Multiple sequence alignment - TraesCS3A01G281200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G281200 chr3A 100.000 8881 0 0 1 8881 510006003 509997123 0.000000e+00 16401.0
1 TraesCS3A01G281200 chr3A 82.095 592 68 19 5470 6036 259332020 259332598 1.040000e-128 472.0
2 TraesCS3A01G281200 chr3A 78.049 451 68 12 5472 5892 720453769 720453320 1.140000e-63 255.0
3 TraesCS3A01G281200 chr3A 93.750 160 10 0 5472 5631 510000122 509999963 3.200000e-59 241.0
4 TraesCS3A01G281200 chr3A 100.000 29 0 0 4386 4414 510000755 510000783 4.000000e-03 54.7
5 TraesCS3A01G281200 chr3D 93.300 3627 150 33 857 4450 389084643 389081077 0.000000e+00 5265.0
6 TraesCS3A01G281200 chr3D 90.904 1957 100 34 6820 8728 389077100 389075174 0.000000e+00 2556.0
7 TraesCS3A01G281200 chr3D 94.875 761 32 5 6048 6805 389077837 389077081 0.000000e+00 1182.0
8 TraesCS3A01G281200 chr3D 95.522 402 17 1 4446 4846 389078619 389078218 7.520000e-180 641.0
9 TraesCS3A01G281200 chr3D 84.158 606 65 16 5473 6048 374891322 374890718 7.790000e-155 558.0
10 TraesCS3A01G281200 chr3D 84.082 534 67 13 16 531 389086536 389086003 4.790000e-137 499.0
11 TraesCS3A01G281200 chr3D 80.424 613 72 25 5479 6047 206787460 206786852 2.960000e-114 424.0
12 TraesCS3A01G281200 chr3D 85.211 426 39 4 609 1033 389085901 389085499 4.960000e-112 416.0
13 TraesCS3A01G281200 chr3D 79.901 607 74 26 5473 6036 205083825 205083224 1.390000e-107 401.0
14 TraesCS3A01G281200 chr3D 98.230 226 2 2 5177 5401 389078223 389077999 2.320000e-105 394.0
15 TraesCS3A01G281200 chr3D 86.122 245 20 7 5472 5703 374938667 374938424 1.480000e-62 252.0
16 TraesCS3A01G281200 chr3D 90.845 142 6 3 8740 8881 389074796 389074662 5.480000e-42 183.0
17 TraesCS3A01G281200 chr3D 88.000 75 7 2 3650 3723 23667617 23667544 4.420000e-13 87.9
18 TraesCS3A01G281200 chr3D 100.000 29 0 0 4386 4414 389078151 389078179 4.000000e-03 54.7
19 TraesCS3A01G281200 chr3B 90.138 2180 120 43 856 2982 506631781 506629644 0.000000e+00 2747.0
20 TraesCS3A01G281200 chr3B 89.991 1089 59 26 7642 8728 506624472 506623432 0.000000e+00 1362.0
21 TraesCS3A01G281200 chr3B 87.810 1050 102 12 3722 4762 506628997 506627965 0.000000e+00 1206.0
22 TraesCS3A01G281200 chr3B 83.608 1092 111 41 6606 7658 506625567 506624505 0.000000e+00 963.0
23 TraesCS3A01G281200 chr3B 90.476 651 49 4 3011 3659 506629647 506629008 0.000000e+00 846.0
24 TraesCS3A01G281200 chr3B 88.498 626 45 8 7 606 506730179 506729555 0.000000e+00 732.0
25 TraesCS3A01G281200 chr3B 91.445 339 26 3 4840 5176 338615578 338615915 6.280000e-126 462.0
26 TraesCS3A01G281200 chr3B 92.145 331 18 6 4846 5172 338611717 338612043 2.260000e-125 460.0
27 TraesCS3A01G281200 chr3B 92.857 266 18 1 1 265 506730634 506730369 1.400000e-102 385.0
28 TraesCS3A01G281200 chr3B 86.293 321 23 12 6248 6552 506625891 506625576 6.650000e-86 329.0
29 TraesCS3A01G281200 chr3B 90.830 229 19 2 6048 6276 506626123 506625897 1.120000e-78 305.0
30 TraesCS3A01G281200 chr3B 90.909 121 3 2 8737 8849 506621369 506621249 1.190000e-33 156.0
31 TraesCS3A01G281200 chr2B 86.949 590 46 17 5475 6034 606148551 606147963 1.260000e-177 634.0
32 TraesCS3A01G281200 chr2B 92.424 66 5 0 3658 3723 514395873 514395808 2.640000e-15 95.3
33 TraesCS3A01G281200 chr1B 85.492 579 68 5 5472 6036 243475152 243475728 2.760000e-164 590.0
34 TraesCS3A01G281200 chr1B 82.119 151 22 4 5643 5789 626916473 626916324 3.370000e-24 124.0
35 TraesCS3A01G281200 chr1B 92.424 66 5 0 3658 3723 589055410 589055475 2.640000e-15 95.3
36 TraesCS3A01G281200 chr1B 88.732 71 7 1 3653 3723 99134561 99134492 1.590000e-12 86.1
37 TraesCS3A01G281200 chr7B 84.950 598 60 14 5473 6041 220876080 220875484 5.980000e-161 579.0
38 TraesCS3A01G281200 chr7B 92.754 69 3 2 3656 3723 44556428 44556361 2.040000e-16 99.0
39 TraesCS3A01G281200 chr7B 90.411 73 7 0 3651 3723 633676723 633676795 7.340000e-16 97.1
40 TraesCS3A01G281200 chr7B 91.176 68 4 2 3657 3723 513654311 513654245 3.410000e-14 91.6
41 TraesCS3A01G281200 chr7D 84.539 608 61 18 5471 6048 499243292 499242688 1.000000e-158 571.0
42 TraesCS3A01G281200 chr7D 96.364 55 1 1 3669 3723 267124152 267124099 1.230000e-13 89.8
43 TraesCS3A01G281200 chr7D 88.406 69 4 4 3657 3723 197300246 197300180 7.390000e-11 80.5
44 TraesCS3A01G281200 chr7D 88.060 67 8 0 3657 3723 267124057 267124123 7.390000e-11 80.5
45 TraesCS3A01G281200 chr6B 84.272 604 59 16 5472 6041 389235655 389236256 2.800000e-154 556.0
46 TraesCS3A01G281200 chr6B 87.903 248 17 3 5472 5706 389236097 389236344 6.790000e-71 279.0
47 TraesCS3A01G281200 chr6A 85.988 521 69 3 5472 5989 457084963 457084444 1.010000e-153 555.0
48 TraesCS3A01G281200 chr6A 91.843 331 25 2 4848 5177 19606092 19606421 2.260000e-125 460.0
49 TraesCS3A01G281200 chr6A 90.964 332 28 2 4846 5176 19601737 19602067 6.330000e-121 446.0
50 TraesCS3A01G281200 chr5B 83.474 593 58 8 5473 6036 224346824 224346243 4.750000e-142 516.0
51 TraesCS3A01G281200 chr5B 92.424 66 5 0 3658 3723 338943240 338943175 2.640000e-15 95.3
52 TraesCS3A01G281200 chr5B 89.855 69 7 0 3658 3726 245831394 245831326 1.230000e-13 89.8
53 TraesCS3A01G281200 chr2D 92.920 339 21 3 4840 5176 194447907 194448244 2.880000e-134 490.0
54 TraesCS3A01G281200 chr2D 91.566 332 26 2 4846 5176 369478651 369478321 2.920000e-124 457.0
55 TraesCS3A01G281200 chr2D 85.782 422 43 5 5643 6048 158225857 158225437 1.770000e-116 431.0
56 TraesCS3A01G281200 chr2D 86.842 342 25 8 5473 5796 378038224 378038563 1.820000e-96 364.0
57 TraesCS3A01G281200 chr4D 92.836 335 19 4 4846 5176 170661195 170660862 1.730000e-131 481.0
58 TraesCS3A01G281200 chr4D 91.740 339 24 4 4840 5176 170655977 170655641 1.350000e-127 468.0
59 TraesCS3A01G281200 chr4D 90.278 72 4 3 3654 3723 18693428 18693498 3.410000e-14 91.6
