Multiple sequence alignment - TraesCS3A01G281500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G281500 chr3A 100.000 2977 0 0 1 2977 510187273 510190249 0.000000e+00 5498.0
1 TraesCS3A01G281500 chr3A 79.675 123 25 0 1028 1150 171173325 171173447 4.090000e-14 89.8
2 TraesCS3A01G281500 chr3B 91.690 1805 83 23 801 2559 506984486 506986269 0.000000e+00 2440.0
3 TraesCS3A01G281500 chr3B 93.072 332 17 2 478 803 506984112 506984443 5.770000e-132 481.0
4 TraesCS3A01G281500 chr3B 81.667 120 22 0 1031 1150 228209849 228209730 1.890000e-17 100.0
5 TraesCS3A01G281500 chr3D 91.681 1731 77 33 817 2524 389265401 389267087 0.000000e+00 2337.0
6 TraesCS3A01G281500 chr3D 91.613 620 43 7 2 617 389263151 389263765 0.000000e+00 848.0
7 TraesCS3A01G281500 chr3D 95.455 44 2 0 2526 2569 389267739 389267782 1.480000e-08 71.3
8 TraesCS3A01G281500 chr1B 74.912 283 64 7 1480 1758 676746682 676746961 4.030000e-24 122.0
9 TraesCS3A01G281500 chr1D 73.702 289 63 13 1480 1758 486014611 486014896 1.890000e-17 100.0
10 TraesCS3A01G281500 chr1D 83.146 89 10 2 2548 2631 222028423 222028511 3.180000e-10 76.8
11 TraesCS3A01G281500 chr6D 80.833 120 23 0 1031 1150 3026077 3025958 8.780000e-16 95.3
12 TraesCS3A01G281500 chr4A 81.356 118 14 5 2551 2662 153601414 153601299 4.090000e-14 89.8
13 TraesCS3A01G281500 chr1A 73.010 289 65 13 1480 1758 583604877 583605162 4.090000e-14 89.8
14 TraesCS3A01G281500 chr4D 86.842 76 5 2 2561 2631 437825530 437825605 2.460000e-11 80.5
15 TraesCS3A01G281500 chr5B 80.851 94 12 5 2561 2649 684049322 684049414 5.320000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G281500 chr3A 510187273 510190249 2976 False 5498.000000 5498 100.000000 1 2977 1 chr3A.!!$F2 2976
1 TraesCS3A01G281500 chr3B 506984112 506986269 2157 False 1460.500000 2440 92.381000 478 2559 2 chr3B.!!$F1 2081
2 TraesCS3A01G281500 chr3D 389263151 389267782 4631 False 1085.433333 2337 92.916333 2 2569 3 chr3D.!!$F1 2567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 2452 0.247736 ATCCGTTGAGTGTCTCAGGC 59.752 55.0 0.0 0.0 41.75 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2747 4910 0.038021 TGATGTGTGGGTGTCCATGG 59.962 55.0 4.97 4.97 46.09 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.125695 GTAGGCGCCTCGTCGGTT 62.126 66.667 36.73 9.44 36.23 4.44
50 51 2.441375 TCCTCTGACCATTCAACCACAA 59.559 45.455 0.00 0.00 0.00 3.33
51 52 2.554032 CCTCTGACCATTCAACCACAAC 59.446 50.000 0.00 0.00 0.00 3.32
65 66 1.134175 CCACAACTTGGTTCGCTGTTT 59.866 47.619 0.00 0.00 41.10 2.83
90 91 8.071177 TGACCCTATTTTTAGTGGTACTAGAC 57.929 38.462 0.00 0.00 31.47 2.59
99 100 7.843490 TTTAGTGGTACTAGACAATTGCATC 57.157 36.000 5.05 0.00 31.47 3.91
268 273 9.180678 GGAAATACTATGTTTTTATTCGGCATG 57.819 33.333 0.00 0.00 0.00 4.06
351 356 8.958119 AAACCCAAAAGATAAAAGGAAGAAAC 57.042 30.769 0.00 0.00 0.00 2.78
365 370 5.386060 AGGAAGAAACTTAAAACAGGGAGG 58.614 41.667 0.00 0.00 0.00 4.30
368 373 2.992847 AACTTAAAACAGGGAGGGGG 57.007 50.000 0.00 0.00 0.00 5.40
369 374 0.408309 ACTTAAAACAGGGAGGGGGC 59.592 55.000 0.00 0.00 0.00 5.80
383 388 3.846430 GGGCGGGGAGAACGTAGG 61.846 72.222 0.00 0.00 0.00 3.18
385 390 4.525949 GCGGGGAGAACGTAGGGC 62.526 72.222 0.00 0.00 0.00 5.19
404 409 1.403249 GCGGTAAGCTTAACAGGACGA 60.403 52.381 21.09 0.00 44.04 4.20
468 473 2.438021 TGGTCTTGAGTTGTAGTGCCTT 59.562 45.455 0.00 0.00 0.00 4.35
469 474 3.118038 TGGTCTTGAGTTGTAGTGCCTTT 60.118 43.478 0.00 0.00 0.00 3.11
506 511 2.503356 AGATGAGGAAGGTGGTGATCAC 59.497 50.000 17.91 17.91 45.34 3.06
542 547 2.416547 TGAAGCGCTGAGATAAGTTTGC 59.583 45.455 12.58 0.00 0.00 3.68
546 551 1.992667 CGCTGAGATAAGTTTGCGACA 59.007 47.619 0.00 0.00 45.15 4.35
570 575 1.080638 ATTTGGGTGGCCAAGGTCTA 58.919 50.000 7.24 0.00 0.00 2.59
602 2005 3.243941 TGTCAAAAAGATTCTCCGTCGGA 60.244 43.478 14.54 14.54 0.00 4.55
654 2057 9.565213 CATTTCTTTTACTCCATCAATCAAGAC 57.435 33.333 0.00 0.00 0.00 3.01
656 2059 7.912056 TCTTTTACTCCATCAATCAAGACAG 57.088 36.000 0.00 0.00 0.00 3.51
787 2196 5.924475 AGGCAAAAGACATATATACACGC 57.076 39.130 0.00 0.00 0.00 5.34
807 2216 3.056952 CGCAGCATCTACATTGGTTTC 57.943 47.619 0.00 0.00 0.00 2.78
808 2217 2.223340 CGCAGCATCTACATTGGTTTCC 60.223 50.000 0.00 0.00 0.00 3.13
809 2218 3.019564 GCAGCATCTACATTGGTTTCCT 58.980 45.455 0.00 0.00 0.00 3.36
814 2268 4.202441 CATCTACATTGGTTTCCTGAGGG 58.798 47.826 0.00 0.00 0.00 4.30
815 2269 2.576191 TCTACATTGGTTTCCTGAGGGG 59.424 50.000 0.00 0.00 0.00 4.79
826 2280 1.702957 TCCTGAGGGGAAAACGTTCAT 59.297 47.619 0.00 0.00 41.91 2.57
932 2400 2.102553 GCGAGCGTGAGACTACCC 59.897 66.667 0.00 0.00 0.00 3.69
934 2402 1.136984 CGAGCGTGAGACTACCCAC 59.863 63.158 0.00 0.00 0.00 4.61
954 2430 1.300931 GCACTCAGCACCTTCGTCA 60.301 57.895 0.00 0.00 44.79 4.35
976 2452 0.247736 ATCCGTTGAGTGTCTCAGGC 59.752 55.000 0.00 0.00 41.75 4.85
1011 2487 2.969238 GATCTGATGGCGGCACCG 60.969 66.667 16.34 4.30 43.94 4.94
1172 2651 1.172700 CGTCGTCGATCTTCAGTTCG 58.827 55.000 0.00 1.53 39.71 3.95
1176 2655 1.905687 CGTCGATCTTCAGTTCGTCAC 59.094 52.381 7.08 0.00 38.15 3.67
1184 2667 3.327754 AGTTCGTCACACGCACGC 61.328 61.111 0.00 0.00 42.31 5.34
1196 2679 3.913573 GCACGCGCGTCCTATGTG 61.914 66.667 35.61 21.21 0.00 3.21
1201 2684 3.312504 CGCGTCCTATGTGCGTCG 61.313 66.667 0.00 0.00 46.29 5.12
1210 2693 0.389296 TATGTGCGTCGTGTGGAAGG 60.389 55.000 0.00 0.00 0.00 3.46
1221 2704 3.552384 TGGAAGGAACGCCACGGT 61.552 61.111 0.00 0.00 33.11 4.83
1330 2815 0.234884 CGCGTGTTTCTTGTCCCTTC 59.765 55.000 0.00 0.00 0.00 3.46
1331 2816 1.594331 GCGTGTTTCTTGTCCCTTCT 58.406 50.000 0.00 0.00 0.00 2.85
1332 2817 1.947456 GCGTGTTTCTTGTCCCTTCTT 59.053 47.619 0.00 0.00 0.00 2.52
1661 3146 1.987855 CAAGGTCTACTCCGGCCCA 60.988 63.158 0.00 0.00 0.00 5.36
1989 3474 2.359169 GGGTGATCGAGTGGCCTCA 61.359 63.158 3.32 0.00 37.59 3.86
1992 3477 0.249657 GTGATCGAGTGGCCTCATCC 60.250 60.000 3.32 0.00 37.59 3.51
