Multiple sequence alignment - TraesCS3A01G283400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G283400 chr3A 100.000 3823 0 0 1 3823 511756678 511752856 0.000000e+00 7060.0
1 TraesCS3A01G283400 chr3A 88.571 175 20 0 1074 1248 502167845 502167671 2.990000e-51 213.0
2 TraesCS3A01G283400 chr3A 84.343 198 31 0 2122 2319 502166722 502166525 1.080000e-45 195.0
3 TraesCS3A01G283400 chr3B 90.975 2061 95 41 1786 3808 508710025 508708018 0.000000e+00 2691.0
4 TraesCS3A01G283400 chr3B 87.831 1134 50 28 674 1762 508711178 508710088 0.000000e+00 1249.0
5 TraesCS3A01G283400 chr3B 89.080 174 19 0 1075 1248 492613158 492612985 2.310000e-52 217.0
6 TraesCS3A01G283400 chr3B 85.047 214 18 10 158 371 508713262 508713063 5.010000e-49 206.0
7 TraesCS3A01G283400 chr3B 82.456 228 35 5 2122 2347 492612055 492611831 1.080000e-45 195.0
8 TraesCS3A01G283400 chr3B 86.585 164 12 6 1 161 508713459 508713303 5.080000e-39 172.0
9 TraesCS3A01G283400 chr3B 90.110 91 6 1 379 466 508711325 508711235 8.680000e-22 115.0
10 TraesCS3A01G283400 chr3D 90.537 2050 85 59 1786 3809 391599553 391597587 0.000000e+00 2610.0
11 TraesCS3A01G283400 chr3D 88.645 1048 47 30 674 1682 391600874 391599860 0.000000e+00 1210.0
12 TraesCS3A01G283400 chr3D 86.364 330 18 11 156 466 391601264 391600943 6.120000e-88 335.0
13 TraesCS3A01G283400 chr3D 89.080 174 19 0 1075 1248 378036174 378036001 2.310000e-52 217.0
14 TraesCS3A01G283400 chr3D 81.857 237 38 5 2122 2356 378035092 378034859 1.080000e-45 195.0
15 TraesCS3A01G283400 chr3D 90.511 137 8 5 29 161 391601438 391601303 3.930000e-40 176.0
16 TraesCS3A01G283400 chr3D 82.166 157 18 7 1081 1229 44822921 44823075 4.010000e-25 126.0
17 TraesCS3A01G283400 chr3D 84.112 107 12 5 2195 2298 44823298 44823402 8.740000e-17 99.0
18 TraesCS3A01G283400 chr1A 78.541 932 156 36 1874 2777 529664649 529665564 1.190000e-159 573.0
19 TraesCS3A01G283400 chr1A 85.200 250 23 13 1004 1248 529664272 529664512 1.060000e-60 244.0
20 TraesCS3A01G283400 chr1B 77.996 918 162 33 1874 2777 582544257 582545148 1.210000e-149 540.0
21 TraesCS3A01G283400 chr1B 85.849 212 26 4 1039 1248 582543962 582544171 4.970000e-54 222.0
22 TraesCS3A01G283400 chr1D 78.523 731 136 19 2096 2814 431426552 431427273 9.680000e-126 460.0
23 TraesCS3A01G283400 chr1D 85.849 212 26 4 1039 1248 431425991 431426200 4.970000e-54 222.0
24 TraesCS3A01G283400 chr1D 87.407 135 13 4 1874 2006 431426320 431426452 6.610000e-33 152.0
25 TraesCS3A01G283400 chr7D 89.062 64 6 1 481 544 437643681 437643743 1.140000e-10 78.7
26 TraesCS3A01G283400 chr5D 85.484 62 6 3 484 544 433340869 433340810 1.150000e-05 62.1
27 TraesCS3A01G283400 chr5D 100.000 28 0 0 484 511 394008182 394008155 7.000000e-03 52.8
28 TraesCS3A01G283400 chr2D 84.615 65 7 3 481 544 423208528 423208590 1.150000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G283400 chr3A 511752856 511756678 3822 True 7060.00 7060 100.000000 1 3823 1 chr3A.!!$R1 3822
1 TraesCS3A01G283400 chr3A 502166525 502167845 1320 True 204.00 213 86.457000 1074 2319 2 chr3A.!!$R2 1245
2 TraesCS3A01G283400 chr3B 508708018 508713459 5441 True 886.60 2691 88.109600 1 3808 5 chr3B.!!$R2 3807
3 TraesCS3A01G283400 chr3B 492611831 492613158 1327 True 206.00 217 85.768000 1075 2347 2 chr3B.!!$R1 1272
4 TraesCS3A01G283400 chr3D 391597587 391601438 3851 True 1082.75 2610 89.014250 29 3809 4 chr3D.!!$R2 3780
5 TraesCS3A01G283400 chr3D 378034859 378036174 1315 True 206.00 217 85.468500 1075 2356 2 chr3D.!!$R1 1281
6 TraesCS3A01G283400 chr1A 529664272 529665564 1292 False 408.50 573 81.870500 1004 2777 2 chr1A.!!$F1 1773
7 TraesCS3A01G283400 chr1B 582543962 582545148 1186 False 381.00 540 81.922500 1039 2777 2 chr1B.!!$F1 1738
8 TraesCS3A01G283400 chr1D 431425991 431427273 1282 False 278.00 460 83.926333 1039 2814 3 chr1D.!!$F1 1775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
986 2829 0.033405 TCACCGGAAGCTAGCTAGGT 60.033 55.0 25.04 25.04 35.17 3.08 F
2048 4429 0.103755 AGCTCACGACGATCATGCAT 59.896 50.0 0.00 0.00 0.00 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2466 4874 0.543277 TTGAAGATCTGGATGGCGCT 59.457 50.000 7.64 0.0 0.0 5.92 R
3670 6122 1.267261 GCCTACATCTACGAGACGCAT 59.733 52.381 0.00 0.0 0.0 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.666190 CAGCACAGACCCACACCG 60.666 66.667 0.00 0.00 0.00 4.94
79 80 2.686816 GCACCGAATCCAACCACCG 61.687 63.158 0.00 0.00 0.00 4.94
81 82 3.131478 CCGAATCCAACCACCGGC 61.131 66.667 0.00 0.00 33.47 6.13
82 83 3.131478 CGAATCCAACCACCGGCC 61.131 66.667 0.00 0.00 0.00 6.13
141 149 0.109132 GCAATGCAAGCACCCTACAC 60.109 55.000 0.00 0.00 0.00 2.90
142 150 1.538047 CAATGCAAGCACCCTACACT 58.462 50.000 0.00 0.00 0.00 3.55
143 151 2.710377 CAATGCAAGCACCCTACACTA 58.290 47.619 0.00 0.00 0.00 2.74
144 152 2.403252 ATGCAAGCACCCTACACTAC 57.597 50.000 0.00 0.00 0.00 2.73
145 153 1.052617 TGCAAGCACCCTACACTACA 58.947 50.000 0.00 0.00 0.00 2.74
218 275 7.074653 AGCCCGGAGAATTAAATGAACTATA 57.925 36.000 0.73 0.00 0.00 1.31
219 276 7.162082 AGCCCGGAGAATTAAATGAACTATAG 58.838 38.462 0.73 0.00 0.00 1.31
282 339 1.960689 ACCGCAAGCAAACCAGTAATT 59.039 42.857 0.00 0.00 0.00 1.40
286 343 4.541779 CGCAAGCAAACCAGTAATTACAA 58.458 39.130 17.65 0.00 0.00 2.41
290 347 4.981794 AGCAAACCAGTAATTACAATCGC 58.018 39.130 17.65 11.33 0.00 4.58
315 383 2.627515 AGACACACACTTGACAGCAT 57.372 45.000 0.00 0.00 0.00 3.79
316 384 2.487934 AGACACACACTTGACAGCATC 58.512 47.619 0.00 0.00 0.00 3.91
317 385 1.193203 GACACACACTTGACAGCATCG 59.807 52.381 0.00 0.00 0.00 3.84
318 386 0.110509 CACACACTTGACAGCATCGC 60.111 55.000 0.00 0.00 0.00 4.58
319 387 1.131218 CACACTTGACAGCATCGCG 59.869 57.895 0.00 0.00 0.00 5.87
320 388 2.097160 CACTTGACAGCATCGCGC 59.903 61.111 0.00 0.00 42.91 6.86
372 446 1.200020 GACAAGGCCATGTTACTGTGC 59.800 52.381 15.98 0.00 32.57 4.57
377 451 3.545703 AGGCCATGTTACTGTGCTATTC 58.454 45.455 5.01 0.00 0.00 1.75
382 2180 6.039270 GGCCATGTTACTGTGCTATTCAATTA 59.961 38.462 0.00 0.00 0.00 1.40
414 2215 2.556287 CGGTTCTGAAAGCCGTGC 59.444 61.111 10.35 0.00 40.53 5.34
454 2258 2.907179 CGGCCCCTCTTCCCAGTTT 61.907 63.158 0.00 0.00 0.00 2.66
