Multiple sequence alignment - TraesCS3A01G281700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G281700 chr3A 100.000 8283 0 0 1 8283 510589234 510597516 0.000000e+00 15296.0
1 TraesCS3A01G281700 chr3A 87.500 168 15 5 7509 7673 7278090 7278254 1.100000e-43 189.0
2 TraesCS3A01G281700 chr3A 95.082 61 2 1 6686 6745 659015500 659015440 2.460000e-15 95.3
3 TraesCS3A01G281700 chr3A 90.909 44 2 2 6614 6656 329061380 329061422 3.230000e-04 58.4
4 TraesCS3A01G281700 chr3A 97.059 34 1 0 6623 6656 746355802 746355835 3.230000e-04 58.4
5 TraesCS3A01G281700 chr3B 94.308 3795 118 31 419 4151 507269004 507272762 0.000000e+00 5722.0
6 TraesCS3A01G281700 chr3B 95.080 1687 67 8 4975 6656 507272780 507274455 0.000000e+00 2641.0
7 TraesCS3A01G281700 chr3B 91.922 619 41 8 7665 8283 507275315 507275924 0.000000e+00 857.0
8 TraesCS3A01G281700 chr3B 94.421 484 24 3 6825 7307 507274553 507275034 0.000000e+00 741.0
9 TraesCS3A01G281700 chr3B 83.274 843 90 26 4151 4979 547107228 547106423 0.000000e+00 728.0
10 TraesCS3A01G281700 chr3B 96.127 284 10 1 7261 7543 507275032 507275315 5.860000e-126 462.0
11 TraesCS3A01G281700 chr3B 90.000 210 9 5 112 309 507268583 507268792 2.290000e-65 261.0
12 TraesCS3A01G281700 chr3B 96.970 66 2 0 6655 6720 507274491 507274556 2.440000e-20 111.0
13 TraesCS3A01G281700 chr3B 95.455 66 2 1 326 390 507268935 507269000 4.090000e-18 104.0
14 TraesCS3A01G281700 chr3D 94.011 3022 98 32 1 2975 389904964 389907949 0.000000e+00 4501.0
15 TraesCS3A01G281700 chr3D 95.940 2586 62 7 4975 7541 389909098 389911659 0.000000e+00 4154.0
16 TraesCS3A01G281700 chr3D 95.250 1158 28 3 3019 4151 389907925 389909080 0.000000e+00 1808.0
17 TraesCS3A01G281700 chr3D 94.064 438 15 1 7846 8283 389911806 389912232 0.000000e+00 654.0
18 TraesCS3A01G281700 chr3D 92.053 151 6 2 7663 7813 389911656 389911800 3.030000e-49 207.0
19 TraesCS3A01G281700 chr3D 95.420 131 5 1 7536 7666 419877837 419877708 3.030000e-49 207.0
20 TraesCS3A01G281700 chr3D 93.382 136 9 0 7532 7667 496172748 496172883 1.410000e-47 202.0
21 TraesCS3A01G281700 chr3D 92.308 143 7 4 7530 7670 427451679 427451539 5.070000e-47 200.0
22 TraesCS3A01G281700 chr3D 93.137 102 7 0 5074 5175 601221851 601221750 5.180000e-32 150.0
23 TraesCS3A01G281700 chr3D 92.784 97 7 0 5074 5170 609983808 609983904 3.120000e-29 141.0
24 TraesCS3A01G281700 chr1D 93.870 832 23 5 4151 4979 46113874 46113068 0.000000e+00 1229.0
25 TraesCS3A01G281700 chr1D 76.537 1155 234 27 1566 2703 437443872 437445006 1.540000e-166 597.0
26 TraesCS3A01G281700 chr1D 83.051 236 38 2 3146 3380 437445398 437445632 6.510000e-51 213.0
27 TraesCS3A01G281700 chr1D 77.778 234 26 17 1336 1554 437443598 437443820 4.060000e-23 121.0
28 TraesCS3A01G281700 chr6A 93.720 621 35 2 7663 8283 74501297 74501913 0.000000e+00 928.0
29 TraesCS3A01G281700 chr6A 100.000 32 0 0 6627 6658 552171459 552171490 8.980000e-05 60.2
30 TraesCS3A01G281700 chr1A 94.389 499 25 3 4479 4975 532548863 532548366 0.000000e+00 763.0
31 TraesCS3A01G281700 chr1A 76.977 1151 224 26 1566 2703 534245696 534244574 3.280000e-173 619.0
32 TraesCS3A01G281700 chr1A 95.611 319 11 1 4151 4466 532550213 532549895 7.420000e-140 508.0
33 TraesCS3A01G281700 chr1A 94.697 132 7 0 7540 7671 287275137 287275006 1.090000e-48 206.0
34 TraesCS3A01G281700 chr1A 94.737 133 6 1 7540 7672 475457003 475456872 1.090000e-48 206.0
35 TraesCS3A01G281700 chr1A 80.932 236 43 2 3146 3380 534244181 534243947 1.420000e-42 185.0
36 TraesCS3A01G281700 chr1A 79.060 234 34 11 1326 1554 534245962 534245739 6.700000e-31 147.0
37 TraesCS3A01G281700 chr1A 80.714 140 11 6 6686 6825 5494169 5494046 2.460000e-15 95.3
38 TraesCS3A01G281700 chr1A 88.000 75 7 2 6676 6748 537892323 537892397 4.120000e-13 87.9
39 TraesCS3A01G281700 chr1A 100.000 32 0 0 6627 6658 593649265 593649296 8.980000e-05 60.2
40 TraesCS3A01G281700 chr4A 86.559 558 65 2 4422 4979 667674627 667674080 2.560000e-169 606.0
41 TraesCS3A01G281700 chr4A 83.300 503 69 11 4149 4647 618179992 618180483 4.560000e-122 449.0
42 TraesCS3A01G281700 chr4A 91.667 204 15 2 4151 4353 519612937 519613139 1.760000e-71 281.0
43 TraesCS3A01G281700 chr4A 92.361 144 9 2 7539 7682 147594800 147594659 3.920000e-48 204.0
44 TraesCS3A01G281700 chr4A 92.000 100 7 1 5075 5173 683431887 683431788 1.120000e-28 139.0
45 TraesCS3A01G281700 chr4A 89.333 75 6 2 6676 6748 407214959 407214885 8.850000e-15 93.5
46 TraesCS3A01G281700 chr4A 89.655 58 6 0 6759 6816 564893710 564893767 3.210000e-09 75.0
47 TraesCS3A01G281700 chr1B 76.211 1156 233 26 1566 2703 592847278 592848409 2.590000e-159 573.0
48 TraesCS3A01G281700 chr1B 86.517 445 44 7 4151 4584 576133540 576133979 7.520000e-130 475.0
49 TraesCS3A01G281700 chr1B 88.218 348 29 6 4639 4979 576134204 576134546 1.000000e-108 405.0
50 TraesCS3A01G281700 chr1B 82.759 232 38 2 3146 3376 592848803 592849033 1.090000e-48 206.0
51 TraesCS3A01G281700 chr1B 77.966 236 32 13 1333 1554 592846997 592847226 6.750000e-26 130.0
52 TraesCS3A01G281700 chr2D 86.009 436 32 11 4552 4979 40898425 40898011 2.740000e-119 440.0
53 TraesCS3A01G281700 chr2D 90.378 291 20 5 4137 4423 40898716 40898430 7.850000e-100 375.0
54 TraesCS3A01G281700 chr2D 88.571 105 12 0 5073 5177 571076638 571076742 2.430000e-25 128.0
55 TraesCS3A01G281700 chr2D 83.019 106 16 2 4372 4475 599783718 599783823 2.460000e-15 95.3
56 TraesCS3A01G281700 chr5A 85.321 436 40 8 4548 4976 347462709 347463127 5.940000e-116 429.0
57 TraesCS3A01G281700 chr5A 94.565 92 5 0 5079 5170 9653285 9653194 8.670000e-30 143.0
58 TraesCS3A01G281700 chr5A 88.785 107 12 0 5071 5177 544514198 544514092 1.880000e-26 132.0
59 TraesCS3A01G281700 chr5A 97.143 35 0 1 6627 6660 598812855 598812889 3.230000e-04 58.4