2067 3552 6.857964 TGTTTCGCAATCAGAAAGATCTTTTC 59.142 34.615 21.33 14.07 38.15 2.29
2120 3605 4.678287 AGTTCAACGTGTAATCGTACTGTG 59.322 41.667 0.00 0.00 43.38 3.66
2155 3640 1.006043 TGGTTGGAAGTTGTTGGGTCA 59.994 47.619 0.00 0.00 0.00 4.02
2218 3703 2.150397 AGTGGTTTCTGACGTGCTAC 57.850 50.000 0.00 0.00 0.00 3.58
2229 3714 4.567959 TCTGACGTGCTACATGATTGATTG 59.432 41.667 0.00 0.00 0.00 2.67
2256 3741 6.255453 TGCTTGAATTAAACTGTTTCTTGCAC 59.745 34.615 9.38 0.00 0.00 4.57
2257 3742 6.255453 GCTTGAATTAAACTGTTTCTTGCACA 59.745 34.615 9.38 2.09 0.00 4.57
2258 3743 7.518731 TTGAATTAAACTGTTTCTTGCACAC 57.481 32.000 9.38 0.00 0.00 3.82
2262 3747 2.919666 ACTGTTTCTTGCACACACAC 57.080 45.000 0.00 0.00 0.00 3.82
2263 3748 2.158559 ACTGTTTCTTGCACACACACA 58.841 42.857 0.00 0.00 0.00 3.72
2264 3749 2.095263 ACTGTTTCTTGCACACACACAC 60.095 45.455 0.00 0.00 0.00 3.82
2269 3754 3.214697 TCTTGCACACACACACAAAAG 57.785 42.857 0.00 0.00 0.00 2.27
2278 3763 6.697019 GCACACACACACAAAAGATCTTATTT 59.303 34.615 8.75 0.00 0.00 1.40
2346 3834 1.202521 AGTGATGTTGCACGTGACAGA 60.203 47.619 22.23 2.85 43.42 3.41
2358 3846 4.275196 GCACGTGACAGACCTATATGTAGA 59.725 45.833 22.23 0.00 27.82 2.59
2391 3879 5.173131 CAGTCAAAACGCTAATCAAAACCAC 59.827 40.000 0.00 0.00 0.00 4.16
2392 3880 5.067283 AGTCAAAACGCTAATCAAAACCACT 59.933 36.000 0.00 0.00 0.00 4.00
2393 3881 5.398416 GTCAAAACGCTAATCAAAACCACTC 59.602 40.000 0.00 0.00 0.00 3.51
2394 3882 4.499037 AAACGCTAATCAAAACCACTCC 57.501 40.909 0.00 0.00 0.00 3.85
2395 3883 2.073816 ACGCTAATCAAAACCACTCCG 58.926 47.619 0.00 0.00 0.00 4.63
2396 3884 1.202031 CGCTAATCAAAACCACTCCGC 60.202 52.381 0.00 0.00 0.00 5.54
2397 3885 1.132453 GCTAATCAAAACCACTCCGCC 59.868 52.381 0.00 0.00 0.00 6.13
2398 3886 1.396996 CTAATCAAAACCACTCCGCCG 59.603 52.381 0.00 0.00 0.00 6.46
2399 3887 0.250553 AATCAAAACCACTCCGCCGA 60.251 50.000 0.00 0.00 0.00 5.54
2400 3888 0.250553 ATCAAAACCACTCCGCCGAA 60.251 50.000 0.00 0.00 0.00 4.30
2401 3889 1.161563 TCAAAACCACTCCGCCGAAC 61.162 55.000 0.00 0.00 0.00 3.95
2402 3890 1.147600 AAAACCACTCCGCCGAACT 59.852 52.632 0.00 0.00 0.00 3.01
2403 3891 0.464916 AAAACCACTCCGCCGAACTT 60.465 50.000 0.00 0.00 0.00 2.66
2404 3892 1.164041 AAACCACTCCGCCGAACTTG 61.164 55.000 0.00 0.00 0.00 3.16
2431 3933 4.277672 GTGGGAACTGAACCTTAACCTTTC 59.722 45.833 0.00 0.00 0.00 2.62
2444 3957 1.256812 ACCTTTCAATCCCGCCTTTG 58.743 50.000 0.00 0.00 0.00 2.77
2457 3970 2.753966 CCTTTGCGCACTGATCCCG 61.754 63.158 11.12 0.00 0.00 5.14
2468 3981 1.938657 CTGATCCCGATCGATCCCGG 61.939 65.000 18.66 17.87 44.94 5.73
2484 3997 3.443045 GGCCCTGGTTGATGCACG 61.443 66.667 0.00 0.00 0.00 5.34
2559 4722 4.227300 TGGCCCACATGTTATACTCTCTTT 59.773 41.667 0.00 0.00 0.00 2.52
2569 4732 6.942976 TGTTATACTCTCTTTGTCCGGAATT 58.057 36.000 5.23 0.00 0.00 2.17
2570 4733 8.070034 TGTTATACTCTCTTTGTCCGGAATTA 57.930 34.615 5.23 0.00 0.00 1.40
2571 4734 7.977853 TGTTATACTCTCTTTGTCCGGAATTAC 59.022 37.037 5.23 0.00 0.00 1.89
2572 4735 6.793505 ATACTCTCTTTGTCCGGAATTACT 57.206 37.500 5.23 0.00 0.00 2.24
2573 4736 5.485209 ACTCTCTTTGTCCGGAATTACTT 57.515 39.130 5.23 0.00 0.00 2.24
2574 4737 5.238583 ACTCTCTTTGTCCGGAATTACTTG 58.761 41.667 5.23 0.00 0.00 3.16
2575 4738 5.221661 ACTCTCTTTGTCCGGAATTACTTGT 60.222 40.000 5.23 0.00 0.00 3.16
2576 4739 5.235516 TCTCTTTGTCCGGAATTACTTGTC 58.764 41.667 5.23 0.00 0.00 3.18
2577 4740 3.991773 TCTTTGTCCGGAATTACTTGTCG 59.008 43.478 5.23 0.00 0.00 4.35
2578 4741 3.389925 TTGTCCGGAATTACTTGTCGT 57.610 42.857 5.23 0.00 0.00 4.34
2579 4742 4.517952 TTGTCCGGAATTACTTGTCGTA 57.482 40.909 5.23 0.00 0.00 3.43
2580 4743 4.724074 TGTCCGGAATTACTTGTCGTAT 57.276 40.909 5.23 0.00 0.00 3.06
2581 4744 5.833406 TGTCCGGAATTACTTGTCGTATA 57.167 39.130 5.23 0.00 0.00 1.47
2582 4745 6.206395 TGTCCGGAATTACTTGTCGTATAA 57.794 37.500 5.23 0.00 0.00 0.98
2583 4746 6.629128 TGTCCGGAATTACTTGTCGTATAAA 58.371 36.000 5.23 0.00 0.00 1.40
2584 4747 7.267128 TGTCCGGAATTACTTGTCGTATAAAT 58.733 34.615 5.23 0.00 0.00 1.40
2585 4748 7.223193 TGTCCGGAATTACTTGTCGTATAAATG 59.777 37.037 5.23 0.00 0.00 2.32
2586 4749 6.702723 TCCGGAATTACTTGTCGTATAAATGG 59.297 38.462 0.00 0.00 0.00 3.16
2587 4750 6.702723 CCGGAATTACTTGTCGTATAAATGGA 59.297 38.462 0.00 0.00 0.00 3.41
2588 4751 7.386848 CCGGAATTACTTGTCGTATAAATGGAT 59.613 37.037 0.00 0.00 0.00 3.41
2589 4752 9.414295 CGGAATTACTTGTCGTATAAATGGATA 57.586 33.333 0.00 0.00 0.00 2.59
2599 4762 9.443323 TGTCGTATAAATGGATAAATATGGGTG 57.557 33.333 0.00 0.00 0.00 4.61
2600 4763 9.444600 GTCGTATAAATGGATAAATATGGGTGT 57.555 33.333 0.00 0.00 0.00 4.16
2610 4773 9.841295 TGGATAAATATGGGTGTAGACTAAAAC 57.159 33.333 0.00 0.00 0.00 2.43
2611 4774 9.841295 GGATAAATATGGGTGTAGACTAAAACA 57.159 33.333 0.00 0.00 0.00 2.83
2619 4782 9.656323 ATGGGTGTAGACTAAAACATATCTAGA 57.344 33.333 0.00 0.00 0.00 2.43
2620 4783 9.656323 TGGGTGTAGACTAAAACATATCTAGAT 57.344 33.333 10.73 10.73 0.00 1.98
2638 4801 8.594881 ATCTAGATACATCCATTTGTTTCGAC 57.405 34.615 2.53 0.00 34.14 4.20
2639 4802 7.552459 TCTAGATACATCCATTTGTTTCGACA 58.448 34.615 0.00 0.00 34.14 4.35
2640 4803 8.038351 TCTAGATACATCCATTTGTTTCGACAA 58.962 33.333 0.00 0.00 34.14 3.18
2641 4804 7.447374 AGATACATCCATTTGTTTCGACAAA 57.553 32.000 7.11 7.11 42.79 2.83
2643 4806 9.173021 AGATACATCCATTTGTTTCGACAAATA 57.827 29.630 14.88 4.21 45.34 1.40
2644 4807 9.781834 GATACATCCATTTGTTTCGACAAATAA 57.218 29.630 14.88 8.65 45.34 1.40
2647 4810 9.139174 ACATCCATTTGTTTCGACAAATAATTC 57.861 29.630 14.88 0.00 45.34 2.17
2648 4811 8.594687 CATCCATTTGTTTCGACAAATAATTCC 58.405 33.333 14.88 0.00 45.34 3.01
2649 4812 7.661968 TCCATTTGTTTCGACAAATAATTCCA 58.338 30.769 14.88 0.00 45.34 3.53
2650 4813 8.144478 TCCATTTGTTTCGACAAATAATTCCAA 58.856 29.630 14.88 0.00 45.34 3.53
2651 4814 8.768955 CCATTTGTTTCGACAAATAATTCCAAA 58.231 29.630 14.88 0.00 45.34 3.28
2652 4815 9.796062 CATTTGTTTCGACAAATAATTCCAAAG 57.204 29.630 14.88 0.05 45.34 2.77