456 2260 0.702316 GGCCCCTCTTCCCAGTTTAA 59.298 55.000 0.00 0.00 0.00 1.52
462 2266 5.810034 GCCCCTCTTCCCAGTTTAATAACTT 60.810 44.000 0.00 0.00 41.85 2.66
463 2267 6.579647 GCCCCTCTTCCCAGTTTAATAACTTA 60.580 42.308 0.00 0.00 41.85 2.24
464 2268 7.407729 CCCCTCTTCCCAGTTTAATAACTTAA 58.592 38.462 0.00 0.00 41.85 1.85
465 2269 7.556635 CCCCTCTTCCCAGTTTAATAACTTAAG 59.443 40.741 0.00 0.00 41.85 1.85
466 2270 7.556635 CCCTCTTCCCAGTTTAATAACTTAAGG 59.443 40.741 7.53 0.00 41.85 2.69
467 2271 7.067129 CCTCTTCCCAGTTTAATAACTTAAGGC 59.933 40.741 7.53 0.00 41.85 4.35
468 2272 6.888088 TCTTCCCAGTTTAATAACTTAAGGCC 59.112 38.462 7.53 0.00 41.85 5.19
469 2273 6.397217 TCCCAGTTTAATAACTTAAGGCCT 57.603 37.500 0.00 0.00 41.85 5.19
470 2274 6.796648 TCCCAGTTTAATAACTTAAGGCCTT 58.203 36.000 24.18 24.18 41.85 4.35
471 2275 6.661805 TCCCAGTTTAATAACTTAAGGCCTTG 59.338 38.462 28.77 14.84 41.85 3.61
472 2276 6.436218 CCCAGTTTAATAACTTAAGGCCTTGT 59.564 38.462 28.77 15.56 41.85 3.16
473 2277 7.039293 CCCAGTTTAATAACTTAAGGCCTTGTT 60.039 37.037 28.77 24.35 41.85 2.83
474 2278 8.027189 CCAGTTTAATAACTTAAGGCCTTGTTC 58.973 37.037 28.77 10.75 41.85 3.18
475 2279 8.573035 CAGTTTAATAACTTAAGGCCTTGTTCA 58.427 33.333 28.77 4.66 41.85 3.18
476 2280 8.793592 AGTTTAATAACTTAAGGCCTTGTTCAG 58.206 33.333 28.77 18.93 41.85 3.02
477 2281 8.573885 GTTTAATAACTTAAGGCCTTGTTCAGT 58.426 33.333 28.77 19.55 0.00 3.41
478 2282 9.796180 TTTAATAACTTAAGGCCTTGTTCAGTA 57.204 29.630 28.77 13.17 0.00 2.74
479 2283 9.796180 TTAATAACTTAAGGCCTTGTTCAGTAA 57.204 29.630 28.77 17.32 0.00 2.24
480 2284 8.879427 AATAACTTAAGGCCTTGTTCAGTAAT 57.121 30.769 28.77 10.96 0.00 1.89
481 2285 6.819397 AACTTAAGGCCTTGTTCAGTAATC 57.181 37.500 28.77 0.00 0.00 1.75
482 2286 5.876357 ACTTAAGGCCTTGTTCAGTAATCA 58.124 37.500 28.77 0.00 0.00 2.57
483 2287 5.705905 ACTTAAGGCCTTGTTCAGTAATCAC 59.294 40.000 28.77 0.00 0.00 3.06
484 2288 2.699954 AGGCCTTGTTCAGTAATCACG 58.300 47.619 0.00 0.00 0.00 4.35
485 2289 1.737793 GGCCTTGTTCAGTAATCACGG 59.262 52.381 0.00 0.00 0.00 4.94
486 2290 2.614481 GGCCTTGTTCAGTAATCACGGA 60.614 50.000 0.00 0.00 0.00 4.69
487 2291 3.071479 GCCTTGTTCAGTAATCACGGAA 58.929 45.455 0.00 0.00 36.65 4.30
488 2292 3.689649 GCCTTGTTCAGTAATCACGGAAT 59.310 43.478 0.00 0.00 40.30 3.01
489 2293 4.201822 GCCTTGTTCAGTAATCACGGAATC 60.202 45.833 0.00 0.00 40.30 2.52
490 2294 5.178797 CCTTGTTCAGTAATCACGGAATCT 58.821 41.667 0.00 0.00 40.30 2.40
491 2295 5.063944 CCTTGTTCAGTAATCACGGAATCTG 59.936 44.000 0.00 0.00 40.30 2.90
492 2296 3.932710 TGTTCAGTAATCACGGAATCTGC 59.067 43.478 0.00 0.00 40.30 4.26
493 2297 2.809446 TCAGTAATCACGGAATCTGCG 58.191 47.619 0.00 0.00 37.19 5.18
494 2298 1.860950 CAGTAATCACGGAATCTGCGG 59.139 52.381 0.00 0.00 34.75 5.69
495 2299 1.754803 AGTAATCACGGAATCTGCGGA 59.245 47.619 0.00 0.00 34.75 5.54
496 2300 2.128035 GTAATCACGGAATCTGCGGAG 58.872 52.381 0.00 0.00 34.75 4.63
515 2319 3.399879 CGGGGAAACTGCAATTTCG 57.600 52.632 13.92 0.39 39.13 3.46
516 2320 0.732538 CGGGGAAACTGCAATTTCGC 60.733 55.000 24.39 24.39 45.81 4.70
517 2321 0.603065 GGGGAAACTGCAATTTCGCT 59.397 50.000 28.87 0.00 45.81 4.93
518 2322 1.816224 GGGGAAACTGCAATTTCGCTA 59.184 47.619 28.87 0.00 45.81 4.26
519 2323 2.427095 GGGGAAACTGCAATTTCGCTAT 59.573 45.455 28.87 0.00 45.81 2.97
520 2324 3.119137 GGGGAAACTGCAATTTCGCTATT 60.119 43.478 28.87 0.00 45.81 1.73
521 2325 4.494484 GGGAAACTGCAATTTCGCTATTT 58.506 39.130 24.91 0.00 44.15 1.40
522 2326 4.929211 GGGAAACTGCAATTTCGCTATTTT 59.071 37.500 24.91 0.00 44.15 1.82
523 2327 5.163963 GGGAAACTGCAATTTCGCTATTTTG 60.164 40.000 24.91 0.00 44.15 2.44
524 2328 5.633182 GGAAACTGCAATTTCGCTATTTTGA 59.367 36.000 13.92 0.00 39.13 2.69
525 2329 6.183360 GGAAACTGCAATTTCGCTATTTTGAG 60.183 38.462 13.92 0.00 39.13 3.02
526 2330 5.627499 ACTGCAATTTCGCTATTTTGAGA 57.373 34.783 0.00 0.00 0.00 3.27
527 2331 6.199937 ACTGCAATTTCGCTATTTTGAGAT 57.800 33.333 0.00 0.00 0.00 2.75
528 2332 6.032094 ACTGCAATTTCGCTATTTTGAGATG 58.968 36.000 0.00 0.00 0.00 2.90
529 2333 4.799949 TGCAATTTCGCTATTTTGAGATGC 59.200 37.500 0.00 0.00 0.00 3.91
530 2334 4.799949 GCAATTTCGCTATTTTGAGATGCA 59.200 37.500 0.00 0.00 0.00 3.96
531 2335 5.051907 GCAATTTCGCTATTTTGAGATGCAG 60.052 40.000 0.00 0.00 0.00 4.41
532 2336 3.680642 TTCGCTATTTTGAGATGCAGC 57.319 42.857 0.00 0.00 0.00 5.25
533 2337 2.910199 TCGCTATTTTGAGATGCAGCT 58.090 42.857 2.90 2.90 0.00 4.24
534 2338 2.868583 TCGCTATTTTGAGATGCAGCTC 59.131 45.455 24.85 24.85 35.46 4.09
535 2339 2.032204 CGCTATTTTGAGATGCAGCTCC 60.032 50.000 27.97 11.52 33.95 4.70
536 2340 2.032204 GCTATTTTGAGATGCAGCTCCG 60.032 50.000 27.97 10.92 33.95 4.63
537 2341 0.737219 ATTTTGAGATGCAGCTCCGC 59.263 50.000 27.97 5.83 33.95 5.54
538 2342 1.308069 TTTTGAGATGCAGCTCCGCC 61.308 55.000 27.97 5.43 33.95 6.13
539 2343 3.687321 TTGAGATGCAGCTCCGCCC 62.687 63.158 27.97 5.03 33.95 6.13
540 2344 4.166888 GAGATGCAGCTCCGCCCA 62.167 66.667 21.37 0.00 0.00 5.36
541 2345 3.687321 GAGATGCAGCTCCGCCCAA 62.687 63.158 21.37 0.00 0.00 4.12
542 2346 3.512516 GATGCAGCTCCGCCCAAC 61.513 66.667 0.00 0.00 0.00 3.77
543 2347 3.984193 GATGCAGCTCCGCCCAACT 62.984 63.158 0.00 0.00 0.00 3.16
546 2350 2.281761 CAGCTCCGCCCAACTGTT 60.282 61.111 0.00 0.00 0.00 3.16
547 2351 2.281761 AGCTCCGCCCAACTGTTG 60.282 61.111 13.50 13.50 0.00 3.33
548 2352 2.594592 GCTCCGCCCAACTGTTGT 60.595 61.111 18.38 0.00 0.00 3.32
549 2353 2.908073 GCTCCGCCCAACTGTTGTG 61.908 63.158 18.38 9.13 0.00 3.33
550 2354 2.203280 TCCGCCCAACTGTTGTGG 60.203 61.111 18.38 18.26 0.00 4.17
551 2355 2.203280 CCGCCCAACTGTTGTGGA 60.203 61.111 23.57 0.00 0.00 4.02
552 2356 2.260869 CCGCCCAACTGTTGTGGAG 61.261 63.158 23.57 20.73 0.00 3.86
553 2357 2.908073 CGCCCAACTGTTGTGGAGC 61.908 63.158 23.57 17.02 0.00 4.70
554 2358 2.908073 GCCCAACTGTTGTGGAGCG 61.908 63.158 23.57 8.23 0.00 5.03
555 2359 2.260869 CCCAACTGTTGTGGAGCGG 61.261 63.158 18.38 8.10 0.00 5.52
556 2360 1.227823 CCAACTGTTGTGGAGCGGA 60.228 57.895 18.38 0.00 0.00 5.54
557 2361 1.507141 CCAACTGTTGTGGAGCGGAC 61.507 60.000 18.38 0.00 0.00 4.79