60 TraesCS3A01G281700 chr5B 87.302 378 37 7 4155 4526 416518086 416517714 9.940000e-114 422.0
61 TraesCS3A01G281700 chr4B 80.682 440 65 10 4541 4979 395908074 395908494 2.880000e-84 324.0
62 TraesCS3A01G281700 chr4B 83.333 318 45 5 4669 4979 668329525 668329209 3.780000e-73 287.0
63 TraesCS3A01G281700 chr4B 92.308 39 2 1 6614 6652 74557042 74557079 4.000000e-03 54.7
64 TraesCS3A01G281700 chr7D 79.470 453 74 11 4527 4977 189911968 189912403 3.760000e-78 303.0
65 TraesCS3A01G281700 chr7D 91.667 48 4 0 5125 5172 197883718 197883765 5.370000e-07 67.6
66 TraesCS3A01G281700 chr6D 86.545 275 26 5 4714 4985 289022322 289022056 8.130000e-75 292.0
67 TraesCS3A01G281700 chr6D 90.411 219 16 4 4151 4368 289022966 289022752 4.890000e-72 283.0
68 TraesCS3A01G281700 chr6D 100.000 32 0 0 6627 6658 13994229 13994260 8.980000e-05 60.2
69 TraesCS3A01G281700 chr4D 88.532 218 23 1 4151 4368 7875496 7875711 6.380000e-66 263.0
70 TraesCS3A01G281700 chr4D 90.566 53 5 0 5125 5177 85586342 85586290 4.150000e-08 71.3
71 TraesCS3A01G281700 chrUn 91.250 160 11 2 7538 7697 11031658 11031814 1.810000e-51 215.0
72 TraesCS3A01G281700 chr7B 94.697 132 7 0 7540 7671 678632358 678632489 1.090000e-48 206.0
73 TraesCS3A01G281700 chr7B 91.589 107 8 1 5066 5172 162120805 162120910 6.700000e-31 147.0
74 TraesCS3A01G281700 chr7B 80.137 146 13 7 6679 6824 533773484 533773355 2.460000e-15 95.3
75 TraesCS3A01G281700 chr7B 88.136 59 6 1 6759 6816 533773421 533773479 1.490000e-07 69.4
76 TraesCS3A01G281700 chr7B 95.122 41 2 0 6776 6816 686132202 686132242 1.930000e-06 65.8
77 TraesCS3A01G281700 chr2B 90.476 105 10 0 5073 5177 683025747 683025851 1.120000e-28 139.0
78 TraesCS3A01G281700 chr5D 89.720 107 11 0 5071 5177 428676979 428676873 4.030000e-28 137.0
79 TraesCS3A01G281700 chr5D 85.185 81 11 1 6679 6759 443649375 443649296 1.920000e-11 82.4
80 TraesCS3A01G281700 chr5D 90.909 55 5 0 6762 6816 443649316 443649370 3.210000e-09 75.0
81 TraesCS3A01G281700 chr7A 90.909 77 4 3 6676 6750 532464056 532464131 5.290000e-17 100.0
82 TraesCS3A01G281700 chr7A 95.000 60 3 0 6679 6738 573430959 573430900 2.460000e-15 95.3
83 TraesCS3A01G281700 chr7A 78.378 148 12 11 6683 6828 59199643 59199772 2.480000e-10 78.7
84 TraesCS3A01G281700 chr7A 88.136 59 6 1 6759 6816 573430896 573430954 1.490000e-07 69.4
85 TraesCS3A01G281700 chr6B 78.417 139 26 4 6686 6821 72260368 72260505 4.120000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G281700 chr3A 510589234 510597516 8282 False 15296.000000 15296 100.000000 1 8283 1 chr3A.!!$F3 8282
1 TraesCS3A01G281700 chr3B 507268583 507275924 7341 False 1362.375000 5722 94.285375 112 8283 8 chr3B.!!$F1 8171
2 TraesCS3A01G281700 chr3B 547106423 547107228 805 True 728.000000 728 83.274000 4151 4979 1 chr3B.!!$R1 828
3 TraesCS3A01G281700 chr3D 389904964 389912232 7268 False 2264.800000 4501 94.263600 1 8283 5 chr3D.!!$F3 8282
4 TraesCS3A01G281700 chr1D 46113068 46113874 806 True 1229.000000 1229 93.870000 4151 4979 1 chr1D.!!$R1 828
5 TraesCS3A01G281700 chr1D 437443598 437445632 2034 False 310.333333 597 79.122000 1336 3380 3 chr1D.!!$F1 2044
6 TraesCS3A01G281700 chr6A 74501297 74501913 616 False 928.000000 928 93.720000 7663 8283 1 chr6A.!!$F1 620
7 TraesCS3A01G281700 chr1A 532548366 532550213 1847 True 635.500000 763 95.000000 4151 4975 2 chr1A.!!$R4 824
8 TraesCS3A01G281700 chr1A 534243947 534245962 2015 True 317.000000 619 78.989667 1326 3380 3 chr1A.!!$R5 2054
9 TraesCS3A01G281700 chr4A 667674080 667674627 547 True 606.000000 606 86.559000 4422 4979 1 chr4A.!!$R3 557
10 TraesCS3A01G281700 chr1B 576133540 576134546 1006 False 440.000000 475 87.367500 4151 4979 2 chr1B.!!$F1 828
11 TraesCS3A01G281700 chr1B 592846997 592849033 2036 False 303.000000 573 78.978667 1333 3376 3 chr1B.!!$F2 2043
12 TraesCS3A01G281700 chr2D 40898011 40898716 705 True 407.500000 440 88.193500 4137 4979 2 chr2D.!!$R1 842
13 TraesCS3A01G281700 chr6D 289022056 289022966 910 True 287.500000 292 88.478000 4151 4985 2 chr6D.!!$R1 834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 604 0.103208 AAATGGTAGAGCGCGAGAGG 59.897 55.000 12.10 0.00 0.00 3.69 F
841 1012 0.391263 AAGGCGTCCAAATCTCCGAC 60.391 55.000 0.00 0.00 0.00 4.79 F
2248 2529 1.202675 ACAATGTTGGCAAAAGCAGGG 60.203 47.619 0.00 0.00 0.00 4.45 F
2987 3317 0.254462 TGGAATAATCGGCACAGGCA 59.746 50.000 0.00 0.00 43.71 4.75 F
2988 3318 0.663153 GGAATAATCGGCACAGGCAC 59.337 55.000 0.00 0.00 43.71 5.01 F
3078 3476 0.984230 TGACTTAAGCCCCTGTCAGG 59.016 55.000 12.40 12.40 34.94 3.86 F
4512 6042 0.378610 TAGCATCGACTGAGAGCACG 59.621 55.000 0.00 0.00 33.03 5.34 F
4610 6141 1.272490 TGGTAGCCGATCGATTCCATC 59.728 52.381 18.66 0.49 0.00 3.51 F
6506 8326 1.369625 CGTATTGGTGAGGAGTTGCC 58.630 55.000 0.00 0.00 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2248 2529 1.613836 GGCCCAATCTCCATCACATC 58.386 55.000 0.0 0.0 0.00 3.06 R
2427 2708 2.500229 ACAAGGATAAACACCACACGG 58.500 47.619 0.0 0.0 38.77 4.94 R
3139 3550 2.031120 ACCAAACCAACCTGTGACATG 58.969 47.619 0.0 0.0 0.00 3.21 R
4420 4931 1.861575 GCACGAGCTAATCTACAAGCC 59.138 52.381 0.0 0.0 39.64 4.35 R
4477 5917 3.696281 TGCTAAATCATGGCATTCGTG 57.304 42.857 0.0 0.0 0.00 4.35 R
5208 7024 4.006319 CCTGTAGGAAGAAAAGAAGCTGG 58.994 47.826 0.0 0.0 37.39 4.85 R
6506 8326 1.937223 TGTGTAGTTCCACAAACGCAG 59.063 47.619 0.0 0.0 42.13 5.18 R
6747 8622 9.959721 ATGTATCTAACACAAAGATAAAGGTGT 57.040 29.630 0.0 0.0 45.66 4.16 R
7538 9459 0.035739 TTTTGGGACGGCAGGAGTAC 59.964 55.000 0.0 0.0 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.000739 CCTGGTCCCTGGGTACGTA 59.999 63.158 13.56 0.00 0.00 3.57
34 35 1.325476 CCTGGTCCCTGGGTACGTAC 61.325 65.000 17.56 17.56 0.00 3.67
