Multiple sequence alignment - TraesCS3A01G282500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G282500 chr3A 100.000 4891 0 0 875 5765 510841073 510836183 0.000000e+00 9033.0
1 TraesCS3A01G282500 chr3A 100.000 248 0 0 1 248 510841947 510841700 5.260000e-125 459.0
2 TraesCS3A01G282500 chr3D 96.674 1774 34 12 949 2713 390421513 390419756 0.000000e+00 2926.0
3 TraesCS3A01G282500 chr3D 94.114 1495 49 18 3911 5369 390418575 390417084 0.000000e+00 2237.0
4 TraesCS3A01G282500 chr3D 97.822 1102 23 1 2816 3916 390419757 390418656 0.000000e+00 1901.0
5 TraesCS3A01G282500 chr3D 94.030 201 10 2 49 248 390422058 390421859 2.610000e-78 303.0
6 TraesCS3A01G282500 chr3D 90.374 187 18 0 5531 5717 500123410 500123596 4.460000e-61 246.0
7 TraesCS3A01G282500 chr3D 92.969 128 8 1 5393 5520 390416208 390416082 9.860000e-43 185.0
8 TraesCS3A01G282500 chr3D 96.154 52 2 0 5714 5765 500123632 500123683 1.030000e-12 86.1
9 TraesCS3A01G282500 chr3B 93.586 1871 68 15 877 2725 507507540 507505700 0.000000e+00 2743.0
10 TraesCS3A01G282500 chr3B 90.620 1290 72 19 4277 5525 507502184 507500903 0.000000e+00 1666.0
11 TraesCS3A01G282500 chr3B 96.000 725 27 2 2808 3531 507505561 507504838 0.000000e+00 1177.0
12 TraesCS3A01G282500 chr3B 94.958 357 16 2 3561 3916 507504840 507504485 5.050000e-155 558.0
13 TraesCS3A01G282500 chr3B 96.273 161 5 1 3921 4080 507504390 507504230 4.430000e-66 263.0
14 TraesCS3A01G282500 chr3B 91.099 191 16 1 5527 5717 11526277 11526466 2.060000e-64 257.0
15 TraesCS3A01G282500 chr3B 91.053 190 17 0 5528 5717 815280688 815280877 2.060000e-64 257.0
16 TraesCS3A01G282500 chr3B 93.077 130 6 2 120 248 507507963 507507836 2.740000e-43 187.0
17 TraesCS3A01G282500 chr3B 90.741 108 10 0 4077 4184 362877595 362877488 1.670000e-30 145.0
18 TraesCS3A01G282500 chr3B 91.089 101 1 2 4180 4280 507504235 507504143 4.690000e-26 130.0
19 TraesCS3A01G282500 chr3B 96.154 52 2 0 5714 5765 815280914 815280965 1.030000e-12 86.1
20 TraesCS3A01G282500 chr3B 92.308 52 4 0 5714 5765 720996902 720996953 2.230000e-09 75.0
21 TraesCS3A01G282500 chr3B 90.385 52 5 0 5714 5765 106286558 106286609 1.040000e-07 69.4
22 TraesCS3A01G282500 chr2B 91.878 197 14 2 5523 5717 199467835 199467639 2.050000e-69 274.0
23 TraesCS3A01G282500 chr2B 94.231 52 3 0 5714 5765 199467602 199467551 4.790000e-11 80.5
24 TraesCS3A01G282500 chr5B 91.979 187 15 0 5531 5717 391130900 391131086 4.430000e-66 263.0
25 TraesCS3A01G282500 chr5B 91.935 186 15 0 5532 5717 570588786 570588601 1.590000e-65 261.0
26 TraesCS3A01G282500 chr5B 94.231 52 3 0 5714 5765 505477011 505476960 4.790000e-11 80.5
27 TraesCS3A01G282500 chr1D 90.811 185 16 1 5533 5717 310167380 310167563 4.460000e-61 246.0
28 TraesCS3A01G282500 chr5D 88.649 185 21 0 5533 5717 418066483 418066299 5.810000e-55 226.0
29 TraesCS3A01G282500 chr5D 95.370 108 4 1 4076 4183 396686914 396686808 2.760000e-38 171.0
30 TraesCS3A01G282500 chr5D 89.286 112 8 2 4075 4184 203278114 203278005 2.800000e-28 137.0
31 TraesCS3A01G282500 chr5D 94.231 52 3 0 5714 5765 283652365 283652314 4.790000e-11 80.5
32 TraesCS3A01G282500 chr5D 92.308 52 4 0 5714 5765 418066262 418066211 2.230000e-09 75.0
33 TraesCS3A01G282500 chr1A 88.235 187 21 1 5531 5717 547398126 547398311 7.520000e-54 222.0
34 TraesCS3A01G282500 chr1A 96.667 120 1 3 2703 2820 11269019 11269137 4.560000e-46 196.0
35 TraesCS3A01G282500 chr7D 98.246 114 1 1 2712 2824 126669804 126669691 1.270000e-46 198.0
36 TraesCS3A01G282500 chr1B 98.214 112 1 1 2708 2818 8679429 8679540 1.640000e-45 195.0
37 TraesCS3A01G282500 chrUn 96.581 117 3 1 2702 2817 150795941 150796057 5.900000e-45 193.0
38 TraesCS3A01G282500 chrUn 96.154 52 2 0 5714 5765 70199530 70199581 1.030000e-12 86.1
39 TraesCS3A01G282500 chr6B 97.368 114 2 1 2712 2824 218024850 218024963 5.900000e-45 193.0
40 TraesCS3A01G282500 chr6B 94.444 126 2 5 2699 2822 27997654 27997532 7.630000e-44 189.0
41 TraesCS3A01G282500 chr6A 96.552 116 3 1 2704 2818 542057049 542057164 2.120000e-44 191.0
42 TraesCS3A01G282500 chr7A 98.165 109 1 1 2710 2817 609518900 609519008 7.630000e-44 189.0
43 TraesCS3A01G282500 chr2A 94.309 123 5 2 2704 2825 205919772 205919893 2.740000e-43 187.0
44 TraesCS3A01G282500 chr4B 89.831 118 8 2 4074 4189 23001966 23001851 1.290000e-31 148.0
45 TraesCS3A01G282500 chr4B 89.286 112 8 2 4075 4184 199847974 199848083 2.800000e-28 137.0
46 TraesCS3A01G282500 chr4B 89.286 112 8 2 4075 4184 462108709 462108600 2.800000e-28 137.0
47 TraesCS3A01G282500 chr7B 88.430 121 12 2 4069 4188 451076742 451076861 1.670000e-30 145.0
48 TraesCS3A01G282500 chr7B 88.793 116 8 3 4073 4185 106475690 106475803 2.800000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G282500 chr3A 510836183 510841947 5764 True 4746.000000 9033 100.000000 1 5765 2 chr3A.!!$R1 5764
1 TraesCS3A01G282500 chr3D 390416082 390422058 5976 True 1510.400000 2926 95.121800 49 5520 5 chr3D.!!$R1 5471
2 TraesCS3A01G282500 chr3B 507500903 507507963 7060 True 960.571429 2743 93.657571 120 5525 7 chr3B.!!$R2 5405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 906 0.326927 TCCACCTTTCCCCATTCGAC 59.673 55.000 0.00 0.00 0.00 4.20 F
1533 1557 1.033574 GGGACGACCTCGATGAAGAT 58.966 55.000 3.44 0.00 43.02 2.40 F
1831 1857 1.808411 TTAGAGCCAAGCCGTCTTTG 58.192 50.000 0.00 0.00 0.00 2.77 F
2472 2501 0.243636 GAAATCGGCACTGTTTGGGG 59.756 55.000 0.00 0.00 0.00 4.96 F
2729 2761 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01 F
4028 4209 1.419381 TGCTGGATGGTATCGGCTTA 58.581 50.000 0.00 0.00 32.54 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2472 2501 0.109132 CACATCGGAAAGCCCAAAGC 60.109 55.000 0.00 0.0 44.25 3.51 R