2653 4816 7.938563 TTGTTTCGACAAATAATTCCAAAGG 57.061 32.000 0.00 0.00 0.00 3.11
2654 4817 6.451393 TGTTTCGACAAATAATTCCAAAGGG 58.549 36.000 0.00 0.00 0.00 3.95
2655 4818 6.041069 TGTTTCGACAAATAATTCCAAAGGGT 59.959 34.615 0.00 0.00 34.93 4.34
2656 4819 5.637006 TCGACAAATAATTCCAAAGGGTG 57.363 39.130 0.00 0.00 34.93 4.61
2668 4831 4.526438 CCAAAGGGTGGGAGATTATCTT 57.474 45.455 0.00 0.00 44.64 2.40
2669 4832 4.464947 CCAAAGGGTGGGAGATTATCTTC 58.535 47.826 0.00 0.00 44.64 2.87
2670 4833 4.079787 CCAAAGGGTGGGAGATTATCTTCA 60.080 45.833 2.62 0.00 44.64 3.02
2671 4834 5.399497 CCAAAGGGTGGGAGATTATCTTCAT 60.399 44.000 2.62 0.00 44.64 2.57
2672 4835 5.574970 AAGGGTGGGAGATTATCTTCATC 57.425 43.478 2.62 2.61 0.00 2.92
2673 4836 3.913163 AGGGTGGGAGATTATCTTCATCC 59.087 47.826 15.92 15.92 33.96 3.51
2674 4837 3.913163 GGGTGGGAGATTATCTTCATCCT 59.087 47.826 16.22 0.00 32.30 3.24
2675 4838 4.019771 GGGTGGGAGATTATCTTCATCCTC 60.020 50.000 16.22 8.75 32.30 3.71
2676 4839 4.322349 GGTGGGAGATTATCTTCATCCTCG 60.322 50.000 2.62 0.00 0.00 4.63
2677 4840 4.282195 GTGGGAGATTATCTTCATCCTCGT 59.718 45.833 2.62 0.00 0.00 4.18
2678 4841 4.901849 TGGGAGATTATCTTCATCCTCGTT 59.098 41.667 2.62 0.00 0.00 3.85
2679 4842 5.221521 TGGGAGATTATCTTCATCCTCGTTG 60.222 44.000 2.62 0.00 0.00 4.10
2680 4843 4.688413 GGAGATTATCTTCATCCTCGTTGC 59.312 45.833 0.00 0.00 0.00 4.17
2681 4844 4.636249 AGATTATCTTCATCCTCGTTGCC 58.364 43.478 0.00 0.00 0.00 4.52
2682 4845 2.509052 TATCTTCATCCTCGTTGCCG 57.491 50.000 0.00 0.00 0.00 5.69
2683 4846 0.537188 ATCTTCATCCTCGTTGCCGT 59.463 50.000 0.00 0.00 35.01 5.68
2684 4847 1.179152 TCTTCATCCTCGTTGCCGTA 58.821 50.000 0.00 0.00 35.01 4.02
2685 4848 1.134367 TCTTCATCCTCGTTGCCGTAG 59.866 52.381 0.00 0.00 35.01 3.51
2686 4849 1.134367 CTTCATCCTCGTTGCCGTAGA 59.866 52.381 0.00 0.00 35.01 2.59
2687 4850 1.179152 TCATCCTCGTTGCCGTAGAA 58.821 50.000 0.00 0.00 35.01 2.10
2688 4851 1.135199 TCATCCTCGTTGCCGTAGAAC 60.135 52.381 0.00 0.00 35.01 3.01
2689 4852 1.135083 CATCCTCGTTGCCGTAGAACT 60.135 52.381 0.00 0.00 35.01 3.01
2690 4853 0.242825 TCCTCGTTGCCGTAGAACTG 59.757 55.000 0.00 0.00 35.01 3.16
2691 4854 0.242825 CCTCGTTGCCGTAGAACTGA 59.757 55.000 0.00 0.00 35.01 3.41
2692 4855 1.135083 CCTCGTTGCCGTAGAACTGAT 60.135 52.381 0.00 0.00 35.01 2.90
2693 4856 2.186076 CTCGTTGCCGTAGAACTGATC 58.814 52.381 0.00 0.00 35.01 2.92
2694 4857 1.542472 TCGTTGCCGTAGAACTGATCA 59.458 47.619 0.00 0.00 35.01 2.92
2695 4858 1.654105 CGTTGCCGTAGAACTGATCAC 59.346 52.381 0.00 0.00 0.00 3.06
2696 4859 2.683968 GTTGCCGTAGAACTGATCACA 58.316 47.619 0.00 0.00 0.00 3.58
2697 4860 3.262420 GTTGCCGTAGAACTGATCACAT 58.738 45.455 0.00 0.00 0.00 3.21
2698 4861 3.165058 TGCCGTAGAACTGATCACATC 57.835 47.619 0.00 0.00 0.00 3.06
2699 4862 2.120232 GCCGTAGAACTGATCACATCG 58.880 52.381 0.00 0.00 0.00 3.84
2700 4863 2.120232 CCGTAGAACTGATCACATCGC 58.880 52.381 0.00 0.00 0.00 4.58
2701 4864 1.775770 CGTAGAACTGATCACATCGCG 59.224 52.381 0.00 0.00 0.00 5.87
2702 4865 1.518929 GTAGAACTGATCACATCGCGC 59.481 52.381 0.00 0.00 0.00 6.86
2703 4866 0.108662 AGAACTGATCACATCGCGCA 60.109 50.000 8.75 0.00 0.00 6.09
2704 4867 0.933097 GAACTGATCACATCGCGCAT 59.067 50.000 8.75 0.00 0.00 4.73
2705 4868 0.654160 AACTGATCACATCGCGCATG 59.346 50.000 8.75 12.98 38.64 4.06
2706 4869 0.179103 ACTGATCACATCGCGCATGA 60.179 50.000 21.37 15.02 36.21 3.07
2707 4870 0.231534 CTGATCACATCGCGCATGAC 59.768 55.000 21.37 10.65 36.21 3.06
2718 4881 2.870372 GCATGACGACAAGGGTGC 59.130 61.111 0.00 0.00 0.00 5.01
2719 4882 2.690778 GCATGACGACAAGGGTGCC 61.691 63.158 0.00 0.00 0.00 5.01
2720 4883 1.302431 CATGACGACAAGGGTGCCA 60.302 57.895 0.00 0.00 0.00 4.92
2721 4884 0.888736 CATGACGACAAGGGTGCCAA 60.889 55.000 0.00 0.00 0.00 4.52
2722 4885 0.889186 ATGACGACAAGGGTGCCAAC 60.889 55.000 0.00 0.00 0.00 3.77
2723 4886 1.227853 GACGACAAGGGTGCCAACT 60.228 57.895 0.00 0.00 0.00 3.16
2724 4887 1.507141 GACGACAAGGGTGCCAACTG 61.507 60.000 0.00 0.00 0.00 3.16
2725 4888 2.908073 CGACAAGGGTGCCAACTGC 61.908 63.158 0.00 0.00 41.77 4.40
2734 4897 3.169198 GCCAACTGCACTAGCGTC 58.831 61.111 0.00 0.00 46.23 5.19
2735 4898 2.391389 GCCAACTGCACTAGCGTCC 61.391 63.158 0.00 0.00 46.23 4.79
2736 4899 1.293498 CCAACTGCACTAGCGTCCT 59.707 57.895 0.00 0.00 46.23 3.85
2737 4900 0.530744 CCAACTGCACTAGCGTCCTA 59.469 55.000 0.00 0.00 46.23 2.94
2738 4901 1.137086 CCAACTGCACTAGCGTCCTAT 59.863 52.381 0.00 0.00 46.23 2.57
2739 4902 2.418746 CCAACTGCACTAGCGTCCTATT 60.419 50.000 0.00 0.00 46.23 1.73
2740 4903 2.860735 CAACTGCACTAGCGTCCTATTC 59.139 50.000 0.00 0.00 46.23 1.75
2741 4904 2.100197 ACTGCACTAGCGTCCTATTCA 58.900 47.619 0.00 0.00 46.23 2.57
2742 4905 2.496070 ACTGCACTAGCGTCCTATTCAA 59.504 45.455 0.00 0.00 46.23 2.69
2743 4906 2.860735 CTGCACTAGCGTCCTATTCAAC 59.139 50.000 0.00 0.00 46.23 3.18
2744 4907 2.496070 TGCACTAGCGTCCTATTCAACT 59.504 45.455 0.00 0.00 46.23 3.16
2745 4908 3.117046 GCACTAGCGTCCTATTCAACTC 58.883 50.000 0.00 0.00 0.00 3.01
2746 4909 3.364062 CACTAGCGTCCTATTCAACTCG 58.636 50.000 0.00 0.00 0.00 4.18
2747 4910 2.223525 ACTAGCGTCCTATTCAACTCGC 60.224 50.000 0.00 0.00 43.16 5.03
2748 4911 0.179108 AGCGTCCTATTCAACTCGCC 60.179 55.000 0.00 0.00 43.73 5.54
2749 4912 0.459585 GCGTCCTATTCAACTCGCCA 60.460 55.000 0.00 0.00 38.16 5.69
2750 4913 1.806623 GCGTCCTATTCAACTCGCCAT 60.807 52.381 0.00 0.00 38.16 4.40
2751 4914 1.860950 CGTCCTATTCAACTCGCCATG 59.139 52.381 0.00 0.00 0.00 3.66
2752 4915 2.213499 GTCCTATTCAACTCGCCATGG 58.787 52.381 7.63 7.63 0.00 3.66
2753 4916 2.115427 TCCTATTCAACTCGCCATGGA 58.885 47.619 18.40 0.00 0.00 3.41
2754 4917 2.158957 TCCTATTCAACTCGCCATGGAC 60.159 50.000 18.40 5.97 0.00 4.02
2755 4918 2.419990 CCTATTCAACTCGCCATGGACA 60.420 50.000 18.40 0.00 0.00 4.02
2756 4919 1.453155 ATTCAACTCGCCATGGACAC 58.547 50.000 18.40 0.00 0.00 3.67
2757 4920 0.605319 TTCAACTCGCCATGGACACC 60.605 55.000 18.40 0.00 0.00 4.16