35 36 1.660560 CTGGTCCCTGGGTACGTACG 61.661 65.000 18.98 15.01 0.00 3.67
36 37 1.678970 GGTCCCTGGGTACGTACGT 60.679 63.158 25.98 25.98 0.00 3.57
68 69 3.501911 AGCCAGGCACCTGTGGTT 61.502 61.111 15.80 0.00 42.15 3.67
71 72 1.302832 CCAGGCACCTGTGGTTCTC 60.303 63.158 15.39 0.00 42.15 2.87
72 73 1.757306 CAGGCACCTGTGGTTCTCT 59.243 57.895 8.61 0.00 39.10 3.10
83 84 2.370519 TGTGGTTCTCTTTCCCGATTCA 59.629 45.455 0.00 0.00 0.00 2.57
95 96 1.151777 CCGATTCATGTCGTTCGGGG 61.152 60.000 15.62 0.00 45.65 5.73
102 103 2.757099 GTCGTTCGGGGCCCTCTA 60.757 66.667 24.38 4.16 0.00 2.43
122 123 0.596577 TCCTTCTCGACGTTGTCTGG 59.403 55.000 1.96 2.10 0.00 3.86
138 139 3.219198 GGTGATTGCGGCCATCCC 61.219 66.667 11.09 8.28 0.00 3.85
170 171 3.119193 CCCCCGAATCATTTGCCG 58.881 61.111 0.00 0.00 0.00 5.69
187 188 3.408851 GCCGACGTTTCACCCGAC 61.409 66.667 0.00 0.00 0.00 4.79
271 281 2.184322 CATCCGTCGGTCCACCAG 59.816 66.667 11.88 0.00 35.14 4.00
323 333 2.311124 AAAGTACTATGCACGGCTCC 57.689 50.000 0.00 0.00 0.00 4.70
393 533 2.300066 CGTCACGTGCTTTCTGCGA 61.300 57.895 11.67 0.00 46.63 5.10
459 604 0.103208 AAATGGTAGAGCGCGAGAGG 59.897 55.000 12.10 0.00 0.00 3.69
490 635 2.034179 TGTACCGTCTTATCATCAGCCG 59.966 50.000 0.00 0.00 0.00 5.52
517 662 2.559840 ACGACAGTACGTGGAGCG 59.440 61.111 0.00 0.00 44.84 5.03
518 663 2.874780 CGACAGTACGTGGAGCGC 60.875 66.667 0.00 0.00 46.11 5.92
519 664 2.257371 GACAGTACGTGGAGCGCA 59.743 61.111 11.47 0.00 46.11 6.09
520 665 2.049433 ACAGTACGTGGAGCGCAC 60.049 61.111 11.47 1.97 46.11 5.34
527 672 3.749064 GTGGAGCGCACGGAGAGA 61.749 66.667 11.47 0.00 0.00 3.10
654 809 2.482326 CCGAGAAAGGCCAATCCAC 58.518 57.895 5.01 0.00 37.29 4.02
691 851 0.539051 GAGGGAGATCCATATGCCCG 59.461 60.000 9.06 0.00 43.64 6.13
738 898 2.203139 CGCCAGTTCCCACACACA 60.203 61.111 0.00 0.00 0.00 3.72
739 899 2.542907 CGCCAGTTCCCACACACAC 61.543 63.158 0.00 0.00 0.00 3.82
828 999 1.599797 CCTCCAACCGAAAAGGCGT 60.600 57.895 0.00 0.00 46.52 5.68
829 1000 1.574702 CCTCCAACCGAAAAGGCGTC 61.575 60.000 0.00 0.00 46.52 5.19
830 1001 1.574702 CTCCAACCGAAAAGGCGTCC 61.575 60.000 0.00 0.00 46.52 4.79
841 1012 0.391263 AAGGCGTCCAAATCTCCGAC 60.391 55.000 0.00 0.00 0.00 4.79
844 1015 1.518572 CGTCCAAATCTCCGACCCG 60.519 63.158 0.00 0.00 0.00 5.28
895 1066 3.935872 CGGCACACACACACACGG 61.936 66.667 0.00 0.00 0.00 4.94
898 1069 2.821810 CACACACACACACGGCCA 60.822 61.111 2.24 0.00 0.00 5.36
899 1070 2.822255 ACACACACACACGGCCAC 60.822 61.111 2.24 0.00 0.00 5.01
978 1157 4.537433 GCCTCGATCCCAGCGCTT 62.537 66.667 7.50 0.00 0.00 4.68
1272 1457 3.372730 CCCGACCCGTACACCGAA 61.373 66.667 0.00 0.00 39.56 4.30
2248 2529 1.202675 ACAATGTTGGCAAAAGCAGGG 60.203 47.619 0.00 0.00 0.00 4.45
2720 3001 6.718388 TCGTAAGATATTTTGCAAGCATCAG 58.282 36.000 15.27 7.22 45.01 2.90
2773 3055 2.463553 ATTTCGCAAGCATGATCGTG 57.536 45.000 10.76 10.76 37.18 4.35
2889 3219 8.684386 AATAATTTAGTTGGGGTTTTGTTTGG 57.316 30.769 0.00 0.00 0.00 3.28
2956 3286 7.267857 ACTTCAGATGACACATATGATCGAAA 58.732 34.615 10.38 1.87 0.00 3.46
2957 3287 7.930325 ACTTCAGATGACACATATGATCGAAAT 59.070 33.333 10.38 0.00 0.00 2.17
2958 3288 9.415544 CTTCAGATGACACATATGATCGAAATA 57.584 33.333 10.38 0.00 0.00 1.40
2959 3289 9.933723 TTCAGATGACACATATGATCGAAATAT 57.066 29.630 10.38 0.00 0.00 1.28
2960 3290 9.578439 TCAGATGACACATATGATCGAAATATC 57.422 33.333 10.38 5.56 0.00 1.63
2961 3291 9.362539 CAGATGACACATATGATCGAAATATCA 57.637 33.333 10.38 0.00 40.07 2.15
2962 3292 9.363763 AGATGACACATATGATCGAAATATCAC 57.636 33.333 10.38 0.00 38.65 3.06
2963 3293 9.143631 GATGACACATATGATCGAAATATCACA 57.856 33.333 10.38 0.00 38.65 3.58
2964 3294 9.662947 ATGACACATATGATCGAAATATCACAT 57.337 29.630 10.38 0.00 38.65 3.21
2965 3295 8.928733 TGACACATATGATCGAAATATCACATG 58.071 33.333 10.38 3.97 43.39 3.21
2966 3296 8.260270 ACACATATGATCGAAATATCACATGG 57.740 34.615 10.38 2.51 42.51 3.66
2967 3297 7.879677 ACACATATGATCGAAATATCACATGGT 59.120 33.333 10.38 3.00 42.51 3.55
2968 3298 8.724229 CACATATGATCGAAATATCACATGGTT 58.276 33.333 10.38 0.00 42.51 3.67
2969 3299 8.724229 ACATATGATCGAAATATCACATGGTTG 58.276 33.333 10.38 0.00 42.51 3.77
2970 3300 6.564709 ATGATCGAAATATCACATGGTTGG 57.435 37.500 0.00 0.00 38.65 3.77
2971 3301 5.679601 TGATCGAAATATCACATGGTTGGA 58.320 37.500 0.00 0.00 30.92 3.53
2972 3302 6.118852 TGATCGAAATATCACATGGTTGGAA 58.881 36.000 0.00 0.00 30.92 3.53
2973 3303 6.772233 TGATCGAAATATCACATGGTTGGAAT 59.228 34.615 0.00 0.00 30.92 3.01
2974 3304 7.936301 TGATCGAAATATCACATGGTTGGAATA 59.064 33.333 0.00 0.00 30.92 1.75
2975 3305 8.690203 ATCGAAATATCACATGGTTGGAATAA 57.310 30.769 0.00 0.00 0.00 1.40
2976 3306 8.690203 TCGAAATATCACATGGTTGGAATAAT 57.310 30.769 0.00 0.00 0.00 1.28
2977 3307 8.783093 TCGAAATATCACATGGTTGGAATAATC 58.217 33.333 0.00 0.00 0.00 1.75
2978 3308 7.746034 CGAAATATCACATGGTTGGAATAATCG 59.254 37.037 0.00 0.00 0.00 3.34
2979 3309 7.452880 AATATCACATGGTTGGAATAATCGG 57.547 36.000 0.00 0.00 0.00 4.18
2980 3310 2.948979 TCACATGGTTGGAATAATCGGC 59.051 45.455 0.00 0.00 0.00 5.54
2981 3311 2.687425 CACATGGTTGGAATAATCGGCA 59.313 45.455 0.00 0.00 0.00 5.69
2982 3312 2.687935 ACATGGTTGGAATAATCGGCAC 59.312 45.455 0.00 0.00 0.00 5.01
2983 3313 2.498644 TGGTTGGAATAATCGGCACA 57.501 45.000 0.00 0.00 0.00 4.57
2984 3314 2.364632 TGGTTGGAATAATCGGCACAG 58.635 47.619 0.00 0.00 0.00 3.66
2985 3315 1.676006 GGTTGGAATAATCGGCACAGG 59.324 52.381 0.00 0.00 0.00 4.00
2986 3316 1.065551 GTTGGAATAATCGGCACAGGC 59.934 52.381 0.00 0.00 40.13 4.85
2987 3317 0.254462 TGGAATAATCGGCACAGGCA 59.746 50.000 0.00 0.00 43.71 4.75
2988 3318 0.663153 GGAATAATCGGCACAGGCAC 59.337 55.000 0.00 0.00 43.71 5.01
2989 3319 1.668419 GAATAATCGGCACAGGCACT 58.332 50.000 0.00 0.00 43.71 4.40