60 TraesCS3A01G281200 chr4D 95.745 47 2 0 3658 3704 503617024 503617070 9.560000e-10 76.8
61 TraesCS3A01G281200 chr4D 86.765 68 6 3 3658 3723 509105454 509105388 1.240000e-08 73.1
62 TraesCS3A01G281200 chr4D 85.075 67 8 2 3658 3723 64546728 64546793 5.750000e-07 67.6
63 TraesCS3A01G281200 chr2A 91.291 333 22 5 4846 5177 251739193 251739519 1.760000e-121 448.0
64 TraesCS3A01G281200 chr5A 81.391 489 62 10 5475 5936 458206811 458206325 1.090000e-98 372.0
65 TraesCS3A01G281200 chr5A 89.333 75 7 1 3650 3723 407937826 407937752 9.490000e-15 93.5
66 TraesCS3A01G281200 chr5D 83.375 403 38 9 5473 5846 381166248 381166650 6.600000e-91 346.0
67 TraesCS3A01G281200 chr5D 86.486 222 19 4 5472 5682 176098182 176098403 5.360000e-57 233.0
68 TraesCS3A01G281200 chr5D 87.500 64 5 3 3647 3709 337036161 337036222 4.450000e-08 71.3
69 TraesCS3A01G281200 chr7A 84.305 223 28 4 5472 5693 718077293 718077077 2.510000e-50 211.0
70 TraesCS3A01G281200 chr7A 92.537 67 5 0 3657 3723 663949667 663949601 7.340000e-16 97.1
71 TraesCS3A01G281200 chr4A 92.424 66 5 0 3658 3723 657141820 657141755 2.640000e-15 95.3
72 TraesCS3A01G281200 chr4B 93.443 61 4 0 3663 3723 583994495 583994555 3.410000e-14 91.6
73 TraesCS3A01G281200 chr4B 90.141 71 6 1 3654 3723 621511692 621511622 3.410000e-14 91.6
74 TraesCS3A01G281200 chr4B 89.394 66 7 0 3658 3723 642728015 642727950 5.710000e-12 84.2
75 TraesCS3A01G281200 chr4B 87.879 66 8 0 3658 3723 583994596 583994531 2.660000e-10 78.7
76 TraesCS3A01G281200 chr1D 90.141 71 4 3 3655 3723 128528612 128528681 1.230000e-13 89.8
77 TraesCS3A01G281200 chr1D 87.879 66 8 0 3658 3723 63635437 63635372 2.660000e-10 78.7
78 TraesCS3A01G281200 chr1D 95.745 47 2 0 3668 3714 379139907 379139953 9.560000e-10 76.8
79 TraesCS3A01G281200 chr1D 84.286 70 9 2 3655 3723 24714571 24714503 5.750000e-07 67.6
80 TraesCS3A01G281200 chr1D 85.075 67 8 2 3658 3723 407673117 407673052 5.750000e-07 67.6
81 TraesCS3A01G281200 chr6D 94.000 50 3 0 3658 3707 110656699 110656650 9.560000e-10 76.8
82 TraesCS3A01G281200 chr6D 83.333 78 13 0 3646 3723 136707368 136707445 1.240000e-08 73.1
83 TraesCS3A01G281200 chr6D 90.566 53 5 0 3655 3707 10477858 10477910 4.450000e-08 71.3
84 TraesCS3A01G281200 chr6D 90.566 53 5 0 3657 3709 112982737 112982789 4.450000e-08 71.3
85 TraesCS3A01G281200 chr6D 95.455 44 2 0 3666 3709 131894142 131894099 4.450000e-08 71.3
86 TraesCS3A01G281200 chr6D 90.741 54 3 2 3657 3709 175007638 175007690 4.450000e-08 71.3
87 TraesCS3A01G281200 chr6D 90.566 53 5 0 3657 3709 290649842 290649790 4.450000e-08 71.3
88 TraesCS3A01G281200 chr6D 93.478 46 2 1 3656 3700 406626753 406626798 5.750000e-07 67.6
89 TraesCS3A01G281200 chr6D 100.000 35 0 0 3675 3709 71971870 71971836 2.070000e-06 65.8
90 TraesCS3A01G281200 chrUn 92.000 50 2 2 3675 3723 269322158 269322110 1.600000e-07 69.4
91 TraesCS3A01G281200 chrUn 95.238 42 2 0 3668 3709 10814690 10814649 5.750000e-07 67.6
92 TraesCS3A01G281200 chrUn 100.000 35 0 0 3675 3709 5249473 5249439 2.070000e-06 65.8
93 TraesCS3A01G281200 chrUn 100.000 35 0 0 3675 3709 95165156 95165122 2.070000e-06 65.8
94 TraesCS3A01G281200 chrUn 100.000 35 0 0 3675 3709 173549630 173549664 2.070000e-06 65.8
95 TraesCS3A01G281200 chrUn 93.023 43 3 0 3657 3699 916169 916127 7.440000e-06 63.9
96 TraesCS3A01G281200 chrUn 92.857 42 3 0 3668 3709 106089572 106089613 2.680000e-05 62.1
97 TraesCS3A01G281200 chrUn 97.143 35 1 0 3675 3709 20148405 20148439 9.630000e-05 60.2
98 TraesCS3A01G281200 chrUn 89.362 47 5 0 3658 3704 52409746 52409792 9.630000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G281200 chr3A 509997123 510006003 8880 True 16401.00 16401 100.000000 1 8881 1 chr3A.!!$R1 8880
1 TraesCS3A01G281200 chr3A 259332020 259332598 578 False 472.00 472 82.095000 5470 6036 1 chr3A.!!$F1 566
2 TraesCS3A01G281200 chr3D 389074662 389086536 11874 True 1392.00 5265 91.621125 16 8881 8 chr3D.!!$R6 8865
3 TraesCS3A01G281200 chr3D 374890718 374891322 604 True 558.00 558 84.158000 5473 6048 1 chr3D.!!$R4 575
4 TraesCS3A01G281200 chr3D 206786852 206787460 608 True 424.00 424 80.424000 5479 6047 1 chr3D.!!$R3 568
5 TraesCS3A01G281200 chr3D 205083224 205083825 601 True 401.00 401 79.901000 5473 6036 1 chr3D.!!$R2 563
6 TraesCS3A01G281200 chr3B 506621249 506631781 10532 True 989.25 2747 88.756875 856 8849 8 chr3B.!!$R1 7993
7 TraesCS3A01G281200 chr3B 506729555 506730634 1079 True 558.50 732 90.677500 1 606 2 chr3B.!!$R2 605
8 TraesCS3A01G281200 chr3B 338611717 338615915 4198 False 461.00 462 91.795000 4840 5176 2 chr3B.!!$F1 336
9 TraesCS3A01G281200 chr2B 606147963 606148551 588 True 634.00 634 86.949000 5475 6034 1 chr2B.!!$R2 559
10 TraesCS3A01G281200 chr1B 243475152 243475728 576 False 590.00 590 85.492000 5472 6036 1 chr1B.!!$F1 564
11 TraesCS3A01G281200 chr7B 220875484 220876080 596 True 579.00 579 84.950000 5473 6041 1 chr7B.!!$R2 568
12 TraesCS3A01G281200 chr7D 499242688 499243292 604 True 571.00 571 84.539000 5471 6048 1 chr7D.!!$R3 577
13 TraesCS3A01G281200 chr6B 389235655 389236344 689 False 417.50 556 86.087500 5472 6041 2 chr6B.!!$F1 569
14 TraesCS3A01G281200 chr6A 457084444 457084963 519 True 555.00 555 85.988000 5472 5989 1 chr6A.!!$R1 517
15 TraesCS3A01G281200 chr5B 224346243 224346824 581 True 516.00 516 83.474000 5473 6036 1 chr5B.!!$R1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 997 0.250124 TTCCCGATCACAAGCGTTGT 60.250 50.000 0.00 0.0 46.75 3.32 F
727 1244 0.331278 CATTAACTGCCCTGGACCCA 59.669 55.000 0.00 0.0 0.00 4.51 F
1669 3227 0.246635 ACGATGGCTTTGCGAGTACT 59.753 50.000 0.00 0.0 0.00 2.73 F
2047 3644 0.394565 GAGCTTATCTGTCGGCCCAT 59.605 55.000 0.00 0.0 0.00 4.00 F