2473 2502 0.109132 GCACATCGGAAAGCCCAAAG 60.109 55.000 0.00 0.0 34.14 2.77 R
2788 2842 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.0 0.00 5.19 R
4307 6460 0.909610 CCCCCAGCACAGAGGACTTA 60.910 60.000 0.00 0.0 0.00 2.24 R
4659 6813 1.071471 AGAACTGCCCACTTGACCG 59.929 57.895 0.00 0.0 0.00 4.79 R
5418 8454 0.322456 GTAGCTGGCACCACATCCAA 60.322 55.000 0.00 0.0 30.98 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.285977 GCGAGGTGTATGGGTTTAAGG 58.714 52.381 0.00 0.00 0.00 2.69
21 22 2.355412 GCGAGGTGTATGGGTTTAAGGT 60.355 50.000 0.00 0.00 0.00 3.50
22 23 3.871074 GCGAGGTGTATGGGTTTAAGGTT 60.871 47.826 0.00 0.00 0.00 3.50
23 24 4.329392 CGAGGTGTATGGGTTTAAGGTTT 58.671 43.478 0.00 0.00 0.00 3.27
24 25 4.763279 CGAGGTGTATGGGTTTAAGGTTTT 59.237 41.667 0.00 0.00 0.00 2.43
25 26 5.242171 CGAGGTGTATGGGTTTAAGGTTTTT 59.758 40.000 0.00 0.00 0.00 1.94
45 46 3.874383 TTTCAGACTTCACCCAATCCA 57.126 42.857 0.00 0.00 0.00 3.41
46 47 3.423539 TTCAGACTTCACCCAATCCAG 57.576 47.619 0.00 0.00 0.00 3.86
47 48 2.619931 TCAGACTTCACCCAATCCAGA 58.380 47.619 0.00 0.00 0.00 3.86
75 76 4.893601 GAGCGCGCCCTCCTAACC 62.894 72.222 30.33 1.85 0.00 2.85
152 153 1.535204 AACATTTCTGCCCAAGCCCG 61.535 55.000 0.00 0.00 38.69 6.13
221 222 2.682352 CCCAGCCAAACCAAACAAAAAG 59.318 45.455 0.00 0.00 0.00 2.27
222 223 3.604582 CCAGCCAAACCAAACAAAAAGA 58.395 40.909 0.00 0.00 0.00 2.52
233 234 3.891056 AACAAAAAGACCGACCGAATC 57.109 42.857 0.00 0.00 0.00 2.52
905 906 0.326927 TCCACCTTTCCCCATTCGAC 59.673 55.000 0.00 0.00 0.00 4.20
1533 1557 1.033574 GGGACGACCTCGATGAAGAT 58.966 55.000 3.44 0.00 43.02 2.40
1601 1625 3.926616 AGTCCAAGGTACGATTCAACTG 58.073 45.455 0.00 0.00 0.00 3.16
1631 1656 6.051179 ACTCCTAGTTCTATTGTGGGTTTC 57.949 41.667 0.00 0.00 0.00 2.78
1659 1684 5.252547 TGTTTGCATCTCACAGCCTTAATA 58.747 37.500 0.00 0.00 0.00 0.98
1766 1792 8.523658 GCTAAACCTTAGAATTTTGATGGACTT 58.476 33.333 0.00 0.00 0.00 3.01
1777 1803 5.867903 TTTGATGGACTTGAATTGTTGGT 57.132 34.783 0.00 0.00 0.00 3.67
1831 1857 1.808411 TTAGAGCCAAGCCGTCTTTG 58.192 50.000 0.00 0.00 0.00 2.77
2472 2501 0.243636 GAAATCGGCACTGTTTGGGG 59.756 55.000 0.00 0.00 0.00 4.96
2473 2502 1.815817 AAATCGGCACTGTTTGGGGC 61.816 55.000 0.00 0.00 41.80 5.80
2474 2503 2.713531 AATCGGCACTGTTTGGGGCT 62.714 55.000 0.00 0.00 43.22 5.19
2475 2504 2.713531 ATCGGCACTGTTTGGGGCTT 62.714 55.000 0.00 0.00 43.22 4.35
2476 2505 2.498056 CGGCACTGTTTGGGGCTTT 61.498 57.895 0.00 0.00 43.22 3.51
2477 2506 1.069596 GGCACTGTTTGGGGCTTTG 59.930 57.895 0.00 0.00 41.98 2.77
2478 2507 1.069596 GCACTGTTTGGGGCTTTGG 59.930 57.895 0.00 0.00 0.00 3.28
2479 2508 1.747774 CACTGTTTGGGGCTTTGGG 59.252 57.895 0.00 0.00 0.00 4.12
2537 2566 6.301486 GGGATGAATCATATATGCTGCCATA 58.699 40.000 7.92 0.00 38.25 2.74
2554 2583 4.042311 TGCCATAGTTCTTTGGTTAGTGGA 59.958 41.667 10.10 0.00 35.34 4.02
2598 2630 3.515602 AGAAAAGCCTGTCCAGTTGAT 57.484 42.857 0.00 0.00 0.00 2.57
2618 2650 8.462016 AGTTGATTTCTTTGGATCTTTATTCCG 58.538 33.333 0.00 0.00 35.94 4.30
2721 2753 1.757118 TCTTGCATTCTACTCCCTCCG 59.243 52.381 0.00 0.00 0.00 4.63
2725 2757 1.536284 GCATTCTACTCCCTCCGTTCG 60.536 57.143 0.00 0.00 0.00 3.95
2726 2758 1.067212 CATTCTACTCCCTCCGTTCGG 59.933 57.143 4.74 4.74 0.00 4.30
2729 2761 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
2732 2764 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2733 2765 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2734 2766 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2739 2771 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
2740 2772 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
2745 2799 6.214399 GTTCGGAATTACTTGTCTCGGATAT 58.786 40.000 0.00 0.00 0.00 1.63
2754 2808 6.274157 ACTTGTCTCGGATATGGATGTATC 57.726 41.667 0.00 0.00 0.00 2.24
2759 2813 7.402862 TGTCTCGGATATGGATGTATCTAGAA 58.597 38.462 0.00 0.00 31.35 2.10
2760 2814 7.337184 TGTCTCGGATATGGATGTATCTAGAAC 59.663 40.741 0.00 0.00 31.35 3.01
2761 2815 7.554835 GTCTCGGATATGGATGTATCTAGAACT 59.445 40.741 0.00 0.00 31.35 3.01
2763 2817 9.397280 CTCGGATATGGATGTATCTAGAACTAA 57.603 37.037 0.00 0.00 32.78 2.24
2764 2818 9.749340 TCGGATATGGATGTATCTAGAACTAAA 57.251 33.333 0.00 0.00 32.78 1.85
2782 2836 9.570468 AGAACTAAATACGTCTAGATACATCCA 57.430 33.333 0.00 0.00 0.00 3.41
2788 2842 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
2789 2843 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
2790 2844 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
2791 2845 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
2792 2846 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
2793 2847 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
2794 2848 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
2795 2849 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
2796 2850 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
2797 2851 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
2798 2852 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
2800 2854 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
2801 2855 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
2802 2856 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
2803 2857 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
2804 2858 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
2806 2860 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
2839 2927 9.424319 AGTATAAAATATCTACGCCATTCACAG 57.576 33.333 0.00 0.00 0.00 3.66
2852 2940 1.533625 TTCACAGTGCTAACCATGCC 58.466 50.000 0.00 0.00 0.00 4.40
2946 3035 7.259290 TGACATCTTTTTGTTACAGTCCTTC 57.741 36.000 0.00 0.00 0.00 3.46
3112 3201 3.999001 GGTTAGTGTTTCCTTAGTTCCCG 59.001 47.826 0.00 0.00 0.00 5.14