2758 4921 2.040544 CAACTCGCCATGGACACCC 61.041 63.158 18.40 0.00 0.00 4.61
2760 4923 2.436646 CTCGCCATGGACACCCAC 60.437 66.667 18.40 0.00 46.98 4.61
2761 4924 3.245346 TCGCCATGGACACCCACA 61.245 61.111 18.40 0.00 46.98 4.17
2762 4925 3.055719 CGCCATGGACACCCACAC 61.056 66.667 18.40 0.00 46.98 3.82
2763 4926 2.115052 GCCATGGACACCCACACA 59.885 61.111 18.40 0.00 46.98 3.72
2764 4927 1.304381 GCCATGGACACCCACACAT 60.304 57.895 18.40 0.00 46.98 3.21
2765 4928 1.315257 GCCATGGACACCCACACATC 61.315 60.000 18.40 0.00 46.98 3.06
2766 4929 0.038021 CCATGGACACCCACACATCA 59.962 55.000 5.56 0.00 46.98 3.07
2767 4930 1.456296 CATGGACACCCACACATCAG 58.544 55.000 0.00 0.00 46.98 2.90
2768 4931 0.322816 ATGGACACCCACACATCAGC 60.323 55.000 0.00 0.00 46.98 4.26
2769 4932 1.376466 GGACACCCACACATCAGCT 59.624 57.895 0.00 0.00 0.00 4.24
2770 4933 0.250901 GGACACCCACACATCAGCTT 60.251 55.000 0.00 0.00 0.00 3.74
2771 4934 0.877071 GACACCCACACATCAGCTTG 59.123 55.000 0.00 0.00 0.00 4.01
2772 4935 0.538057 ACACCCACACATCAGCTTGG 60.538 55.000 0.00 0.00 0.00 3.61
2773 4936 1.604593 ACCCACACATCAGCTTGGC 60.605 57.895 0.00 0.00 0.00 4.52
2774 4937 2.345760 CCCACACATCAGCTTGGCC 61.346 63.158 0.00 0.00 0.00 5.36
2775 4938 1.303888 CCACACATCAGCTTGGCCT 60.304 57.895 3.32 0.00 0.00 5.19
2776 4939 0.896940 CCACACATCAGCTTGGCCTT 60.897 55.000 3.32 0.00 0.00 4.35
2777 4940 0.963962 CACACATCAGCTTGGCCTTT 59.036 50.000 3.32 0.00 0.00 3.11
2778 4941 0.963962 ACACATCAGCTTGGCCTTTG 59.036 50.000 3.32 0.00 0.00 2.77
2779 4942 1.250328 CACATCAGCTTGGCCTTTGA 58.750 50.000 3.32 2.75 0.00 2.69
2780 4943 1.201647 CACATCAGCTTGGCCTTTGAG 59.798 52.381 3.32 0.00 0.00 3.02
2781 4944 0.172803 CATCAGCTTGGCCTTTGAGC 59.827 55.000 3.32 8.58 36.68 4.26
2783 4946 0.178981 TCAGCTTGGCCTTTGAGCTT 60.179 50.000 17.06 4.71 43.84 3.74
2784 4947 0.038526 CAGCTTGGCCTTTGAGCTTG 60.039 55.000 17.06 11.04 43.84 4.01
2785 4948 1.183676 AGCTTGGCCTTTGAGCTTGG 61.184 55.000 14.84 0.00 43.84 3.61
2786 4949 1.291272 CTTGGCCTTTGAGCTTGGC 59.709 57.895 3.32 11.05 45.42 4.52
2787 4950 1.152483 TTGGCCTTTGAGCTTGGCT 60.152 52.632 3.32 0.00 45.45 4.75
2788 4951 0.760189 TTGGCCTTTGAGCTTGGCTT 60.760 50.000 3.32 0.00 45.45 4.35
2789 4952 1.291272 GGCCTTTGAGCTTGGCTTG 59.709 57.895 16.57 0.00 45.45 4.01
2790 4953 1.181098 GGCCTTTGAGCTTGGCTTGA 61.181 55.000 16.57 0.00 45.45 3.02
2791 4954 0.243095 GCCTTTGAGCTTGGCTTGAG 59.757 55.000 11.90 0.00 39.88 3.02
2792 4955 0.886563 CCTTTGAGCTTGGCTTGAGG 59.113 55.000 0.00 0.00 39.88 3.86
2793 4956 1.546323 CCTTTGAGCTTGGCTTGAGGA 60.546 52.381 9.54 0.00 39.88 3.71
2794 4957 2.233271 CTTTGAGCTTGGCTTGAGGAA 58.767 47.619 0.00 0.00 39.88 3.36
2795 4958 2.592102 TTGAGCTTGGCTTGAGGAAT 57.408 45.000 0.00 0.00 39.88 3.01
2796 4959 3.719268 TTGAGCTTGGCTTGAGGAATA 57.281 42.857 0.00 0.00 39.88 1.75
2797 4960 3.272574 TGAGCTTGGCTTGAGGAATAG 57.727 47.619 0.00 0.00 39.88 1.73
2798 4961 2.840038 TGAGCTTGGCTTGAGGAATAGA 59.160 45.455 0.00 0.00 39.88 1.98
2799 4962 3.202097 GAGCTTGGCTTGAGGAATAGAC 58.798 50.000 0.00 0.00 39.88 2.59
2800 4963 1.936547 GCTTGGCTTGAGGAATAGACG 59.063 52.381 0.00 0.00 0.00 4.18
2801 4964 2.555199 CTTGGCTTGAGGAATAGACGG 58.445 52.381 0.00 0.00 0.00 4.79
2802 4965 0.830648 TGGCTTGAGGAATAGACGGG 59.169 55.000 0.00 0.00 0.00 5.28
2803 4966 0.533085 GGCTTGAGGAATAGACGGGC 60.533 60.000 0.00 0.00 0.00 6.13
2804 4967 0.876342 GCTTGAGGAATAGACGGGCG 60.876 60.000 0.00 0.00 0.00 6.13
2805 4968 0.876342 CTTGAGGAATAGACGGGCGC 60.876 60.000 0.00 0.00 0.00 6.53
2806 4969 1.609635 TTGAGGAATAGACGGGCGCA 61.610 55.000 10.83 0.00 0.00 6.09
2807 4970 1.591863 GAGGAATAGACGGGCGCAC 60.592 63.158 10.83 3.71 0.00 5.34
2808 4971 2.185867 GGAATAGACGGGCGCACA 59.814 61.111 11.77 0.00 0.00 4.57
2809 4972 2.171725 GGAATAGACGGGCGCACAC 61.172 63.158 11.77 2.42 0.00 3.82
2810 4973 2.125269 AATAGACGGGCGCACACC 60.125 61.111 11.77 0.00 0.00 4.16
2819 4982 4.323477 GCGCACACCCCACCACTA 62.323 66.667 0.30 0.00 0.00 2.74
2820 4983 2.358247 CGCACACCCCACCACTAC 60.358 66.667 0.00 0.00 0.00 2.73
2821 4984 2.033602 GCACACCCCACCACTACC 59.966 66.667 0.00 0.00 0.00 3.18
2822 4985 2.824880 GCACACCCCACCACTACCA 61.825 63.158 0.00 0.00 0.00 3.25
2823 4986 1.072505 CACACCCCACCACTACCAC 59.927 63.158 0.00 0.00 0.00 4.16
2824 4987 2.345991 CACCCCACCACTACCACG 59.654 66.667 0.00 0.00 0.00 4.94
2825 4988 2.122725 ACCCCACCACTACCACGT 60.123 61.111 0.00 0.00 0.00 4.49
2826 4989 1.155859 ACCCCACCACTACCACGTA 59.844 57.895 0.00 0.00 0.00 3.57
2827 4990 0.252375 ACCCCACCACTACCACGTAT 60.252 55.000 0.00 0.00 0.00 3.06
2828 4991 0.177141 CCCCACCACTACCACGTATG 59.823 60.000 0.00 0.00 0.00 2.39
2829 4992 0.899720 CCCACCACTACCACGTATGT 59.100 55.000 0.00 0.00 0.00 2.29
2830 4993 1.134907 CCCACCACTACCACGTATGTC 60.135 57.143 0.00 0.00 0.00 3.06
2831 4994 1.468565 CCACCACTACCACGTATGTCG 60.469 57.143 0.00 0.00 46.00 4.35
2832 4995 0.171903 ACCACTACCACGTATGTCGC 59.828 55.000 0.00 0.00 44.19 5.19
2833 4996 0.171679 CCACTACCACGTATGTCGCA 59.828 55.000 0.00 0.00 44.19 5.10
2834 4997 1.202371 CCACTACCACGTATGTCGCAT 60.202 52.381 0.00 0.00 44.19 4.73
2835 4998 2.117137 CACTACCACGTATGTCGCATC 58.883 52.381 0.00 0.00 44.19 3.91
2836 4999 1.746787 ACTACCACGTATGTCGCATCA 59.253 47.619 0.00 0.00 44.19 3.07
2837 5000 2.361119 ACTACCACGTATGTCGCATCAT 59.639 45.455 0.00 0.00 44.19 2.45
2838 5001 2.309528 ACCACGTATGTCGCATCATT 57.690 45.000 0.00 0.00 44.19 2.57
2839 5002 3.446310 ACCACGTATGTCGCATCATTA 57.554 42.857 0.00 0.00 44.19 1.90
2840 5003 3.787785 ACCACGTATGTCGCATCATTAA 58.212 40.909 0.00 0.00 44.19 1.40
2841 5004 4.377021 ACCACGTATGTCGCATCATTAAT 58.623 39.130 0.00 0.00 44.19 1.40
2842 5005 4.814234 ACCACGTATGTCGCATCATTAATT 59.186 37.500 0.00 0.00 44.19 1.40
2843 5006 5.295787 ACCACGTATGTCGCATCATTAATTT 59.704 36.000 0.00 0.00 44.19 1.82
2844 5007 5.845953 CCACGTATGTCGCATCATTAATTTC 59.154 40.000 0.00 0.00 44.19 2.17