2263 3869 2.429610 TCCTTGGCCTCTTACACGATAC 59.570 50.000 3.32 0.0 0.00 2.24 F
2715 4328 2.990066 ATCGGCCCTCTTTGAGTTAG 57.010 50.000 0.00 0.0 0.00 2.34 F
4212 5845 1.459592 GCAAGTAGCATCGTTCACGTT 59.540 47.619 0.00 0.0 44.79 3.99 F
4722 8820 0.602106 CTATGGCCTCCAGCACATCG 60.602 60.000 3.32 0.0 46.50 3.84 F
5153 14520 0.251922 ACAACCTACGCCCTAGACCA 60.252 55.000 0.00 0.0 0.00 4.02 F
5989 15470 0.313987 AAAGTTAAGCGTGCTTGGCC 59.686 50.000 16.98 0.0 37.47 5.36 F
7086 16619 0.033208 TCCTGCCCATTCCACATTCC 60.033 55.000 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 3208 0.246635 AGTACTCGCAAAGCCATCGT 59.753 50.000 0.00 0.00 0.00 3.73 R
1672 3230 0.603975 GCCCGCTTCCACCATATCTC 60.604 60.000 0.00 0.00 0.00 2.75 R
2715 4328 1.059913 ATAGGCATCCAGTAGGGCAC 58.940 55.000 0.00 0.00 36.80 5.01 R
3967 5591 2.287644 TGAATAAACCATCGAGCATGCG 59.712 45.455 13.01 0.00 0.00 4.73 R
4212 5845 9.958180 CTATCTATCTGAACTCTCTAATCCTCA 57.042 37.037 0.00 0.00 0.00 3.86 R
4337 5973 0.108615 CCACATGACAGAGGACGTCC 60.109 60.000 27.67 27.67 32.15 4.79 R
5016 14382 0.688749 TAGGGTTTAGGGTCCGGCTC 60.689 60.000 0.00 0.00 0.00 4.70 R
6054 15536 0.942962 GATGGCATGTGCTCTGCTAC 59.057 55.000 3.81 0.00 41.70 3.58 R
6829 16361 0.538977 AGTGGCAGCAGCATTCAACT 60.539 50.000 2.65 0.00 44.61 3.16 R
7673 17297 0.111089 CGCACTTTGTGAAGACGAGC 60.111 55.000 1.52 0.00 37.82 5.03 R
8048 17697 0.107654 AGCGGCTTGTCTGTATTCCC 60.108 55.000 0.00 0.00 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 551 8.375506 AGATAGATGTTTTTGACTCTTACACCA 58.624 33.333 0.00 0.00 0.00 4.17
156 607 5.092554 TCCGGCACTATTCTTTCAATGTA 57.907 39.130 0.00 0.00 0.00 2.29
157 608 4.873827 TCCGGCACTATTCTTTCAATGTAC 59.126 41.667 0.00 0.00 0.00 2.90
179 630 1.481240 CGTGCTCGTCCACTATGATG 58.519 55.000 0.00 0.00 33.60 3.07
180 631 1.202302 CGTGCTCGTCCACTATGATGT 60.202 52.381 0.00 0.00 33.60 3.06
211 662 5.056480 ACAACTTTGTCGATGTCAAGATCA 58.944 37.500 0.00 0.00 36.50 2.92
221 672 1.618343 TGTCAAGATCAGTCGGCTCAA 59.382 47.619 0.00 0.00 0.00 3.02
222 673 2.037121 TGTCAAGATCAGTCGGCTCAAA 59.963 45.455 0.00 0.00 0.00 2.69
273 724 5.933790 TGAGCATTCATAAACGTTTGTACC 58.066 37.500 23.46 5.45 0.00 3.34
274 725 5.470437 TGAGCATTCATAAACGTTTGTACCA 59.530 36.000 23.46 3.14 0.00 3.25
318 783 5.291971 GTCTTTGGCAACTGAAATGTGAAT 58.708 37.500 0.00 0.00 37.61 2.57
326 791 7.037438 GGCAACTGAAATGTGAATGTAATCAT 58.963 34.615 0.00 0.00 35.59 2.45
398 863 8.428063 TGGTTCATGTTCAAATAAAGGAATTGT 58.572 29.630 0.00 0.00 0.00 2.71
412 877 9.927668 ATAAAGGAATTGTTTACCATCACTTTG 57.072 29.630 0.00 0.00 0.00 2.77
427 892 4.722700 TTGCTCTTGCTCGGCCCC 62.723 66.667 0.00 0.00 40.48 5.80
463 929 1.144503 CCATCCTCCCTGCAAATAGCT 59.855 52.381 0.00 0.00 45.94 3.32
474 940 3.273434 TGCAAATAGCTCGCTCTTGATT 58.727 40.909 14.37 0.00 45.94 2.57
494 960 3.801997 CCTCAGCCGCCCAGGATT 61.802 66.667 0.00 0.00 45.00 3.01
505 971 1.369091 CCCAGGATTTCAAGCGTCGG 61.369 60.000 0.00 0.00 0.00 4.79
529 995 0.673644 CCTTCCCGATCACAAGCGTT 60.674 55.000 0.00 0.00 30.76 4.84
531 997 0.250124 TTCCCGATCACAAGCGTTGT 60.250 50.000 0.00 0.00 46.75 3.32
550 1016 2.037121 TGTCGCCTTCTTCAATCTCACA 59.963 45.455 0.00 0.00 0.00 3.58
612 1129 1.290955 CGGTGCCGAACTTAGGTCA 59.709 57.895 4.35 0.00 42.83 4.02
620 1137 1.275291 CGAACTTAGGTCAGGCAAGGA 59.725 52.381 0.00 0.00 0.00 3.36
621 1138 2.093447 CGAACTTAGGTCAGGCAAGGAT 60.093 50.000 0.00 0.00 0.00 3.24
622 1139 3.274288 GAACTTAGGTCAGGCAAGGATG 58.726 50.000 0.00 0.00 0.00 3.51
630 1147 2.203126 GGCAAGGATGAGGCCGAG 60.203 66.667 0.00 0.00 38.04 4.63
661 1178 1.649271 GGGGAGGATGAGGGCAATGT 61.649 60.000 0.00 0.00 0.00 2.71
662 1179 1.140312 GGGAGGATGAGGGCAATGTA 58.860 55.000 0.00 0.00 0.00 2.29
672 1189 0.538118 GGGCAATGTACTCGGTACCA 59.462 55.000 13.54 0.00 38.14 3.25
679 1196 1.260544 GTACTCGGTACCACACCCTT 58.739 55.000 13.54 0.00 45.52 3.95
684 1201 1.619827 TCGGTACCACACCCTTTACTG 59.380 52.381 13.54 0.00 45.52 2.74
685 1202 1.619827 CGGTACCACACCCTTTACTGA 59.380 52.381 13.54 0.00 45.52 3.41
686 1203 2.235402 CGGTACCACACCCTTTACTGAT 59.765 50.000 13.54 0.00 45.52 2.90
687 1204 3.606687 GGTACCACACCCTTTACTGATG 58.393 50.000 7.15 0.00 42.07 3.07
695 1212 1.340991 CCCTTTACTGATGGGTGGGTG 60.341 57.143 0.00 0.00 37.83 4.61
697 1214 1.633432 CTTTACTGATGGGTGGGTGGA 59.367 52.381 0.00 0.00 0.00 4.02
714 1231 3.985925 GGTGGACGGTATCGATCATTAAC 59.014 47.826 0.34 0.00 40.11 2.01
725 1242 2.576615 GATCATTAACTGCCCTGGACC 58.423 52.381 0.00 0.00 0.00 4.46
727 1244 0.331278 CATTAACTGCCCTGGACCCA 59.669 55.000 0.00 0.00 0.00 4.51
732 1249 0.331616 ACTGCCCTGGACCCATTTAC 59.668 55.000 0.00 0.00 0.00 2.01
734 1251 1.202099 TGCCCTGGACCCATTTACGA 61.202 55.000 0.00 0.00 0.00 3.43
740 1257 2.172717 CTGGACCCATTTACGAAGGGAT 59.827 50.000 3.32 0.00 45.80 3.85
752 1269 2.036217 ACGAAGGGATGTGTTTACGTGA 59.964 45.455 0.00 0.00 0.00 4.35
754 1271 3.682858 CGAAGGGATGTGTTTACGTGAAT 59.317 43.478 0.00 0.00 0.00 2.57
768 1285 7.495279 TGTTTACGTGAATAGTTACCAAACACT 59.505 33.333 0.00 0.00 38.12 3.55
772 1289 6.018507 ACGTGAATAGTTACCAAACACTGTTC 60.019 38.462 0.00 0.00 40.02 3.18
774 1291 7.307751 CGTGAATAGTTACCAAACACTGTTCAT 60.308 37.037 12.69 0.00 46.45 2.57
780 1297 8.057536 AGTTACCAAACACTGTTCATGTTTTA 57.942 30.769 0.49 0.00 45.71 1.52
788 1306 6.721321 ACACTGTTCATGTTTTACTTTACGG 58.279 36.000 0.00 0.00 0.00 4.02
797 1315 8.018520 TCATGTTTTACTTTACGGCATAAACAG 58.981 33.333 0.00 0.00 37.41 3.16
813 1331 3.683365 AACAGGTGATGGGCAAAAATC 57.317 42.857 0.00 0.00 0.00 2.17
827 1345 6.207417 TGGGCAAAAATCTTTGAAACAAACAA 59.793 30.769 0.00 0.00 44.03 2.83
851 1369 9.643693 CAACTCCTTTGATGCATTTTATTACTT 57.356 29.630 0.00 0.00 37.39 2.24
1021 2573 1.360551 CTCCTCTACCACCGCATCG 59.639 63.158 0.00 0.00 0.00 3.84