558 2362 1.227853 AACTGTTGTGGAGCGGACC 60.228 57.895 0.00 0.00 0.00 4.46
559 2363 2.738521 CTGTTGTGGAGCGGACCG 60.739 66.667 10.29 10.29 0.00 4.79
560 2364 3.220999 CTGTTGTGGAGCGGACCGA 62.221 63.158 20.50 0.00 0.00 4.69
561 2365 2.264794 GTTGTGGAGCGGACCGAT 59.735 61.111 20.50 12.80 0.00 4.18
562 2366 1.252215 TGTTGTGGAGCGGACCGATA 61.252 55.000 20.50 0.00 0.00 2.92
563 2367 0.804933 GTTGTGGAGCGGACCGATAC 60.805 60.000 20.50 14.17 0.00 2.24
564 2368 1.952102 TTGTGGAGCGGACCGATACC 61.952 60.000 20.50 15.32 0.00 2.73
571 2375 4.821177 GGACCGATACCGAACACC 57.179 61.111 0.00 0.00 38.22 4.16
572 2376 1.226773 GGACCGATACCGAACACCG 60.227 63.158 0.00 0.00 38.22 4.94
573 2377 1.875364 GACCGATACCGAACACCGC 60.875 63.158 0.00 0.00 38.22 5.68
574 2378 2.584143 CCGATACCGAACACCGCC 60.584 66.667 0.00 0.00 38.22 6.13
608 2412 3.542369 CGATCGATCGGCACATGG 58.458 61.111 34.54 8.91 45.93 3.66
609 2413 2.661566 CGATCGATCGGCACATGGC 61.662 63.158 34.54 1.69 45.93 4.40
632 2445 0.916086 TGCCAGTACTGTATTGGGGG 59.084 55.000 25.04 4.74 36.20 5.40
635 2448 2.709397 GCCAGTACTGTATTGGGGGTAT 59.291 50.000 25.04 0.00 36.20 2.73
636 2449 3.137728 GCCAGTACTGTATTGGGGGTATT 59.862 47.826 25.04 0.00 36.20 1.89
638 2451 4.658901 CCAGTACTGTATTGGGGGTATTCT 59.341 45.833 21.18 0.00 32.40 2.40
639 2452 5.842328 CCAGTACTGTATTGGGGGTATTCTA 59.158 44.000 21.18 0.00 32.40 2.10
640 2453 6.014499 CCAGTACTGTATTGGGGGTATTCTAG 60.014 46.154 21.18 0.00 32.40 2.43
641 2454 6.781014 CAGTACTGTATTGGGGGTATTCTAGA 59.219 42.308 15.06 0.00 0.00 2.43
642 2455 7.289317 CAGTACTGTATTGGGGGTATTCTAGAA 59.711 40.741 15.06 7.82 0.00 2.10
643 2456 8.017251 AGTACTGTATTGGGGGTATTCTAGAAT 58.983 37.037 21.28 21.28 34.93 2.40
644 2457 7.079451 ACTGTATTGGGGGTATTCTAGAATG 57.921 40.000 25.22 8.30 32.50 2.67
645 2458 6.849697 ACTGTATTGGGGGTATTCTAGAATGA 59.150 38.462 25.22 8.90 32.50 2.57
646 2459 7.349859 ACTGTATTGGGGGTATTCTAGAATGAA 59.650 37.037 25.22 6.06 32.50 2.57
647 2460 8.108378 TGTATTGGGGGTATTCTAGAATGAAA 57.892 34.615 25.22 11.73 32.50 2.69
648 2461 8.561769 TGTATTGGGGGTATTCTAGAATGAAAA 58.438 33.333 25.22 12.32 32.50 2.29
649 2462 9.416284 GTATTGGGGGTATTCTAGAATGAAAAA 57.584 33.333 25.22 13.19 32.50 1.94
708 2521 1.076332 AAGCGCGACCAACAATCTAC 58.924 50.000 12.10 0.00 0.00 2.59
709 2522 0.246635 AGCGCGACCAACAATCTACT 59.753 50.000 12.10 0.00 0.00 2.57
710 2523 1.076332 GCGCGACCAACAATCTACTT 58.924 50.000 12.10 0.00 0.00 2.24
711 2524 2.094390 AGCGCGACCAACAATCTACTTA 60.094 45.455 12.10 0.00 0.00 2.24
718 2531 7.145985 GCGACCAACAATCTACTTATGATCTA 58.854 38.462 0.00 0.00 0.00 1.98
767 2580 1.266867 TGCTATCACTGCAGCCTCCA 61.267 55.000 15.27 0.72 36.95 3.86
813 2635 2.382519 CGCGGCGCCTATATATTCTAC 58.617 52.381 27.87 0.00 0.00 2.59
858 2691 1.139947 GTGACTCGTGCTAGCTCCC 59.860 63.158 17.23 2.93 0.00 4.30
895 2728 0.969894 CTCTCCGTCCATATCCACCC 59.030 60.000 0.00 0.00 0.00 4.61
926 2765 1.449778 AGCTCGTCGACCGATCTCA 60.450 57.895 10.58 0.00 46.23 3.27
970 2809 1.259507 CGAGCTAGCTACGTCTCTCAC 59.740 57.143 19.38 0.00 0.00 3.51
983 2826 1.212195 TCTCTCACCGGAAGCTAGCTA 59.788 52.381 19.70 0.00 0.00 3.32
984 2827 1.606668 CTCTCACCGGAAGCTAGCTAG 59.393 57.143 19.70 16.84 0.00 3.42
986 2829 0.033405 TCACCGGAAGCTAGCTAGGT 60.033 55.000 25.04 25.04 35.17 3.08
987 2830 1.213678 TCACCGGAAGCTAGCTAGGTA 59.786 52.381 28.06 18.18 33.01 3.08
988 2831 1.609555 CACCGGAAGCTAGCTAGGTAG 59.390 57.143 28.06 22.09 33.01 3.18
1278 3185 5.188434 ACCATGCATGCATATACATACTCC 58.812 41.667 31.73 0.00 34.91 3.85
1299 3206 3.057806 CCACGTCAAGACCAAATTAACCC 60.058 47.826 0.00 0.00 0.00 4.11
1319 3226 3.490759 CCGTCGTCAGCATGCACC 61.491 66.667 21.98 5.81 34.76 5.01
1328 3235 0.322816 CAGCATGCACCACCTACCTT 60.323 55.000 21.98 0.00 0.00 3.50
1346 3253 3.515901 ACCTTCCTTTACACAGGAGCTAG 59.484 47.826 0.00 0.00 44.18 3.42
1354 3261 1.006043 ACACAGGAGCTAGCTACAGGA 59.994 52.381 28.69 0.00 0.00 3.86
1355 3262 1.407258 CACAGGAGCTAGCTACAGGAC 59.593 57.143 28.69 9.96 0.00 3.85
1369 3319 6.126409 AGCTACAGGACATATAGGATAGCTC 58.874 44.000 0.00 0.00 39.90 4.09
1391 3344 5.084610 TCAAGTGAATTGTCGTCTACCACG 61.085 45.833 0.00 0.00 42.91 4.94
1392 3345 7.452559 TCAAGTGAATTGTCGTCTACCACGT 62.453 44.000 0.00 0.00 42.49 4.49
1485 3441 1.356624 GTTGCATGCGTATCTGGGC 59.643 57.895 14.09 0.00 0.00 5.36
1502 3458 1.065709 GGGCCAGGTGATAGAAAACGA 60.066 52.381 4.39 0.00 0.00 3.85
1504 3460 2.872858 GGCCAGGTGATAGAAAACGATC 59.127 50.000 0.00 0.00 0.00 3.69
1506 3462 3.123804 CCAGGTGATAGAAAACGATCCG 58.876 50.000 0.00 0.00 0.00 4.18
1507 3463 3.430374 CCAGGTGATAGAAAACGATCCGT 60.430 47.826 0.00 0.00 43.97 4.69
1508 3464 4.202080 CCAGGTGATAGAAAACGATCCGTA 60.202 45.833 0.00 0.00 39.99 4.02
1509 3465 4.976731 CAGGTGATAGAAAACGATCCGTAG 59.023 45.833 0.00 0.00 39.99 3.51
1510 3466 3.734735 GGTGATAGAAAACGATCCGTAGC 59.265 47.826 0.00 0.00 39.99 3.58
1511 3467 4.499357 GGTGATAGAAAACGATCCGTAGCT 60.499 45.833 0.00 0.00 39.99 3.32
1512 3468 4.441415 GTGATAGAAAACGATCCGTAGCTG 59.559 45.833 0.00 0.00 39.99 4.24
1513 3469 2.295253 AGAAAACGATCCGTAGCTGG 57.705 50.000 0.00 0.00 39.99 4.85
1514 3470 0.651031 GAAAACGATCCGTAGCTGGC 59.349 55.000 0.00 0.00 39.99 4.85
1515 3471 0.743345 AAAACGATCCGTAGCTGGCC 60.743 55.000 0.00 0.00 39.99 5.36
1516 3472 1.614241 AAACGATCCGTAGCTGGCCT 61.614 55.000 3.32 0.00 39.99 5.19
1553 3509 2.372264 CTTCCCAAGTACAGCATGCAT 58.628 47.619 21.98 10.24 42.53 3.96
1554 3510 1.753930 TCCCAAGTACAGCATGCATG 58.246 50.000 22.70 22.70 42.53 4.06
1577 3534 5.163509 TGCAGCAGTAGGAGTAGTAGAAATG 60.164 44.000 0.00 0.00 0.00 2.32
1618 3687 2.409948 AAGGAATGTGGCTGTAGCTC 57.590 50.000 3.63 0.00 41.70 4.09
1630 3699 2.482839 GCTGTAGCTCTTCTTGGCTAGG 60.483 54.545 0.00 0.00 40.98 3.02
1641 3710 2.203070 GGCTAGGCACCCATCACG 60.203 66.667 12.16 0.00 0.00 4.35
1642 3711 2.584608 GCTAGGCACCCATCACGT 59.415 61.111 0.00 0.00 0.00 4.49
1643 3712 1.682451 GGCTAGGCACCCATCACGTA 61.682 60.000 12.16 0.00 0.00 3.57
1644 3713 0.529992 GCTAGGCACCCATCACGTAC 60.530 60.000 0.00 0.00 0.00 3.67
1645 3714 1.112113 CTAGGCACCCATCACGTACT 58.888 55.000 0.00 0.00 0.00 2.73
1682 3751 1.132643 CAGCCCGCCGATATAGTACTC 59.867 57.143 0.00 0.00 0.00 2.59
