.00 0.00 2.10
872 912 7.591426 GGACTTTAACAATTTGTCACTGCTTAG 59.409 37.037 1.83 0.00 0.00 2.18
873 913 7.067615 TGGACTTTAACAATTTGTCACTGCTTA 59.932 33.333 1.83 0.00 0.00 3.09
874 914 6.127479 TGGACTTTAACAATTTGTCACTGCTT 60.127 34.615 1.83 0.00 0.00 3.91
875 915 5.359576 TGGACTTTAACAATTTGTCACTGCT 59.640 36.000 1.83 0.00 0.00 4.24
876 916 5.587289 TGGACTTTAACAATTTGTCACTGC 58.413 37.500 1.83 0.00 0.00 4.40
877 917 7.759433 ACTTTGGACTTTAACAATTTGTCACTG 59.241 33.333 1.83 0.00 0.00 3.66
878 918 7.836842 ACTTTGGACTTTAACAATTTGTCACT 58.163 30.769 1.83 0.00 0.00 3.41
879 919 9.575783 TTACTTTGGACTTTAACAATTTGTCAC 57.424 29.630 1.83 0.00 0.00 3.67
880 920 9.796120 CTTACTTTGGACTTTAACAATTTGTCA 57.204 29.630 1.83 0.00 0.00 3.58
881 921 9.797556 ACTTACTTTGGACTTTAACAATTTGTC 57.202 29.630 1.83 0.00 0.00 3.18
886 926 9.063615 CCACTACTTACTTTGGACTTTAACAAT 57.936 33.333 0.00 0.00 0.00 2.71
887 927 7.012610 GCCACTACTTACTTTGGACTTTAACAA 59.987 37.037 0.00 0.00 0.00 2.83
888 928 6.484308 GCCACTACTTACTTTGGACTTTAACA 59.516 38.462 0.00 0.00 0.00 2.41
889 929 6.709397 AGCCACTACTTACTTTGGACTTTAAC 59.291 38.462 0.00 0.00 0.00 2.01
890 930 6.708949 CAGCCACTACTTACTTTGGACTTTAA 59.291 38.462 0.00 0.00 0.00 1.52
891 931 6.042322 TCAGCCACTACTTACTTTGGACTTTA 59.958 38.462 0.00 0.00 0.00 1.85
892 932 5.063880 CAGCCACTACTTACTTTGGACTTT 58.936 41.667 0.00 0.00 0.00 2.66
893 933 4.347000 TCAGCCACTACTTACTTTGGACTT 59.653 41.667 0.00 0.00 0.00 3.01
894 934 3.901844 TCAGCCACTACTTACTTTGGACT 59.098 43.478 0.00 0.00 0.00 3.85
895 935 4.267349 TCAGCCACTACTTACTTTGGAC 57.733 45.455 0.00 0.00 0.00 4.02
896 936 4.967084 TTCAGCCACTACTTACTTTGGA 57.033 40.909 0.00 0.00 0.00 3.53
897 937 6.206634 TGATTTTCAGCCACTACTTACTTTGG 59.793 38.462 0.00 0.00 0.00 3.28
898 938 7.202016 TGATTTTCAGCCACTACTTACTTTG 57.798 36.000 0.00 0.00 0.00 2.77
899 939 7.817418 TTGATTTTCAGCCACTACTTACTTT 57.183 32.000 0.00 0.00 0.00 2.66
900 940 7.817418 TTTGATTTTCAGCCACTACTTACTT 57.183 32.000 0.00 0.00 0.00 2.24
901 941 7.148407 CGATTTGATTTTCAGCCACTACTTACT 60.148 37.037 0.00 0.00 0.00 2.24
902 942 6.961554 CGATTTGATTTTCAGCCACTACTTAC 59.038 38.462 0.00 0.00 0.00 2.34
903 943 6.403200 GCGATTTGATTTTCAGCCACTACTTA 60.403 38.462 0.00 0.00 0.00 2.24
904 944 5.619981 GCGATTTGATTTTCAGCCACTACTT 60.620 40.000 0.00 0.00 0.00 2.24
905 945 4.142600 GCGATTTGATTTTCAGCCACTACT 60.143 41.667 0.00 0.00 0.00 2.57
906 946 4.098416 GCGATTTGATTTTCAGCCACTAC 58.902 43.478 0.00 0.00 0.00 2.73
907 947 3.128589 GGCGATTTGATTTTCAGCCACTA 59.871 43.478 0.00 0.00 42.37 2.74
908 948 2.094545 GGCGATTTGATTTTCAGCCACT 60.095 45.455 0.00 0.00 42.37 4.00
909 949 2.262211 GGCGATTTGATTTTCAGCCAC 58.738 47.619 0.00 0.00 42.37 5.01
910 950 1.204467 GGGCGATTTGATTTTCAGCCA 59.796 47.619 5.91 0.00 44.40 4.75
911 951 1.471501 GGGGCGATTTGATTTTCAGCC 60.472 52.381 0.00 0.00 42.10 4.85
912 952 1.798813 CGGGGCGATTTGATTTTCAGC 60.799 52.381 0.00 0.00 0.00 4.26
913 953 1.742831 TCGGGGCGATTTGATTTTCAG 59.257 47.619 0.00 0.00 0.00 3.02
914 954 1.827681 TCGGGGCGATTTGATTTTCA 58.172 45.000 0.00 0.00 0.00 2.69