3003 3333 2.787994 AGGCACTGAATGGTCTCTTTG 58.212 47.619 0.00 0.00 37.18 2.77
3004 3334 1.815003 GGCACTGAATGGTCTCTTTGG 59.185 52.381 0.00 0.00 0.00 3.28
3005 3335 2.508526 GCACTGAATGGTCTCTTTGGT 58.491 47.619 0.00 0.00 0.00 3.67
3006 3336 3.559171 GGCACTGAATGGTCTCTTTGGTA 60.559 47.826 0.00 0.00 0.00 3.25
3007 3337 4.265073 GCACTGAATGGTCTCTTTGGTAT 58.735 43.478 0.00 0.00 0.00 2.73
3008 3338 5.428253 GCACTGAATGGTCTCTTTGGTATA 58.572 41.667 0.00 0.00 0.00 1.47
3009 3339 5.880332 GCACTGAATGGTCTCTTTGGTATAA 59.120 40.000 0.00 0.00 0.00 0.98
3010 3340 6.374333 GCACTGAATGGTCTCTTTGGTATAAA 59.626 38.462 0.00 0.00 0.00 1.40
3011 3341 7.067494 GCACTGAATGGTCTCTTTGGTATAAAT 59.933 37.037 0.00 0.00 0.00 1.40
3012 3342 8.960591 CACTGAATGGTCTCTTTGGTATAAATT 58.039 33.333 0.00 0.00 0.00 1.82
3013 3343 9.533831 ACTGAATGGTCTCTTTGGTATAAATTT 57.466 29.630 0.00 0.00 0.00 1.82
3014 3344 9.793252 CTGAATGGTCTCTTTGGTATAAATTTG 57.207 33.333 0.00 0.00 0.00 2.32
3015 3345 8.748412 TGAATGGTCTCTTTGGTATAAATTTGG 58.252 33.333 0.00 0.00 0.00 3.28
3016 3346 8.664669 AATGGTCTCTTTGGTATAAATTTGGT 57.335 30.769 0.00 0.00 0.00 3.67
3017 3347 9.762381 AATGGTCTCTTTGGTATAAATTTGGTA 57.238 29.630 0.00 0.00 0.00 3.25
3018 3348 9.762381 ATGGTCTCTTTGGTATAAATTTGGTAA 57.238 29.630 0.00 0.00 0.00 2.85
3019 3349 9.762381 TGGTCTCTTTGGTATAAATTTGGTAAT 57.238 29.630 0.00 0.00 0.00 1.89
3078 3476 0.984230 TGACTTAAGCCCCTGTCAGG 59.016 55.000 12.40 12.40 34.94 3.86
3139 3550 8.237267 ACAACAATATAACTTAGCTGCTTGTTC 58.763 33.333 19.00 0.00 34.39 3.18
3184 3595 5.924356 TCCGATGATAAGCTGGTTGATTTA 58.076 37.500 1.72 0.00 0.00 1.40
3433 3869 5.480073 CCTGGCTATCTCTGCTAAGACTATT 59.520 44.000 0.00 0.00 0.00 1.73
3475 3911 5.705441 GTCTGGTTGACATGTTATTCTTCCA 59.295 40.000 0.00 2.19 44.73 3.53
3507 3943 5.455056 ACGGTTAATATTTTGCAACCACA 57.545 34.783 15.09 0.00 40.40 4.17
3528 3964 7.552687 ACCACATAATGTAGTGTTCTGGTATTG 59.447 37.037 0.00 0.00 33.99 1.90
3588 4024 3.255642 GGCAGGCTTTGAAAACACTATCA 59.744 43.478 0.00 0.00 0.00 2.15
3741 4177 1.916777 GGACGGTTCCCTTCCTGGA 60.917 63.158 0.00 0.00 38.70 3.86
3993 4429 3.117322 AGCTAAGATCTGTCAGCCTAGGA 60.117 47.826 14.75 0.00 34.49 2.94
4505 6035 3.133691 GCCATGATTTAGCATCGACTGA 58.866 45.455 0.00 0.00 0.00 3.41
4512 6042 0.378610 TAGCATCGACTGAGAGCACG 59.621 55.000 0.00 0.00 33.03 5.34
4610 6141 1.272490 TGGTAGCCGATCGATTCCATC 59.728 52.381 18.66 0.49 0.00 3.51
4671 6387 5.668080 TCAGATCCTAGTGTCTAGGAGAGAA 59.332 44.000 23.80 11.67 45.89 2.87
4935 6750 3.696051 CCCACACATTGAAATACTGAGGG 59.304 47.826 0.00 0.00 0.00 4.30
5208 7024 9.575783 TTGTTCTACCAAATTGTTTTCTAACAC 57.424 29.630 0.00 0.00 43.66 3.32
5269 7085 8.144478 AGTGATATTCAGCTCACGTGTAAATAT 58.856 33.333 16.51 16.19 45.08 1.28
5627 7443 9.864034 GAAACAGATAATGGTGTTCGTAATATG 57.136 33.333 0.00 0.00 35.83 1.78
6313 8133 5.076182 CACAGGAGATTAGAGCCTAGATCA 58.924 45.833 0.00 0.00 0.00 2.92
6374 8194 6.430451 CGGAAGGTAATATTCATGTTTGAGC 58.570 40.000 0.00 0.00 32.27 4.26
6506 8326 1.369625 CGTATTGGTGAGGAGTTGCC 58.630 55.000 0.00 0.00 0.00 4.52
6765 8640 9.787435 TGTTAGATACACCTTTATCTTTGTGTT 57.213 29.630 0.00 0.00 41.76 3.32
6810 8685 8.552296 ACAGATCTAAGACAACTAATTTGGGAT 58.448 33.333 0.00 0.00 39.84 3.85
6839 8714 6.353169 GGGAGTAGAATAGAGGCCTTTTTCTT 60.353 42.308 22.97 11.81 30.89 2.52
6851 8726 9.129532 AGAGGCCTTTTTCTTAAGATGAATATG 57.870 33.333 6.77 0.00 0.00 1.78
6875 8750 8.243961 TGACAATTTCTATGAGGAAACCAAAA 57.756 30.769 0.00 0.00 37.91 2.44
6876 8751 8.359642 TGACAATTTCTATGAGGAAACCAAAAG 58.640 33.333 0.00 0.00 37.91 2.27
6877 8752 8.250143 ACAATTTCTATGAGGAAACCAAAAGT 57.750 30.769 0.00 0.00 37.91 2.66
6902 8777 9.251792 GTATTTGAAAAAGGAAACGGTAACATT 57.748 29.630 0.00 0.00 0.00 2.71
6963 8838 9.346725 GTTGATTTTTCCTGATACATTCTTGAC 57.653 33.333 0.00 0.00 0.00 3.18
7026 8902 8.260818 AGTGAATTAGCAACTGTGTAGTGATAT 58.739 33.333 0.00 0.00 37.19 1.63
7088 8964 6.934056 TGGTAATGTGCATGAAAAATTAGCT 58.066 32.000 15.54 0.00 34.12 3.32
7089 8965 7.035004 TGGTAATGTGCATGAAAAATTAGCTC 58.965 34.615 15.54 0.00 34.12 4.09
7091 8967 4.095410 TGTGCATGAAAAATTAGCTCCG 57.905 40.909 0.00 0.00 0.00 4.63
7316 9236 5.235831 AGAAGTGGTAGTTTTACAAGCGTTC 59.764 40.000 0.00 0.00 0.00 3.95
7492 9413 2.260844 TGAAAGCCAACAGAGTCTGG 57.739 50.000 23.79 8.76 35.51 3.86
7496 9417 0.472734 AGCCAACAGAGTCTGGACCT 60.473 55.000 23.79 11.23 35.51 3.85
7524 9445 8.957466 AGGCTTCACTAATAAATGGTTTTCTAC 58.043 33.333 0.00 0.00 0.00 2.59
7537 9458 4.222810 TGGTTTTCTACTCAGCATAGCTCA 59.777 41.667 0.00 0.00 36.40 4.26
7538 9459 4.808364 GGTTTTCTACTCAGCATAGCTCAG 59.192 45.833 0.00 0.00 36.40 3.35
7539 9460 5.415221 GTTTTCTACTCAGCATAGCTCAGT 58.585 41.667 0.44 0.44 43.55 3.41
7540 9461 6.405953 GGTTTTCTACTCAGCATAGCTCAGTA 60.406 42.308 2.85 2.85 38.44 2.74
7541 9462 5.759506 TTCTACTCAGCATAGCTCAGTAC 57.240 43.478 0.00 0.00 38.44 2.73
7542 9463 5.042463 TCTACTCAGCATAGCTCAGTACT 57.958 43.478 0.00 0.00 38.44 2.73
7543 9464 5.060506 TCTACTCAGCATAGCTCAGTACTC 58.939 45.833 0.00 0.00 38.44 2.59
7544 9465 2.955660 ACTCAGCATAGCTCAGTACTCC 59.044 50.000 0.00 0.00 38.44 3.85
7545 9466 3.221771 CTCAGCATAGCTCAGTACTCCT 58.778 50.000 0.00 0.00 36.40 3.69
7546 9467 2.954989 TCAGCATAGCTCAGTACTCCTG 59.045 50.000 0.00 0.00 42.97 3.86
7547 9468 1.686052 AGCATAGCTCAGTACTCCTGC 59.314 52.381 0.00 0.00 41.25 4.85
7548 9469 1.270041 GCATAGCTCAGTACTCCTGCC 60.270 57.143 0.00 0.00 41.25 4.85
7549 9470 1.000827 CATAGCTCAGTACTCCTGCCG 60.001 57.143 0.00 0.00 41.25 5.69
7550 9471 0.034380 TAGCTCAGTACTCCTGCCGT 60.034 55.000 0.00 0.00 41.25 5.68
7551 9472 1.139947 GCTCAGTACTCCTGCCGTC 59.860 63.158 0.00 0.00 41.25 4.79
7552 9473 1.810532 CTCAGTACTCCTGCCGTCC 59.189 63.158 0.00 0.00 41.25 4.79