3162 3251 4.887071 ACTGTTTTCTGTAAGTCAATGCCA 59.113 37.500 0.00 0.00 33.76 4.92
3168 3257 3.091545 CTGTAAGTCAATGCCAATGGGT 58.908 45.455 0.00 0.00 36.17 4.51
3220 3309 6.757237 TCTGCTGCCATTTCTGAAAATAAAA 58.243 32.000 6.95 0.00 33.27 1.52
3232 3321 9.825972 TTTCTGAAAATAAAATTCTGCTAGTCG 57.174 29.630 0.00 0.00 0.00 4.18
3242 3331 5.950758 ATTCTGCTAGTCGTATGTAGAGG 57.049 43.478 0.00 0.00 0.00 3.69
3292 3381 4.094590 CAGTGTCTGATTGGAATTCTGCTC 59.905 45.833 5.23 0.60 32.44 4.26
3401 3490 4.998672 AGCTGCACATAAATTTGCACATTT 59.001 33.333 14.78 14.78 43.79 2.32
3523 3612 6.870965 TGACTTCTCTCTTAATTCTCTTGCAC 59.129 38.462 0.00 0.00 0.00 4.57
3564 3653 6.769134 AGTTAGCACAAGTTTTACCTTTGT 57.231 33.333 0.00 0.00 35.56 2.83
4028 4209 1.419381 TGCTGGATGGTATCGGCTTA 58.581 50.000 0.00 0.00 32.54 3.09
4060 4241 9.021863 ATTTTGTTAAATGTTTGCTTTTGCATG 57.978 25.926 0.00 0.00 42.63 4.06
4084 4265 4.626529 GCTGGCTCATTTTAGTACTCCCTT 60.627 45.833 0.00 0.00 0.00 3.95
4102 4283 2.671396 CCTTCGTCCGGAATTACTTGTG 59.329 50.000 5.23 0.00 33.26 3.33
4172 4363 4.451629 TCTCTGACAAGTATTTCCGGAC 57.548 45.455 1.83 0.00 0.00 4.79
4192 4383 4.097135 GGACGGAGGGAGTACTAAAACTAC 59.903 50.000 0.00 0.00 0.00 2.73
4236 4427 6.127675 TGCTGTTTTTCTTAACGTTTACCCTT 60.128 34.615 5.91 0.00 0.00 3.95
4237 4428 6.197655 GCTGTTTTTCTTAACGTTTACCCTTG 59.802 38.462 5.91 0.00 0.00 3.61
4507 6660 4.949856 GGTTTATCCTGCTCAAGAAATCCA 59.050 41.667 0.00 0.00 0.00 3.41
4599 6752 2.032030 CCACAGTTTGGTTGTAGCTTCG 60.032 50.000 0.00 0.00 41.10 3.79
4611 6764 7.269316 TGGTTGTAGCTTCGATTATACATTCA 58.731 34.615 0.00 4.91 0.00 2.57
4620 6773 8.695284 GCTTCGATTATACATTCACTCTAACTG 58.305 37.037 0.00 0.00 0.00 3.16
4621 6774 9.737427 CTTCGATTATACATTCACTCTAACTGT 57.263 33.333 0.00 0.00 0.00 3.55
4659 6813 1.104577 TTGGGCGGTCAAAGTGGAAC 61.105 55.000 0.00 0.00 0.00 3.62
4894 7053 2.551459 GAGATGCAGCTTGTTCTTGTGT 59.449 45.455 5.67 0.00 0.00 3.72
4901 7060 4.067896 CAGCTTGTTCTTGTGTCCATAGT 58.932 43.478 0.00 0.00 0.00 2.12
4943 7102 7.663827 TCAACCGGTCTATTACATATGTAAGG 58.336 38.462 27.40 23.38 42.94 2.69
4964 7138 0.969894 CCCGAAGAGACTGGTGAAGT 59.030 55.000 0.00 0.00 43.85 3.01
5024 7198 9.114952 GAGATAAAATAAGCTCAAGCCTAGTTT 57.885 33.333 9.99 9.99 43.38 2.66
5045 7219 1.202428 GCCGTTTGTAAGGTGGCAAAA 60.202 47.619 0.00 0.00 45.06 2.44
5064 7238 1.985473 AGAAATGCTTGTGGACTGCA 58.015 45.000 0.00 0.00 41.13 4.41
5135 7309 4.262164 GGATTGTCTGCCAATTTTGTGACT 60.262 41.667 0.00 0.00 43.87 3.41
5220 7394 0.527113 TGGATGAATTGGCGTGCTTG 59.473 50.000 0.00 0.00 0.00 4.01
5262 7436 8.063153 TCTTGTATTCCTCTACATGTAACCCTA 58.937 37.037 7.06 0.00 31.94 3.53
5271 7445 8.755977 CCTCTACATGTAACCCTAACTAAAGAA 58.244 37.037 7.06 0.00 0.00 2.52
5276 7450 8.387813 ACATGTAACCCTAACTAAAGAATTGGA 58.612 33.333 0.00 0.00 0.00 3.53
5280 7454 9.376075 GTAACCCTAACTAAAGAATTGGAGTAC 57.624 37.037 0.00 0.00 0.00 2.73
5281 7455 7.809880 ACCCTAACTAAAGAATTGGAGTACT 57.190 36.000 0.00 0.00 0.00 2.73
5282 7456 8.215954 ACCCTAACTAAAGAATTGGAGTACTT 57.784 34.615 0.00 0.00 0.00 2.24
5284 7458 8.947115 CCCTAACTAAAGAATTGGAGTACTTTG 58.053 37.037 0.00 0.00 34.93 2.77
5285 7459 8.947115 CCTAACTAAAGAATTGGAGTACTTTGG 58.053 37.037 0.00 0.00 37.05 3.28
5288 7462 6.715264 ACTAAAGAATTGGAGTACTTTGGTGG 59.285 38.462 0.00 0.00 40.51 4.61
5294 7475 2.775384 TGGAGTACTTTGGTGGAACTGT 59.225 45.455 0.00 0.00 36.74 3.55
5357 7604 6.369065 ACTGTCGGATATTGAACTTTGAGAAC 59.631 38.462 0.00 0.00 0.00 3.01
5382 7635 8.150945 ACTCAAGTCTCTTGCACTAAAATTAGA 58.849 33.333 7.17 0.00 34.84 2.10
5387 7640 6.655425 GTCTCTTGCACTAAAATTAGAGGGTT 59.345 38.462 7.17 0.00 34.84 4.11
5390 7643 7.001674 TCTTGCACTAAAATTAGAGGGTTGAA 58.998 34.615 7.17 0.00 34.84 2.69
5400 7653 3.547054 AGAGGGTTGAACACAACGTAA 57.453 42.857 0.00 0.00 43.08 3.18
5418 8454 5.834239 CGTAATCCGTCAACTTAACAAGT 57.166 39.130 0.00 0.00 45.46 3.16
5460 8496 4.008074 AGGTGTTCTACATGACTTGGTG 57.992 45.455 0.00 0.00 0.00 4.17
5468 8504 1.145738 ACATGACTTGGTGGCTTTCCT 59.854 47.619 0.00 0.00 0.00 3.36
5520 8556 5.295787 TGCTGAAATATTACTAGCCCGTTTG 59.704 40.000 12.97 0.00 33.60 2.93
5525 8561 1.816074 TTACTAGCCCGTTTGCAAGG 58.184 50.000 0.00 0.00 0.00 3.61
5526 8562 0.688487 TACTAGCCCGTTTGCAAGGT 59.312 50.000 0.00 0.00 0.00 3.50
5527 8563 0.179001 ACTAGCCCGTTTGCAAGGTT 60.179 50.000 0.00 0.00 0.00 3.50
5528 8564 0.958822 CTAGCCCGTTTGCAAGGTTT 59.041 50.000 0.00 0.00 0.00 3.27
5529 8565 1.339929 CTAGCCCGTTTGCAAGGTTTT 59.660 47.619 0.00 0.00 0.00 2.43
5530 8566 0.539518 AGCCCGTTTGCAAGGTTTTT 59.460 45.000 0.00 0.00 0.00 1.94
5555 8591 5.467035 TTTTTACAGAAAGGCCTTCATGG 57.533 39.130 25.61 16.25 36.40 3.66
5570 8606 6.319141 CCTTCATGGCTAGCTTTATTAACC 57.681 41.667 15.72 0.00 0.00 2.85
5571 8607 6.064717 CCTTCATGGCTAGCTTTATTAACCT 58.935 40.000 15.72 0.00 0.00 3.50
5572 8608 6.205658 CCTTCATGGCTAGCTTTATTAACCTC 59.794 42.308 15.72 0.00 0.00 3.85
5573 8609 6.247229 TCATGGCTAGCTTTATTAACCTCA 57.753 37.500 15.72 0.00 0.00 3.86
5574 8610 6.658849 TCATGGCTAGCTTTATTAACCTCAA 58.341 36.000 15.72 0.00 0.00 3.02
5575 8611 7.116075 TCATGGCTAGCTTTATTAACCTCAAA 58.884 34.615 15.72 0.00 0.00 2.69
5576 8612 7.779798 TCATGGCTAGCTTTATTAACCTCAAAT 59.220 33.333 15.72 0.00 0.00 2.32
5577 8613 9.066892 CATGGCTAGCTTTATTAACCTCAAATA 57.933 33.333 15.72 0.00 0.00 1.40
5578 8614 9.640952 ATGGCTAGCTTTATTAACCTCAAATAA 57.359 29.630 15.72 0.00 0.00 1.40
5579 8615 9.640952 TGGCTAGCTTTATTAACCTCAAATAAT 57.359 29.630 15.72 0.00 30.91 1.28
5580 8616 9.899226 GGCTAGCTTTATTAACCTCAAATAATG 57.101 33.333 15.72 0.00 30.91 1.90
5581 8617 9.399403 GCTAGCTTTATTAACCTCAAATAATGC 57.601 33.333 7.70 13.99 43.41 3.56
5592 8628 7.944729 ACCTCAAATAATGCTTACATTGTCT 57.055 32.000 0.00 0.00 46.08 3.41