1062 2620 3.003173 TCCAGCCCCACCTCGAAG 61.003 66.667 0.00 0.00 0.00 3.79
1069 2627 2.492090 CCACCTCGAAGCTCCTCG 59.508 66.667 1.24 1.24 40.25 4.63
1541 3099 1.489560 AAGAAACCTGGTAGGCCGCT 61.490 55.000 0.00 0.00 39.63 5.52
1547 3105 0.539986 CCTGGTAGGCCGCTCTTAAA 59.460 55.000 0.00 0.00 37.67 1.52
1548 3106 1.141053 CCTGGTAGGCCGCTCTTAAAT 59.859 52.381 0.00 0.00 37.67 1.40
1650 3208 4.737578 AGGAGGCGATTACCTAGTTGATA 58.262 43.478 0.00 0.00 41.32 2.15
1655 3213 4.857588 GGCGATTACCTAGTTGATACGATG 59.142 45.833 0.00 0.00 0.00 3.84
1669 3227 0.246635 ACGATGGCTTTGCGAGTACT 59.753 50.000 0.00 0.00 0.00 2.73
1670 3228 1.337823 ACGATGGCTTTGCGAGTACTT 60.338 47.619 0.00 0.00 0.00 2.24
1671 3229 1.732259 CGATGGCTTTGCGAGTACTTT 59.268 47.619 0.00 0.00 0.00 2.66
1672 3230 2.474526 CGATGGCTTTGCGAGTACTTTG 60.475 50.000 0.00 0.00 0.00 2.77
1682 3265 4.682787 TGCGAGTACTTTGAGATATGGTG 58.317 43.478 0.00 0.00 0.00 4.17
1701 3284 1.227973 GAAGCGGGCTATTCTGGGG 60.228 63.158 0.00 0.00 0.00 4.96
1718 3301 1.412343 GGGGTTTGAGTGCACAAATGT 59.588 47.619 21.04 0.00 40.91 2.71
1753 3337 5.385198 GCACCTTTTAGGGGATATGATTGA 58.615 41.667 0.00 0.00 43.10 2.57
1755 3339 6.605119 CACCTTTTAGGGGATATGATTGACT 58.395 40.000 0.00 0.00 43.10 3.41
1758 3342 7.091993 ACCTTTTAGGGGATATGATTGACTTGA 60.092 37.037 0.00 0.00 40.58 3.02
1776 3360 5.941788 ACTTGATTCTGGGTTTTAGTGTCT 58.058 37.500 0.00 0.00 0.00 3.41
1896 3488 9.010029 TGGTTCTTTTCTCTTTATAATGGTCAC 57.990 33.333 0.00 0.00 0.00 3.67
1916 3508 3.802139 CACGCACACCGATGATAATAGTT 59.198 43.478 0.00 0.00 41.02 2.24
1917 3509 4.049186 ACGCACACCGATGATAATAGTTC 58.951 43.478 0.00 0.00 41.02 3.01
1952 3544 4.082463 CCGGTTATTGTTGTAATGTTGGCT 60.082 41.667 0.00 0.00 0.00 4.75
2019 3616 5.245751 TGGCCACATGTTTGATGTTTATCTT 59.754 36.000 0.00 0.00 34.31 2.40
2020 3617 6.435591 TGGCCACATGTTTGATGTTTATCTTA 59.564 34.615 0.00 0.00 34.31 2.10
2047 3644 0.394565 GAGCTTATCTGTCGGCCCAT 59.605 55.000 0.00 0.00 0.00 4.00
2076 3673 3.936564 AGAGAGCAGAAAGACCATGAAC 58.063 45.455 0.00 0.00 0.00 3.18
2079 3676 3.006247 GAGCAGAAAGACCATGAACCTC 58.994 50.000 0.00 0.00 0.00 3.85
2098 3695 5.756918 ACCTCTGCTGTCTAGTTCTACATA 58.243 41.667 0.00 0.00 0.00 2.29
2227 3824 9.739276 TCTAGAAATATGTTCAACATGACCTTT 57.261 29.630 13.65 7.43 39.53 3.11
2263 3869 2.429610 TCCTTGGCCTCTTACACGATAC 59.570 50.000 3.32 0.00 0.00 2.24
2448 4060 3.751518 TCTTAGCCCACTTTCAGTTTCC 58.248 45.455 0.00 0.00 0.00 3.13
2458 4070 5.009210 CCACTTTCAGTTTCCGTATTTTCCA 59.991 40.000 0.00 0.00 0.00 3.53
2483 4095 6.913873 AAAAAGTTCTTAACTACGCAGACA 57.086 33.333 0.00 0.00 41.91 3.41
2492 4104 3.476295 ACTACGCAGACAAATGCATTG 57.524 42.857 13.82 9.78 46.87 2.82
2554 4166 7.011389 TGCCATGAAACTTAACATATCTCTTCG 59.989 37.037 0.00 0.00 0.00 3.79
2704 4317 3.562182 CCCTTTTTAACATATCGGCCCT 58.438 45.455 0.00 0.00 0.00 5.19
2715 4328 2.990066 ATCGGCCCTCTTTGAGTTAG 57.010 50.000 0.00 0.00 0.00 2.34
2976 4591 6.542821 TGGGAATTTAGAAGAGTGTTCACAT 58.457 36.000 2.50 0.00 0.00 3.21
2991 4606 5.986135 GTGTTCACATCATCTAGTATGGACC 59.014 44.000 0.00 0.00 0.00 4.46
2994 4609 4.278419 TCACATCATCTAGTATGGACCGTG 59.722 45.833 0.00 0.00 0.00 4.94
3149 4765 4.443913 TTCGGACATACATCAAACGAGA 57.556 40.909 0.00 0.00 0.00 4.04
3181 4797 9.965902 ATCCATGACAGTAGAAAATTAAACTCT 57.034 29.630 0.00 0.00 0.00 3.24
3200 4816 8.548880 AAACTCTACTGGTTGGAGCTTATATA 57.451 34.615 0.00 0.00 0.00 0.86
3303 4919 7.201696 GCTCGTAAAGATTGGGATGAATTTACA 60.202 37.037 0.00 0.00 34.39 2.41
3691 5308 3.374058 CCGGAATTACTTGTCGCTCAAAT 59.626 43.478 0.00 0.00 35.48 2.32
3692 5309 4.334443 CGGAATTACTTGTCGCTCAAATG 58.666 43.478 0.00 0.00 35.48 2.32
3696 5313 4.944962 TTACTTGTCGCTCAAATGGATG 57.055 40.909 0.00 0.00 35.48 3.51
3702 5319 5.529581 TGTCGCTCAAATGGATGTATCTA 57.470 39.130 0.00 0.00 0.00 1.98
3703 5320 5.532557 TGTCGCTCAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 0.00 2.43
3704 5321 4.387256 GTCGCTCAAATGGATGTATCTAGC 59.613 45.833 0.00 0.00 0.00 3.42
3705 5322 4.039124 TCGCTCAAATGGATGTATCTAGCA 59.961 41.667 0.00 0.00 0.00 3.49
3706 5323 4.151335 CGCTCAAATGGATGTATCTAGCAC 59.849 45.833 0.00 0.00 0.00 4.40
3707 5324 5.303971 GCTCAAATGGATGTATCTAGCACT 58.696 41.667 0.00 0.00 0.00 4.40
3708 5325 6.459066 GCTCAAATGGATGTATCTAGCACTA 58.541 40.000 0.00 0.00 0.00 2.74
3709 5326 6.931281 GCTCAAATGGATGTATCTAGCACTAA 59.069 38.462 0.00 0.00 0.00 2.24
3710 5327 7.442364 GCTCAAATGGATGTATCTAGCACTAAA 59.558 37.037 0.00 0.00 0.00 1.85
3735 5352 3.386402 AGTGCTAGATTTAGTCTGAGCCC 59.614 47.826 0.00 0.00 37.83 5.19
3769 5386 3.249799 TCATGTCAAACTTTGCAGTACGG 59.750 43.478 0.00 0.00 30.68 4.02
3786 5403 9.214957 TGCAGTACGGATAATTAGGAATTTATG 57.785 33.333 0.00 0.00 32.38 1.90
3854 5472 5.269189 CATGAACCAGGGGTTATTTTAGGT 58.731 41.667 0.00 0.00 46.95 3.08
3890 5508 6.040391 TGTGCATTTAAAACAGTAGGCTTCTT 59.960 34.615 0.00 0.00 0.00 2.52
3946 5570 9.216117 GGCTTCTTGAGATTAGTTAAAGTACAA 57.784 33.333 0.00 0.00 0.00 2.41
4115 5744 6.147821 ACATCAAATTCAACAAGGACTAGACG 59.852 38.462 0.00 0.00 0.00 4.18
4212 5845 1.459592 GCAAGTAGCATCGTTCACGTT 59.540 47.619 0.00 0.00 44.79 3.99
4335 5971 3.832490 TCTTGCACTAGAGGAGCTTTACA 59.168 43.478 0.00 0.00 0.00 2.41
4337 5973 4.128925 TGCACTAGAGGAGCTTTACATG 57.871 45.455 0.00 0.00 0.00 3.21
4344 5980 1.207329 AGGAGCTTTACATGGACGTCC 59.793 52.381 28.17 28.17 0.00 4.79
4415 6051 8.143835 CACATCTGAAAGGGAAAACATAAAACT 58.856 33.333 0.00 0.00 0.00 2.66
4438 6074 9.965902 AACTGTAAATCCTGATCTTCAAGTAAT 57.034 29.630 0.00 0.00 0.00 1.89
4450 6086 8.727149 TGATCTTCAAGTAATTGGGGATCTTAT 58.273 33.333 24.36 5.39 34.64 1.73
4482 8580 1.402588 CCGATCTGATCAGGAGATGCG 60.403 57.143 22.42 15.21 33.72 4.73