7553 9474 1.668101 CTCAGTACTCCTGCCGTCCC 61.668 65.000 0.00 0.00 41.25 4.46
7554 9475 1.982395 CAGTACTCCTGCCGTCCCA 60.982 63.158 0.00 0.00 33.59 4.37
7555 9476 1.229082 AGTACTCCTGCCGTCCCAA 60.229 57.895 0.00 0.00 0.00 4.12
7556 9477 0.834687 AGTACTCCTGCCGTCCCAAA 60.835 55.000 0.00 0.00 0.00 3.28
7557 9478 0.035739 GTACTCCTGCCGTCCCAAAA 59.964 55.000 0.00 0.00 0.00 2.44
7558 9479 0.988832 TACTCCTGCCGTCCCAAAAT 59.011 50.000 0.00 0.00 0.00 1.82
7559 9480 0.112412 ACTCCTGCCGTCCCAAAATT 59.888 50.000 0.00 0.00 0.00 1.82
7560 9481 0.811281 CTCCTGCCGTCCCAAAATTC 59.189 55.000 0.00 0.00 0.00 2.17
7561 9482 0.404040 TCCTGCCGTCCCAAAATTCT 59.596 50.000 0.00 0.00 0.00 2.40
7562 9483 1.203001 TCCTGCCGTCCCAAAATTCTT 60.203 47.619 0.00 0.00 0.00 2.52
7563 9484 1.067635 CCTGCCGTCCCAAAATTCTTG 60.068 52.381 0.00 0.00 0.00 3.02
7564 9485 1.613437 CTGCCGTCCCAAAATTCTTGT 59.387 47.619 0.00 0.00 0.00 3.16
7565 9486 1.611491 TGCCGTCCCAAAATTCTTGTC 59.389 47.619 0.00 0.00 0.00 3.18
7566 9487 1.886542 GCCGTCCCAAAATTCTTGTCT 59.113 47.619 0.00 0.00 0.00 3.41
7567 9488 2.296190 GCCGTCCCAAAATTCTTGTCTT 59.704 45.455 0.00 0.00 0.00 3.01
7568 9489 3.504520 GCCGTCCCAAAATTCTTGTCTTA 59.495 43.478 0.00 0.00 0.00 2.10
7569 9490 4.379499 GCCGTCCCAAAATTCTTGTCTTAG 60.379 45.833 0.00 0.00 0.00 2.18
7570 9491 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
7571 9492 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
7572 9493 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
7573 9494 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
7574 9495 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
7575 9496 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
7576 9497 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
7577 9498 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
7585 9506 9.392259 TCTTGTCTTAGATTTGTCTAGATACGA 57.608 33.333 0.00 0.00 0.00 3.43
7588 9509 9.952188 TGTCTTAGATTTGTCTAGATACGAATG 57.048 33.333 0.00 0.00 34.30 2.67
7589 9510 9.953697 GTCTTAGATTTGTCTAGATACGAATGT 57.046 33.333 0.00 0.00 34.30 2.71
7599 9520 9.993454 TGTCTAGATACGAATGTATGTAGTACT 57.007 33.333 15.14 0.00 46.93 2.73
7620 9541 9.601217 AGTACTAAAACATGACTTGATACATCC 57.399 33.333 0.00 0.00 0.00 3.51
7621 9542 7.539712 ACTAAAACATGACTTGATACATCCG 57.460 36.000 0.00 0.00 0.00 4.18
7622 9543 7.103641 ACTAAAACATGACTTGATACATCCGT 58.896 34.615 0.00 0.00 0.00 4.69
7623 9544 8.255206 ACTAAAACATGACTTGATACATCCGTA 58.745 33.333 0.00 0.00 0.00 4.02
7624 9545 9.261180 CTAAAACATGACTTGATACATCCGTAT 57.739 33.333 0.00 0.00 41.16 3.06
7625 9546 8.506168 AAAACATGACTTGATACATCCGTATT 57.494 30.769 0.00 0.00 38.48 1.89
7626 9547 8.506168 AAACATGACTTGATACATCCGTATTT 57.494 30.769 0.00 0.00 38.48 1.40
7627 9548 9.607988 AAACATGACTTGATACATCCGTATTTA 57.392 29.630 0.00 0.00 38.48 1.40
7628 9549 8.818141 ACATGACTTGATACATCCGTATTTAG 57.182 34.615 0.00 0.00 38.48 1.85
7629 9550 8.638873 ACATGACTTGATACATCCGTATTTAGA 58.361 33.333 0.00 0.00 38.48 2.10
7630 9551 8.916654 CATGACTTGATACATCCGTATTTAGAC 58.083 37.037 0.00 0.00 38.48 2.59
7631 9552 8.002984 TGACTTGATACATCCGTATTTAGACA 57.997 34.615 0.00 0.00 38.48 3.41
7632 9553 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
7633 9554 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
7634 9555 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
7641 9562 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
7642 9563 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
7644 9565 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
7645 9566 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
7653 9574 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
7654 9575 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
7655 9576 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
7656 9577 8.359642 CAAATCTAAGACAAGAATTTTGGGACA 58.640 33.333 5.68 0.00 28.49 4.02
7657 9578 7.693969 ATCTAAGACAAGAATTTTGGGACAG 57.306 36.000 5.68 0.00 42.39 3.51
7658 9579 6.837312 TCTAAGACAAGAATTTTGGGACAGA 58.163 36.000 5.68 0.00 42.39 3.41
7659 9580 6.936900 TCTAAGACAAGAATTTTGGGACAGAG 59.063 38.462 5.68 0.00 42.39 3.35
7660 9581 4.401925 AGACAAGAATTTTGGGACAGAGG 58.598 43.478 5.68 0.00 42.39 3.69
7661 9582 3.500343 ACAAGAATTTTGGGACAGAGGG 58.500 45.455 5.68 0.00 42.39 4.30
7719 9643 6.357367 AGGAACAGTTTGTGATTAGTGAACT 58.643 36.000 0.00 0.00 0.00 3.01
7722 9646 8.784043 GGAACAGTTTGTGATTAGTGAACTATT 58.216 33.333 0.00 0.00 0.00 1.73
7759 9683 6.658188 ATATTGACCACGAAAAGGGAAAAA 57.342 33.333 0.00 0.00 0.00 1.94
7760 9684 4.379339 TTGACCACGAAAAGGGAAAAAG 57.621 40.909 0.00 0.00 0.00 2.27
7964 9889 5.248640 AGGTCACTGAACAAATGATACAGG 58.751 41.667 0.00 0.00 33.57 4.00
8018 9943 7.642978 GCAACATGCTCATAGATGTTTAGAAAG 59.357 37.037 0.00 0.00 40.12 2.62
8110 10035 2.342650 CCACCACCAGAATTGCCCG 61.343 63.158 0.00 0.00 0.00 6.13
8221 10146 5.391312 AGCCGATCTTTTGTTAAAATGCT 57.609 34.783 0.00 0.00 0.00 3.79
8234 10159 4.891727 ATGCTCCCCGCGCTTACG 62.892 66.667 5.56 0.00 43.27 3.18
8244 10169 1.483316 CGCGCTTACGGTAATCATCA 58.517 50.000 5.56 0.00 40.57 3.07
8257 10182 6.536582 ACGGTAATCATCAGAGATTTTGAGTG 59.463 38.462 0.00 0.00 38.97 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.038166 AGAACGTACGTACCCAGGGA 59.962 55.000 23.12 0.00 0.00 4.20
33 34 4.681978 GGTCAGCGGCCAGAACGT 62.682 66.667 2.24 0.00 0.00 3.99
34 35 4.680237 TGGTCAGCGGCCAGAACG 62.680 66.667 2.24 0.00 0.00 3.95
61 62 2.770164 ATCGGGAAAGAGAACCACAG 57.230 50.000 0.00 0.00 0.00 3.66
68 69 2.496070 ACGACATGAATCGGGAAAGAGA 59.504 45.455 10.11 0.00 46.56 3.10
71 72 2.029244 CGAACGACATGAATCGGGAAAG 59.971 50.000 10.11 0.00 46.56 2.62
72 73 1.996898 CGAACGACATGAATCGGGAAA 59.003 47.619 10.11 0.00 46.56 3.13