5593 8629 9.461312 AACCTCAAATAATGCTTACATTGTCTA 57.539 29.630 0.00 0.00 46.08 2.59
5594 8630 8.893727 ACCTCAAATAATGCTTACATTGTCTAC 58.106 33.333 0.00 0.00 46.08 2.59
5595 8631 9.113838 CCTCAAATAATGCTTACATTGTCTACT 57.886 33.333 0.00 0.00 46.08 2.57
5619 8655 9.452287 ACTAAAAATTTAGCAATAGTAACCGGA 57.548 29.630 9.46 0.00 42.98 5.14
5620 8656 9.931210 CTAAAAATTTAGCAATAGTAACCGGAG 57.069 33.333 9.46 0.00 34.37 4.63
5633 8669 2.981302 CGGAGGTGCATCCACTCA 59.019 61.111 7.13 0.00 41.75 3.41
5634 8670 1.524002 CGGAGGTGCATCCACTCAT 59.476 57.895 7.13 0.00 41.75 2.90
5635 8671 0.752658 CGGAGGTGCATCCACTCATA 59.247 55.000 7.13 0.00 41.75 2.15
5636 8672 1.138859 CGGAGGTGCATCCACTCATAA 59.861 52.381 7.13 0.00 41.75 1.90
5637 8673 2.419990 CGGAGGTGCATCCACTCATAAA 60.420 50.000 7.13 0.00 41.75 1.40
5638 8674 3.209410 GGAGGTGCATCCACTCATAAAG 58.791 50.000 1.24 0.00 41.75 1.85
5639 8675 3.118261 GGAGGTGCATCCACTCATAAAGA 60.118 47.826 1.24 0.00 41.75 2.52
5640 8676 4.517285 GAGGTGCATCCACTCATAAAGAA 58.483 43.478 0.00 0.00 41.75 2.52
5641 8677 4.521146 AGGTGCATCCACTCATAAAGAAG 58.479 43.478 0.00 0.00 41.75 2.85
5642 8678 3.629398 GGTGCATCCACTCATAAAGAAGG 59.371 47.826 0.00 0.00 41.75 3.46
5643 8679 3.629398 GTGCATCCACTCATAAAGAAGGG 59.371 47.826 0.00 0.00 38.93 3.95
5644 8680 3.217626 GCATCCACTCATAAAGAAGGGG 58.782 50.000 0.00 0.00 0.00 4.79
5645 8681 3.372025 GCATCCACTCATAAAGAAGGGGT 60.372 47.826 0.00 0.00 0.00 4.95
5646 8682 4.202441 CATCCACTCATAAAGAAGGGGTG 58.798 47.826 0.00 0.00 0.00 4.61
5647 8683 3.256704 TCCACTCATAAAGAAGGGGTGT 58.743 45.455 0.00 0.00 0.00 4.16
5648 8684 3.655777 TCCACTCATAAAGAAGGGGTGTT 59.344 43.478 0.00 0.00 0.00 3.32
5649 8685 4.105697 TCCACTCATAAAGAAGGGGTGTTT 59.894 41.667 0.00 0.00 0.00 2.83
5650 8686 4.218417 CCACTCATAAAGAAGGGGTGTTTG 59.782 45.833 0.00 0.00 0.00 2.93
5651 8687 3.826729 ACTCATAAAGAAGGGGTGTTTGC 59.173 43.478 0.00 0.00 0.00 3.68
5652 8688 3.826157 CTCATAAAGAAGGGGTGTTTGCA 59.174 43.478 0.00 0.00 0.00 4.08
5653 8689 3.572255 TCATAAAGAAGGGGTGTTTGCAC 59.428 43.478 0.00 0.00 44.53 4.57
5654 8690 0.744281 AAAGAAGGGGTGTTTGCACG 59.256 50.000 0.00 0.00 46.13 5.34
5661 8697 3.302344 GTGTTTGCACGCCCCCAT 61.302 61.111 0.00 0.00 35.75 4.00
5662 8698 2.522923 TGTTTGCACGCCCCCATT 60.523 55.556 0.00 0.00 0.00 3.16
5663 8699 2.261361 GTTTGCACGCCCCCATTC 59.739 61.111 0.00 0.00 0.00 2.67
5664 8700 2.203552 TTTGCACGCCCCCATTCA 60.204 55.556 0.00 0.00 0.00 2.57
5665 8701 2.274645 TTTGCACGCCCCCATTCAG 61.275 57.895 0.00 0.00 0.00 3.02
5668 8704 2.589540 CACGCCCCCATTCAGCTA 59.410 61.111 0.00 0.00 0.00 3.32
5669 8705 1.524621 CACGCCCCCATTCAGCTAG 60.525 63.158 0.00 0.00 0.00 3.42
5670 8706 2.592861 CGCCCCCATTCAGCTAGC 60.593 66.667 6.62 6.62 0.00 3.42
5671 8707 2.922234 GCCCCCATTCAGCTAGCT 59.078 61.111 12.68 12.68 0.00 3.32
5672 8708 1.228094 GCCCCCATTCAGCTAGCTC 60.228 63.158 16.15 0.00 0.00 4.09
5673 8709 1.987807 GCCCCCATTCAGCTAGCTCA 61.988 60.000 16.15 0.00 0.00 4.26
5674 8710 0.769873 CCCCCATTCAGCTAGCTCAT 59.230 55.000 16.15 7.22 0.00 2.90
5675 8711 1.544982 CCCCCATTCAGCTAGCTCATG 60.545 57.143 16.15 18.79 0.00 3.07
5676 8712 1.419012 CCCCATTCAGCTAGCTCATGA 59.581 52.381 25.68 15.67 0.00 3.07
5677 8713 2.550423 CCCCATTCAGCTAGCTCATGAG 60.550 54.545 25.68 18.84 0.00 2.90
5678 8714 2.104451 CCCATTCAGCTAGCTCATGAGT 59.896 50.000 25.68 12.95 0.00 3.41
5679 8715 3.323115 CCCATTCAGCTAGCTCATGAGTA 59.677 47.826 25.68 13.21 0.00 2.59
5680 8716 4.202295 CCCATTCAGCTAGCTCATGAGTAA 60.202 45.833 25.68 11.18 0.00 2.24
5681 8717 4.749099 CCATTCAGCTAGCTCATGAGTAAC 59.251 45.833 25.68 11.08 0.00 2.50
5682 8718 5.453057 CCATTCAGCTAGCTCATGAGTAACT 60.453 44.000 25.68 14.41 0.00 2.24
5683 8719 6.239148 CCATTCAGCTAGCTCATGAGTAACTA 60.239 42.308 25.68 14.75 0.00 2.24
5684 8720 5.759506 TCAGCTAGCTCATGAGTAACTAC 57.240 43.478 23.38 6.14 0.00 2.73
5685 8721 5.193679 TCAGCTAGCTCATGAGTAACTACA 58.806 41.667 23.38 1.62 0.00 2.74
5686 8722 5.830457 TCAGCTAGCTCATGAGTAACTACAT 59.170 40.000 23.38 4.02 0.00 2.29
5687 8723 6.322456 TCAGCTAGCTCATGAGTAACTACATT 59.678 38.462 23.38 1.66 0.00 2.71
5688 8724 6.983307 CAGCTAGCTCATGAGTAACTACATTT 59.017 38.462 23.38 0.00 0.00 2.32
5689 8725 6.983307 AGCTAGCTCATGAGTAACTACATTTG 59.017 38.462 23.38 6.23 0.00 2.32
5690 8726 6.980978 GCTAGCTCATGAGTAACTACATTTGA 59.019 38.462 23.38 0.00 0.00 2.69
5691 8727 7.655328 GCTAGCTCATGAGTAACTACATTTGAT 59.345 37.037 23.38 0.00 0.00 2.57
5692 8728 9.539825 CTAGCTCATGAGTAACTACATTTGATT 57.460 33.333 23.38 0.00 0.00 2.57
5693 8729 8.430801 AGCTCATGAGTAACTACATTTGATTC 57.569 34.615 23.38 1.13 0.00 2.52
5694 8730 8.263640 AGCTCATGAGTAACTACATTTGATTCT 58.736 33.333 23.38 3.44 0.00 2.40
5695 8731 9.534565 GCTCATGAGTAACTACATTTGATTCTA 57.465 33.333 23.38 0.00 0.00 2.10
5706 8742 8.883731 ACTACATTTGATTCTATGTTACAGTGC 58.116 33.333 9.28 0.00 36.46 4.40
5707 8743 7.928307 ACATTTGATTCTATGTTACAGTGCT 57.072 32.000 0.00 0.00 31.14 4.40
5708 8744 8.340618 ACATTTGATTCTATGTTACAGTGCTT 57.659 30.769 0.00 0.00 31.14 3.91
5709 8745 9.448438 ACATTTGATTCTATGTTACAGTGCTTA 57.552 29.630 0.00 0.00 31.14 3.09
5722 8758 9.767228 TGTTACAGTGCTTAATACTAAAACTGA 57.233 29.630 11.38 0.00 36.34 3.41
5725 8761 7.807680 ACAGTGCTTAATACTAAAACTGAAGC 58.192 34.615 11.38 0.00 36.34 3.86
5726 8762 7.094762 ACAGTGCTTAATACTAAAACTGAAGCC 60.095 37.037 11.38 0.00 37.59 4.35
5727 8763 6.092259 AGTGCTTAATACTAAAACTGAAGCCG 59.908 38.462 0.00 0.00 37.59 5.52
5728 8764 5.935789 TGCTTAATACTAAAACTGAAGCCGT 59.064 36.000 0.00 0.00 37.59 5.68
5729 8765 6.091713 TGCTTAATACTAAAACTGAAGCCGTC 59.908 38.462 0.00 0.00 37.59 4.79
5730 8766 6.091713 GCTTAATACTAAAACTGAAGCCGTCA 59.908 38.462 0.00 0.00 33.38 4.35