4496 8594 5.752472 CAGGAGATGCGCCTTATAGATTATG 59.248 44.000 4.18 0.00 29.38 1.90
4639 8737 1.819288 GGCAAAAGGAGGTTAGCTTCC 59.181 52.381 0.00 0.00 40.80 3.46
4722 8820 0.602106 CTATGGCCTCCAGCACATCG 60.602 60.000 3.32 0.00 46.50 3.84
4729 8827 1.473965 CCTCCAGCACATCGCAACTAT 60.474 52.381 0.00 0.00 46.13 2.12
4811 10309 7.994425 TGGTGAGTGTGTATCATAACAAAAT 57.006 32.000 0.00 0.00 0.00 1.82
4832 10330 8.400947 CAAAATGAACCACATCCATTCTAGTAG 58.599 37.037 0.00 0.00 38.38 2.57
4848 10346 8.596781 ATTCTAGTAGAATGTAGGAGTGTGTT 57.403 34.615 22.01 0.00 42.90 3.32
4849 10347 9.696572 ATTCTAGTAGAATGTAGGAGTGTGTTA 57.303 33.333 22.01 0.00 42.90 2.41
5012 14378 2.991167 ATCCTATTGCCCGGCTCCCT 62.991 60.000 11.61 0.00 0.00 4.20
5041 14408 2.108362 CCCTAAACCCTAGCCGCG 59.892 66.667 0.00 0.00 0.00 6.46
5069 14436 1.153549 GCCGCGACCTCTTCTTCAT 60.154 57.895 8.23 0.00 0.00 2.57
5077 14444 0.531532 CCTCTTCTTCATCGCGCCAT 60.532 55.000 0.00 0.00 0.00 4.40
5117 14484 4.180946 CGCTCGAGTCCCCGTCAG 62.181 72.222 15.13 0.00 0.00 3.51
5141 14508 1.358787 TCCTCCTTCCCGTACAACCTA 59.641 52.381 0.00 0.00 0.00 3.08
5153 14520 0.251922 ACAACCTACGCCCTAGACCA 60.252 55.000 0.00 0.00 0.00 4.02
5414 14837 6.214005 TGTCCTCAATATCATGGCATCATAGA 59.786 38.462 0.00 0.00 31.33 1.98
5428 14851 6.670902 TGGCATCATAGATGATCCTTGAGATA 59.329 38.462 10.95 0.45 45.23 1.98
5549 14972 2.132089 TTTTCCGGGAGCCCATTCGT 62.132 55.000 0.00 0.00 35.37 3.85
5573 14996 3.805207 AGAACTCCAAAGTTAAGCGTGT 58.195 40.909 0.00 0.00 45.80 4.49
5811 15290 2.879233 ATGTGCCGGACTGGACGTT 61.879 57.895 5.05 0.00 42.00 3.99
5917 15398 8.135382 TGGCTTAATAGGAATGATAGACTACC 57.865 38.462 0.00 0.00 0.00 3.18
5989 15470 0.313987 AAAGTTAAGCGTGCTTGGCC 59.686 50.000 16.98 0.00 37.47 5.36
6122 15604 1.822371 TGGCGCATGTAGTCTTCTGTA 59.178 47.619 10.83 0.00 0.00 2.74
6169 15651 1.878953 ATCAGTGTTCGTTGGACACC 58.121 50.000 4.77 0.00 46.57 4.16
6265 15747 6.699575 ACTGTAACATGAAAAGCACTTTCT 57.300 33.333 0.00 0.00 43.42 2.52
6305 15828 3.260884 TGAAGCACCGATTAGGAGAGTTT 59.739 43.478 0.00 0.00 45.00 2.66
6307 15830 5.128827 TGAAGCACCGATTAGGAGAGTTTAT 59.871 40.000 0.00 0.00 45.00 1.40
6383 15906 7.584987 AGAGTTAAATTGTCGGTTGAAATGAG 58.415 34.615 0.00 0.00 0.00 2.90
6404 15927 5.078411 AGTATACTTCAAGGAGTGCAGTG 57.922 43.478 0.00 0.00 34.34 3.66
6406 15929 2.246719 ACTTCAAGGAGTGCAGTGAC 57.753 50.000 0.00 0.00 31.95 3.67
6496 16025 6.763303 ATTTGCCTAAAATGAACGTGTTTC 57.237 33.333 0.00 0.00 37.09 2.78
6500 16029 4.909880 GCCTAAAATGAACGTGTTTCTGTC 59.090 41.667 0.00 0.00 34.97 3.51
6577 16106 2.880890 ACAAATGTTCTCACAGCTGACC 59.119 45.455 23.35 1.54 35.94 4.02
6587 16116 5.510430 TCTCACAGCTGACCTTTAGATCTA 58.490 41.667 23.35 0.00 0.00 1.98
6731 16263 8.869897 TCACTCATCGTTGTGAAGATAAAATAC 58.130 33.333 2.74 0.00 39.82 1.89
6796 16328 8.386606 GTGTATCTGAGAAATGTTTCTGTCATC 58.613 37.037 12.39 0.00 46.84 2.92
6809 16341 6.092122 TGTTTCTGTCATCTGGTAAATTAGCG 59.908 38.462 0.00 0.00 0.00 4.26
6813 16345 3.621268 GTCATCTGGTAAATTAGCGTGCA 59.379 43.478 0.00 0.00 0.00 4.57
6816 16348 5.356751 TCATCTGGTAAATTAGCGTGCAATT 59.643 36.000 0.00 0.00 0.00 2.32
6821 16353 3.676291 AAATTAGCGTGCAATTGGGTT 57.324 38.095 7.72 0.00 0.00 4.11
6827 16359 2.625790 AGCGTGCAATTGGGTTTCTTTA 59.374 40.909 7.72 0.00 0.00 1.85
6828 16360 3.258123 AGCGTGCAATTGGGTTTCTTTAT 59.742 39.130 7.72 0.00 0.00 1.40
6829 16361 4.461081 AGCGTGCAATTGGGTTTCTTTATA 59.539 37.500 7.72 0.00 0.00 0.98
7033 16566 3.131577 GTCGGACAACATGGTGGTATCTA 59.868 47.826 16.70 0.00 0.00 1.98
7037 16570 5.694910 CGGACAACATGGTGGTATCTAATAC 59.305 44.000 16.70 0.00 35.00 1.89
7086 16619 0.033208 TCCTGCCCATTCCACATTCC 60.033 55.000 0.00 0.00 0.00 3.01
7266 16800 4.082026 CCTTTTGTGAGATTCAACCATCCC 60.082 45.833 0.00 0.00 0.00 3.85
7391 16928 4.077108 TCGGACATATAGTAATGGAGCGT 58.923 43.478 0.00 0.00 0.00 5.07
7401 16938 3.961408 AGTAATGGAGCGTCCTTCTGTAT 59.039 43.478 5.77 0.00 37.46 2.29
7409 16946 5.921408 GGAGCGTCCTTCTGTATAAGTAATG 59.079 44.000 0.00 0.00 32.53 1.90
7474 17011 9.617523 TGTATTTCTTCTCTTGATGCATTGATA 57.382 29.630 0.00 0.00 0.00 2.15
7515 17088 9.764363 TTAATGATGTCAGGCTGTTAGTTATAG 57.236 33.333 15.27 0.00 0.00 1.31
7522 17095 6.920758 GTCAGGCTGTTAGTTATAGATCTGTG 59.079 42.308 15.27 0.00 0.00 3.66
7526 17100 7.560262 AGGCTGTTAGTTATAGATCTGTGTGTA 59.440 37.037 5.18 0.00 0.00 2.90
7534 17108 8.478066 AGTTATAGATCTGTGTGTATCTTGCAA 58.522 33.333 5.18 0.00 34.36 4.08
7536 17110 4.898320 AGATCTGTGTGTATCTTGCAACA 58.102 39.130 0.00 0.00 0.00 3.33
7547 17121 3.586100 TCTTGCAACACGTATAGAGCA 57.414 42.857 0.00 0.00 0.00 4.26
7549 17123 4.311606 TCTTGCAACACGTATAGAGCAAA 58.688 39.130 0.00 4.16 40.87 3.68
7550 17124 4.935205 TCTTGCAACACGTATAGAGCAAAT 59.065 37.500 0.00 0.00 40.87 2.32
7551 17125 4.857871 TGCAACACGTATAGAGCAAATC 57.142 40.909 0.00 0.00 0.00 2.17
7552 17126 4.503910 TGCAACACGTATAGAGCAAATCT 58.496 39.130 0.00 0.00 42.47 2.40
7554 17128 5.163864 TGCAACACGTATAGAGCAAATCTTG 60.164 40.000 0.00 0.00 39.64 3.02
7555 17129 5.163854 GCAACACGTATAGAGCAAATCTTGT 60.164 40.000 0.00 0.00 39.64 3.16
7557 17131 7.412563 GCAACACGTATAGAGCAAATCTTGTTA 60.413 37.037 0.00 0.00 39.64 2.41
7558 17132 8.440059 CAACACGTATAGAGCAAATCTTGTTAA 58.560 33.333 0.00 0.00 39.64 2.01
7560 17134 9.811995 ACACGTATAGAGCAAATCTTGTTAATA 57.188 29.630 0.00 0.00 39.64 0.98
7569 17143 9.745323 GAGCAAATCTTGTTAATAAAAACATGC 57.255 29.630 0.00 4.80 39.18 4.06
7570 17144 9.270640 AGCAAATCTTGTTAATAAAAACATGCA 57.729 25.926 12.20 0.00 40.38 3.96
7571 17145 9.316859 GCAAATCTTGTTAATAAAAACATGCAC 57.683 29.630 0.00 0.00 38.93 4.57
7673 17297 2.226330 TGTTTTCAGGTCCCAATGACG 58.774 47.619 0.00 0.00 45.46 4.35
7829 17453 2.674177 CGTAACGAACCAAGGCAGAGAT 60.674 50.000 0.00 0.00 0.00 2.75