83 84 2.866523 TAGAGGGCCCCGAACGACAT 62.867 60.000 21.43 0.00 0.00 3.06
95 96 0.594110 CGTCGAGAAGGATAGAGGGC 59.406 60.000 0.00 0.00 0.00 5.19
101 102 2.422479 CCAGACAACGTCGAGAAGGATA 59.578 50.000 0.00 0.00 37.67 2.59
102 103 1.202582 CCAGACAACGTCGAGAAGGAT 59.797 52.381 0.00 0.00 37.67 3.24
122 123 3.585990 CGGGATGGCCGCAATCAC 61.586 66.667 10.01 4.93 33.83 3.06
170 171 3.408851 GTCGGGTGAAACGTCGGC 61.409 66.667 0.00 0.00 38.12 5.54
187 188 2.821366 GTGGAGCCAGGTGCATCG 60.821 66.667 0.00 0.00 44.83 3.84
298 308 6.649557 GGAGCCGTGCATAGTACTTTATTATT 59.350 38.462 0.00 0.00 0.00 1.40
299 309 6.164176 GGAGCCGTGCATAGTACTTTATTAT 58.836 40.000 0.00 0.00 0.00 1.28
300 310 5.069383 TGGAGCCGTGCATAGTACTTTATTA 59.931 40.000 0.00 0.00 0.00 0.98
302 312 3.386726 TGGAGCCGTGCATAGTACTTTAT 59.613 43.478 0.00 0.00 0.00 1.40
306 316 0.460311 GTGGAGCCGTGCATAGTACT 59.540 55.000 0.00 0.00 0.00 2.73
307 317 0.174845 TGTGGAGCCGTGCATAGTAC 59.825 55.000 0.00 0.00 0.00 2.73
308 318 0.899019 TTGTGGAGCCGTGCATAGTA 59.101 50.000 0.00 0.00 0.00 1.82
310 320 0.391661 AGTTGTGGAGCCGTGCATAG 60.392 55.000 0.00 0.00 0.00 2.23
323 333 0.311790 ATCGCACCAGCAAAGTTGTG 59.688 50.000 0.00 0.00 42.27 3.33
412 555 5.858581 GTGAATGGTGAGCTACATCAAAAAC 59.141 40.000 3.70 0.44 43.22 2.43
413 556 5.334802 CGTGAATGGTGAGCTACATCAAAAA 60.335 40.000 3.70 0.00 43.22 1.94
414 557 4.154015 CGTGAATGGTGAGCTACATCAAAA 59.846 41.667 3.70 0.00 43.22 2.44
415 558 3.684305 CGTGAATGGTGAGCTACATCAAA 59.316 43.478 3.70 0.00 43.22 2.69
416 559 3.261580 CGTGAATGGTGAGCTACATCAA 58.738 45.455 3.70 0.00 43.22 2.57
417 560 2.892374 CGTGAATGGTGAGCTACATCA 58.108 47.619 2.27 2.27 44.16 3.07
510 655 3.749064 TCTCTCCGTGCGCTCCAC 61.749 66.667 9.73 0.00 41.15 4.02
511 656 3.749064 GTCTCTCCGTGCGCTCCA 61.749 66.667 9.73 0.00 0.00 3.86
513 658 3.800863 TCGTCTCTCCGTGCGCTC 61.801 66.667 9.73 3.51 0.00 5.03
514 659 4.104417 GTCGTCTCTCCGTGCGCT 62.104 66.667 9.73 0.00 0.00 5.92
516 661 4.477975 GGGTCGTCTCTCCGTGCG 62.478 72.222 0.00 0.00 0.00 5.34
517 662 1.381928 TATGGGTCGTCTCTCCGTGC 61.382 60.000 0.00 0.00 0.00 5.34
518 663 0.381089 GTATGGGTCGTCTCTCCGTG 59.619 60.000 0.00 0.00 0.00 4.94
519 664 0.750911 GGTATGGGTCGTCTCTCCGT 60.751 60.000 0.00 0.00 0.00 4.69
520 665 1.783031 CGGTATGGGTCGTCTCTCCG 61.783 65.000 0.00 0.00 0.00 4.63
521 666 2.031360 CGGTATGGGTCGTCTCTCC 58.969 63.158 0.00 0.00 0.00 3.71
522 667 1.102222 AGCGGTATGGGTCGTCTCTC 61.102 60.000 0.00 0.00 0.00 3.20
523 668 0.683504 AAGCGGTATGGGTCGTCTCT 60.684 55.000 0.00 0.00 0.00 3.10
527 672 2.493030 CGAAGCGGTATGGGTCGT 59.507 61.111 0.00 0.00 0.00 4.34
673 833 0.911525 CCGGGCATATGGATCTCCCT 60.912 60.000 12.05 0.00 34.84 4.20
828 999 0.819582 GTACGGGTCGGAGATTTGGA 59.180 55.000 0.00 0.00 40.67 3.53
829 1000 0.533491 TGTACGGGTCGGAGATTTGG 59.467 55.000 0.00 0.00 40.67 3.28
830 1001 1.203994 AGTGTACGGGTCGGAGATTTG 59.796 52.381 0.00 0.00 40.67 2.32
841 1012 1.358046 GCGGTAGCTAGTGTACGGG 59.642 63.158 0.00 3.52 41.01 5.28
844 1015 0.813184 TGTGGCGGTAGCTAGTGTAC 59.187 55.000 0.00 0.00 44.37 2.90
978 1157 4.267503 TCACGCACGTACGGCACA 62.268 61.111 21.06 4.03 37.37 4.57
2248 2529 1.613836 GGCCCAATCTCCATCACATC 58.386 55.000 0.00 0.00 0.00 3.06
2427 2708 2.500229 ACAAGGATAAACACCACACGG 58.500 47.619 0.00 0.00 38.77 4.94
2460 2741 2.836981 CAGGATGATATGAGGGAGGTCC 59.163 54.545 0.00 0.00 39.69 4.46
2804 3134 9.730705 AACCAGGTATTGAATCTACATGATATG 57.269 33.333 0.00 0.00 33.82 1.78
2889 3219 6.861065 TCACTTCTTGACAAATTACAGGTC 57.139 37.500 0.00 0.00 0.00 3.85
2956 3286 5.415701 GCCGATTATTCCAACCATGTGATAT 59.584 40.000 0.00 0.00 0.00 1.63
2957 3287 4.759693 GCCGATTATTCCAACCATGTGATA 59.240 41.667 0.00 0.00 0.00 2.15
2958 3288 3.569701 GCCGATTATTCCAACCATGTGAT 59.430 43.478 0.00 0.00 0.00 3.06
2959 3289 2.948979 GCCGATTATTCCAACCATGTGA 59.051 45.455 0.00 0.00 0.00 3.58
2960 3290 2.687425 TGCCGATTATTCCAACCATGTG 59.313 45.455 0.00 0.00 0.00 3.21
2961 3291 2.687935 GTGCCGATTATTCCAACCATGT 59.312 45.455 0.00 0.00 0.00 3.21
2962 3292 2.687425 TGTGCCGATTATTCCAACCATG 59.313 45.455 0.00 0.00 0.00 3.66
2963 3293 2.951642 CTGTGCCGATTATTCCAACCAT 59.048 45.455 0.00 0.00 0.00 3.55
2964 3294 2.364632 CTGTGCCGATTATTCCAACCA 58.635 47.619 0.00 0.00 0.00 3.67
2965 3295 1.676006 CCTGTGCCGATTATTCCAACC 59.324 52.381 0.00 0.00 0.00 3.77
2966 3296 1.065551 GCCTGTGCCGATTATTCCAAC 59.934 52.381 0.00 0.00 0.00 3.77
2967 3297 1.340502 TGCCTGTGCCGATTATTCCAA 60.341 47.619 0.00 0.00 36.33 3.53
2968 3298 0.254462 TGCCTGTGCCGATTATTCCA 59.746 50.000 0.00 0.00 36.33 3.53
2969 3299 0.663153 GTGCCTGTGCCGATTATTCC 59.337 55.000 0.00 0.00 36.33 3.01
2970 3300 1.331756 CAGTGCCTGTGCCGATTATTC 59.668 52.381 0.00 0.00 36.33 1.75
2971 3301 1.065491 TCAGTGCCTGTGCCGATTATT 60.065 47.619 2.68 0.00 36.33 1.40
2972 3302 0.541392 TCAGTGCCTGTGCCGATTAT 59.459 50.000 2.68 0.00 36.33 1.28
2973 3303 0.323302 TTCAGTGCCTGTGCCGATTA 59.677 50.000 2.68 0.00 36.33 1.75
2974 3304 0.322816 ATTCAGTGCCTGTGCCGATT 60.323 50.000 2.68 0.00 36.33 3.34
2975 3305 1.028330 CATTCAGTGCCTGTGCCGAT 61.028 55.000 2.68 0.00 36.33 4.18
2976 3306 1.672030 CATTCAGTGCCTGTGCCGA 60.672 57.895 2.68 0.00 36.33 5.54
2977 3307 2.693762 CCATTCAGTGCCTGTGCCG 61.694 63.158 2.68 0.00 36.33 5.69
2978 3308 1.589716 GACCATTCAGTGCCTGTGCC 61.590 60.000 2.68 0.00 36.33 5.01
2979 3309 0.607489 AGACCATTCAGTGCCTGTGC 60.607 55.000 2.68 0.00 38.26 4.57
2980 3310 1.002888 AGAGACCATTCAGTGCCTGTG 59.997 52.381 2.68 0.00 32.61 3.66
2981 3311 1.356124 AGAGACCATTCAGTGCCTGT 58.644 50.000 2.68 0.00 32.61 4.00
2982 3312 2.486472 AAGAGACCATTCAGTGCCTG 57.514 50.000 0.00 0.00 0.00 4.85
2983 3313 2.553904 CCAAAGAGACCATTCAGTGCCT 60.554 50.000 0.00 0.00 0.00 4.75
2984 3314 1.815003 CCAAAGAGACCATTCAGTGCC 59.185 52.381 0.00 0.00 0.00 5.01