5731 8767 5.857822 AATACTAAAACTGAAGCCGTCAC 57.142 39.130 0.00 0.00 31.13 3.67
5732 8768 2.490991 ACTAAAACTGAAGCCGTCACC 58.509 47.619 0.00 0.00 31.13 4.02
5733 8769 2.158871 ACTAAAACTGAAGCCGTCACCA 60.159 45.455 0.00 0.00 31.13 4.17
5734 8770 1.981256 AAAACTGAAGCCGTCACCAT 58.019 45.000 0.00 0.00 31.13 3.55
5735 8771 2.851263 AAACTGAAGCCGTCACCATA 57.149 45.000 0.00 0.00 31.13 2.74
5736 8772 2.386661 AACTGAAGCCGTCACCATAG 57.613 50.000 0.00 0.00 31.13 2.23
5737 8773 1.557099 ACTGAAGCCGTCACCATAGA 58.443 50.000 0.00 0.00 31.13 1.98
5738 8774 1.899814 ACTGAAGCCGTCACCATAGAA 59.100 47.619 0.00 0.00 31.13 2.10
5739 8775 2.501723 ACTGAAGCCGTCACCATAGAAT 59.498 45.455 0.00 0.00 31.13 2.40
5740 8776 2.868583 CTGAAGCCGTCACCATAGAATG 59.131 50.000 0.00 0.00 31.13 2.67
5741 8777 2.236146 TGAAGCCGTCACCATAGAATGT 59.764 45.455 0.00 0.00 0.00 2.71
5742 8778 2.604046 AGCCGTCACCATAGAATGTC 57.396 50.000 0.00 0.00 0.00 3.06
5743 8779 1.139058 AGCCGTCACCATAGAATGTCC 59.861 52.381 0.00 0.00 0.00 4.02
5744 8780 1.810412 GCCGTCACCATAGAATGTCCC 60.810 57.143 0.00 0.00 0.00 4.46
5745 8781 1.762957 CCGTCACCATAGAATGTCCCT 59.237 52.381 0.00 0.00 0.00 4.20
5746 8782 2.224066 CCGTCACCATAGAATGTCCCTC 60.224 54.545 0.00 0.00 0.00 4.30
5747 8783 2.430694 CGTCACCATAGAATGTCCCTCA 59.569 50.000 0.00 0.00 0.00 3.86
5748 8784 3.070159 CGTCACCATAGAATGTCCCTCAT 59.930 47.826 0.00 0.00 38.57 2.90
5761 8797 5.474578 TGTCCCTCATTCAGATGTATAGC 57.525 43.478 0.00 0.00 34.77 2.97
5762 8798 4.901250 TGTCCCTCATTCAGATGTATAGCA 59.099 41.667 0.00 0.00 34.77 3.49
5763 8799 5.545335 TGTCCCTCATTCAGATGTATAGCAT 59.455 40.000 0.00 0.00 41.24 3.79
5764 8800 7.581076 ATGTCCCTCATTCAGATGTATAGCATC 60.581 40.741 7.02 7.02 42.78 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.622166 ACCTTAAACCCATACACCTCG 57.378 47.619 0.00 0.00 0.00 4.63
2 3 6.659745 AAAAACCTTAAACCCATACACCTC 57.340 37.500 0.00 0.00 0.00 3.85
23 24 4.541705 TGGATTGGGTGAAGTCTGAAAAA 58.458 39.130 0.00 0.00 0.00 1.94
24 25 4.141274 TCTGGATTGGGTGAAGTCTGAAAA 60.141 41.667 0.00 0.00 0.00 2.29
25 26 3.394274 TCTGGATTGGGTGAAGTCTGAAA 59.606 43.478 0.00 0.00 0.00 2.69
26 27 2.978978 TCTGGATTGGGTGAAGTCTGAA 59.021 45.455 0.00 0.00 0.00 3.02
27 28 2.568956 CTCTGGATTGGGTGAAGTCTGA 59.431 50.000 0.00 0.00 0.00 3.27
28 29 2.568956 TCTCTGGATTGGGTGAAGTCTG 59.431 50.000 0.00 0.00 0.00 3.51
29 30 2.836981 CTCTCTGGATTGGGTGAAGTCT 59.163 50.000 0.00 0.00 0.00 3.24
30 31 2.834549 TCTCTCTGGATTGGGTGAAGTC 59.165 50.000 0.00 0.00 0.00 3.01
31 32 2.569404 GTCTCTCTGGATTGGGTGAAGT 59.431 50.000 0.00 0.00 0.00 3.01
32 33 2.568956 TGTCTCTCTGGATTGGGTGAAG 59.431 50.000 0.00 0.00 0.00 3.02
33 34 2.619931 TGTCTCTCTGGATTGGGTGAA 58.380 47.619 0.00 0.00 0.00 3.18
34 35 2.303022 GTTGTCTCTCTGGATTGGGTGA 59.697 50.000 0.00 0.00 0.00 4.02
35 36 2.704572 GTTGTCTCTCTGGATTGGGTG 58.295 52.381 0.00 0.00 0.00 4.61
36 37 1.276421 CGTTGTCTCTCTGGATTGGGT 59.724 52.381 0.00 0.00 0.00 4.51
37 38 1.550524 TCGTTGTCTCTCTGGATTGGG 59.449 52.381 0.00 0.00 0.00 4.12
38 39 2.493675 TCTCGTTGTCTCTCTGGATTGG 59.506 50.000 0.00 0.00 0.00 3.16
39 40 3.768406 CTCTCGTTGTCTCTCTGGATTG 58.232 50.000 0.00 0.00 0.00 2.67
40 41 2.165437 GCTCTCGTTGTCTCTCTGGATT 59.835 50.000 0.00 0.00 0.00 3.01
41 42 1.748493 GCTCTCGTTGTCTCTCTGGAT 59.252 52.381 0.00 0.00 0.00 3.41
42 43 1.169577 GCTCTCGTTGTCTCTCTGGA 58.830 55.000 0.00 0.00 0.00 3.86
43 44 0.179176 CGCTCTCGTTGTCTCTCTGG 60.179 60.000 0.00 0.00 0.00 3.86
44 45 0.796491 GCGCTCTCGTTGTCTCTCTG 60.796 60.000 0.00 0.00 38.14 3.35
45 46 1.504446 GCGCTCTCGTTGTCTCTCT 59.496 57.895 0.00 0.00 38.14 3.10
46 47 1.865622 CGCGCTCTCGTTGTCTCTC 60.866 63.158 5.56 0.00 38.14 3.20
47 48 2.177038 CGCGCTCTCGTTGTCTCT 59.823 61.111 5.56 0.00 38.14 3.10
75 76 2.811317 GCGCGTTGTCTCTCCTGG 60.811 66.667 8.43 0.00 0.00 4.45
128 129 1.688197 CTTGGGCAGAAATGTTGGTGT 59.312 47.619 0.00 0.00 0.00 4.16
152 153 1.594331 GAATAGAATGCCACCGGACC 58.406 55.000 9.46 0.00 0.00 4.46
874 875 1.156322 AAGGTGGAGGAGGAGGAGGA 61.156 60.000 0.00 0.00 0.00 3.71
875 876 0.252927 AAAGGTGGAGGAGGAGGAGG 60.253 60.000 0.00 0.00 0.00 4.30
889 890 0.618981 GGAGTCGAATGGGGAAAGGT 59.381 55.000 0.00 0.00 0.00 3.50
1524 1548 4.802563 CCATATCCGTCATCATCTTCATCG 59.197 45.833 0.00 0.00 0.00 3.84
1533 1557 0.319813 CGCAGCCATATCCGTCATCA 60.320 55.000 0.00 0.00 0.00 3.07
1601 1625 6.461788 CCACAATAGAACTAGGAGTAGGAAGC 60.462 46.154 0.00 0.00 0.00 3.86
1631 1656 3.181503 GGCTGTGAGATGCAAACATACTG 60.182 47.826 0.00 0.00 36.35 2.74
1659 1684 3.806949 TTCAATGGGAGTAAAGCCTGT 57.193 42.857 0.00 0.00 0.00 4.00
1700 1725 8.497745 ACACTTCAGGGATAATAAGATTGTGAT 58.502 33.333 0.00 0.00 0.00 3.06
1701 1726 7.861629 ACACTTCAGGGATAATAAGATTGTGA 58.138 34.615 0.00 0.00 0.00 3.58
1702 1727 7.989741 AGACACTTCAGGGATAATAAGATTGTG 59.010 37.037 0.00 0.00 0.00 3.33
1840 1866 7.714377 AGAGAAGAGCAAAGTATTATGTCATGG 59.286 37.037 0.00 0.00 0.00 3.66
1843 1869 8.314021 TCAAGAGAAGAGCAAAGTATTATGTCA 58.686 33.333 0.00 0.00 0.00 3.58
1844 1870 8.709386 TCAAGAGAAGAGCAAAGTATTATGTC 57.291 34.615 0.00 0.00 0.00 3.06
2177 2203 6.656632 TCCATAAAACAAAAGCATGTACCA 57.343 33.333 0.00 0.00 32.02 3.25
2428 2456 1.267533 TCAACACATCACAGCACATGC 59.732 47.619 0.00 0.00 42.49 4.06
2432 2460 2.287188 CCAACTCAACACATCACAGCAC 60.287 50.000 0.00 0.00 0.00 4.40
2472 2501 0.109132 CACATCGGAAAGCCCAAAGC 60.109 55.000 0.00 0.00 44.25 3.51
2473 2502 0.109132 GCACATCGGAAAGCCCAAAG 60.109 55.000 0.00 0.00 34.14 2.77
2474 2503 0.539438 AGCACATCGGAAAGCCCAAA 60.539 50.000 0.00 0.00 34.14 3.28
2475 2504 0.539438 AAGCACATCGGAAAGCCCAA 60.539 50.000 0.00 0.00 34.14 4.12
2476 2505 0.539438 AAAGCACATCGGAAAGCCCA 60.539 50.000 0.00 0.00 34.14 5.36
2477 2506 0.171231 GAAAGCACATCGGAAAGCCC 59.829 55.000 0.00 0.00 0.00 5.19