7859 17483 0.036671 TGCACATGTCTCAGCTCAGG 60.037 55.000 0.00 0.00 0.00 3.86
7890 17514 1.949525 GCAAGCACTGACAAGAGGAAA 59.050 47.619 0.00 0.00 0.00 3.13
7892 17516 3.753272 GCAAGCACTGACAAGAGGAAATA 59.247 43.478 0.00 0.00 0.00 1.40
7893 17517 4.378874 GCAAGCACTGACAAGAGGAAATAC 60.379 45.833 0.00 0.00 0.00 1.89
7912 17536 7.660208 GGAAATACAACAAGAGTAGGACTGAAA 59.340 37.037 0.00 0.00 0.00 2.69
7918 17542 7.441458 ACAACAAGAGTAGGACTGAAACAATAC 59.559 37.037 0.00 0.00 0.00 1.89
7929 17553 4.038642 ACTGAAACAATACCAAACCGCATT 59.961 37.500 0.00 0.00 0.00 3.56
7962 17611 1.964552 CACCCTCTGCAATCAGGATC 58.035 55.000 7.46 0.00 40.69 3.36
8017 17666 3.046870 TTGCCCACGATTGCAACC 58.953 55.556 0.00 0.00 42.19 3.77
8046 17695 0.798776 CAATCAACAGGCAGACCGAC 59.201 55.000 0.00 0.00 42.76 4.79
8047 17696 0.321653 AATCAACAGGCAGACCGACC 60.322 55.000 0.00 0.00 42.76 4.79
8048 17697 2.507110 ATCAACAGGCAGACCGACCG 62.507 60.000 0.00 0.00 42.76 4.79
8049 17698 4.003788 AACAGGCAGACCGACCGG 62.004 66.667 6.94 6.94 42.76 5.28
8078 17727 1.267806 ACAAGCCGCTGAAATCAACTG 59.732 47.619 0.00 0.00 0.00 3.16
8088 17737 4.301628 CTGAAATCAACTGCCCTGTTTTC 58.698 43.478 0.00 0.00 34.91 2.29
8119 17768 8.131100 TCTATATTTGTACTACAACCGTACAGC 58.869 37.037 0.82 0.00 45.41 4.40
8123 17772 0.524862 ACTACAACCGTACAGCCTCG 59.475 55.000 0.00 0.00 0.00 4.63
8170 17819 5.523552 TGATTATAAGATTGTGCGTCCTGTG 59.476 40.000 0.00 0.00 0.00 3.66
8185 17834 5.163982 GCGTCCTGTGTGTAGATTAAAGAAC 60.164 44.000 0.00 0.00 0.00 3.01
8228 17877 0.887387 CGGGAATCCCACACGTTTGT 60.887 55.000 19.81 0.00 45.83 2.83
8370 18019 3.344515 GTCCATTCTACAGTTGGTTCCC 58.655 50.000 0.00 0.00 0.00 3.97
8438 18091 2.126307 CTGGACTCACTGGACGCG 60.126 66.667 3.53 3.53 0.00 6.01
8456 18109 0.811616 CGCAGCCCTGGTCAGATAAC 60.812 60.000 0.00 0.00 0.00 1.89
8503 18156 3.260884 TGCGATTATCTTATCCTGGGGTC 59.739 47.826 0.00 0.00 0.00 4.46
8506 18159 5.482908 CGATTATCTTATCCTGGGGTCTTG 58.517 45.833 0.00 0.00 0.00 3.02
8507 18160 5.246203 CGATTATCTTATCCTGGGGTCTTGA 59.754 44.000 0.00 0.00 0.00 3.02
8508 18161 6.070538 CGATTATCTTATCCTGGGGTCTTGAT 60.071 42.308 0.00 0.00 0.00 2.57
8509 18162 4.989875 ATCTTATCCTGGGGTCTTGATG 57.010 45.455 0.00 0.00 0.00 3.07
8510 18163 3.736094 TCTTATCCTGGGGTCTTGATGT 58.264 45.455 0.00 0.00 0.00 3.06
8513 18166 1.741028 TCCTGGGGTCTTGATGTTCA 58.259 50.000 0.00 0.00 0.00 3.18
8514 18167 2.278245 TCCTGGGGTCTTGATGTTCAT 58.722 47.619 0.00 0.00 0.00 2.57
8515 18168 2.025981 TCCTGGGGTCTTGATGTTCATG 60.026 50.000 0.00 0.00 0.00 3.07
8570 18223 7.412853 GCCTATCTGTCATGAGTTTTGTATTG 58.587 38.462 0.00 0.00 0.00 1.90
8591 18244 2.154462 GCAGTATCAGCACCTGTTTGT 58.846 47.619 0.00 0.00 32.61 2.83
8592 18245 2.554032 GCAGTATCAGCACCTGTTTGTT 59.446 45.455 0.00 0.00 32.61 2.83
8593 18246 3.004734 GCAGTATCAGCACCTGTTTGTTT 59.995 43.478 0.00 0.00 32.61 2.83
8594 18247 4.539870 CAGTATCAGCACCTGTTTGTTTG 58.460 43.478 0.00 0.00 32.61 2.93
8663 18316 8.327941 ACGCGAAAGGTATGTATAGATACTTA 57.672 34.615 15.93 0.00 34.41 2.24
8664 18317 8.233190 ACGCGAAAGGTATGTATAGATACTTAC 58.767 37.037 15.93 13.50 40.41 2.34
8665 18318 8.449397 CGCGAAAGGTATGTATAGATACTTACT 58.551 37.037 17.00 5.92 40.69 2.24
8679 18332 1.002087 ACTTACTTGCTTCCAGTCCCG 59.998 52.381 0.00 0.00 0.00 5.14
8703 18356 3.082701 AGCTCAGCTGGGCTCCTC 61.083 66.667 35.62 7.76 37.57 3.71
8722 18376 2.045536 CTTCCTCCCCACAGCTGC 60.046 66.667 15.27 0.00 0.00 5.25
8772 20491 2.128853 AAATTGCACCGTGTCCAGCG 62.129 55.000 0.00 0.00 0.00 5.18
8858 20585 4.528039 CCGCCTTCCCCATGCCAT 62.528 66.667 0.00 0.00 0.00 4.40
8859 20586 3.221389 CGCCTTCCCCATGCCATG 61.221 66.667 0.00 0.00 0.00 3.66
8860 20587 2.042639 GCCTTCCCCATGCCATGT 60.043 61.111 3.63 0.00 0.00 3.21
8861 20588 1.229927 GCCTTCCCCATGCCATGTA 59.770 57.895 3.63 0.00 0.00 2.29
8862 20589 0.178953 GCCTTCCCCATGCCATGTAT 60.179 55.000 3.63 0.00 0.00 2.29
8863 20590 1.624336 CCTTCCCCATGCCATGTATG 58.376 55.000 3.63 0.00 0.00 2.39
8864 20591 0.963962 CTTCCCCATGCCATGTATGC 59.036 55.000 3.63 0.00 0.00 3.14
8868 20595 2.253154 CATGCCATGTATGCGCGG 59.747 61.111 8.83 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 485 4.322801 GGAGGTGATATTATTGGTCCCTCG 60.323 50.000 0.00 0.00 38.47 4.63
85 536 6.058833 TGCAAATACTGGTGTAAGAGTCAAA 58.941 36.000 0.00 0.00 31.80 2.69
137 588 5.447279 CGTGGTACATTGAAAGAATAGTGCC 60.447 44.000 0.00 0.00 44.52 5.01
175 626 4.260985 ACAAAGTTGTCACAGACACATCA 58.739 39.130 0.00 0.00 42.60 3.07
211 662 1.469335 TTCGAGGGTTTGAGCCGACT 61.469 55.000 0.00 0.00 41.56 4.18
221 672 3.317993 CCTTGTGAACATTTTCGAGGGTT 59.682 43.478 0.00 0.00 34.04 4.11
222 673 2.884639 CCTTGTGAACATTTTCGAGGGT 59.115 45.455 0.00 0.00 34.04 4.34
326 791 4.839121 ACGCCTCCTTAATTGTTGTGATA 58.161 39.130 0.00 0.00 0.00 2.15
335 800 7.462571 AAAAACTCATTACGCCTCCTTAATT 57.537 32.000 0.00 0.00 0.00 1.40
368 833 7.786030 TCCTTTATTTGAACATGAACCAAACA 58.214 30.769 0.00 0.00 33.33 2.83
398 863 4.144297 AGCAAGAGCAAAGTGATGGTAAA 58.856 39.130 0.00 0.00 45.49 2.01
453 918 2.385013 TCAAGAGCGAGCTATTTGCA 57.615 45.000 1.85 0.00 45.94 4.08
463 929 0.107993 CTGAGGCCAATCAAGAGCGA 60.108 55.000 5.01 0.00 0.00 4.93
529 995 2.037121 TGTGAGATTGAAGAAGGCGACA 59.963 45.455 0.00 0.00 0.00 4.35
531 997 2.688507 GTGTGAGATTGAAGAAGGCGA 58.311 47.619 0.00 0.00 0.00 5.54
537 1003 1.338105 CCAGGCGTGTGAGATTGAAGA 60.338 52.381 5.57 0.00 0.00 2.87
540 1006 0.396435 AACCAGGCGTGTGAGATTGA 59.604 50.000 5.57 0.00 0.00 2.57
607 1085 1.919600 GCCTCATCCTTGCCTGACCT 61.920 60.000 0.00 0.00 0.00 3.85
612 1129 2.688666 TCGGCCTCATCCTTGCCT 60.689 61.111 0.00 0.00 43.12 4.75
620 1137 2.841988 GCTCCCTCTCGGCCTCAT 60.842 66.667 0.00 0.00 0.00 2.90
621 1138 3.608759 AAGCTCCCTCTCGGCCTCA 62.609 63.158 0.00 0.00 0.00 3.86