2845 5008 6.292865 CCACGTATGTCGCATCATTAATTTCT 60.293 38.462 0.00 0.00 44.19 2.52
2846 5009 7.125755 CACGTATGTCGCATCATTAATTTCTT 58.874 34.615 0.00 0.00 44.19 2.52
2847 5010 7.639850 CACGTATGTCGCATCATTAATTTCTTT 59.360 33.333 0.00 0.00 44.19 2.52
2848 5011 8.181573 ACGTATGTCGCATCATTAATTTCTTTT 58.818 29.630 0.00 0.00 44.19 2.27
2849 5012 8.673275 CGTATGTCGCATCATTAATTTCTTTTC 58.327 33.333 0.00 0.00 0.00 2.29
2850 5013 9.722056 GTATGTCGCATCATTAATTTCTTTTCT 57.278 29.630 0.00 0.00 0.00 2.52
2852 5015 9.643693 ATGTCGCATCATTAATTTCTTTTCTTT 57.356 25.926 0.00 0.00 0.00 2.52
2853 5016 9.474920 TGTCGCATCATTAATTTCTTTTCTTTT 57.525 25.926 0.00 0.00 0.00 2.27
2867 5030 9.927668 TTTCTTTTCTTTTTCTCATGTGTCTTT 57.072 25.926 0.00 0.00 0.00 2.52
2868 5031 9.927668 TTCTTTTCTTTTTCTCATGTGTCTTTT 57.072 25.926 0.00 0.00 0.00 2.27
2869 5032 9.927668 TCTTTTCTTTTTCTCATGTGTCTTTTT 57.072 25.926 0.00 0.00 0.00 1.94
2892 5055 8.488651 TTTTTACGCTTTTATTGGTTTTTCCA 57.511 26.923 0.00 0.00 45.60 3.53
2958 5121 9.534565 TTTTTGAATTCACCAATGTATTCGAAA 57.465 25.926 7.89 13.66 45.20 3.46
2959 5122 8.514136 TTTGAATTCACCAATGTATTCGAAAC 57.486 30.769 7.89 2.73 42.53 2.78
2960 5123 7.208225 TGAATTCACCAATGTATTCGAAACA 57.792 32.000 3.38 8.70 42.53 2.83
2961 5124 7.081349 TGAATTCACCAATGTATTCGAAACAC 58.919 34.615 3.38 4.01 42.53 3.32
2962 5125 4.655440 TCACCAATGTATTCGAAACACG 57.345 40.909 0.00 3.85 44.09 4.49
2963 5126 3.433957 TCACCAATGTATTCGAAACACGG 59.566 43.478 18.62 18.62 42.82 4.94
2964 5127 2.745281 ACCAATGTATTCGAAACACGGG 59.255 45.455 21.33 20.27 42.82 5.28
2965 5128 3.004171 CCAATGTATTCGAAACACGGGA 58.996 45.455 0.00 0.00 42.82 5.14
2966 5129 3.437395 CCAATGTATTCGAAACACGGGAA 59.563 43.478 0.00 0.00 42.82 3.97
2967 5130 4.095782 CCAATGTATTCGAAACACGGGAAT 59.904 41.667 0.00 0.00 42.82 3.01
2968 5131 5.392595 CCAATGTATTCGAAACACGGGAATT 60.393 40.000 0.00 0.00 42.82 2.17
2969 5132 5.890424 ATGTATTCGAAACACGGGAATTT 57.110 34.783 0.00 0.00 42.82 1.82
2970 5133 5.692613 TGTATTCGAAACACGGGAATTTT 57.307 34.783 0.00 0.00 42.82 1.82
2971 5134 5.453648 TGTATTCGAAACACGGGAATTTTG 58.546 37.500 0.00 0.00 42.82 2.44
2972 5135 4.577834 ATTCGAAACACGGGAATTTTGT 57.422 36.364 0.00 0.00 42.82 2.83
2973 5136 5.692613 ATTCGAAACACGGGAATTTTGTA 57.307 34.783 0.00 0.00 42.82 2.41
2974 5137 5.496133 TTCGAAACACGGGAATTTTGTAA 57.504 34.783 0.00 0.00 42.82 2.41
2975 5138 5.496133 TCGAAACACGGGAATTTTGTAAA 57.504 34.783 0.00 0.00 42.82 2.01
2976 5139 5.512473 TCGAAACACGGGAATTTTGTAAAG 58.488 37.500 0.00 0.00 42.82 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.641577 GCGCCTACGATGACTTCTTT 58.358 50.000 0.00 0.00 43.93 2.52
8 9 2.353607 GACGAGGCGCCTACGATG 60.354 66.667 37.37 24.97 43.93 3.84
29 30 2.054021 TGTGGTTGAATGGTCAGAGGA 58.946 47.619 0.00 0.00 34.49 3.71
50 51 1.021968 GGTCAAACAGCGAACCAAGT 58.978 50.000 0.00 0.00 0.00 3.16
51 52 0.310854 GGGTCAAACAGCGAACCAAG 59.689 55.000 0.00 0.00 40.23 3.61
55 56 4.499037 AAAATAGGGTCAAACAGCGAAC 57.501 40.909 0.00 0.00 0.00 3.95
65 66 7.675195 TGTCTAGTACCACTAAAAATAGGGTCA 59.325 37.037 0.00 0.00 33.14 4.02
99 100 4.612259 CAAGCTAAACTTACTGCAGCACAG 60.612 45.833 15.27 9.74 44.41 3.66
111 112 2.061028 GCGCAATTGCAAGCTAAACTT 58.939 42.857 28.77 0.00 42.21 2.66
114 115 0.732196 CGGCGCAATTGCAAGCTAAA 60.732 50.000 28.77 0.00 42.21 1.85
322 327 9.074576 TCTTCCTTTTATCTTTTGGGTTTCTAC 57.925 33.333 0.00 0.00 0.00 2.59
336 341 9.692749 CCCTGTTTTAAGTTTCTTCCTTTTATC 57.307 33.333 0.00 0.00 0.00 1.75
351 356 0.679960 CGCCCCCTCCCTGTTTTAAG 60.680 60.000 0.00 0.00 0.00 1.85
365 370 3.846430 CTACGTTCTCCCCGCCCC 61.846 72.222 0.00 0.00 0.00 5.80
368 373 4.525949 GCCCTACGTTCTCCCCGC 62.526 72.222 0.00 0.00 0.00 6.13
369 374 4.203076 CGCCCTACGTTCTCCCCG 62.203 72.222 0.00 0.00 36.87 5.73
383 388 1.366679 GTCCTGTTAAGCTTACCGCC 58.633 55.000 5.45 0.00 40.39 6.13
385 390 2.642139 TCGTCCTGTTAAGCTTACCG 57.358 50.000 5.45 2.56 0.00 4.02
421 426 4.258543 CTCCCCTTATACGCACTGAAAAA 58.741 43.478 0.00 0.00 0.00 1.94
425 430 2.154567 ACTCCCCTTATACGCACTGA 57.845 50.000 0.00 0.00 0.00 3.41
426 431 2.981859 AACTCCCCTTATACGCACTG 57.018 50.000 0.00 0.00 0.00 3.66
438 443 2.623416 CAACTCAAGACCAAAACTCCCC 59.377 50.000 0.00 0.00 0.00 4.81
468 473 6.161705 TCCTCATCTTACCCCTCTACTAAGAA 59.838 42.308 0.00 0.00 31.80 2.52
469 474 5.675421 TCCTCATCTTACCCCTCTACTAAGA 59.325 44.000 0.00 0.00 32.41 2.10
506 511 1.948145 GCTTCATCTGCTTCTCATGGG 59.052 52.381 0.00 0.00 0.00 4.00
542 547 0.240945 GCCACCCAAATTGACTGTCG 59.759 55.000 2.98 0.00 0.00 4.35
570 575 5.529060 AGAATCTTTTTGACACTTCGCTTCT 59.471 36.000 0.00 0.00 0.00 2.85
628 2031 9.565213 GTCTTGATTGATGGAGTAAAAGAAATG 57.435 33.333 0.00 0.00 0.00 2.32
677 2085 5.186996 AGTGGTTGCTTAGACAATTTGTG 57.813 39.130 6.80 0.00 0.00 3.33
719 2128 5.535030 ACCTGCCTTAAACTTTTTCTTCGAT 59.465 36.000 0.00 0.00 0.00 3.59
722 2131 7.485810 TGTTACCTGCCTTAAACTTTTTCTTC 58.514 34.615 0.00 0.00 0.00 2.87
725 2134 7.170828 CCATTGTTACCTGCCTTAAACTTTTTC 59.829 37.037 0.00 0.00 0.00 2.29
787 2196 2.223340 GGAAACCAATGTAGATGCTGCG 60.223 50.000 0.00 0.00 0.00 5.18
806 2215 1.133363 TGAACGTTTTCCCCTCAGGA 58.867 50.000 0.46 0.00 45.68 3.86
807 2216 2.084546 GATGAACGTTTTCCCCTCAGG 58.915 52.381 0.46 0.00 0.00 3.86
808 2217 2.744202 CAGATGAACGTTTTCCCCTCAG 59.256 50.000 0.46 0.00 0.00 3.35
809 2218 2.105821 ACAGATGAACGTTTTCCCCTCA 59.894 45.455 0.46 0.00 0.00 3.86
814 2268 6.721571 TTATCTGACAGATGAACGTTTTCC 57.278 37.500 25.26 0.00 35.37 3.13
815 2269 7.994851 GTTTATCTGACAGATGAACGTTTTC 57.005 36.000 27.50 11.76 40.02 2.29
821 2275 5.645497 AGGCTTGTTTATCTGACAGATGAAC 59.355 40.000 31.51 31.51 45.78 3.18
826 2280 4.623932 ACAGGCTTGTTTATCTGACAGA 57.376 40.909 7.80 7.80 32.28 3.41
932 2400 1.563435 CGAAGGTGCTGAGTGCTGTG 61.563 60.000 0.00 0.00 43.37 3.66
934 2402 1.287730 GACGAAGGTGCTGAGTGCTG 61.288 60.000 0.00 0.00 43.37 4.41