2478 2507 1.168714 AGAAAGCACATCGGAAAGCC 58.831 50.000 0.00 0.00 0.00 4.35
2479 2508 2.982470 CAAAGAAAGCACATCGGAAAGC 59.018 45.455 0.00 0.00 0.00 3.51
2537 2566 6.151144 GTGCAATATCCACTAACCAAAGAACT 59.849 38.462 0.00 0.00 0.00 3.01
2554 2583 9.123902 TCTAGCAAATAACAAGATGTGCAATAT 57.876 29.630 1.66 0.00 41.78 1.28
2598 2630 7.165485 TCAGACGGAATAAAGATCCAAAGAAA 58.835 34.615 0.00 0.00 36.74 2.52
2618 2650 8.688151 AGAACTATTACTCACTGGTTATCAGAC 58.312 37.037 0.00 0.00 46.18 3.51
2721 2753 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2725 2757 6.097915 TCCATATCCGAGACAAGTAATTCC 57.902 41.667 0.00 0.00 0.00 3.01
2726 2758 7.155328 ACATCCATATCCGAGACAAGTAATTC 58.845 38.462 0.00 0.00 0.00 2.17
2729 2761 7.670140 AGATACATCCATATCCGAGACAAGTAA 59.330 37.037 0.00 0.00 32.76 2.24
2732 2764 6.522625 AGATACATCCATATCCGAGACAAG 57.477 41.667 0.00 0.00 32.76 3.16
2733 2765 7.402862 TCTAGATACATCCATATCCGAGACAA 58.597 38.462 0.00 0.00 32.76 3.18
2734 2766 6.958767 TCTAGATACATCCATATCCGAGACA 58.041 40.000 0.00 0.00 32.76 3.41
2745 2799 9.570468 AGACGTATTTAGTTCTAGATACATCCA 57.430 33.333 15.69 0.00 0.00 3.41
2763 2817 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
2764 2818 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
2766 2820 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
2767 2821 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
2769 2823 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
2770 2824 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
2772 2826 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
2773 2827 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
2775 2829 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
2777 2831 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
2778 2832 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
2779 2833 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
2780 2834 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
2782 2836 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2783 2837 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2784 2838 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2786 2840 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2788 2842 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
2789 2843 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
2790 2844 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2791 2845 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2792 2846 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2793 2847 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2794 2848 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2795 2849 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2796 2850 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2797 2851 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
2798 2852 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
2800 2854 2.734755 TTATACTCCCTCCGTTCGGA 57.265 50.000 13.34 13.34 0.00 4.55
2801 2855 3.806625 TTTTATACTCCCTCCGTTCGG 57.193 47.619 4.74 4.74 0.00 4.30
2802 2856 6.921914 AGATATTTTATACTCCCTCCGTTCG 58.078 40.000 0.00 0.00 0.00 3.95
2803 2857 7.967303 CGTAGATATTTTATACTCCCTCCGTTC 59.033 40.741 0.00 0.00 0.00 3.95
2804 2858 7.576477 GCGTAGATATTTTATACTCCCTCCGTT 60.576 40.741 0.00 0.00 0.00 4.44
2806 2860 6.264088 GCGTAGATATTTTATACTCCCTCCG 58.736 44.000 0.00 0.00 0.00 4.63
2839 2927 8.716646 AATAATTTTAAAGGCATGGTTAGCAC 57.283 30.769 0.00 0.00 0.00 4.40
2946 3035 5.555017 CCATTAGGGAACTGTAGATCCATG 58.445 45.833 9.94 5.59 43.88 3.66
3162 3251 1.707427 AGGAGAAGCTCACAACCCATT 59.293 47.619 0.00 0.00 31.08 3.16
3220 3309 5.622180 TCCTCTACATACGACTAGCAGAAT 58.378 41.667 0.00 0.00 0.00 2.40
3401 3490 6.401047 AATGAAAGATAGGACGAATACGGA 57.599 37.500 0.00 0.00 44.46 4.69
3556 3645 7.576403 AGTAAGGTTGAAGGTTAACAAAGGTA 58.424 34.615 8.10 0.00 0.00 3.08
4028 4209 8.518430 AAGCAAACATTTAACAAAATCCCTTT 57.482 26.923 0.00 0.00 0.00 3.11
4060 4241 3.206964 GGAGTACTAAAATGAGCCAGCC 58.793 50.000 0.00 0.00 0.00 4.85
4084 4265 1.673626 GCCACAAGTAATTCCGGACGA 60.674 52.381 1.83 0.00 0.00 4.20
4147 4338 6.371825 GTCCGGAAATACTTGTCAGAGAAATT 59.628 38.462 5.23 0.00 0.00 1.82
4155 4346 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4172 4363 3.065925 CCGTAGTTTTAGTACTCCCTCCG 59.934 52.174 0.00 0.00 0.00 4.63
4236 4427 1.709578 AGCAGTCTCTTGGTCACTCA 58.290 50.000 0.00 0.00 0.00 3.41
4237 4428 3.843999 CTTAGCAGTCTCTTGGTCACTC 58.156 50.000 0.00 0.00 0.00 3.51
4306 6459 0.984230 CCCCAGCACAGAGGACTTAA 59.016 55.000 0.00 0.00 0.00 1.85
4307 6460 0.909610 CCCCCAGCACAGAGGACTTA 60.910 60.000 0.00 0.00 0.00 2.24
4507 6660 5.312079 ACAGAAAGAGCAGTAAAAGCTGAT 58.688 37.500 0.00 0.00 43.58 2.90
4611 6764 7.948447 TGCCATATATAGGTGTACAGTTAGAGT 59.052 37.037 0.00 0.00 0.00 3.24
4620 6773 6.349300 CCCAATCTGCCATATATAGGTGTAC 58.651 44.000 0.00 0.00 0.00 2.90
4621 6774 5.104527 GCCCAATCTGCCATATATAGGTGTA 60.105 44.000 0.00 0.00 0.00 2.90
4622 6775 4.324563 GCCCAATCTGCCATATATAGGTGT 60.325 45.833 0.00 0.00 0.00 4.16
4659 6813 1.071471 AGAACTGCCCACTTGACCG 59.929 57.895 0.00 0.00 0.00 4.79
4894 7053 5.738619 TTGCTAAGTCAAGACACTATGGA 57.261 39.130 2.72 0.00 0.00 3.41
4901 7060 4.213270 CGGTTGATTTGCTAAGTCAAGACA 59.787 41.667 2.72 0.00 32.98 3.41
4941 7100 0.900647 CACCAGTCTCTTCGGGTCCT 60.901 60.000 0.00 0.00 33.95 3.85
4943 7102 0.966920 TTCACCAGTCTCTTCGGGTC 59.033 55.000 0.00 0.00 33.95 4.46
4964 7138 3.994392 GGAAGTGCTTGAACTCGTGATTA 59.006 43.478 0.00 0.00 0.00 1.75
5024 7198 3.752704 GCCACCTTACAAACGGCA 58.247 55.556 0.00 0.00 42.50 5.69
5045 7219 1.985473 TGCAGTCCACAAGCATTTCT 58.015 45.000 0.00 0.00 32.55 2.52