1705 3950 0.393820 GTGGTGTTCGGTGAGGGTTA 59.606 55.000 0.00 0.00 0.00 2.85
1708 3953 1.505425 GTGTTCGGTGAGGGTTACAC 58.495 55.000 0.00 0.00 37.51 2.90
1728 3973 1.478916 CGGAATTAAATTTGCCGGGGT 59.521 47.619 2.18 0.00 38.40 4.95
1762 4017 1.000283 CACTGCCTAGATCCATCGTCC 60.000 57.143 0.00 0.00 0.00 4.79
1764 4019 1.543802 CTGCCTAGATCCATCGTCCTC 59.456 57.143 0.00 0.00 0.00 3.71
1766 4021 1.549037 GCCTAGATCCATCGTCCTCCT 60.549 57.143 0.00 0.00 0.00 3.69
1767 4022 2.883026 CCTAGATCCATCGTCCTCCTT 58.117 52.381 0.00 0.00 0.00 3.36
1768 4023 2.823154 CCTAGATCCATCGTCCTCCTTC 59.177 54.545 0.00 0.00 0.00 3.46
1770 4025 2.752030 AGATCCATCGTCCTCCTTCAA 58.248 47.619 0.00 0.00 0.00 2.69
1773 4028 2.257207 TCCATCGTCCTCCTTCAACTT 58.743 47.619 0.00 0.00 0.00 2.66
1775 4030 4.030913 TCCATCGTCCTCCTTCAACTTAT 58.969 43.478 0.00 0.00 0.00 1.73
1779 4034 6.821665 CCATCGTCCTCCTTCAACTTATAAAA 59.178 38.462 0.00 0.00 0.00 1.52
1783 4038 7.548075 TCGTCCTCCTTCAACTTATAAAACATC 59.452 37.037 0.00 0.00 0.00 3.06
1788 4136 9.708222 CTCCTTCAACTTATAAAACATCAATCG 57.292 33.333 0.00 0.00 0.00 3.34
1806 4154 1.186030 CGATGGTGCTTACGTACGTC 58.814 55.000 26.53 11.59 0.00 4.34
1808 4156 2.448219 GATGGTGCTTACGTACGTCTC 58.552 52.381 26.53 15.06 0.00 3.36
1812 4160 2.503871 GTGCTTACGTACGTCTCTCAC 58.496 52.381 26.53 22.02 0.00 3.51
1813 4161 2.159234 GTGCTTACGTACGTCTCTCACT 59.841 50.000 26.53 0.00 0.00 3.41
1814 4162 2.159037 TGCTTACGTACGTCTCTCACTG 59.841 50.000 26.53 8.13 0.00 3.66
1818 4167 1.530293 ACGTACGTCTCTCACTGTCAC 59.470 52.381 16.72 0.00 0.00 3.67
1827 4176 0.660595 CTCACTGTCACGTCACGACC 60.661 60.000 2.91 0.00 32.15 4.79
1841 4190 4.051237 GTCACGACCTAAAACGTTAACCT 58.949 43.478 0.00 0.00 40.76 3.50
1851 4201 7.028361 CCTAAAACGTTAACCTTTGTTGTGAA 58.972 34.615 0.00 0.00 35.87 3.18
2019 4369 0.386858 CTGGTACGTCGTGGAGTGTG 60.387 60.000 8.47 0.00 0.00 3.82
2048 4429 0.103755 AGCTCACGACGATCATGCAT 59.896 50.000 0.00 0.00 0.00 3.96
2049 4430 0.231534 GCTCACGACGATCATGCATG 59.768 55.000 21.07 21.07 0.00 4.06
2051 4432 1.520174 CTCACGACGATCATGCATGTC 59.480 52.381 25.43 19.54 0.00 3.06
2081 4489 6.040878 GCCAAAAGAAATTGATCTCATGGAG 58.959 40.000 12.22 0.00 37.30 3.86
2520 4928 0.458543 CCTCGTGGACCAGATGAACG 60.459 60.000 0.00 0.00 34.57 3.95
2568 4979 2.333926 TCAACGCCTACAACATCTTCG 58.666 47.619 0.00 0.00 0.00 3.79
2828 5239 1.376683 CGCGTCCCTTTGATCCCAA 60.377 57.895 0.00 0.00 0.00 4.12
2829 5240 0.748005 CGCGTCCCTTTGATCCCAAT 60.748 55.000 0.00 0.00 31.46 3.16
2830 5241 1.025041 GCGTCCCTTTGATCCCAATC 58.975 55.000 0.00 0.00 31.46 2.67
2832 5243 1.064758 CGTCCCTTTGATCCCAATCCA 60.065 52.381 0.00 0.00 31.46 3.41
2837 5261 2.626743 CCTTTGATCCCAATCCATGAGC 59.373 50.000 0.00 0.00 31.46 4.26
2842 5266 1.526917 CCCAATCCATGAGCGGTCC 60.527 63.158 12.85 0.00 0.00 4.46
2854 5278 0.324368 AGCGGTCCATCCAGTACAGA 60.324 55.000 0.00 0.00 35.57 3.41
2855 5279 0.535335 GCGGTCCATCCAGTACAGAA 59.465 55.000 0.00 0.00 35.57 3.02
2856 5280 1.471676 GCGGTCCATCCAGTACAGAAG 60.472 57.143 0.00 0.00 35.57 2.85
2876 5300 4.021102 AGTGTACAAGTCCCATTTCCTG 57.979 45.455 0.00 0.00 0.00 3.86
2884 5308 0.331278 TCCCATTTCCTGTCGCCAAT 59.669 50.000 0.00 0.00 0.00 3.16
2904 5329 5.362263 CAATAAGGGCATGGAAAAGGATTG 58.638 41.667 0.00 0.00 0.00 2.67
2917 5342 5.714047 GAAAAGGATTGATTCTTTTCGCCT 58.286 37.500 17.33 0.00 44.58 5.52
2931 5369 3.343941 TTCGCCTACATTAGCCTGTTT 57.656 42.857 0.00 0.00 0.00 2.83
2932 5370 2.901249 TCGCCTACATTAGCCTGTTTC 58.099 47.619 0.00 0.00 0.00 2.78
2934 5372 2.866762 CGCCTACATTAGCCTGTTTCTC 59.133 50.000 0.00 0.00 0.00 2.87
2944 5386 8.424133 ACATTAGCCTGTTTCTCTTTTCATTTT 58.576 29.630 0.00 0.00 0.00 1.82
2976 5418 0.237235 ACGCCATGCAGTTTGTAACG 59.763 50.000 0.00 0.00 36.23 3.18
2995 5437 7.218614 TGTAACGGGTATAGACAATAATTGGG 58.781 38.462 0.00 0.00 34.12 4.12
3007 5449 8.599624 AGACAATAATTGGGTTTCATTCATCT 57.400 30.769 0.00 0.00 34.12 2.90
3035 5477 5.104735 GGATTAAGGTGTTCAGTGGAGAGAT 60.105 44.000 0.00 0.00 0.00 2.75
3036 5478 3.692257 AAGGTGTTCAGTGGAGAGATG 57.308 47.619 0.00 0.00 0.00 2.90
3038 5480 1.902508 GGTGTTCAGTGGAGAGATGGA 59.097 52.381 0.00 0.00 0.00 3.41
3050 5492 3.703556 GGAGAGATGGAGATGTGTTCAGA 59.296 47.826 0.00 0.00 0.00 3.27
3052 5494 5.163322 GGAGAGATGGAGATGTGTTCAGAAT 60.163 44.000 0.00 0.00 0.00 2.40
3053 5495 6.310764 AGAGATGGAGATGTGTTCAGAATT 57.689 37.500 0.00 0.00 0.00 2.17
3054 5496 7.418368 GGAGAGATGGAGATGTGTTCAGAATTA 60.418 40.741 0.00 0.00 0.00 1.40
3057 5499 9.118300 GAGATGGAGATGTGTTCAGAATTATTT 57.882 33.333 0.00 0.00 0.00 1.40
3058 5500 8.900781 AGATGGAGATGTGTTCAGAATTATTTG 58.099 33.333 0.00 0.00 0.00 2.32
3059 5501 7.395190 TGGAGATGTGTTCAGAATTATTTGG 57.605 36.000 0.00 0.00 0.00 3.28
3060 5502 6.947733 TGGAGATGTGTTCAGAATTATTTGGT 59.052 34.615 0.00 0.00 0.00 3.67
3062 5504 7.970614 GGAGATGTGTTCAGAATTATTTGGTTC 59.029 37.037 0.00 0.00 0.00 3.62
3063 5505 8.408043 AGATGTGTTCAGAATTATTTGGTTCA 57.592 30.769 0.00 0.00 0.00 3.18
3065 5507 9.643693 GATGTGTTCAGAATTATTTGGTTCATT 57.356 29.630 0.00 0.00 0.00 2.57
3072 5514 9.527157 TCAGAATTATTTGGTTCATTAGTTGGA 57.473 29.630 0.00 0.00 0.00 3.53
3073 5515 9.573133 CAGAATTATTTGGTTCATTAGTTGGAC 57.427 33.333 0.00 0.00 32.45 4.02
3074 5516 9.308000 AGAATTATTTGGTTCATTAGTTGGACA 57.692 29.630 0.00 0.00 35.27 4.02
3075 5517 9.573133 GAATTATTTGGTTCATTAGTTGGACAG 57.427 33.333 0.00 0.00 35.27 3.51
3076 5518 8.650143 ATTATTTGGTTCATTAGTTGGACAGT 57.350 30.769 0.00 0.00 35.27 3.55
3077 5519 6.976934 ATTTGGTTCATTAGTTGGACAGTT 57.023 33.333 0.00 0.00 35.27 3.16
3078 5520 9.575868 TTATTTGGTTCATTAGTTGGACAGTTA 57.424 29.630 0.00 0.00 35.27 2.24
3079 5521 7.504924 TTTGGTTCATTAGTTGGACAGTTAG 57.495 36.000 0.00 0.00 35.27 2.34
3080 5522 6.428083 TGGTTCATTAGTTGGACAGTTAGA 57.572 37.500 0.00 0.00 35.27 2.10
3081 5523 6.833041 TGGTTCATTAGTTGGACAGTTAGAA 58.167 36.000 0.00 0.00 35.27 2.10
3082 5524 7.458397 TGGTTCATTAGTTGGACAGTTAGAAT 58.542 34.615 0.00 0.00 35.27 2.40
3083 5525 7.390440 TGGTTCATTAGTTGGACAGTTAGAATG 59.610 37.037 0.00 0.00 35.27 2.67
3084 5526 7.148239 GGTTCATTAGTTGGACAGTTAGAATGG 60.148 40.741 0.00 0.00 35.27 3.16