948 2416 0.677288 ACTCAACGGATGGTGACGAA 59.323 50.000 0.00 0.00 0.00 3.85
954 2430 1.273606 CTGAGACACTCAACGGATGGT 59.726 52.381 0.00 0.00 40.18 3.55
976 2452 4.767841 AGACGCGCACGCTGAGAG 62.768 66.667 13.70 0.00 45.53 3.20
1191 2674 0.389296 CCTTCCACACGACGCACATA 60.389 55.000 0.00 0.00 0.00 2.29
1196 2679 2.654912 CGTTCCTTCCACACGACGC 61.655 63.158 0.00 0.00 35.93 5.19
1210 2693 0.379316 AAACAAGAACCGTGGCGTTC 59.621 50.000 0.00 0.00 42.08 3.95
1219 2702 1.333791 CCGTCGCAGAAAACAAGAACC 60.334 52.381 0.00 0.00 39.69 3.62
1221 2704 0.941542 CCCGTCGCAGAAAACAAGAA 59.058 50.000 0.00 0.00 39.69 2.52
1330 2815 1.580845 CTTCGCCCACTCCTGCAAAG 61.581 60.000 0.00 0.00 0.00 2.77
1331 2816 1.600636 CTTCGCCCACTCCTGCAAA 60.601 57.895 0.00 0.00 0.00 3.68
1332 2817 2.032528 CTTCGCCCACTCCTGCAA 59.967 61.111 0.00 0.00 0.00 4.08
1661 3146 1.079127 CTTGAAGGCGATCACCGGT 60.079 57.895 0.00 0.00 39.04 5.28
1839 3324 2.356667 CTCCTTGGGGCCCTTGAC 59.643 66.667 25.93 5.04 0.00 3.18
1847 3332 1.617947 CCTCGTCTTCCTCCTTGGGG 61.618 65.000 0.00 0.00 36.20 4.96
1989 3474 2.676342 GGCTCGACACGTTTTATTGGAT 59.324 45.455 0.00 0.00 0.00 3.41
1992 3477 2.093783 GGAGGCTCGACACGTTTTATTG 59.906 50.000 8.69 0.00 0.00 1.90
2067 3552 0.250295 TTGGTCTCCAAAGCTGACGG 60.250 55.000 0.00 0.00 40.92 4.79
2120 3605 2.929398 CCAACCAAACAACAAGCACTTC 59.071 45.455 0.00 0.00 0.00 3.01
2155 3640 2.294449 TCCCGATCGATCCTGATCTT 57.706 50.000 18.66 0.00 42.10 2.40
2218 3703 7.764695 TTAATTCAAGCAGCAATCAATCATG 57.235 32.000 0.00 0.00 0.00 3.07
2229 3714 6.562825 GCAAGAAACAGTTTAATTCAAGCAGC 60.563 38.462 0.00 0.00 0.00 5.25
2319 3807 5.959527 GTCACGTGCAACATCACTATATTTG 59.040 40.000 11.67 0.00 35.74 2.32
2323 3811 4.082463 TCTGTCACGTGCAACATCACTATA 60.082 41.667 11.67 0.00 35.74 1.31
2346 3834 5.782331 ACTGATGTGGCATCTACATATAGGT 59.218 40.000 10.02 0.00 38.78 3.08
2358 3846 1.068333 GCGTTTTGACTGATGTGGCAT 60.068 47.619 0.00 0.00 0.00 4.40
2396 3884 3.835790 TTCCCACGGGCAAGTTCGG 62.836 63.158 0.00 0.00 34.68 4.30
2397 3885 2.281208 TTCCCACGGGCAAGTTCG 60.281 61.111 0.00 0.00 34.68 3.95
2398 3886 1.228154 AGTTCCCACGGGCAAGTTC 60.228 57.895 0.00 0.00 34.68 3.01
2399 3887 1.528309 CAGTTCCCACGGGCAAGTT 60.528 57.895 0.00 0.00 34.68 2.66
2400 3888 1.990160 TTCAGTTCCCACGGGCAAGT 61.990 55.000 0.00 0.00 34.68 3.16
2401 3889 1.228124 TTCAGTTCCCACGGGCAAG 60.228 57.895 0.00 0.00 34.68 4.01
2402 3890 1.527380 GTTCAGTTCCCACGGGCAA 60.527 57.895 0.00 0.00 34.68 4.52
2403 3891 2.112297 GTTCAGTTCCCACGGGCA 59.888 61.111 0.00 0.00 34.68 5.36
2404 3892 2.671963 GGTTCAGTTCCCACGGGC 60.672 66.667 0.00 0.00 34.68 6.13
2444 3957 2.755542 ATCGATCGGGATCAGTGCGC 62.756 60.000 16.41 0.00 37.69 6.09
2457 3970 4.008933 CCAGGGCCGGGATCGATC 62.009 72.222 18.93 17.36 39.00 3.69
2468 3981 3.443045 CCGTGCATCAACCAGGGC 61.443 66.667 0.00 0.00 32.28 5.19
2559 4722 4.724074 ATACGACAAGTAATTCCGGACA 57.276 40.909 1.83 0.00 39.04 4.02
2573 4736 9.443323 CACCCATATTTATCCATTTATACGACA 57.557 33.333 0.00 0.00 0.00 4.35
2574 4737 9.444600 ACACCCATATTTATCCATTTATACGAC 57.555 33.333 0.00 0.00 0.00 4.34
2584 4747 9.841295 GTTTTAGTCTACACCCATATTTATCCA 57.159 33.333 0.00 0.00 0.00 3.41
2585 4748 9.841295 TGTTTTAGTCTACACCCATATTTATCC 57.159 33.333 0.00 0.00 0.00 2.59
2593 4756 9.656323 TCTAGATATGTTTTAGTCTACACCCAT 57.344 33.333 0.00 0.00 0.00 4.00
2594 4757 9.656323 ATCTAGATATGTTTTAGTCTACACCCA 57.344 33.333 2.53 0.00 0.00 4.51
2612 4775 9.692749 GTCGAAACAAATGGATGTATCTAGATA 57.307 33.333 8.44 8.44 32.02 1.98
2613 4776 8.204160 TGTCGAAACAAATGGATGTATCTAGAT 58.796 33.333 10.73 10.73 32.02 1.98
2614 4777 7.552459 TGTCGAAACAAATGGATGTATCTAGA 58.448 34.615 0.00 0.00 32.02 2.43
2615 4778 7.770801 TGTCGAAACAAATGGATGTATCTAG 57.229 36.000 0.00 0.00 32.02 2.43
2629 4792 6.926272 CCCTTTGGAATTATTTGTCGAAACAA 59.074 34.615 0.00 0.00 43.58 2.83
2630 4793 6.041069 ACCCTTTGGAATTATTTGTCGAAACA 59.959 34.615 0.00 0.00 34.81 2.83
2631 4794 6.364976 CACCCTTTGGAATTATTTGTCGAAAC 59.635 38.462 0.00 0.00 34.81 2.78
2632 4795 6.451393 CACCCTTTGGAATTATTTGTCGAAA 58.549 36.000 0.00 0.00 34.81 3.46
2633 4796 6.019779 CACCCTTTGGAATTATTTGTCGAA 57.980 37.500 0.00 0.00 34.81 3.71
2634 4797 5.637006 CACCCTTTGGAATTATTTGTCGA 57.363 39.130 0.00 0.00 34.81 4.20
2647 4810 4.079787 TGAAGATAATCTCCCACCCTTTGG 60.080 45.833 0.00 0.00 46.47 3.28
2648 4811 5.116084 TGAAGATAATCTCCCACCCTTTG 57.884 43.478 0.00 0.00 0.00 2.77
2649 4812 5.163045 GGATGAAGATAATCTCCCACCCTTT 60.163 44.000 0.00 0.00 0.00 3.11
2650 4813 4.352298 GGATGAAGATAATCTCCCACCCTT 59.648 45.833 0.00 0.00 0.00 3.95
2651 4814 3.913163 GGATGAAGATAATCTCCCACCCT 59.087 47.826 0.00 0.00 0.00 4.34
2652 4815 3.913163 AGGATGAAGATAATCTCCCACCC 59.087 47.826 0.00 0.00 0.00 4.61
2653 4816 4.322349 CGAGGATGAAGATAATCTCCCACC 60.322 50.000 0.00 0.00 0.00 4.61
2654 4817 4.282195 ACGAGGATGAAGATAATCTCCCAC 59.718 45.833 0.00 0.00 0.00 4.61
2655 4818 4.483950 ACGAGGATGAAGATAATCTCCCA 58.516 43.478 0.00 0.00 0.00 4.37
2656 4819 5.233988 CAACGAGGATGAAGATAATCTCCC 58.766 45.833 0.00 0.00 0.00 4.30
2657 4820 4.688413 GCAACGAGGATGAAGATAATCTCC 59.312 45.833 0.00 0.00 0.00 3.71
2658 4821 4.688413 GGCAACGAGGATGAAGATAATCTC 59.312 45.833 0.00 0.00 0.00 2.75
2659 4822 4.636249 GGCAACGAGGATGAAGATAATCT 58.364 43.478 0.00 0.00 0.00 2.40
2660 4823 4.999751 GGCAACGAGGATGAAGATAATC 57.000 45.455 0.00 0.00 0.00 1.75
2676 4839 2.683968 TGTGATCAGTTCTACGGCAAC 58.316 47.619 0.00 0.00 0.00 4.17
2677 4840 3.521560 GATGTGATCAGTTCTACGGCAA 58.478 45.455 0.00 0.00 0.00 4.52
2678 4841 2.479560 CGATGTGATCAGTTCTACGGCA 60.480 50.000 0.00 0.00 0.00 5.69
2679 4842 2.120232 CGATGTGATCAGTTCTACGGC 58.880 52.381 0.00 0.00 0.00 5.68
2680 4843 2.120232 GCGATGTGATCAGTTCTACGG 58.880 52.381 0.00 0.00 0.00 4.02
2681 4844 1.775770 CGCGATGTGATCAGTTCTACG 59.224 52.381 0.00 0.00 0.00 3.51
2682 4845 1.518929 GCGCGATGTGATCAGTTCTAC 59.481 52.381 12.10 0.00 0.00 2.59