5064 7238 6.682113 GCCAATCTTCTTTGCATGACACATAT 60.682 38.462 0.00 0.00 0.00 1.78
5135 7309 3.500680 GTGGAGACAAAAATCCAGCGTAA 59.499 43.478 0.00 0.00 46.09 3.18
5220 7394 2.952310 ACAAGAGTGCAGGGAGAAAAAC 59.048 45.455 0.00 0.00 0.00 2.43
5262 7436 7.230712 CCACCAAAGTACTCCAATTCTTTAGTT 59.769 37.037 0.00 0.00 0.00 2.24
5271 7445 4.141251 ACAGTTCCACCAAAGTACTCCAAT 60.141 41.667 0.00 0.00 0.00 3.16
5276 7450 4.497291 TTGACAGTTCCACCAAAGTACT 57.503 40.909 0.00 0.00 0.00 2.73
5280 7454 6.824305 ATAGATTTGACAGTTCCACCAAAG 57.176 37.500 0.00 0.00 32.87 2.77
5281 7455 7.004086 AGAATAGATTTGACAGTTCCACCAAA 58.996 34.615 0.00 0.00 33.72 3.28
5282 7456 6.430925 CAGAATAGATTTGACAGTTCCACCAA 59.569 38.462 0.00 0.00 0.00 3.67
5284 7458 5.163713 GCAGAATAGATTTGACAGTTCCACC 60.164 44.000 0.00 0.00 0.00 4.61
5285 7459 5.163713 GGCAGAATAGATTTGACAGTTCCAC 60.164 44.000 0.00 0.00 0.00 4.02
5288 7462 6.549952 CAAGGCAGAATAGATTTGACAGTTC 58.450 40.000 0.00 0.00 0.00 3.01
5294 7475 4.240881 AGGCAAGGCAGAATAGATTTGA 57.759 40.909 0.00 0.00 0.00 2.69
5357 7604 8.539770 TCTAATTTTAGTGCAAGAGACTTGAG 57.460 34.615 14.44 0.88 32.61 3.02
5369 7616 6.016610 TGTGTTCAACCCTCTAATTTTAGTGC 60.017 38.462 0.00 0.00 32.61 4.40
5370 7617 7.504924 TGTGTTCAACCCTCTAATTTTAGTG 57.495 36.000 0.00 0.00 32.61 2.74
5418 8454 0.322456 GTAGCTGGCACCACATCCAA 60.322 55.000 0.00 0.00 30.98 3.53
5460 8496 1.467920 AAGTATGCAGCAGGAAAGCC 58.532 50.000 0.00 0.00 34.23 4.35
5533 8569 5.467035 CCATGAAGGCCTTTCTGTAAAAA 57.533 39.130 21.54 0.00 36.71 1.94
5547 8583 6.064717 AGGTTAATAAAGCTAGCCATGAAGG 58.935 40.000 12.13 0.00 41.57 3.46
5548 8584 6.767902 TGAGGTTAATAAAGCTAGCCATGAAG 59.232 38.462 12.13 0.00 43.36 3.02
5549 8585 6.658849 TGAGGTTAATAAAGCTAGCCATGAA 58.341 36.000 12.13 0.00 43.36 2.57
5550 8586 6.247229 TGAGGTTAATAAAGCTAGCCATGA 57.753 37.500 12.13 0.00 43.36 3.07
5551 8587 6.942532 TTGAGGTTAATAAAGCTAGCCATG 57.057 37.500 12.13 0.00 43.36 3.66
5552 8588 9.640952 TTATTTGAGGTTAATAAAGCTAGCCAT 57.359 29.630 12.13 2.74 43.36 4.40
5553 8589 9.640952 ATTATTTGAGGTTAATAAAGCTAGCCA 57.359 29.630 12.13 0.00 43.36 4.75
5554 8590 9.899226 CATTATTTGAGGTTAATAAAGCTAGCC 57.101 33.333 12.13 0.00 43.36 3.93
5555 8591 9.399403 GCATTATTTGAGGTTAATAAAGCTAGC 57.601 33.333 6.62 6.62 43.36 3.42
5566 8602 9.461312 AGACAATGTAAGCATTATTTGAGGTTA 57.539 29.630 0.00 0.00 42.91 2.85
5567 8603 8.353423 AGACAATGTAAGCATTATTTGAGGTT 57.647 30.769 0.00 0.00 42.91 3.50
5568 8604 7.944729 AGACAATGTAAGCATTATTTGAGGT 57.055 32.000 0.00 0.00 42.91 3.85
5569 8605 9.113838 AGTAGACAATGTAAGCATTATTTGAGG 57.886 33.333 0.00 0.00 42.91 3.86
5593 8629 9.452287 TCCGGTTACTATTGCTAAATTTTTAGT 57.548 29.630 0.00 0.28 41.63 2.24
5594 8630 9.931210 CTCCGGTTACTATTGCTAAATTTTTAG 57.069 33.333 0.00 5.83 42.30 1.85
5595 8631 8.895737 CCTCCGGTTACTATTGCTAAATTTTTA 58.104 33.333 0.00 0.00 0.00 1.52
5596 8632 7.395206 ACCTCCGGTTACTATTGCTAAATTTTT 59.605 33.333 0.00 0.00 27.29 1.94
5597 8633 6.888088 ACCTCCGGTTACTATTGCTAAATTTT 59.112 34.615 0.00 0.00 27.29 1.82
5598 8634 6.317893 CACCTCCGGTTACTATTGCTAAATTT 59.682 38.462 0.00 0.00 31.02 1.82
5599 8635 5.820947 CACCTCCGGTTACTATTGCTAAATT 59.179 40.000 0.00 0.00 31.02 1.82
5600 8636 5.365619 CACCTCCGGTTACTATTGCTAAAT 58.634 41.667 0.00 0.00 31.02 1.40
5601 8637 4.761975 CACCTCCGGTTACTATTGCTAAA 58.238 43.478 0.00 0.00 31.02 1.85
5602 8638 3.431207 GCACCTCCGGTTACTATTGCTAA 60.431 47.826 0.00 0.00 31.02 3.09
5603 8639 2.101917 GCACCTCCGGTTACTATTGCTA 59.898 50.000 0.00 0.00 31.02 3.49
5604 8640 1.134491 GCACCTCCGGTTACTATTGCT 60.134 52.381 0.00 0.00 31.02 3.91
5605 8641 1.296727 GCACCTCCGGTTACTATTGC 58.703 55.000 0.00 0.00 31.02 3.56
5606 8642 2.684001 TGCACCTCCGGTTACTATTG 57.316 50.000 0.00 0.00 31.02 1.90
5607 8643 2.104281 GGATGCACCTCCGGTTACTATT 59.896 50.000 0.00 0.00 31.02 1.73
5608 8644 1.692519 GGATGCACCTCCGGTTACTAT 59.307 52.381 0.00 0.00 31.02 2.12
5609 8645 1.117150 GGATGCACCTCCGGTTACTA 58.883 55.000 0.00 0.00 31.02 1.82
5610 8646 0.907704 TGGATGCACCTCCGGTTACT 60.908 55.000 0.00 0.00 38.21 2.24
5611 8647 0.743345 GTGGATGCACCTCCGGTTAC 60.743 60.000 5.98 0.00 38.21 2.50
5612 8648 0.907704 AGTGGATGCACCTCCGGTTA 60.908 55.000 14.38 0.00 38.21 2.85
5613 8649 2.185310 GAGTGGATGCACCTCCGGTT 62.185 60.000 14.38 0.00 38.21 4.44
5614 8650 2.607750 AGTGGATGCACCTCCGGT 60.608 61.111 14.38 0.00 38.21 5.28
5615 8651 1.976132 ATGAGTGGATGCACCTCCGG 61.976 60.000 14.38 0.00 38.21 5.14
5616 8652 0.752658 TATGAGTGGATGCACCTCCG 59.247 55.000 14.38 0.00 38.21 4.63
5617 8653 3.118261 TCTTTATGAGTGGATGCACCTCC 60.118 47.826 14.38 4.49 39.86 4.30
5618 8654 4.142609 TCTTTATGAGTGGATGCACCTC 57.857 45.455 14.38 11.14 39.86 3.85
5619 8655 4.521146 CTTCTTTATGAGTGGATGCACCT 58.479 43.478 14.38 1.20 39.86 4.00
5620 8656 3.629398 CCTTCTTTATGAGTGGATGCACC 59.371 47.826 14.38 6.32 39.54 5.01
5621 8657 3.629398 CCCTTCTTTATGAGTGGATGCAC 59.371 47.826 9.70 9.70 0.00 4.57
5622 8658 3.371917 CCCCTTCTTTATGAGTGGATGCA 60.372 47.826 0.00 0.00 0.00 3.96
5623 8659 3.217626 CCCCTTCTTTATGAGTGGATGC 58.782 50.000 0.00 0.00 0.00 3.91
5624 8660 4.202441 CACCCCTTCTTTATGAGTGGATG 58.798 47.826 0.00 0.00 0.00 3.51
5625 8661 3.852578 ACACCCCTTCTTTATGAGTGGAT 59.147 43.478 0.00 0.00 0.00 3.41
5626 8662 3.256704 ACACCCCTTCTTTATGAGTGGA 58.743 45.455 0.00 0.00 0.00 4.02
5627 8663 3.721087 ACACCCCTTCTTTATGAGTGG 57.279 47.619 0.00 0.00 0.00 4.00
5628 8664 4.321230 GCAAACACCCCTTCTTTATGAGTG 60.321 45.833 0.00 0.00 0.00 3.51
5629 8665 3.826729 GCAAACACCCCTTCTTTATGAGT 59.173 43.478 0.00 0.00 0.00 3.41
5630 8666 3.826157 TGCAAACACCCCTTCTTTATGAG 59.174 43.478 0.00 0.00 0.00 2.90
5631 8667 3.572255 GTGCAAACACCCCTTCTTTATGA 59.428 43.478 0.00 0.00 41.21 2.15