3085 5527 6.414732 TCATTAGTTGGACAGTTAGAATGGG 58.585 40.000 0.00 0.00 0.00 4.00
3086 5528 5.836024 TTAGTTGGACAGTTAGAATGGGT 57.164 39.130 0.00 0.00 0.00 4.51
3087 5529 4.724279 AGTTGGACAGTTAGAATGGGTT 57.276 40.909 0.00 0.00 0.00 4.11
3088 5530 5.061721 AGTTGGACAGTTAGAATGGGTTT 57.938 39.130 0.00 0.00 0.00 3.27
3089 5531 5.454966 AGTTGGACAGTTAGAATGGGTTTT 58.545 37.500 0.00 0.00 0.00 2.43
3090 5532 5.535030 AGTTGGACAGTTAGAATGGGTTTTC 59.465 40.000 0.00 0.00 0.00 2.29
3091 5533 5.055265 TGGACAGTTAGAATGGGTTTTCA 57.945 39.130 0.00 0.00 0.00 2.69
3092 5534 5.450453 TGGACAGTTAGAATGGGTTTTCAA 58.550 37.500 0.00 0.00 0.00 2.69
3112 5554 9.687210 TTTTCAATTTCATTCATTCAGAGACTG 57.313 29.630 0.00 0.00 0.00 3.51
3121 5563 3.136443 TCATTCAGAGACTGGTTGTGGTT 59.864 43.478 0.00 0.00 31.51 3.67
3123 5565 0.947244 CAGAGACTGGTTGTGGTTGC 59.053 55.000 0.00 0.00 0.00 4.17
3137 5579 1.797537 GTTGCGCTCCATTTCGTGC 60.798 57.895 9.73 0.00 37.18 5.34
3167 5614 4.163458 TCACATCACATTTCACATGTGC 57.837 40.909 21.38 0.00 46.49 4.57
3172 5619 1.271379 CACATTTCACATGTGCAGCCT 59.729 47.619 21.38 0.25 42.19 4.58
3268 5715 0.676782 ACGGCACAAGGATAACAGCC 60.677 55.000 0.00 0.00 38.73 4.85
3289 5736 3.313249 CCGCTGAAGCATATTGATCACAA 59.687 43.478 0.00 0.00 42.21 3.33
3306 5753 0.664166 CAACACACGGCAGCCATTTC 60.664 55.000 13.30 0.00 0.00 2.17
3361 5808 0.606401 ATGCCTTTCACCTCACCACG 60.606 55.000 0.00 0.00 0.00 4.94
3362 5809 1.070786 GCCTTTCACCTCACCACGA 59.929 57.895 0.00 0.00 0.00 4.35
3367 5814 0.601558 TTCACCTCACCACGAGCTAC 59.398 55.000 0.00 0.00 40.78 3.58
3434 5881 2.083774 TCAAACCATCGCATCAGGAAC 58.916 47.619 0.00 0.00 0.00 3.62
3481 5930 8.752766 AACATTCAGAAACAAAAGAGCATATG 57.247 30.769 0.00 0.00 0.00 1.78
3499 5948 6.101650 CATATGTGCAGATAGTGTAGGGAA 57.898 41.667 9.65 0.00 0.00 3.97
3506 5958 4.442192 GCAGATAGTGTAGGGAACAAGGAG 60.442 50.000 0.00 0.00 40.63 3.69
3510 5962 1.278413 GTGTAGGGAACAAGGAGGACC 59.722 57.143 0.00 0.00 40.63 4.46
3646 6098 4.143333 CCGGGGCTCACGTACTGG 62.143 72.222 0.00 0.00 0.00 4.00
3670 6122 1.080093 CTTGAAGTAGCGCCGGACA 60.080 57.895 5.05 0.00 0.00 4.02
3781 6233 7.549488 GGGAGCCTGAAACATACATACATATAC 59.451 40.741 0.00 0.00 0.00 1.47
3796 6252 5.468540 ACATATACAGGCAGAGCGAAATA 57.531 39.130 0.00 0.00 0.00 1.40
3809 6266 6.018425 GCAGAGCGAAATATGAGAAATTCAGA 60.018 38.462 0.00 0.00 39.68 3.27
3810 6267 7.466455 GCAGAGCGAAATATGAGAAATTCAGAA 60.466 37.037 0.00 0.00 39.68 3.02
3811 6268 7.850003 CAGAGCGAAATATGAGAAATTCAGAAC 59.150 37.037 0.00 0.00 39.68 3.01
3812 6269 7.550551 AGAGCGAAATATGAGAAATTCAGAACA 59.449 33.333 0.00 0.00 39.68 3.18
3813 6270 8.044060 AGCGAAATATGAGAAATTCAGAACAA 57.956 30.769 0.00 0.00 39.68 2.83
3814 6271 8.680903 AGCGAAATATGAGAAATTCAGAACAAT 58.319 29.630 0.00 0.00 39.68 2.71
3815 6272 9.935682 GCGAAATATGAGAAATTCAGAACAATA 57.064 29.630 0.00 0.00 39.68 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.544684 TCAGTGAAGCACATGAACAGTT 58.455 40.909 0.00 0.00 36.74 3.16
15 16 1.202154 GCAGCATGATCAGTGAAGCAC 60.202 52.381 0.09 0.00 39.69 4.40
18 19 1.400846 GTGGCAGCATGATCAGTGAAG 59.599 52.381 0.09 0.00 39.69 3.02
48 49 4.250305 GGTGCGGTGTGGGTCTGT 62.250 66.667 0.00 0.00 0.00 3.41
61 62 2.686816 CGGTGGTTGGATTCGGTGC 61.687 63.158 0.00 0.00 0.00 5.01
141 149 4.798433 TGCAAGTGGGCACTGTAG 57.202 55.556 0.00 0.00 41.58 2.74
188 245 3.323774 TTAATTCTCCGGGCTCCTAGA 57.676 47.619 0.00 0.00 0.00 2.43
264 321 4.153958 TGTAATTACTGGTTTGCTTGCG 57.846 40.909 16.33 0.00 0.00 4.85
282 339 2.981805 GTGTGTCTAACGTGCGATTGTA 59.018 45.455 0.00 0.00 0.00 2.41
286 343 1.000607 AGTGTGTGTCTAACGTGCGAT 60.001 47.619 0.00 0.00 0.00 4.58
290 347 3.183754 TGTCAAGTGTGTGTCTAACGTG 58.816 45.455 0.00 0.00 0.00 4.49
337 405 5.221263 TGGCCTTGTCTTCTACGATAGAATC 60.221 44.000 3.32 5.93 43.32 2.52
347 415 4.286032 ACAGTAACATGGCCTTGTCTTCTA 59.714 41.667 23.35 10.28 0.00 2.10
372 446 6.142798 GTGCATCACCGCATTTAATTGAATAG 59.857 38.462 1.55 0.00 45.26 1.73
377 451 2.531103 CGTGCATCACCGCATTTAATTG 59.469 45.455 0.00 0.00 45.26 2.32
382 2180 1.523154 AACCGTGCATCACCGCATTT 61.523 50.000 0.00 0.00 45.26 2.32
414 2215 3.002965 GGCCGAAAATACAGGTAATTCCG 59.997 47.826 0.00 0.00 41.99 4.30
454 2258 9.969001 ATTACTGAACAAGGCCTTAAGTTATTA 57.031 29.630 20.00 8.19 0.00 0.98
456 2260 8.107095 TGATTACTGAACAAGGCCTTAAGTTAT 58.893 33.333 20.00 17.03 0.00 1.89
462 2266 4.250464 CGTGATTACTGAACAAGGCCTTA 58.750 43.478 20.00 0.68 0.00 2.69
463 2267 3.074412 CGTGATTACTGAACAAGGCCTT 58.926 45.455 13.78 13.78 0.00 4.35
464 2268 2.615493 CCGTGATTACTGAACAAGGCCT 60.615 50.000 0.00 0.00 0.00 5.19
465 2269 1.737793 CCGTGATTACTGAACAAGGCC 59.262 52.381 0.00 0.00 0.00 5.19
466 2270 2.695359 TCCGTGATTACTGAACAAGGC 58.305 47.619 0.00 0.00 34.27 4.35
467 2271 5.063944 CAGATTCCGTGATTACTGAACAAGG 59.936 44.000 0.00 0.00 33.71 3.61
468 2272 5.446473 GCAGATTCCGTGATTACTGAACAAG 60.446 44.000 0.00 0.00 33.71 3.16
469 2273 4.391830 GCAGATTCCGTGATTACTGAACAA 59.608 41.667 0.00 0.00 33.71 2.83
470 2274 3.932710 GCAGATTCCGTGATTACTGAACA 59.067 43.478 0.00 0.00 33.71 3.18
471 2275 3.000322 CGCAGATTCCGTGATTACTGAAC 60.000 47.826 0.00 0.00 33.71 3.18
472 2276 3.186909 CGCAGATTCCGTGATTACTGAA 58.813 45.455 0.00 0.00 35.06 3.02
473 2277 2.481276 CCGCAGATTCCGTGATTACTGA 60.481 50.000 0.00 0.00 0.00 3.41
474 2278 1.860950 CCGCAGATTCCGTGATTACTG 59.139 52.381 0.00 0.00 0.00 2.74
475 2279 1.754803 TCCGCAGATTCCGTGATTACT 59.245 47.619 0.00 0.00 0.00 2.24
476 2280 2.128035 CTCCGCAGATTCCGTGATTAC 58.872 52.381 0.00 0.00 0.00 1.89
477 2281 1.538204 GCTCCGCAGATTCCGTGATTA 60.538 52.381 0.00 0.00 0.00 1.75
478 2282 0.811616 GCTCCGCAGATTCCGTGATT 60.812 55.000 0.00 0.00 0.00 2.57
479 2283 1.227380 GCTCCGCAGATTCCGTGAT 60.227 57.895 0.00 0.00 0.00 3.06
480 2284 2.184322 GCTCCGCAGATTCCGTGA 59.816 61.111 0.00 0.00 0.00 4.35
481 2285 3.257561 CGCTCCGCAGATTCCGTG 61.258 66.667 0.00 0.00 0.00 4.94
482 2286 4.514577 CCGCTCCGCAGATTCCGT 62.515 66.667 0.00 0.00 0.00 4.69
484 2288 4.918201 CCCCGCTCCGCAGATTCC 62.918 72.222 0.00 0.00 0.00 3.01
485 2289 2.869503 TTTCCCCGCTCCGCAGATTC 62.870 60.000 0.00 0.00 0.00 2.52