2985 3315 2.508526 ACCAAAGAGACCATTCAGTGC 58.491 47.619 0.00 0.00 0.00 4.40
2986 3316 7.921786 TTTATACCAAAGAGACCATTCAGTG 57.078 36.000 0.00 0.00 0.00 3.66
2987 3317 9.533831 AAATTTATACCAAAGAGACCATTCAGT 57.466 29.630 0.00 0.00 0.00 3.41
2988 3318 9.793252 CAAATTTATACCAAAGAGACCATTCAG 57.207 33.333 0.00 0.00 0.00 3.02
2989 3319 8.748412 CCAAATTTATACCAAAGAGACCATTCA 58.252 33.333 0.00 0.00 0.00 2.57
2990 3320 8.749354 ACCAAATTTATACCAAAGAGACCATTC 58.251 33.333 0.00 0.00 0.00 2.67
2991 3321 8.664669 ACCAAATTTATACCAAAGAGACCATT 57.335 30.769 0.00 0.00 0.00 3.16
2992 3322 9.762381 TTACCAAATTTATACCAAAGAGACCAT 57.238 29.630 0.00 0.00 0.00 3.55
2993 3323 9.762381 ATTACCAAATTTATACCAAAGAGACCA 57.238 29.630 0.00 0.00 0.00 4.02
3013 3343 9.913310 TCCAACTATGTGATATTTCAATTACCA 57.087 29.630 0.00 0.00 32.48 3.25
3020 3350 9.056005 GCTGTATTCCAACTATGTGATATTTCA 57.944 33.333 0.00 0.00 0.00 2.69
3021 3351 9.277783 AGCTGTATTCCAACTATGTGATATTTC 57.722 33.333 0.00 0.00 0.00 2.17
3078 3476 4.819769 TGCAACCAAGGAGCATTAAAATC 58.180 39.130 6.84 0.00 32.55 2.17
3139 3550 2.031120 ACCAAACCAACCTGTGACATG 58.969 47.619 0.00 0.00 0.00 3.21
3433 3869 4.556233 CAGACAACCAGACGATTGACTTA 58.444 43.478 0.00 0.00 30.13 2.24
3567 4003 4.216257 TCTGATAGTGTTTTCAAAGCCTGC 59.784 41.667 0.00 0.00 0.00 4.85
3741 4177 2.040278 TGAGTGCCTTGCTACATCCTTT 59.960 45.455 0.00 0.00 0.00 3.11
3792 4228 3.721021 TCTCCTTTCCCCGTAAGAAGAT 58.279 45.455 0.00 0.00 43.02 2.40
3793 4229 3.179902 TCTCCTTTCCCCGTAAGAAGA 57.820 47.619 0.00 0.00 43.02 2.87
3855 4291 2.293399 GGATTGCTCGTTCACTTTGGTT 59.707 45.455 0.00 0.00 0.00 3.67
3993 4429 3.487120 AGACTTTGAAGCTTACCGGTT 57.513 42.857 15.04 0.00 35.72 4.44
4297 4742 5.947663 TGGGACCTCTTTTTCAAATACAGA 58.052 37.500 0.00 0.00 0.00 3.41
4420 4931 1.861575 GCACGAGCTAATCTACAAGCC 59.138 52.381 0.00 0.00 39.64 4.35
4477 5917 3.696281 TGCTAAATCATGGCATTCGTG 57.304 42.857 0.00 0.00 0.00 4.35
5208 7024 4.006319 CCTGTAGGAAGAAAAGAAGCTGG 58.994 47.826 0.00 0.00 37.39 4.85
5269 7085 2.360844 TGAAGTTTTCAGCGTTGGACA 58.639 42.857 0.00 0.00 34.08 4.02
5343 7159 9.687210 ATCATGTTTTGATTCATATCGGATTTG 57.313 29.630 0.00 0.00 42.62 2.32
6017 7833 4.062677 TGCAAAAGCTTCAAGCATCTTT 57.937 36.364 13.10 5.28 45.56 2.52
6313 8133 8.617290 ACGTTCTCCAACAAAGTATATTTCTT 57.383 30.769 0.00 0.00 32.14 2.52
6369 8189 4.261155 GCACACAGTTTCAACATAGCTCAA 60.261 41.667 0.00 0.00 0.00 3.02
6477 8297 5.620206 TCCTCACCAATACGCATATGATTT 58.380 37.500 6.97 0.00 0.00 2.17
6478 8298 5.221722 ACTCCTCACCAATACGCATATGATT 60.222 40.000 6.97 0.00 0.00 2.57
6506 8326 1.937223 TGTGTAGTTCCACAAACGCAG 59.063 47.619 0.00 0.00 42.13 5.18
6747 8622 9.959721 ATGTATCTAACACAAAGATAAAGGTGT 57.040 29.630 0.00 0.00 45.66 4.16
6755 8630 9.507329 AGACACAAATGTATCTAACACAAAGAT 57.493 29.630 0.00 0.00 42.09 2.40
6756 8631 8.902540 AGACACAAATGTATCTAACACAAAGA 57.097 30.769 0.00 0.00 42.09 2.52
6757 8632 9.385902 CAAGACACAAATGTATCTAACACAAAG 57.614 33.333 0.00 0.00 42.09 2.77
6758 8633 9.114952 TCAAGACACAAATGTATCTAACACAAA 57.885 29.630 0.00 0.00 42.09 2.83
6759 8634 8.556194 GTCAAGACACAAATGTATCTAACACAA 58.444 33.333 0.00 0.00 42.09 3.33
6760 8635 7.713073 TGTCAAGACACAAATGTATCTAACACA 59.287 33.333 0.00 0.00 39.95 3.72
6761 8636 8.083462 TGTCAAGACACAAATGTATCTAACAC 57.917 34.615 0.00 0.00 39.95 3.32
6762 8637 8.147704 TCTGTCAAGACACAAATGTATCTAACA 58.852 33.333 0.00 8.69 39.95 2.41
6763 8638 8.534333 TCTGTCAAGACACAAATGTATCTAAC 57.466 34.615 0.00 0.00 39.95 2.34
6764 8639 9.371136 GATCTGTCAAGACACAAATGTATCTAA 57.629 33.333 0.00 0.00 39.95 2.10
6765 8640 8.753133 AGATCTGTCAAGACACAAATGTATCTA 58.247 33.333 0.00 0.00 39.95 1.98
6766 8641 7.619050 AGATCTGTCAAGACACAAATGTATCT 58.381 34.615 0.00 0.00 39.95 1.98
6767 8642 7.840342 AGATCTGTCAAGACACAAATGTATC 57.160 36.000 0.00 0.00 39.95 2.24
6768 8643 9.376075 CTTAGATCTGTCAAGACACAAATGTAT 57.624 33.333 5.18 0.00 39.95 2.29
6769 8644 8.585018 TCTTAGATCTGTCAAGACACAAATGTA 58.415 33.333 5.18 0.00 39.95 2.29
6778 8653 9.646427 AATTAGTTGTCTTAGATCTGTCAAGAC 57.354 33.333 22.14 22.14 45.41 3.01
6810 8685 2.158295 GGCCTCTATTCTACTCCCTCCA 60.158 54.545 0.00 0.00 0.00 3.86
6851 8726 8.360390 ACTTTTGGTTTCCTCATAGAAATTGTC 58.640 33.333 0.00 0.00 38.01 3.18
6875 8750 7.998580 TGTTACCGTTTCCTTTTTCAAATACT 58.001 30.769 0.00 0.00 0.00 2.12
6876 8751 8.806177 ATGTTACCGTTTCCTTTTTCAAATAC 57.194 30.769 0.00 0.00 0.00 1.89
6893 8768 1.201987 GGCACTGCGTTAATGTTACCG 60.202 52.381 0.00 0.00 0.00 4.02
6902 8777 1.606668 CCTCTTTTTGGCACTGCGTTA 59.393 47.619 0.00 0.00 0.00 3.18
6963 8838 6.423604 AGCCGTTCCAAACTATTCAAAATTTG 59.576 34.615 0.00 0.00 32.89 2.32
7026 8902 2.293122 GCTGTGCTGTGTTCAAATACCA 59.707 45.455 0.00 0.00 0.00 3.25
7088 8964 1.975660 CAGGGTTCAAAAACTCCGGA 58.024 50.000 2.93 2.93 36.44 5.14
7089 8965 0.313987 GCAGGGTTCAAAAACTCCGG 59.686 55.000 0.00 0.00 36.44 5.14
7091 8967 4.929819 TTAAGCAGGGTTCAAAAACTCC 57.070 40.909 0.00 0.00 36.44 3.85
7342 9263 4.017808 AGCTACAGTCTACAAGGTACAGG 58.982 47.826 0.00 0.00 0.00 4.00
7492 9413 5.529060 CCATTTATTAGTGAAGCCTCAGGTC 59.471 44.000 0.00 0.00 30.14 3.85
7496 9417 7.669722 AGAAAACCATTTATTAGTGAAGCCTCA 59.330 33.333 0.00 0.00 0.00 3.86
7524 9445 3.221771 AGGAGTACTGAGCTATGCTGAG 58.778 50.000 0.00 4.59 45.01 3.35
7537 9458 0.834687 TTTGGGACGGCAGGAGTACT 60.835 55.000 0.00 0.00 0.00 2.73
7538 9459 0.035739 TTTTGGGACGGCAGGAGTAC 59.964 55.000 0.00 0.00 0.00 2.73
7539 9460 0.988832 ATTTTGGGACGGCAGGAGTA 59.011 50.000 0.00 0.00 0.00 2.59
7540 9461 0.112412 AATTTTGGGACGGCAGGAGT 59.888 50.000 0.00 0.00 0.00 3.85
7541 9462 0.811281 GAATTTTGGGACGGCAGGAG 59.189 55.000 0.00 0.00 0.00 3.69
7542 9463 0.404040 AGAATTTTGGGACGGCAGGA 59.596 50.000 0.00 0.00 0.00 3.86