2683 4846 1.134175 TGCGCGATGTGATCAGTTCTA 59.866 47.619 12.10 0.00 0.00 2.10
2684 4847 0.108662 TGCGCGATGTGATCAGTTCT 60.109 50.000 12.10 0.00 0.00 3.01
2685 4848 0.933097 ATGCGCGATGTGATCAGTTC 59.067 50.000 12.10 0.00 0.00 3.01
2686 4849 0.654160 CATGCGCGATGTGATCAGTT 59.346 50.000 12.10 0.00 0.00 3.16
2687 4850 0.179103 TCATGCGCGATGTGATCAGT 60.179 50.000 12.10 0.00 33.29 3.41
2688 4851 0.231534 GTCATGCGCGATGTGATCAG 59.768 55.000 12.10 0.00 33.29 2.90
2689 4852 1.481819 CGTCATGCGCGATGTGATCA 61.482 55.000 12.10 0.00 33.29 2.92
2690 4853 1.200103 CGTCATGCGCGATGTGATC 59.800 57.895 12.10 4.60 33.29 2.92
2691 4854 1.226945 TCGTCATGCGCGATGTGAT 60.227 52.632 12.10 0.00 41.07 3.06
2692 4855 2.158330 GTCGTCATGCGCGATGTGA 61.158 57.895 12.10 7.43 40.59 3.58
2693 4856 1.954440 TTGTCGTCATGCGCGATGTG 61.954 55.000 12.10 4.67 40.59 3.21
2694 4857 1.686566 CTTGTCGTCATGCGCGATGT 61.687 55.000 12.10 0.00 40.59 3.06
2695 4858 1.012998 CTTGTCGTCATGCGCGATG 60.013 57.895 12.10 11.34 40.59 3.84
2696 4859 2.167219 CCTTGTCGTCATGCGCGAT 61.167 57.895 12.10 0.00 40.59 4.58
2697 4860 2.809174 CCTTGTCGTCATGCGCGA 60.809 61.111 12.10 7.87 41.07 5.87
2698 4861 3.853330 CCCTTGTCGTCATGCGCG 61.853 66.667 0.00 0.00 41.07 6.86
2699 4862 2.742372 ACCCTTGTCGTCATGCGC 60.742 61.111 0.00 0.00 41.07 6.09
2700 4863 3.027170 GCACCCTTGTCGTCATGCG 62.027 63.158 3.55 3.55 43.01 4.73
2701 4864 2.690778 GGCACCCTTGTCGTCATGC 61.691 63.158 0.00 0.00 0.00 4.06
2702 4865 0.888736 TTGGCACCCTTGTCGTCATG 60.889 55.000 0.00 0.00 0.00 3.07
2703 4866 0.889186 GTTGGCACCCTTGTCGTCAT 60.889 55.000 0.00 0.00 0.00 3.06
2704 4867 1.525077 GTTGGCACCCTTGTCGTCA 60.525 57.895 0.00 0.00 0.00 4.35
2705 4868 1.227853 AGTTGGCACCCTTGTCGTC 60.228 57.895 0.00 0.00 0.00 4.20
2706 4869 1.525995 CAGTTGGCACCCTTGTCGT 60.526 57.895 0.00 0.00 0.00 4.34
2707 4870 2.908073 GCAGTTGGCACCCTTGTCG 61.908 63.158 0.00 0.00 43.97 4.35
2708 4871 3.042560 GCAGTTGGCACCCTTGTC 58.957 61.111 0.00 0.00 43.97 3.18
2717 4880 2.391389 GGACGCTAGTGCAGTTGGC 61.391 63.158 0.00 4.20 45.13 4.52
2718 4881 0.530744 TAGGACGCTAGTGCAGTTGG 59.469 55.000 0.00 0.00 41.52 3.77
2719 4882 2.586258 ATAGGACGCTAGTGCAGTTG 57.414 50.000 0.00 0.00 41.52 3.16
2720 4883 2.496070 TGAATAGGACGCTAGTGCAGTT 59.504 45.455 0.00 0.00 41.52 3.16
2721 4884 2.100197 TGAATAGGACGCTAGTGCAGT 58.900 47.619 2.40 0.00 41.52 4.40
2722 4885 2.860735 GTTGAATAGGACGCTAGTGCAG 59.139 50.000 2.40 0.00 41.52 4.41
2723 4886 2.496070 AGTTGAATAGGACGCTAGTGCA 59.504 45.455 2.40 0.00 41.52 4.57
2724 4887 3.117046 GAGTTGAATAGGACGCTAGTGC 58.883 50.000 2.40 0.00 39.15 4.40
2725 4888 3.364062 CGAGTTGAATAGGACGCTAGTG 58.636 50.000 0.59 0.59 0.00 2.74
2726 4889 2.223525 GCGAGTTGAATAGGACGCTAGT 60.224 50.000 0.00 0.00 42.19 2.57
2727 4890 2.386249 GCGAGTTGAATAGGACGCTAG 58.614 52.381 0.00 0.00 42.19 3.42
2728 4891 1.066605 GGCGAGTTGAATAGGACGCTA 59.933 52.381 0.00 0.00 44.31 4.26
2729 4892 0.179108 GGCGAGTTGAATAGGACGCT 60.179 55.000 0.00 0.00 44.31 5.07
2730 4893 0.459585 TGGCGAGTTGAATAGGACGC 60.460 55.000 0.00 0.00 44.18 5.19
2731 4894 1.860950 CATGGCGAGTTGAATAGGACG 59.139 52.381 0.00 0.00 0.00 4.79
2732 4895 2.158957 TCCATGGCGAGTTGAATAGGAC 60.159 50.000 6.96 0.00 0.00 3.85
2733 4896 2.115427 TCCATGGCGAGTTGAATAGGA 58.885 47.619 6.96 0.00 0.00 2.94
2734 4897 2.213499 GTCCATGGCGAGTTGAATAGG 58.787 52.381 6.96 0.00 0.00 2.57
2735 4898 2.609459 GTGTCCATGGCGAGTTGAATAG 59.391 50.000 6.96 0.00 0.00 1.73
2736 4899 2.627945 GTGTCCATGGCGAGTTGAATA 58.372 47.619 6.96 0.00 0.00 1.75
2737 4900 1.453155 GTGTCCATGGCGAGTTGAAT 58.547 50.000 6.96 0.00 0.00 2.57
2738 4901 0.605319 GGTGTCCATGGCGAGTTGAA 60.605 55.000 6.96 0.00 0.00 2.69
2739 4902 1.003839 GGTGTCCATGGCGAGTTGA 60.004 57.895 6.96 0.00 0.00 3.18
2740 4903 2.040544 GGGTGTCCATGGCGAGTTG 61.041 63.158 6.96 0.00 0.00 3.16
2741 4904 2.351276 GGGTGTCCATGGCGAGTT 59.649 61.111 6.96 0.00 0.00 3.01
2742 4905 2.927856 TGGGTGTCCATGGCGAGT 60.928 61.111 6.96 0.00 38.32 4.18
2743 4906 2.436646 GTGGGTGTCCATGGCGAG 60.437 66.667 6.96 0.00 46.09 5.03
2744 4907 3.245346 TGTGGGTGTCCATGGCGA 61.245 61.111 6.96 0.00 46.09 5.54
2745 4908 3.055719 GTGTGGGTGTCCATGGCG 61.056 66.667 6.96 0.00 46.09 5.69
2746 4909 1.304381 ATGTGTGGGTGTCCATGGC 60.304 57.895 6.96 2.72 46.09 4.40
2747 4910 0.038021 TGATGTGTGGGTGTCCATGG 59.962 55.000 4.97 4.97 46.09 3.66
2748 4911 1.456296 CTGATGTGTGGGTGTCCATG 58.544 55.000 0.00 0.00 46.09 3.66
2749 4912 0.322816 GCTGATGTGTGGGTGTCCAT 60.323 55.000 0.00 0.00 46.09 3.41
2750 4913 1.073025 GCTGATGTGTGGGTGTCCA 59.927 57.895 0.00 0.00 41.58 4.02
2751 4914 0.250901 AAGCTGATGTGTGGGTGTCC 60.251 55.000 0.00 0.00 0.00 4.02
2752 4915 0.877071 CAAGCTGATGTGTGGGTGTC 59.123 55.000 0.00 0.00 0.00 3.67
2753 4916 0.538057 CCAAGCTGATGTGTGGGTGT 60.538 55.000 0.00 0.00 0.00 4.16
2754 4917 1.870055 GCCAAGCTGATGTGTGGGTG 61.870 60.000 2.16 0.00 0.00 4.61
2755 4918 1.604593 GCCAAGCTGATGTGTGGGT 60.605 57.895 2.16 0.00 0.00 4.51
2756 4919 2.345760 GGCCAAGCTGATGTGTGGG 61.346 63.158 0.00 0.00 0.00 4.61
2757 4920 0.896940 AAGGCCAAGCTGATGTGTGG 60.897 55.000 5.01 0.00 0.00 4.17
2758 4921 0.963962 AAAGGCCAAGCTGATGTGTG 59.036 50.000 5.01 0.00 0.00 3.82
2759 4922 0.963962 CAAAGGCCAAGCTGATGTGT 59.036 50.000 5.01 0.00 0.00 3.72
2760 4923 1.201647 CTCAAAGGCCAAGCTGATGTG 59.798 52.381 5.01 0.00 0.00 3.21
2761 4924 1.542492 CTCAAAGGCCAAGCTGATGT 58.458 50.000 5.01 0.00 0.00 3.06
2762 4925 0.172803 GCTCAAAGGCCAAGCTGATG 59.827 55.000 5.01 0.00 33.23 3.07
2763 4926 0.039326 AGCTCAAAGGCCAAGCTGAT 59.961 50.000 17.81 0.00 44.41 2.90
2764 4927 0.178981 AAGCTCAAAGGCCAAGCTGA 60.179 50.000 18.84 8.79 45.33 4.26
2765 4928 0.038526 CAAGCTCAAAGGCCAAGCTG 60.039 55.000 18.84 11.36 45.33 4.24
2767 4930 1.291272 CCAAGCTCAAAGGCCAAGC 59.709 57.895 5.01 8.51 36.27 4.01
2768 4931 1.291272 GCCAAGCTCAAAGGCCAAG 59.709 57.895 5.01 0.00 42.58 3.61
2769 4932 3.458653 GCCAAGCTCAAAGGCCAA 58.541 55.556 5.01 0.00 42.58 4.52