486 2290 2.966732 TTTCCCCGCTCCGCAGATT 61.967 57.895 0.00 0.00 0.00 2.40
487 2291 3.399181 TTTCCCCGCTCCGCAGAT 61.399 61.111 0.00 0.00 0.00 2.90
488 2292 4.388499 GTTTCCCCGCTCCGCAGA 62.388 66.667 0.00 0.00 0.00 4.26
489 2293 4.394712 AGTTTCCCCGCTCCGCAG 62.395 66.667 0.00 0.00 0.00 5.18
490 2294 4.697756 CAGTTTCCCCGCTCCGCA 62.698 66.667 0.00 0.00 0.00 5.69
492 2296 4.697756 TGCAGTTTCCCCGCTCCG 62.698 66.667 0.00 0.00 0.00 4.63
493 2297 1.250840 AATTGCAGTTTCCCCGCTCC 61.251 55.000 0.00 0.00 0.00 4.70
494 2298 0.603065 AAATTGCAGTTTCCCCGCTC 59.397 50.000 0.65 0.00 0.00 5.03
495 2299 0.603065 GAAATTGCAGTTTCCCCGCT 59.397 50.000 20.69 0.00 33.10 5.52
496 2300 0.732538 CGAAATTGCAGTTTCCCCGC 60.733 55.000 23.99 4.98 35.23 6.13
497 2301 0.732538 GCGAAATTGCAGTTTCCCCG 60.733 55.000 23.99 16.46 35.23 5.73
498 2302 0.603065 AGCGAAATTGCAGTTTCCCC 59.397 50.000 23.99 16.73 35.23 4.81
499 2303 3.782889 ATAGCGAAATTGCAGTTTCCC 57.217 42.857 23.99 17.45 35.23 3.97
500 2304 5.633182 TCAAAATAGCGAAATTGCAGTTTCC 59.367 36.000 23.99 17.69 35.23 3.13
501 2305 6.582295 TCTCAAAATAGCGAAATTGCAGTTTC 59.418 34.615 21.23 21.23 37.31 2.78
502 2306 6.446318 TCTCAAAATAGCGAAATTGCAGTTT 58.554 32.000 6.93 6.93 37.31 2.66
503 2307 6.012658 TCTCAAAATAGCGAAATTGCAGTT 57.987 33.333 0.00 0.00 37.31 3.16
504 2308 5.627499 TCTCAAAATAGCGAAATTGCAGT 57.373 34.783 0.00 0.00 37.31 4.40
505 2309 5.051907 GCATCTCAAAATAGCGAAATTGCAG 60.052 40.000 0.00 0.00 37.31 4.41
506 2310 4.799949 GCATCTCAAAATAGCGAAATTGCA 59.200 37.500 0.00 0.00 37.31 4.08
507 2311 4.799949 TGCATCTCAAAATAGCGAAATTGC 59.200 37.500 0.00 0.00 0.00 3.56
508 2312 5.051907 GCTGCATCTCAAAATAGCGAAATTG 60.052 40.000 0.00 0.00 0.00 2.32
509 2313 5.039333 GCTGCATCTCAAAATAGCGAAATT 58.961 37.500 0.00 0.00 0.00 1.82
510 2314 4.337555 AGCTGCATCTCAAAATAGCGAAAT 59.662 37.500 1.02 0.00 36.36 2.17
511 2315 3.691118 AGCTGCATCTCAAAATAGCGAAA 59.309 39.130 1.02 0.00 36.36 3.46
512 2316 3.273434 AGCTGCATCTCAAAATAGCGAA 58.727 40.909 1.02 0.00 36.36 4.70
513 2317 2.868583 GAGCTGCATCTCAAAATAGCGA 59.131 45.455 12.62 0.00 36.36 4.93
514 2318 2.032204 GGAGCTGCATCTCAAAATAGCG 60.032 50.000 18.65 0.00 36.36 4.26
515 2319 2.032204 CGGAGCTGCATCTCAAAATAGC 60.032 50.000 18.65 0.00 34.84 2.97
516 2320 3.874400 CGGAGCTGCATCTCAAAATAG 57.126 47.619 18.65 0.11 34.84 1.73
532 2336 2.260869 CCACAACAGTTGGGCGGAG 61.261 63.158 17.76 0.00 30.97 4.63
533 2337 2.203280 CCACAACAGTTGGGCGGA 60.203 61.111 17.76 0.00 30.97 5.54
534 2338 2.203280 TCCACAACAGTTGGGCGG 60.203 61.111 17.76 13.90 30.97 6.13
535 2339 2.908073 GCTCCACAACAGTTGGGCG 61.908 63.158 17.76 11.31 30.97 6.13
536 2340 2.908073 CGCTCCACAACAGTTGGGC 61.908 63.158 17.76 13.56 30.97 5.36
537 2341 2.260869 CCGCTCCACAACAGTTGGG 61.261 63.158 17.76 13.57 34.12 4.12
538 2342 1.227823 TCCGCTCCACAACAGTTGG 60.228 57.895 17.76 1.29 34.12 3.77
539 2343 1.507141 GGTCCGCTCCACAACAGTTG 61.507 60.000 12.03 12.03 0.00 3.16
540 2344 1.227853 GGTCCGCTCCACAACAGTT 60.228 57.895 0.00 0.00 0.00 3.16
541 2345 2.426023 GGTCCGCTCCACAACAGT 59.574 61.111 0.00 0.00 0.00 3.55
542 2346 2.507110 ATCGGTCCGCTCCACAACAG 62.507 60.000 6.34 0.00 0.00 3.16
543 2347 1.252215 TATCGGTCCGCTCCACAACA 61.252 55.000 6.34 0.00 0.00 3.33
544 2348 0.804933 GTATCGGTCCGCTCCACAAC 60.805 60.000 6.34 0.00 0.00 3.32
545 2349 1.514087 GTATCGGTCCGCTCCACAA 59.486 57.895 6.34 0.00 0.00 3.33
546 2350 2.420568 GGTATCGGTCCGCTCCACA 61.421 63.158 6.34 0.00 0.00 4.17
547 2351 2.416260 GGTATCGGTCCGCTCCAC 59.584 66.667 6.34 1.20 0.00 4.02
548 2352 3.214123 CGGTATCGGTCCGCTCCA 61.214 66.667 6.34 0.00 41.48 3.86
549 2353 2.484062 TTCGGTATCGGTCCGCTCC 61.484 63.158 6.34 7.70 46.49 4.70
550 2354 1.298938 GTTCGGTATCGGTCCGCTC 60.299 63.158 6.34 0.00 46.49 5.03
551 2355 2.048023 TGTTCGGTATCGGTCCGCT 61.048 57.895 6.34 0.00 46.49 5.52
552 2356 1.875364 GTGTTCGGTATCGGTCCGC 60.875 63.158 6.34 0.00 46.49 5.54
554 2358 1.226773 CGGTGTTCGGTATCGGTCC 60.227 63.158 0.00 0.00 36.95 4.46
555 2359 1.875364 GCGGTGTTCGGTATCGGTC 60.875 63.158 0.00 0.00 39.69 4.79
556 2360 2.182537 GCGGTGTTCGGTATCGGT 59.817 61.111 0.00 0.00 39.69 4.69
557 2361 1.727511 TAGGCGGTGTTCGGTATCGG 61.728 60.000 0.00 0.00 39.69 4.18
558 2362 0.101040 TTAGGCGGTGTTCGGTATCG 59.899 55.000 0.00 0.00 39.69 2.92
559 2363 1.135721 ACTTAGGCGGTGTTCGGTATC 59.864 52.381 0.00 0.00 39.69 2.24
560 2364 1.135721 GACTTAGGCGGTGTTCGGTAT 59.864 52.381 0.00 0.00 39.69 2.73
561 2365 0.527565 GACTTAGGCGGTGTTCGGTA 59.472 55.000 0.00 0.00 39.69 4.02
562 2366 1.291272 GACTTAGGCGGTGTTCGGT 59.709 57.895 0.00 0.00 39.69 4.69
563 2367 1.012486 GTGACTTAGGCGGTGTTCGG 61.012 60.000 0.00 0.00 39.69 4.30
564 2368 0.038526 AGTGACTTAGGCGGTGTTCG 60.039 55.000 0.00 0.00 42.76 3.95
565 2369 1.000506 TGAGTGACTTAGGCGGTGTTC 59.999 52.381 0.00 0.00 0.00 3.18
566 2370 1.045407 TGAGTGACTTAGGCGGTGTT 58.955 50.000 0.00 0.00 0.00 3.32
567 2371 1.045407 TTGAGTGACTTAGGCGGTGT 58.955 50.000 0.00 0.00 0.00 4.16
568 2372 2.163818 TTTGAGTGACTTAGGCGGTG 57.836 50.000 0.00 0.00 0.00 4.94
569 2373 2.104281 AGTTTTGAGTGACTTAGGCGGT 59.896 45.455 0.00 0.00 0.00 5.68
570 2374 2.737252 GAGTTTTGAGTGACTTAGGCGG 59.263 50.000 0.00 0.00 0.00 6.13
571 2375 2.408704 CGAGTTTTGAGTGACTTAGGCG 59.591 50.000 0.00 0.00 0.00 5.52
572 2376 3.650139 TCGAGTTTTGAGTGACTTAGGC 58.350 45.455 0.00 0.00 0.00 3.93
573 2377 4.559251 CGATCGAGTTTTGAGTGACTTAGG 59.441 45.833 10.26 0.00 0.00 2.69
574 2378 5.391449 TCGATCGAGTTTTGAGTGACTTAG 58.609 41.667 15.15 0.00 0.00 2.18
608 2412 3.815401 CCCAATACAGTACTGGCATTAGC 59.185 47.826 26.12 0.00 41.10 3.09
609 2413 4.389374 CCCCAATACAGTACTGGCATTAG 58.611 47.826 26.12 16.41 34.19 1.73
659 2472 2.512896 AGCTAGCCCCAGTACAGTAGTA 59.487 50.000 12.13 0.00 0.00 1.82
660 2473 1.288335 AGCTAGCCCCAGTACAGTAGT 59.712 52.381 12.13 0.00 0.00 2.73
661 2474 1.957877 GAGCTAGCCCCAGTACAGTAG 59.042 57.143 12.13 0.00 0.00 2.57
662 2475 1.749635 CGAGCTAGCCCCAGTACAGTA 60.750 57.143 12.13 0.00 0.00 2.74
663 2476 1.038130 CGAGCTAGCCCCAGTACAGT 61.038 60.000 12.13 0.00 0.00 3.55
664 2477 1.736586 CGAGCTAGCCCCAGTACAG 59.263 63.158 12.13 0.00 0.00 2.74