7543 9464 1.067635 CAAGAATTTTGGGACGGCAGG 60.068 52.381 0.00 0.00 0.00 4.85
7544 9465 1.613437 ACAAGAATTTTGGGACGGCAG 59.387 47.619 0.00 0.00 0.00 4.85
7545 9466 1.611491 GACAAGAATTTTGGGACGGCA 59.389 47.619 0.00 0.00 0.00 5.69
7546 9467 1.886542 AGACAAGAATTTTGGGACGGC 59.113 47.619 0.00 0.00 0.00 5.68
7547 9468 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
7548 9469 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
7549 9470 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
7550 9471 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
7551 9472 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
7559 9480 9.392259 TCGTATCTAGACAAATCTAAGACAAGA 57.608 33.333 0.00 0.00 36.98 3.02
7562 9483 9.952188 CATTCGTATCTAGACAAATCTAAGACA 57.048 33.333 0.00 0.00 36.98 3.41
7563 9484 9.953697 ACATTCGTATCTAGACAAATCTAAGAC 57.046 33.333 0.00 0.00 36.98 3.01
7573 9494 9.993454 AGTACTACATACATTCGTATCTAGACA 57.007 33.333 0.00 0.00 36.11 3.41
7594 9515 9.601217 GGATGTATCAAGTCATGTTTTAGTACT 57.399 33.333 0.00 0.00 0.00 2.73
7595 9516 8.540492 CGGATGTATCAAGTCATGTTTTAGTAC 58.460 37.037 0.00 0.00 0.00 2.73
7596 9517 8.255206 ACGGATGTATCAAGTCATGTTTTAGTA 58.745 33.333 0.00 0.00 0.00 1.82
7597 9518 7.103641 ACGGATGTATCAAGTCATGTTTTAGT 58.896 34.615 0.00 0.00 0.00 2.24
7598 9519 7.539712 ACGGATGTATCAAGTCATGTTTTAG 57.460 36.000 0.00 0.00 0.00 1.85
7599 9520 9.607988 AATACGGATGTATCAAGTCATGTTTTA 57.392 29.630 0.00 0.00 40.42 1.52
7600 9521 8.506168 AATACGGATGTATCAAGTCATGTTTT 57.494 30.769 0.00 0.00 40.42 2.43
7601 9522 8.506168 AAATACGGATGTATCAAGTCATGTTT 57.494 30.769 0.00 0.00 40.42 2.83
7602 9523 9.261180 CTAAATACGGATGTATCAAGTCATGTT 57.739 33.333 0.00 0.00 40.42 2.71
7603 9524 8.638873 TCTAAATACGGATGTATCAAGTCATGT 58.361 33.333 0.00 0.00 40.42 3.21
7604 9525 8.916654 GTCTAAATACGGATGTATCAAGTCATG 58.083 37.037 0.00 0.00 40.42 3.07
7605 9526 8.638873 TGTCTAAATACGGATGTATCAAGTCAT 58.361 33.333 0.00 0.00 40.42 3.06
7606 9527 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
7607 9528 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
7608 9529 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
7615 9536 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
7616 9537 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
7618 9539 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
7619 9540 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
7627 9548 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
7628 9549 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
7629 9550 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
7630 9551 8.359642 TGTCCCAAAATTCTTGTCTTAGATTTG 58.640 33.333 0.00 0.00 29.84 2.32
7631 9552 8.477419 TGTCCCAAAATTCTTGTCTTAGATTT 57.523 30.769 0.00 0.00 0.00 2.17
7632 9553 7.944554 TCTGTCCCAAAATTCTTGTCTTAGATT 59.055 33.333 0.00 0.00 0.00 2.40
7633 9554 7.461749 TCTGTCCCAAAATTCTTGTCTTAGAT 58.538 34.615 0.00 0.00 0.00 1.98
7634 9555 6.837312 TCTGTCCCAAAATTCTTGTCTTAGA 58.163 36.000 0.00 0.00 0.00 2.10
7635 9556 6.150140 CCTCTGTCCCAAAATTCTTGTCTTAG 59.850 42.308 0.00 0.00 0.00 2.18
7636 9557 6.003950 CCTCTGTCCCAAAATTCTTGTCTTA 58.996 40.000 0.00 0.00 0.00 2.10
7637 9558 4.829492 CCTCTGTCCCAAAATTCTTGTCTT 59.171 41.667 0.00 0.00 0.00 3.01
7638 9559 4.401925 CCTCTGTCCCAAAATTCTTGTCT 58.598 43.478 0.00 0.00 0.00 3.41
7639 9560 3.507622 CCCTCTGTCCCAAAATTCTTGTC 59.492 47.826 0.00 0.00 0.00 3.18
7640 9561 3.140144 TCCCTCTGTCCCAAAATTCTTGT 59.860 43.478 0.00 0.00 0.00 3.16
7641 9562 3.760684 CTCCCTCTGTCCCAAAATTCTTG 59.239 47.826 0.00 0.00 0.00 3.02
7642 9563 3.399305 ACTCCCTCTGTCCCAAAATTCTT 59.601 43.478 0.00 0.00 0.00 2.52
7643 9564 2.989571 ACTCCCTCTGTCCCAAAATTCT 59.010 45.455 0.00 0.00 0.00 2.40
7644 9565 3.441500 ACTCCCTCTGTCCCAAAATTC 57.558 47.619 0.00 0.00 0.00 2.17
7645 9566 5.536497 AATACTCCCTCTGTCCCAAAATT 57.464 39.130 0.00 0.00 0.00 1.82
7646 9567 6.848562 ATAATACTCCCTCTGTCCCAAAAT 57.151 37.500 0.00 0.00 0.00 1.82
7647 9568 6.906901 AGTATAATACTCCCTCTGTCCCAAAA 59.093 38.462 0.00 0.00 32.47 2.44
7648 9569 6.326583 CAGTATAATACTCCCTCTGTCCCAAA 59.673 42.308 0.00 0.00 36.76 3.28
7649 9570 5.839063 CAGTATAATACTCCCTCTGTCCCAA 59.161 44.000 0.00 0.00 36.76 4.12
7650 9571 5.103215 ACAGTATAATACTCCCTCTGTCCCA 60.103 44.000 0.00 0.00 36.76 4.37
7651 9572 5.244178 CACAGTATAATACTCCCTCTGTCCC 59.756 48.000 0.00 0.00 36.76 4.46
7652 9573 6.069331 TCACAGTATAATACTCCCTCTGTCC 58.931 44.000 0.00 0.00 36.76 4.02
7653 9574 7.584122 TTCACAGTATAATACTCCCTCTGTC 57.416 40.000 0.00 0.00 36.76 3.51
7654 9575 7.399191 TGTTTCACAGTATAATACTCCCTCTGT 59.601 37.037 0.00 0.00 36.76 3.41
7655 9576 7.782049 TGTTTCACAGTATAATACTCCCTCTG 58.218 38.462 0.00 0.00 36.76 3.35
7656 9577 7.973048 TGTTTCACAGTATAATACTCCCTCT 57.027 36.000 0.00 0.00 36.76 3.69
7657 9578 8.258708 ACTTGTTTCACAGTATAATACTCCCTC 58.741 37.037 0.00 0.00 36.76 4.30
7658 9579 8.147244 ACTTGTTTCACAGTATAATACTCCCT 57.853 34.615 0.00 0.00 36.76 4.20
7684 9608 6.321181 TCACAAACTGTTCCTTAAGCAAAGAT 59.679 34.615 0.00 0.00 37.38 2.40
7722 9646 8.044309 TCGTGGTCAATATTATCTTTTCCTGAA 58.956 33.333 0.00 0.00 0.00 3.02
7759 9683 5.135383 TCCAGCATCTTTAATAGCATTGCT 58.865 37.500 16.63 16.63 43.41 3.91
7760 9684 5.443185 TCCAGCATCTTTAATAGCATTGC 57.557 39.130 0.00 0.00 0.00 3.56
8018 9943 4.267928 CGGTCGATGGAGAAATTACAGTTC 59.732 45.833 0.00 0.00 0.00 3.01
8130 10055 6.388689 TGAAGGGGCTTCTTTCCTATTATACA 59.611 38.462 0.00 0.00 40.73 2.29
8234 10159 6.238593 GCCACTCAAAATCTCTGATGATTACC 60.239 42.308 0.00 0.00 35.82 2.85
8244 10169 2.574006 TGCTGCCACTCAAAATCTCT 57.426 45.000 0.00 0.00 0.00 3.10
8257 10182 2.185004 TCAGGTTAGTTCTTGCTGCC 57.815 50.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.