2773 4936 0.886563 CCTCAAGCCAAGCTCAAAGG 59.113 55.000 0.00 0.00 38.25 3.11
2774 4937 1.901591 TCCTCAAGCCAAGCTCAAAG 58.098 50.000 0.00 0.00 38.25 2.77
2775 4938 2.363306 TTCCTCAAGCCAAGCTCAAA 57.637 45.000 0.00 0.00 38.25 2.69
2776 4939 2.592102 ATTCCTCAAGCCAAGCTCAA 57.408 45.000 0.00 0.00 38.25 3.02
2777 4940 2.840038 TCTATTCCTCAAGCCAAGCTCA 59.160 45.455 0.00 0.00 38.25 4.26
2778 4941 3.202097 GTCTATTCCTCAAGCCAAGCTC 58.798 50.000 0.00 0.00 38.25 4.09
2779 4942 2.419297 CGTCTATTCCTCAAGCCAAGCT 60.419 50.000 0.00 0.00 42.56 3.74
2780 4943 1.936547 CGTCTATTCCTCAAGCCAAGC 59.063 52.381 0.00 0.00 0.00 4.01
2781 4944 2.555199 CCGTCTATTCCTCAAGCCAAG 58.445 52.381 0.00 0.00 0.00 3.61
2782 4945 1.209504 CCCGTCTATTCCTCAAGCCAA 59.790 52.381 0.00 0.00 0.00 4.52
2783 4946 0.830648 CCCGTCTATTCCTCAAGCCA 59.169 55.000 0.00 0.00 0.00 4.75
2784 4947 0.533085 GCCCGTCTATTCCTCAAGCC 60.533 60.000 0.00 0.00 0.00 4.35
2785 4948 0.876342 CGCCCGTCTATTCCTCAAGC 60.876 60.000 0.00 0.00 0.00 4.01
2786 4949 0.876342 GCGCCCGTCTATTCCTCAAG 60.876 60.000 0.00 0.00 0.00 3.02
2787 4950 1.143183 GCGCCCGTCTATTCCTCAA 59.857 57.895 0.00 0.00 0.00 3.02
2788 4951 2.055633 TGCGCCCGTCTATTCCTCA 61.056 57.895 4.18 0.00 0.00 3.86
2789 4952 1.591863 GTGCGCCCGTCTATTCCTC 60.592 63.158 4.18 0.00 0.00 3.71
2790 4953 2.355986 TGTGCGCCCGTCTATTCCT 61.356 57.895 4.18 0.00 0.00 3.36
2791 4954 2.171725 GTGTGCGCCCGTCTATTCC 61.172 63.158 4.18 0.00 0.00 3.01
2792 4955 2.171725 GGTGTGCGCCCGTCTATTC 61.172 63.158 4.18 0.00 0.00 1.75
2793 4956 2.125269 GGTGTGCGCCCGTCTATT 60.125 61.111 4.18 0.00 0.00 1.73
2794 4957 4.157120 GGGTGTGCGCCCGTCTAT 62.157 66.667 4.18 0.00 39.17 1.98
2802 4965 4.323477 TAGTGGTGGGGTGTGCGC 62.323 66.667 0.00 0.00 0.00 6.09
2803 4966 2.358247 GTAGTGGTGGGGTGTGCG 60.358 66.667 0.00 0.00 0.00 5.34
2804 4967 2.033602 GGTAGTGGTGGGGTGTGC 59.966 66.667 0.00 0.00 0.00 4.57
2805 4968 1.072505 GTGGTAGTGGTGGGGTGTG 59.927 63.158 0.00 0.00 0.00 3.82
2806 4969 2.513259 CGTGGTAGTGGTGGGGTGT 61.513 63.158 0.00 0.00 0.00 4.16
2807 4970 1.186917 TACGTGGTAGTGGTGGGGTG 61.187 60.000 0.00 0.00 0.00 4.61
2808 4971 0.252375 ATACGTGGTAGTGGTGGGGT 60.252 55.000 0.00 0.00 0.00 4.95
2809 4972 0.177141 CATACGTGGTAGTGGTGGGG 59.823 60.000 0.00 0.00 0.00 4.96
2810 4973 0.899720 ACATACGTGGTAGTGGTGGG 59.100 55.000 0.00 0.00 0.00 4.61
2811 4974 1.468565 CGACATACGTGGTAGTGGTGG 60.469 57.143 0.00 0.00 37.22 4.61
2812 4975 1.904144 CGACATACGTGGTAGTGGTG 58.096 55.000 0.00 0.00 37.22 4.17
2813 4976 0.171903 GCGACATACGTGGTAGTGGT 59.828 55.000 0.00 0.00 44.60 4.16
2814 4977 0.171679 TGCGACATACGTGGTAGTGG 59.828 55.000 0.00 0.00 44.60 4.00
2815 4978 2.117137 GATGCGACATACGTGGTAGTG 58.883 52.381 0.00 0.00 44.60 2.74
2816 4979 1.746787 TGATGCGACATACGTGGTAGT 59.253 47.619 0.00 0.00 44.60 2.73
2817 4980 2.485266 TGATGCGACATACGTGGTAG 57.515 50.000 0.00 0.00 44.60 3.18
2818 4981 3.446310 AATGATGCGACATACGTGGTA 57.554 42.857 0.00 0.00 44.60 3.25
2819 4982 2.309528 AATGATGCGACATACGTGGT 57.690 45.000 0.00 0.00 44.60 4.16
2820 4983 4.990543 ATTAATGATGCGACATACGTGG 57.009 40.909 0.00 0.00 44.60 4.94
2821 4984 6.649436 AGAAATTAATGATGCGACATACGTG 58.351 36.000 0.00 0.00 44.60 4.49
2822 4985 6.844696 AGAAATTAATGATGCGACATACGT 57.155 33.333 0.00 0.00 44.60 3.57
2823 4986 8.547091 AAAAGAAATTAATGATGCGACATACG 57.453 30.769 0.00 0.00 45.66 3.06
2824 4987 9.722056 AGAAAAGAAATTAATGATGCGACATAC 57.278 29.630 0.00 0.00 0.00 2.39
2826 4989 9.643693 AAAGAAAAGAAATTAATGATGCGACAT 57.356 25.926 0.00 0.00 0.00 3.06
2827 4990 9.474920 AAAAGAAAAGAAATTAATGATGCGACA 57.525 25.926 0.00 0.00 0.00 4.35
2841 5004 9.927668 AAAGACACATGAGAAAAAGAAAAGAAA 57.072 25.926 0.00 0.00 0.00 2.52
2842 5005 9.927668 AAAAGACACATGAGAAAAAGAAAAGAA 57.072 25.926 0.00 0.00 0.00 2.52
2843 5006 9.927668 AAAAAGACACATGAGAAAAAGAAAAGA 57.072 25.926 0.00 0.00 0.00 2.52
2867 5030 8.488651 TGGAAAAACCAATAAAAGCGTAAAAA 57.511 26.923 0.00 0.00 46.75 1.94
2932 5095 9.534565 TTTCGAATACATTGGTGAATTCAAAAA 57.465 25.926 10.35 8.06 0.00 1.94
2933 5096 8.973378 GTTTCGAATACATTGGTGAATTCAAAA 58.027 29.630 10.35 8.44 0.00 2.44
2934 5097 8.138074 TGTTTCGAATACATTGGTGAATTCAAA 58.862 29.630 10.35 2.03 0.00 2.69
2935 5098 7.593273 GTGTTTCGAATACATTGGTGAATTCAA 59.407 33.333 10.35 0.00 0.00 2.69
2936 5099 7.081349 GTGTTTCGAATACATTGGTGAATTCA 58.919 34.615 3.38 3.38 0.00 2.57
2937 5100 6.248420 CGTGTTTCGAATACATTGGTGAATTC 59.752 38.462 13.63 0.00 42.86 2.17
2938 5101 6.083630 CGTGTTTCGAATACATTGGTGAATT 58.916 36.000 13.63 0.00 42.86 2.17
2939 5102 5.391523 CCGTGTTTCGAATACATTGGTGAAT 60.392 40.000 13.63 0.00 42.86 2.57
2940 5103 4.083749 CCGTGTTTCGAATACATTGGTGAA 60.084 41.667 13.63 0.00 42.86 3.18
2941 5104 3.433957 CCGTGTTTCGAATACATTGGTGA 59.566 43.478 13.63 0.00 42.86 4.02
2942 5105 3.425625 CCCGTGTTTCGAATACATTGGTG 60.426 47.826 20.09 13.78 42.86 4.17
2943 5106 2.745281 CCCGTGTTTCGAATACATTGGT 59.255 45.455 20.09 0.00 42.86 3.67
2944 5107 3.004171 TCCCGTGTTTCGAATACATTGG 58.996 45.455 13.63 15.94 42.86 3.16
2945 5108 4.671880 TTCCCGTGTTTCGAATACATTG 57.328 40.909 13.63 10.40 42.86 2.82
2946 5109 5.890424 AATTCCCGTGTTTCGAATACATT 57.110 34.783 13.63 4.44 42.86 2.71
2947 5110 5.890424 AAATTCCCGTGTTTCGAATACAT 57.110 34.783 13.63 0.00 42.86 2.29
2948 5111 5.008811 ACAAAATTCCCGTGTTTCGAATACA 59.991 36.000 0.00 3.88 42.86 2.29
2949 5112 5.454520 ACAAAATTCCCGTGTTTCGAATAC 58.545 37.500 0.00 0.55 42.86 1.89
2950 5113 5.692613 ACAAAATTCCCGTGTTTCGAATA 57.307 34.783 0.00 0.00 42.86 1.75
2951 5114 4.577834 ACAAAATTCCCGTGTTTCGAAT 57.422 36.364 0.00 0.00 42.86 3.34
2952 5115 5.496133 TTACAAAATTCCCGTGTTTCGAA 57.504 34.783 0.00 0.00 42.86 3.71
2953 5116 5.496133 TTTACAAAATTCCCGTGTTTCGA 57.504 34.783 0.00 0.00 42.86 3.71
2954 5117 5.799542 CTTTACAAAATTCCCGTGTTTCG 57.200 39.130 0.00 0.00 39.52 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.