665 2478 2.423898 GCGAGCTAGCCCCAGTACA 61.424 63.158 12.13 0.00 0.00 2.90
666 2479 2.417936 GCGAGCTAGCCCCAGTAC 59.582 66.667 12.13 0.00 0.00 2.73
708 2521 4.388165 CGCTCCACTTGCATAGATCATAAG 59.612 45.833 0.00 0.00 0.00 1.73
709 2522 4.309933 CGCTCCACTTGCATAGATCATAA 58.690 43.478 0.00 0.00 0.00 1.90
710 2523 3.862264 GCGCTCCACTTGCATAGATCATA 60.862 47.826 0.00 0.00 0.00 2.15
711 2524 2.763933 CGCTCCACTTGCATAGATCAT 58.236 47.619 0.00 0.00 0.00 2.45
718 2531 3.121030 GACGCGCTCCACTTGCAT 61.121 61.111 5.73 0.00 0.00 3.96
809 2631 1.000019 CCCACGGGACTGAGGTAGA 60.000 63.158 0.00 0.00 37.50 2.59
813 2635 1.990060 ATGACCCACGGGACTGAGG 60.990 63.158 9.72 0.00 38.96 3.86
951 2790 1.600485 GGTGAGAGACGTAGCTAGCTC 59.400 57.143 23.26 12.07 0.00 4.09
970 2809 0.599060 GCTACCTAGCTAGCTTCCGG 59.401 60.000 24.88 21.73 45.62 5.14
1233 3091 5.460091 GGTTAGTTAATTACCGATGACGTCC 59.540 44.000 14.12 0.00 37.88 4.79
1278 3185 3.364565 CGGGTTAATTTGGTCTTGACGTG 60.365 47.826 0.00 0.00 0.00 4.49
1319 3226 3.581332 TCCTGTGTAAAGGAAGGTAGGTG 59.419 47.826 0.00 0.00 43.57 4.00
1328 3235 2.821437 AGCTAGCTCCTGTGTAAAGGA 58.179 47.619 12.68 0.00 44.35 3.36
1346 3253 5.888724 TGAGCTATCCTATATGTCCTGTAGC 59.111 44.000 0.00 0.00 34.92 3.58
1354 3261 8.654997 ACAATTCACTTGAGCTATCCTATATGT 58.345 33.333 0.00 0.00 38.29 2.29
1355 3262 9.149225 GACAATTCACTTGAGCTATCCTATATG 57.851 37.037 0.00 0.00 38.29 1.78
1369 3319 4.647291 GTGGTAGACGACAATTCACTTG 57.353 45.455 0.00 0.00 40.90 3.16
1391 3344 0.247145 CGAAACGAATGCGCTGGTAC 60.247 55.000 9.73 0.00 42.48 3.34
1392 3345 1.355796 CCGAAACGAATGCGCTGGTA 61.356 55.000 9.73 0.00 42.48 3.25
1422 3378 2.869801 GCCATAAACATGGTCGAATCGA 59.130 45.455 0.00 0.00 43.53 3.59
1423 3379 2.348498 CGCCATAAACATGGTCGAATCG 60.348 50.000 12.20 0.00 43.53 3.34
1425 3381 1.946768 CCGCCATAAACATGGTCGAAT 59.053 47.619 16.61 0.00 43.53 3.34
1426 3382 1.339247 ACCGCCATAAACATGGTCGAA 60.339 47.619 16.61 0.00 43.53 3.71
1467 3423 1.356624 GCCCAGATACGCATGCAAC 59.643 57.895 19.57 5.44 0.00 4.17
1485 3441 3.123804 CGGATCGTTTTCTATCACCTGG 58.876 50.000 0.00 0.00 0.00 4.45
1502 3458 3.866582 GGCAGGCCAGCTACGGAT 61.867 66.667 20.55 0.00 35.81 4.18
1504 3460 4.845580 CAGGCAGGCCAGCTACGG 62.846 72.222 20.55 0.93 38.92 4.02
1514 3470 1.895707 GATCGGAATGCCAGGCAGG 60.896 63.158 21.51 9.15 43.65 4.85
1515 3471 1.895707 GGATCGGAATGCCAGGCAG 60.896 63.158 21.51 6.14 43.65 4.85
1516 3472 1.925285 AAGGATCGGAATGCCAGGCA 61.925 55.000 18.99 18.99 44.86 4.75
1553 3509 3.646736 TCTACTACTCCTACTGCTGCA 57.353 47.619 0.88 0.88 0.00 4.41
1554 3510 4.985538 TTTCTACTACTCCTACTGCTGC 57.014 45.455 0.00 0.00 0.00 5.25
1555 3511 6.458232 ACATTTCTACTACTCCTACTGCTG 57.542 41.667 0.00 0.00 0.00 4.41
1556 3512 6.663953 TGAACATTTCTACTACTCCTACTGCT 59.336 38.462 0.00 0.00 0.00 4.24
1557 3513 6.864342 TGAACATTTCTACTACTCCTACTGC 58.136 40.000 0.00 0.00 0.00 4.40
1558 3514 7.976734 CCTTGAACATTTCTACTACTCCTACTG 59.023 40.741 0.00 0.00 0.00 2.74
1559 3515 7.674772 ACCTTGAACATTTCTACTACTCCTACT 59.325 37.037 0.00 0.00 0.00 2.57
1560 3516 7.838884 ACCTTGAACATTTCTACTACTCCTAC 58.161 38.462 0.00 0.00 0.00 3.18
1561 3517 9.186837 CTACCTTGAACATTTCTACTACTCCTA 57.813 37.037 0.00 0.00 0.00 2.94
1562 3518 6.936968 ACCTTGAACATTTCTACTACTCCT 57.063 37.500 0.00 0.00 0.00 3.69
1563 3519 7.093421 ACCTACCTTGAACATTTCTACTACTCC 60.093 40.741 0.00 0.00 0.00 3.85
1564 3520 7.760340 CACCTACCTTGAACATTTCTACTACTC 59.240 40.741 0.00 0.00 0.00 2.59
1577 3534 7.662669 TCCTTTATTTACACACCTACCTTGAAC 59.337 37.037 0.00 0.00 0.00 3.18
1618 3687 4.645809 GGGTGCCTAGCCAAGAAG 57.354 61.111 0.00 0.00 44.02 2.85
1630 3699 2.953669 CGTAGTACGTGATGGGTGC 58.046 57.895 14.62 0.00 36.74 5.01
1682 3751 2.279851 TCACCGAACACCACTGCG 60.280 61.111 0.00 0.00 0.00 5.18
1705 3950 2.094442 CCCGGCAAATTTAATTCCGTGT 60.094 45.455 14.01 0.00 38.54 4.49
1708 3953 1.478916 ACCCCGGCAAATTTAATTCCG 59.521 47.619 9.85 9.85 39.79 4.30
1728 3973 4.574674 AGGCAGTGGTTCTTGATGAATA 57.425 40.909 0.00 0.00 36.99 1.75
1762 4017 9.708222 CGATTGATGTTTTATAAGTTGAAGGAG 57.292 33.333 0.00 0.00 0.00 3.69
1775 4030 8.743933 ACGTAAGCACCATCGATTGATGTTTTA 61.744 37.037 19.55 10.39 46.27 1.52
1779 4034 3.678806 ACGTAAGCACCATCGATTGATGT 60.679 43.478 19.55 7.09 46.27 3.06
1783 4038 2.215587 CGTACGTAAGCACCATCGATTG 59.784 50.000 7.22 0.00 45.62 2.67
1788 4136 2.097142 AGAGACGTACGTAAGCACCATC 59.903 50.000 22.87 5.32 45.62 3.51
1806 4154 0.586802 TCGTGACGTGACAGTGAGAG 59.413 55.000 5.87 0.00 0.00 3.20
1808 4156 0.660595 GGTCGTGACGTGACAGTGAG 60.661 60.000 5.87 0.00 38.10 3.51
1812 4160 2.410785 TTTAGGTCGTGACGTGACAG 57.589 50.000 5.87 0.00 38.10 3.51
1813 4161 2.462889 GTTTTAGGTCGTGACGTGACA 58.537 47.619 5.87 0.00 38.10 3.58
1814 4162 1.449418 CGTTTTAGGTCGTGACGTGAC 59.551 52.381 4.40 0.00 35.60 3.67
1818 4167 3.121362 GGTTAACGTTTTAGGTCGTGACG 60.121 47.826 5.91 0.00 40.19 4.35
1827 4176 8.623310 ATTCACAACAAAGGTTAACGTTTTAG 57.377 30.769 20.55 14.12 34.87 1.85
2019 4369 1.256376 CGTCGTGAGCTTGTGATATGC 59.744 52.381 0.00 0.00 0.00 3.14
2031 4381 1.520174 GACATGCATGATCGTCGTGAG 59.480 52.381 32.75 1.99 35.46 3.51
2048 4429 1.674359 TTTCTTTTGGCTCTGCGACA 58.326 45.000 0.00 0.00 0.00 4.35
2049 4430 2.982470 CAATTTCTTTTGGCTCTGCGAC 59.018 45.455 0.00 0.00 0.00 5.19
2051 4432 3.287312 TCAATTTCTTTTGGCTCTGCG 57.713 42.857 0.00 0.00 0.00 5.18
2052 4433 5.069501 AGATCAATTTCTTTTGGCTCTGC 57.930 39.130 0.00 0.00 0.00 4.26
2054 4435 6.127423 CCATGAGATCAATTTCTTTTGGCTCT 60.127 38.462 0.00 0.00 33.48 4.09
2060 4441 6.154021 CCCACTCCATGAGATCAATTTCTTTT 59.846 38.462 0.00 0.00 33.32 2.27
2081 4489 3.405592 CTGCATGCATCACGCCCAC 62.406 63.158 22.97 0.00 41.33 4.61
2466 4874 0.543277 TTGAAGATCTGGATGGCGCT 59.457 50.000 7.64 0.00 0.00 5.92
2828 5239 1.056125 TGGATGGACCGCTCATGGAT 61.056 55.000 0.00 0.00 42.61 3.41
2829 5240 1.688884 TGGATGGACCGCTCATGGA 60.689 57.895 0.00 0.00 42.61 3.41
2830 5241 1.227764 CTGGATGGACCGCTCATGG 60.228 63.158 0.00 0.00 42.61 3.66
2832 5243 0.753262 GTACTGGATGGACCGCTCAT 59.247 55.000 0.00 0.00 42.61 2.90
2837 5261 1.825474 ACTTCTGTACTGGATGGACCG 59.175 52.381 0.00 0.00 42.61 4.79