5632 8668 3.611530 CGTGCAAACACCCCTTCTTTATG 60.612 47.826 0.00 0.00 44.40 1.90
5633 8669 2.556622 CGTGCAAACACCCCTTCTTTAT 59.443 45.455 0.00 0.00 44.40 1.40
5634 8670 1.950909 CGTGCAAACACCCCTTCTTTA 59.049 47.619 0.00 0.00 44.40 1.85
5635 8671 0.744281 CGTGCAAACACCCCTTCTTT 59.256 50.000 0.00 0.00 44.40 2.52
5636 8672 1.734388 GCGTGCAAACACCCCTTCTT 61.734 55.000 0.00 0.00 44.40 2.52
5637 8673 2.193536 GCGTGCAAACACCCCTTCT 61.194 57.895 0.00 0.00 44.40 2.85
5638 8674 2.335011 GCGTGCAAACACCCCTTC 59.665 61.111 0.00 0.00 44.40 3.46
5639 8675 3.223589 GGCGTGCAAACACCCCTT 61.224 61.111 0.00 0.00 44.40 3.95
5644 8680 2.763627 GAATGGGGGCGTGCAAACAC 62.764 60.000 0.00 0.00 43.76 3.32
5645 8681 2.522923 AATGGGGGCGTGCAAACA 60.523 55.556 0.00 0.00 0.00 2.83
5646 8682 2.261361 GAATGGGGGCGTGCAAAC 59.739 61.111 0.00 0.00 0.00 2.93
5647 8683 2.203552 TGAATGGGGGCGTGCAAA 60.204 55.556 0.00 0.00 0.00 3.68
5648 8684 2.676121 CTGAATGGGGGCGTGCAA 60.676 61.111 0.00 0.00 0.00 4.08
5650 8686 3.697439 TAGCTGAATGGGGGCGTGC 62.697 63.158 0.00 0.00 0.00 5.34
5651 8687 1.524621 CTAGCTGAATGGGGGCGTG 60.525 63.158 0.00 0.00 0.00 5.34
5652 8688 2.911143 CTAGCTGAATGGGGGCGT 59.089 61.111 0.00 0.00 0.00 5.68
5653 8689 2.592861 GCTAGCTGAATGGGGGCG 60.593 66.667 7.70 0.00 0.00 6.13
5654 8690 1.228094 GAGCTAGCTGAATGGGGGC 60.228 63.158 24.99 0.00 0.00 5.80
5655 8691 0.769873 ATGAGCTAGCTGAATGGGGG 59.230 55.000 24.99 0.00 0.00 5.40
5656 8692 1.419012 TCATGAGCTAGCTGAATGGGG 59.581 52.381 24.99 4.44 0.00 4.96
5657 8693 2.104451 ACTCATGAGCTAGCTGAATGGG 59.896 50.000 24.99 25.24 0.00 4.00
5658 8694 3.472283 ACTCATGAGCTAGCTGAATGG 57.528 47.619 24.99 18.88 0.00 3.16
5659 8695 5.599732 AGTTACTCATGAGCTAGCTGAATG 58.400 41.667 24.99 23.54 0.00 2.67
5660 8696 5.867903 AGTTACTCATGAGCTAGCTGAAT 57.132 39.130 24.99 12.89 0.00 2.57
5661 8697 5.652452 TGTAGTTACTCATGAGCTAGCTGAA 59.348 40.000 24.99 10.86 0.00 3.02
5662 8698 5.193679 TGTAGTTACTCATGAGCTAGCTGA 58.806 41.667 24.99 15.84 0.00 4.26
5663 8699 5.506686 TGTAGTTACTCATGAGCTAGCTG 57.493 43.478 24.99 9.94 0.00 4.24
5664 8700 6.723298 AATGTAGTTACTCATGAGCTAGCT 57.277 37.500 22.83 19.45 0.00 3.32
5665 8701 6.980978 TCAAATGTAGTTACTCATGAGCTAGC 59.019 38.462 22.83 6.62 0.00 3.42
5666 8702 9.539825 AATCAAATGTAGTTACTCATGAGCTAG 57.460 33.333 22.83 0.00 0.00 3.42
5667 8703 9.534565 GAATCAAATGTAGTTACTCATGAGCTA 57.465 33.333 22.83 12.83 0.00 3.32
5668 8704 8.263640 AGAATCAAATGTAGTTACTCATGAGCT 58.736 33.333 22.83 13.83 0.00 4.09
5669 8705 8.430801 AGAATCAAATGTAGTTACTCATGAGC 57.569 34.615 22.83 6.67 0.00 4.26
5680 8716 8.883731 GCACTGTAACATAGAATCAAATGTAGT 58.116 33.333 2.40 1.04 35.30 2.73
5681 8717 9.102757 AGCACTGTAACATAGAATCAAATGTAG 57.897 33.333 2.40 0.54 35.30 2.74
5682 8718 9.448438 AAGCACTGTAACATAGAATCAAATGTA 57.552 29.630 2.40 0.00 35.30 2.29
5683 8719 7.928307 AGCACTGTAACATAGAATCAAATGT 57.072 32.000 0.00 0.00 37.94 2.71
5696 8732 9.767228 TCAGTTTTAGTATTAAGCACTGTAACA 57.233 29.630 14.14 0.00 35.46 2.41
5699 8735 8.932791 GCTTCAGTTTTAGTATTAAGCACTGTA 58.067 33.333 14.14 8.01 38.15 2.74
5700 8736 7.094762 GGCTTCAGTTTTAGTATTAAGCACTGT 60.095 37.037 14.14 0.00 39.60 3.55
5701 8737 7.244192 GGCTTCAGTTTTAGTATTAAGCACTG 58.756 38.462 0.00 10.72 39.60 3.66
5702 8738 6.092259 CGGCTTCAGTTTTAGTATTAAGCACT 59.908 38.462 0.00 0.00 39.60 4.40
5703 8739 6.128363 ACGGCTTCAGTTTTAGTATTAAGCAC 60.128 38.462 0.00 0.00 39.60 4.40
5704 8740 5.935789 ACGGCTTCAGTTTTAGTATTAAGCA 59.064 36.000 0.00 0.00 39.60 3.91
5705 8741 6.091713 TGACGGCTTCAGTTTTAGTATTAAGC 59.908 38.462 0.00 0.00 37.67 3.09
5706 8742 7.412672 GGTGACGGCTTCAGTTTTAGTATTAAG 60.413 40.741 0.00 0.00 33.71 1.85
5707 8743 6.369615 GGTGACGGCTTCAGTTTTAGTATTAA 59.630 38.462 0.00 0.00 33.71 1.40
5708 8744 5.870978 GGTGACGGCTTCAGTTTTAGTATTA 59.129 40.000 0.00 0.00 33.71 0.98
5709 8745 4.694037 GGTGACGGCTTCAGTTTTAGTATT 59.306 41.667 0.00 0.00 33.71 1.89
5710 8746 4.251268 GGTGACGGCTTCAGTTTTAGTAT 58.749 43.478 0.00 0.00 33.71 2.12
5711 8747 3.069872 TGGTGACGGCTTCAGTTTTAGTA 59.930 43.478 0.00 0.00 33.71 1.82
5712 8748 2.158871 TGGTGACGGCTTCAGTTTTAGT 60.159 45.455 0.00 0.00 33.71 2.24
5713 8749 2.489971 TGGTGACGGCTTCAGTTTTAG 58.510 47.619 0.00 0.00 33.71 1.85
5714 8750 2.623878 TGGTGACGGCTTCAGTTTTA 57.376 45.000 0.00 0.00 33.71 1.52
5715 8751 1.981256 ATGGTGACGGCTTCAGTTTT 58.019 45.000 0.00 0.00 33.71 2.43
5716 8752 2.301870 TCTATGGTGACGGCTTCAGTTT 59.698 45.455 0.00 0.00 33.71 2.66
5717 8753 1.899814 TCTATGGTGACGGCTTCAGTT 59.100 47.619 0.00 0.00 33.71 3.16
5718 8754 1.557099 TCTATGGTGACGGCTTCAGT 58.443 50.000 0.00 0.00 33.71 3.41
5719 8755 2.672961 TTCTATGGTGACGGCTTCAG 57.327 50.000 0.00 0.00 33.71 3.02
5720 8756 2.236146 ACATTCTATGGTGACGGCTTCA 59.764 45.455 0.00 0.00 33.60 3.02
5721 8757 2.866762 GACATTCTATGGTGACGGCTTC 59.133 50.000 0.00 0.00 33.60 3.86
5722 8758 2.420129 GGACATTCTATGGTGACGGCTT 60.420 50.000 0.00 0.00 33.60 4.35
5723 8759 1.139058 GGACATTCTATGGTGACGGCT 59.861 52.381 0.00 0.00 33.60 5.52
5724 8760 1.583054 GGACATTCTATGGTGACGGC 58.417 55.000 0.00 0.00 33.60 5.68
5725 8761 1.762957 AGGGACATTCTATGGTGACGG 59.237 52.381 0.00 0.00 33.60 4.79
5726 8762 2.430694 TGAGGGACATTCTATGGTGACG 59.569 50.000 0.00 0.00 33.60 4.35
5727 8763 4.696479 ATGAGGGACATTCTATGGTGAC 57.304 45.455 0.00 0.00 35.45 3.67
5737 8773 7.256944 ATGCTATACATCTGAATGAGGGACATT 60.257 37.037 0.00 0.00 42.70 2.71
5738 8774 5.545335 TGCTATACATCTGAATGAGGGACAT 59.455 40.000 0.00 0.00 41.45 3.06
5739 8775 4.901250 TGCTATACATCTGAATGAGGGACA 59.099 41.667 0.00 0.00 36.67 4.02
5740 8776 5.474578 TGCTATACATCTGAATGAGGGAC 57.525 43.478 0.00 0.00 36.67 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.