915 955 2.931512 TTCGGGGCGATTTGATTTTC 57.068 45.000 0.00 0.00 35.23 2.29
916 956 2.823154 TCTTTCGGGGCGATTTGATTTT 59.177 40.909 0.00 0.00 35.23 1.82
917 957 2.442413 TCTTTCGGGGCGATTTGATTT 58.558 42.857 0.00 0.00 35.23 2.17
918 958 2.122783 TCTTTCGGGGCGATTTGATT 57.877 45.000 0.00 0.00 35.23 2.57
919 959 1.743394 GTTCTTTCGGGGCGATTTGAT 59.257 47.619 0.00 0.00 35.23 2.57
920 960 1.161843 GTTCTTTCGGGGCGATTTGA 58.838 50.000 0.00 0.00 35.23 2.69
921 961 0.878416 TGTTCTTTCGGGGCGATTTG 59.122 50.000 0.00 0.00 35.23 2.32
922 962 1.743394 GATGTTCTTTCGGGGCGATTT 59.257 47.619 0.00 0.00 35.23 2.17
923 963 1.339631 TGATGTTCTTTCGGGGCGATT 60.340 47.619 0.00 0.00 35.23 3.34
924 964 0.251916 TGATGTTCTTTCGGGGCGAT 59.748 50.000 0.00 0.00 35.23 4.58
925 965 0.391130 CTGATGTTCTTTCGGGGCGA 60.391 55.000 0.00 0.00 0.00 5.54
926 966 0.391130 TCTGATGTTCTTTCGGGGCG 60.391 55.000 0.00 0.00 0.00 6.13
927 967 2.044123 ATCTGATGTTCTTTCGGGGC 57.956 50.000 0.00 0.00 0.00 5.80
932 972 6.913170 TGCTTACCAAATCTGATGTTCTTTC 58.087 36.000 0.00 0.00 0.00 2.62
964 1004 1.270147 ACGGAAGAAAGGGACAAGTCG 60.270 52.381 0.00 0.00 0.00 4.18
1242 1282 0.908198 AGGAGAGAATGGACAGGTGC 59.092 55.000 0.00 0.00 0.00 5.01
1248 1288 0.030101 CGCGAGAGGAGAGAATGGAC 59.970 60.000 0.00 0.00 0.00 4.02
1458 1498 1.614241 GGAGGCCGTTTAGGAGCTGA 61.614 60.000 0.00 0.00 45.00 4.26
1507 1547 6.226787 TCTAAAGAAAGCAGAAGAAGACCAG 58.773 40.000 0.00 0.00 0.00 4.00
1520 1560 6.382608 GGACCAAGTCATTTCTAAAGAAAGC 58.617 40.000 10.64 4.47 45.87 3.51
1560 3113 4.277672 ACTGATCATTGCTGCAATATGGTC 59.722 41.667 25.85 21.43 32.35 4.02
1578 3131 5.410439 AGCGTACAAAAATTTACCGACTGAT 59.590 36.000 0.00 0.00 0.00 2.90
1623 3176 0.034756 TCACATCCAACACCACCTCG 59.965 55.000 0.00 0.00 0.00 4.63
1688 3241 3.987404 CCAAGTCTTTGGCTCCCG 58.013 61.111 0.00 0.00 46.84 5.14
1882 3435 0.521735 GCTGGTTTGATTCCGTGGTC 59.478 55.000 0.00 0.00 0.00 4.02
1966 3519 0.111061 TCAACAGCCAGCAGGTCATT 59.889 50.000 0.00 0.00 37.19 2.57
2065 3619 4.136796 CCAATAATCGGCTGGATCTTTCA 58.863 43.478 0.00 0.00 33.02 2.69
2084 3638 8.099364 GCTATCTGCTTACAATTTATAGCCAA 57.901 34.615 0.00 0.00 36.11 4.52
2170 3725 2.435805 GGACTCACCTGCTTGGATATGA 59.564 50.000 3.40 0.00 39.71 2.15
2354 3909 6.698380 GTTCAGGAACTACTGGACAAGATAA 58.302 40.000 4.95 0.00 44.70 1.75
2394 3950 5.458041 AAGCTGCAATGTCATTAAACAGT 57.542 34.783 17.23 7.43 31.50 3.55
2487 4043 7.631377 GCCTTGCAACCATCTAAAAGTTATCAT 60.631 37.037 0.00 0.00 0.00 2.45
2534 4090 6.475504 ACTGTTCACATGGATCTTACAATGA 58.524 36.000 0.00 0.00 0.00 2.57
2542 4098 4.202503 ACTGGAAACTGTTCACATGGATCT 60.203 41.667 0.00 0.00 39.81 2.75
2598 4154 5.751243 ATATCACAATTTGGCGAAGGTAC 57.249 39.130 0.78 0.00 0.00 3.34
2606 4162 8.962884 AAATAAAGGGAATATCACAATTTGGC 57.037 30.769 0.78 0.00 0.00 4.52
2675 4231 7.843490 TGGTAGATGTTGTAAGTCAATTAGC 57.157 36.000 0.00 0.00 38.38 3.09
2685 4241 7.125204 AGCAGTTACCTATGGTAGATGTTGTAA 59.875 37.037 10.09 0.00 39.52 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.