2854 5278 4.141251 ACAGGAAATGGGACTTGTACACTT 60.141 41.667 0.00 0.00 0.00 3.16
2855 5279 3.394606 ACAGGAAATGGGACTTGTACACT 59.605 43.478 0.00 0.00 0.00 3.55
2856 5280 3.751518 ACAGGAAATGGGACTTGTACAC 58.248 45.455 0.00 0.00 0.00 2.90
2884 5308 4.329638 TCAATCCTTTTCCATGCCCTTA 57.670 40.909 0.00 0.00 0.00 2.69
2904 5329 5.096954 GGCTAATGTAGGCGAAAAGAATC 57.903 43.478 0.00 0.00 41.69 2.52
2915 5340 6.655003 TGAAAAGAGAAACAGGCTAATGTAGG 59.345 38.462 0.00 0.00 31.70 3.18
2916 5341 7.672983 TGAAAAGAGAAACAGGCTAATGTAG 57.327 36.000 0.00 0.00 31.70 2.74
2917 5342 8.635765 AATGAAAAGAGAAACAGGCTAATGTA 57.364 30.769 0.00 0.00 31.70 2.29
2931 5369 6.960992 CGTATTCATCGCAAAATGAAAAGAGA 59.039 34.615 9.42 0.00 45.91 3.10
2932 5370 6.960992 TCGTATTCATCGCAAAATGAAAAGAG 59.039 34.615 9.42 4.03 45.91 2.85
2934 5372 6.290026 CGTCGTATTCATCGCAAAATGAAAAG 60.290 38.462 9.42 5.56 45.91 2.27
2976 5418 8.706322 ATGAAACCCAATTATTGTCTATACCC 57.294 34.615 4.15 0.00 0.00 3.69
2995 5437 8.186821 CACCTTAATCCTTGAGATGAATGAAAC 58.813 37.037 0.00 0.00 34.56 2.78
3007 5449 4.349636 TCCACTGAACACCTTAATCCTTGA 59.650 41.667 0.00 0.00 0.00 3.02
3035 5477 6.947733 ACCAAATAATTCTGAACACATCTCCA 59.052 34.615 0.00 0.00 0.00 3.86
3036 5478 7.396540 ACCAAATAATTCTGAACACATCTCC 57.603 36.000 0.00 0.00 0.00 3.71
3038 5480 8.408043 TGAACCAAATAATTCTGAACACATCT 57.592 30.769 0.00 0.00 0.00 2.90
3050 5492 9.088987 ACTGTCCAACTAATGAACCAAATAATT 57.911 29.630 0.00 0.00 0.00 1.40
3052 5494 8.472007 AACTGTCCAACTAATGAACCAAATAA 57.528 30.769 0.00 0.00 0.00 1.40
3053 5495 9.226606 CTAACTGTCCAACTAATGAACCAAATA 57.773 33.333 0.00 0.00 0.00 1.40
3054 5496 6.976934 AACTGTCCAACTAATGAACCAAAT 57.023 33.333 0.00 0.00 0.00 2.32
3057 5499 6.428083 TCTAACTGTCCAACTAATGAACCA 57.572 37.500 0.00 0.00 0.00 3.67
3058 5500 7.148239 CCATTCTAACTGTCCAACTAATGAACC 60.148 40.741 0.00 0.00 0.00 3.62
3059 5501 7.148239 CCCATTCTAACTGTCCAACTAATGAAC 60.148 40.741 0.00 0.00 0.00 3.18
3060 5502 6.884295 CCCATTCTAACTGTCCAACTAATGAA 59.116 38.462 0.00 0.00 0.00 2.57
3062 5504 6.180472 ACCCATTCTAACTGTCCAACTAATG 58.820 40.000 0.00 0.00 0.00 1.90
3063 5505 6.388619 ACCCATTCTAACTGTCCAACTAAT 57.611 37.500 0.00 0.00 0.00 1.73
3065 5507 5.836024 AACCCATTCTAACTGTCCAACTA 57.164 39.130 0.00 0.00 0.00 2.24
3066 5508 4.724279 AACCCATTCTAACTGTCCAACT 57.276 40.909 0.00 0.00 0.00 3.16
3067 5509 5.300792 TGAAAACCCATTCTAACTGTCCAAC 59.699 40.000 0.00 0.00 0.00 3.77
3068 5510 5.450453 TGAAAACCCATTCTAACTGTCCAA 58.550 37.500 0.00 0.00 0.00 3.53
3069 5511 5.055265 TGAAAACCCATTCTAACTGTCCA 57.945 39.130 0.00 0.00 0.00 4.02
3070 5512 6.590234 ATTGAAAACCCATTCTAACTGTCC 57.410 37.500 0.00 0.00 0.00 4.02
3071 5513 8.141268 TGAAATTGAAAACCCATTCTAACTGTC 58.859 33.333 0.00 0.00 0.00 3.51
3072 5514 8.017418 TGAAATTGAAAACCCATTCTAACTGT 57.983 30.769 0.00 0.00 0.00 3.55
3073 5515 9.492973 AATGAAATTGAAAACCCATTCTAACTG 57.507 29.630 0.00 0.00 33.44 3.16
3074 5516 9.710900 GAATGAAATTGAAAACCCATTCTAACT 57.289 29.630 0.00 0.00 36.07 2.24
3075 5517 9.487790 TGAATGAAATTGAAAACCCATTCTAAC 57.512 29.630 0.00 0.00 38.69 2.34
3078 5520 9.223099 GAATGAATGAAATTGAAAACCCATTCT 57.777 29.630 0.00 0.00 38.69 2.40
3079 5521 9.001542 TGAATGAATGAAATTGAAAACCCATTC 57.998 29.630 0.00 0.00 36.07 2.67
3080 5522 8.921353 TGAATGAATGAAATTGAAAACCCATT 57.079 26.923 0.00 0.00 36.07 3.16
3081 5523 8.377034 TCTGAATGAATGAAATTGAAAACCCAT 58.623 29.630 0.00 0.00 36.07 4.00
3082 5524 7.733969 TCTGAATGAATGAAATTGAAAACCCA 58.266 30.769 0.00 0.00 36.07 4.51
3083 5525 8.090214 TCTCTGAATGAATGAAATTGAAAACCC 58.910 33.333 0.00 0.00 36.07 4.11
3084 5526 8.919661 GTCTCTGAATGAATGAAATTGAAAACC 58.080 33.333 0.00 0.00 36.07 3.27
3085 5527 9.688592 AGTCTCTGAATGAATGAAATTGAAAAC 57.311 29.630 0.00 0.00 36.07 2.43
3086 5528 9.687210 CAGTCTCTGAATGAATGAAATTGAAAA 57.313 29.630 0.00 0.00 31.99 2.29
3087 5529 8.301720 CCAGTCTCTGAATGAATGAAATTGAAA 58.698 33.333 0.00 0.00 31.99 2.69
3088 5530 7.449395 ACCAGTCTCTGAATGAATGAAATTGAA 59.551 33.333 0.00 0.00 31.99 2.69
3089 5531 6.944290 ACCAGTCTCTGAATGAATGAAATTGA 59.056 34.615 0.00 0.00 31.99 2.57
3090 5532 7.154435 ACCAGTCTCTGAATGAATGAAATTG 57.846 36.000 0.00 0.00 31.99 2.32
3091 5533 7.232127 ACAACCAGTCTCTGAATGAATGAAATT 59.768 33.333 0.00 0.00 33.95 1.82
3092 5534 6.718454 ACAACCAGTCTCTGAATGAATGAAAT 59.282 34.615 0.00 0.00 32.44 2.17
3112 5554 1.805428 AATGGAGCGCAACCACAACC 61.805 55.000 24.31 8.69 40.36 3.77
3121 5563 2.358615 AGCACGAAATGGAGCGCA 60.359 55.556 11.47 0.00 0.00 6.09
3123 5565 1.712081 CTCAGCACGAAATGGAGCG 59.288 57.895 0.00 0.00 0.00 5.03
3137 5579 4.155280 TGAAATGTGATGTGATGTGCTCAG 59.845 41.667 0.00 0.00 33.51 3.35
3166 5613 3.916761 TGAATGAAACATTCAAGGCTGC 58.083 40.909 20.07 0.00 43.95 5.25
3167 5614 5.716094 TGATGAATGAAACATTCAAGGCTG 58.284 37.500 24.11 0.00 43.95 4.85
3268 5715 4.201841 TGTTGTGATCAATATGCTTCAGCG 60.202 41.667 0.00 0.00 38.73 5.18
3289 5736 2.268076 GGAAATGGCTGCCGTGTGT 61.268 57.895 15.33 2.75 0.00 3.72
3306 5753 4.319177 AGAAGAGAAACGAGTGGAAATGG 58.681 43.478 0.00 0.00 0.00 3.16
3361 5808 4.830600 AGAGAGCCTAGGTTTATGTAGCTC 59.169 45.833 11.31 7.16 0.00 4.09
3362 5809 4.810345 AGAGAGCCTAGGTTTATGTAGCT 58.190 43.478 11.31 0.00 0.00 3.32
3367 5814 3.135530 AGCCAAGAGAGCCTAGGTTTATG 59.864 47.826 11.31 2.64 0.00 1.90
3446 5893 6.851222 TGTTTCTGAATGTTTCTCTCTGTC 57.149 37.500 0.00 0.00 0.00 3.51
3447 5894 7.630242 TTTGTTTCTGAATGTTTCTCTCTGT 57.370 32.000 0.00 0.00 0.00 3.41
3448 5895 8.400947 TCTTTTGTTTCTGAATGTTTCTCTCTG 58.599 33.333 0.00 0.00 0.00 3.35
3454 5901 7.704789 ATGCTCTTTTGTTTCTGAATGTTTC 57.295 32.000 0.00 0.00 0.00 2.78
3455 5902 9.199982 CATATGCTCTTTTGTTTCTGAATGTTT 57.800 29.630 0.00 0.00 0.00 2.83
3481 5930 3.887621 TGTTCCCTACACTATCTGCAC 57.112 47.619 0.00 0.00 0.00 4.57
3499 5948 3.637273 GCCGTGGGTCCTCCTTGT 61.637 66.667 0.00 0.00 36.20 3.16
3646 6098 1.491505 GGCGCTACTTCAAGATCGGC 61.492 60.000 7.64 0.00 35.54 5.54
3670 6122 1.267261 GCCTACATCTACGAGACGCAT 59.733 52.381 0.00 0.00 0.00 4.73
3781 6233 3.103447 TCTCATATTTCGCTCTGCCTG 57.897 47.619 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.