622 1139 2.762043 AAGCTCCCTCTCGGCCTC 60.762 66.667 0.00 0.00 0.00 4.70
643 1160 1.140312 TACATTGCCCTCATCCTCCC 58.860 55.000 0.00 0.00 0.00 4.30
656 1173 2.613691 GGTGTGGTACCGAGTACATTG 58.386 52.381 7.57 0.00 40.41 2.82
679 1196 0.988832 GTCCACCCACCCATCAGTAA 59.011 55.000 0.00 0.00 0.00 2.24
684 1201 1.342672 ATACCGTCCACCCACCCATC 61.343 60.000 0.00 0.00 0.00 3.51
685 1202 1.307517 ATACCGTCCACCCACCCAT 60.308 57.895 0.00 0.00 0.00 4.00
686 1203 1.991167 GATACCGTCCACCCACCCA 60.991 63.158 0.00 0.00 0.00 4.51
687 1204 2.905681 GATACCGTCCACCCACCC 59.094 66.667 0.00 0.00 0.00 4.61
695 1212 3.673809 GCAGTTAATGATCGATACCGTCC 59.326 47.826 0.00 0.00 37.05 4.79
697 1214 3.554337 GGGCAGTTAATGATCGATACCGT 60.554 47.826 0.00 0.00 37.05 4.83
714 1231 0.748005 CGTAAATGGGTCCAGGGCAG 60.748 60.000 0.00 0.00 0.00 4.85
725 1242 5.446741 CGTAAACACATCCCTTCGTAAATGG 60.447 44.000 0.00 0.00 0.00 3.16
727 1244 5.121142 CACGTAAACACATCCCTTCGTAAAT 59.879 40.000 0.00 0.00 0.00 1.40
732 1249 2.679450 TCACGTAAACACATCCCTTCG 58.321 47.619 0.00 0.00 0.00 3.79
734 1251 5.801380 ACTATTCACGTAAACACATCCCTT 58.199 37.500 0.00 0.00 0.00 3.95
740 1257 7.279536 TGTTTGGTAACTATTCACGTAAACACA 59.720 33.333 0.00 0.00 35.24 3.72
752 1269 7.817418 ACATGAACAGTGTTTGGTAACTATT 57.183 32.000 10.45 0.00 35.24 1.73
754 1271 7.633193 AAACATGAACAGTGTTTGGTAACTA 57.367 32.000 10.45 0.00 45.27 2.24
768 1285 5.752892 TGCCGTAAAGTAAAACATGAACA 57.247 34.783 0.00 0.00 0.00 3.18
772 1289 7.272515 CCTGTTTATGCCGTAAAGTAAAACATG 59.727 37.037 0.00 0.00 35.52 3.21
774 1291 6.262720 ACCTGTTTATGCCGTAAAGTAAAACA 59.737 34.615 0.00 0.00 33.11 2.83
780 1297 4.010667 TCACCTGTTTATGCCGTAAAGT 57.989 40.909 0.00 0.00 33.11 2.66
788 1306 1.473258 TGCCCATCACCTGTTTATGC 58.527 50.000 0.00 0.00 0.00 3.14
797 1315 4.270245 TCAAAGATTTTTGCCCATCACC 57.730 40.909 3.87 0.00 42.71 4.02
813 1331 7.674705 GCATCAAAGGAGTTGTTTGTTTCAAAG 60.675 37.037 0.00 0.00 38.47 2.77
856 1374 9.617053 AGGGCTACCATAAGTATAAGAGTAAAT 57.383 33.333 0.00 0.00 40.13 1.40
857 1375 9.443365 AAGGGCTACCATAAGTATAAGAGTAAA 57.557 33.333 0.00 0.00 40.13 2.01
858 1376 9.086758 GAAGGGCTACCATAAGTATAAGAGTAA 57.913 37.037 0.00 0.00 40.13 2.24
859 1377 7.673082 GGAAGGGCTACCATAAGTATAAGAGTA 59.327 40.741 0.00 0.00 40.13 2.59
860 1378 6.497606 GGAAGGGCTACCATAAGTATAAGAGT 59.502 42.308 0.00 0.00 40.13 3.24
861 1379 6.350277 CGGAAGGGCTACCATAAGTATAAGAG 60.350 46.154 0.00 0.00 40.13 2.85
862 1380 5.479375 CGGAAGGGCTACCATAAGTATAAGA 59.521 44.000 0.00 0.00 40.13 2.10
863 1381 5.721232 CGGAAGGGCTACCATAAGTATAAG 58.279 45.833 0.00 0.00 40.13 1.73
864 1382 5.733620 CGGAAGGGCTACCATAAGTATAA 57.266 43.478 0.00 0.00 40.13 0.98
1021 2573 2.835895 GGAGAGGAGGCGAGGGAC 60.836 72.222 0.00 0.00 0.00 4.46
1518 3076 1.074889 GGCCTACCAGGTTTCTTGGAA 59.925 52.381 0.00 0.00 37.80 3.53
1589 3147 3.332783 AGGACCTAAACCTTAAACCCCAG 59.667 47.826 0.00 0.00 33.55 4.45
1650 3208 0.246635 AGTACTCGCAAAGCCATCGT 59.753 50.000 0.00 0.00 0.00 3.73
1655 3213 2.413837 TCTCAAAGTACTCGCAAAGCC 58.586 47.619 0.00 0.00 0.00 4.35
1669 3227 2.421388 CCCGCTTCCACCATATCTCAAA 60.421 50.000 0.00 0.00 0.00 2.69
1670 3228 1.140852 CCCGCTTCCACCATATCTCAA 59.859 52.381 0.00 0.00 0.00 3.02
1671 3229 0.758734 CCCGCTTCCACCATATCTCA 59.241 55.000 0.00 0.00 0.00 3.27
1672 3230 0.603975 GCCCGCTTCCACCATATCTC 60.604 60.000 0.00 0.00 0.00 2.75
1682 3265 1.227973 CCCAGAATAGCCCGCTTCC 60.228 63.158 0.00 0.00 0.00 3.46
1701 3284 4.805192 ATGAACACATTTGTGCACTCAAAC 59.195 37.500 19.41 0.00 44.66 2.93
1728 3311 3.403322 TCATATCCCCTAAAAGGTGCCT 58.597 45.455 0.00 0.00 31.93 4.75
1753 3337 5.941788 AGACACTAAAACCCAGAATCAAGT 58.058 37.500 0.00 0.00 0.00 3.16
1755 3339 5.938125 GCTAGACACTAAAACCCAGAATCAA 59.062 40.000 0.00 0.00 0.00 2.57
1758 3342 5.485708 AGAGCTAGACACTAAAACCCAGAAT 59.514 40.000 0.00 0.00 0.00 2.40
1896 3488 4.299155 AGAACTATTATCATCGGTGTGCG 58.701 43.478 0.00 0.00 0.00 5.34
1916 3508 1.491668 TAACCGGGCATAGCAAGAGA 58.508 50.000 6.32 0.00 0.00 3.10
1917 3509 2.549754 CAATAACCGGGCATAGCAAGAG 59.450 50.000 6.32 0.00 0.00 2.85
2019 3616 7.230913 GGGCCGACAGATAAGCTCTTATATATA 59.769 40.741 0.00 0.00 36.02 0.86
2020 3617 6.041069 GGGCCGACAGATAAGCTCTTATATAT 59.959 42.308 0.00 0.00 36.02 0.86
2047 3644 5.070446 TGGTCTTTCTGCTCTCTTTTCAGTA 59.930 40.000 0.00 0.00 0.00 2.74
2076 3673 6.701145 TTATGTAGAACTAGACAGCAGAGG 57.299 41.667 0.00 0.00 0.00 3.69
2098 3695 8.962884 AGATACAGTTTGGCAAAAGAAAAATT 57.037 26.923 15.29 0.00 0.00 1.82
2146 3743 9.701098 CCATGTGCTTGCAGAAATTATTATTAT 57.299 29.630 0.00 0.00 0.00 1.28
2147 3744 8.911965 TCCATGTGCTTGCAGAAATTATTATTA 58.088 29.630 0.00 0.00 0.00 0.98
2148 3745 7.784037 TCCATGTGCTTGCAGAAATTATTATT 58.216 30.769 0.00 0.00 0.00 1.40
2149 3746 7.350744 TCCATGTGCTTGCAGAAATTATTAT 57.649 32.000 0.00 0.00 0.00 1.28
2150 3747 6.772360 TCCATGTGCTTGCAGAAATTATTA 57.228 33.333 0.00 0.00 0.00 0.98
2151 3748 5.664294 TCCATGTGCTTGCAGAAATTATT 57.336 34.783 0.00 0.00 0.00 1.40
2152 3749 5.186409 AGTTCCATGTGCTTGCAGAAATTAT 59.814 36.000 0.00 0.00 0.00 1.28
2153 3750 4.523943 AGTTCCATGTGCTTGCAGAAATTA 59.476 37.500 0.00 0.00 0.00 1.40
2154 3751 3.322828 AGTTCCATGTGCTTGCAGAAATT 59.677 39.130 0.00 0.00 0.00 1.82
2227 3824 1.946768 CAAGGAACGAACAGCTGGAAA 59.053 47.619 19.93 0.00 0.00 3.13
2263 3869 1.531423 ATTGAGGTTCTGCTGCAGTG 58.469 50.000 27.24 9.01 32.61 3.66
2476 4088 3.676172 ACATTTCAATGCATTTGTCTGCG 59.324 39.130 9.83 0.00 45.30 5.18
2483 4095 7.228906 TCAATGGTCAAACATTTCAATGCATTT 59.771 29.630 9.83 0.00 38.94 2.32
2492 4104 7.517259 GCTTGAAGTTCAATGGTCAAACATTTC 60.517 37.037 18.35 0.00 38.94 2.17
2554 4166 5.499139 TCGAAATTGGCATGGAGAATTAC 57.501 39.130 0.00 0.00 0.00 1.89
2559 4171 3.003394 ACATCGAAATTGGCATGGAGA 57.997 42.857 0.00 0.00 0.00 3.71
2560 4172 3.788333 AACATCGAAATTGGCATGGAG 57.212 42.857 0.00 0.00 0.00 3.86
2639 4252 8.244802 TGAGAGTACAGTTAAGCTACTCAATTC 58.755 37.037 11.96 3.35 36.00 2.17
2643 4256 7.520451 TTTGAGAGTACAGTTAAGCTACTCA 57.480 36.000 11.96 0.00 36.00 3.41
2679 4292 4.202212 GGCCGATATGTTAAAAAGGGCAAT 60.202 41.667 0.87 0.00 41.00 3.56
2704 4317 3.260884 CCAGTAGGGCACTAACTCAAAGA 59.739 47.826 0.00 0.00 34.98 2.52
2715 4328 1.059913 ATAGGCATCCAGTAGGGCAC 58.940 55.000 0.00 0.00 36.80 5.01
2862 4477 5.763698 GTCTAAAACTCCAGGTTAAAGTGCT 59.236 40.000 0.00 0.00 37.12 4.40
2864 4479 7.803279 AAGTCTAAAACTCCAGGTTAAAGTG 57.197 36.000 0.00 0.00 37.17 3.16
2913 4528 4.021632 TCGAAATGATTGGCACCAATTTGA 60.022 37.500 15.82 7.65 45.50 2.69
2976 4591 3.883489 CAGTCACGGTCCATACTAGATGA 59.117 47.826 0.00 0.00 0.00 2.92
2991 4606 6.775939 AAGATATTGATATGCACAGTCACG 57.224 37.500 0.00 0.00 0.00 4.35
3149 4765 8.655935 AATTTTCTACTGTCATGGATCCTTTT 57.344 30.769 14.23 0.00 0.00 2.27
3303 4919 6.365970 TCTCTGCTGAGGAAGTAATTTCTT 57.634 37.500 19.23 0.00 40.58 2.52
3707 5324 9.751542 GCTCAGACTAAATCTAGCACTATTTTA 57.248 33.333 0.00 0.00 35.15 1.52
3708 5325 7.713073 GGCTCAGACTAAATCTAGCACTATTTT 59.287 37.037 0.00 0.00 36.52 1.82
3709 5326 7.213678 GGCTCAGACTAAATCTAGCACTATTT 58.786 38.462 0.00 0.00 36.52 1.40
3710 5327 6.239458 GGGCTCAGACTAAATCTAGCACTATT 60.239 42.308 0.00 0.00 35.88 1.73
3735 5352 5.957798 AGTTTGACATGATACATGCCTTTG 58.042 37.500 0.00 0.00 0.00 2.77
3814 5431 5.067544 GGTTCATGGTAGGAGTAGTACAGAC 59.932 48.000 2.52 0.00 0.00 3.51
3815 5432 5.198965 GGTTCATGGTAGGAGTAGTACAGA 58.801 45.833 2.52 0.00 0.00 3.41
3816 5433 4.954202 TGGTTCATGGTAGGAGTAGTACAG 59.046 45.833 2.52 0.00 0.00 2.74
3817 5434 4.938028 TGGTTCATGGTAGGAGTAGTACA 58.062 43.478 2.52 0.00 0.00 2.90
3818 5435 4.341520 CCTGGTTCATGGTAGGAGTAGTAC 59.658 50.000 0.00 0.00 31.91 2.73
3890 5508 7.565029 TGTTATATCAGATGACCCTGAAGAGAA 59.435 37.037 0.00 0.00 45.22 2.87
3967 5591 2.287644 TGAATAAACCATCGAGCATGCG 59.712 45.455 13.01 0.00 0.00 4.73
4212 5845 9.958180 CTATCTATCTGAACTCTCTAATCCTCA 57.042 37.037 0.00 0.00 0.00 3.86
4265 5898 2.639347 TCCCCTCGTGCATCATGATAAT 59.361 45.455 8.15 0.00 0.00 1.28
4277 5910 2.928396 AACACCCCTCCCCTCGTG 60.928 66.667 0.00 0.00 0.00 4.35
4335 5971 1.205655 CACATGACAGAGGACGTCCAT 59.794 52.381 35.00 21.03 38.89 3.41
4337 5973 0.108615 CCACATGACAGAGGACGTCC 60.109 60.000 27.67 27.67 32.15 4.79
4344 5980 2.124983 CGGCCCCACATGACAGAG 60.125 66.667 0.00 0.00 0.00 3.35
4365 6001 6.127758 TGGTTTCAATCCAACTATGTGCATAC 60.128 38.462 0.00 0.00 31.50 2.39
4378 6014 4.523943 CCTTTCAGATGTGGTTTCAATCCA 59.476 41.667 0.00 0.00 0.00 3.41
4415 6051 9.177608 CCAATTACTTGAAGATCAGGATTTACA 57.822 33.333 0.00 0.00 34.04 2.41
4421 6057 4.788075 TCCCCAATTACTTGAAGATCAGGA 59.212 41.667 0.00 0.00 34.04 3.86
4438 6074 5.732331 ATTGGAACAGATAAGATCCCCAA 57.268 39.130 0.00 0.00 42.39 4.12
4450 6086 4.162131 TGATCAGATCGGAATTGGAACAGA 59.838 41.667 5.91 0.00 42.39 3.41
4579 8677 3.279434 GAAACTCCCAAATGCGAGGTAT 58.721 45.455 0.64 0.00 0.00 2.73
4639 8737 4.153411 AGGTAGAGGGTAAGGATTCATCG 58.847 47.826 0.00 0.00 0.00 3.84
4722 8820 2.202878 TCCGGAGCGCATAGTTGC 60.203 61.111 11.47 0.00 45.78 4.17
4732 8830 4.785453 CAGCCCAACCTCCGGAGC 62.785 72.222 26.87 14.64 0.00 4.70
4794 10292 8.171164 TGTGGTTCATTTTGTTATGATACACA 57.829 30.769 14.43 14.43 42.58 3.72
4811 10309 6.867519 TTCTACTAGAATGGATGTGGTTCA 57.132 37.500 0.00 0.00 0.00 3.18
4832 10330 4.804139 CGGTCATAACACACTCCTACATTC 59.196 45.833 0.00 0.00 0.00 2.67
4840 10338 0.036765 TGCCCGGTCATAACACACTC 60.037 55.000 0.00 0.00 0.00 3.51
4841 10339 0.036388 CTGCCCGGTCATAACACACT 60.036 55.000 0.00 0.00 0.00 3.55
4842 10340 0.036765 TCTGCCCGGTCATAACACAC 60.037 55.000 0.00 0.00 0.00 3.82
4843 10341 0.036765 GTCTGCCCGGTCATAACACA 60.037 55.000 0.00 0.00 0.00 3.72
4844 10342 0.249398 AGTCTGCCCGGTCATAACAC 59.751 55.000 0.00 0.00 0.00 3.32
4845 10343 0.981183 AAGTCTGCCCGGTCATAACA 59.019 50.000 0.00 0.00 0.00 2.41
4846 10344 2.973694 TAAGTCTGCCCGGTCATAAC 57.026 50.000 0.00 0.00 0.00 1.89
4847 10345 2.484770 GCATAAGTCTGCCCGGTCATAA 60.485 50.000 0.00 0.00 36.10 1.90
4848 10346 1.070134 GCATAAGTCTGCCCGGTCATA 59.930 52.381 0.00 0.00 36.10 2.15
4849 10347 0.179045 GCATAAGTCTGCCCGGTCAT 60.179 55.000 0.00 0.00 36.10 3.06
4933 14299 4.112716 TGTTTGTATAACCTCGATGCGA 57.887 40.909 0.00 0.00 0.00 5.10
4934 14300 4.328983 ACTTGTTTGTATAACCTCGATGCG 59.671 41.667 0.00 0.00 0.00 4.73
4935 14301 5.796350 ACTTGTTTGTATAACCTCGATGC 57.204 39.130 0.00 0.00 0.00 3.91
4949 14315 8.450964 TCTCAAAAGAGTCTTACAACTTGTTTG 58.549 33.333 5.65 4.00 41.49 2.93
4990 14356 1.073284 GGAGCCGGGCAATAGGATTTA 59.927 52.381 23.09 0.00 0.00 1.40
5012 14378 1.079621 TTTAGGGTCCGGCTCCTCA 59.920 57.895 16.98 5.81 34.75 3.86
5016 14382 0.688749 TAGGGTTTAGGGTCCGGCTC 60.689 60.000 0.00 0.00 0.00 4.70
5022 14388 1.145598 GCGGCTAGGGTTTAGGGTC 59.854 63.158 0.00 0.00 0.00 4.46
5056 14423 1.148759 GGCGCGATGAAGAAGAGGTC 61.149 60.000 12.10 0.00 0.00 3.85
5057 14424 1.153549 GGCGCGATGAAGAAGAGGT 60.154 57.895 12.10 0.00 0.00 3.85
5110 14477 4.787280 AGGAGGAGGGCTGACGGG 62.787 72.222 0.00 0.00 0.00 5.28
5116 14483 2.633557 TACGGGAAGGAGGAGGGCT 61.634 63.158 0.00 0.00 0.00 5.19
5117 14484 2.042230 TACGGGAAGGAGGAGGGC 60.042 66.667 0.00 0.00 0.00 5.19
5153 14520 1.782140 GTAGGAGCTAGGACCCTACCT 59.218 57.143 14.79 4.06 44.02 3.08
5428 14851 5.047731 GGCAAAGCAAGAATAAGGAGAAGTT 60.048 40.000 0.00 0.00 0.00 2.66
5549 14972 5.818857 ACACGCTTAACTTTGGAGTTCTTTA 59.181 36.000 0.00 0.00 44.75 1.85
5582 15005 1.688735 TCACCCATCCTAGAATCGCTG 59.311 52.381 0.00 0.00 0.00 5.18
5632 15055 2.233271 CACTGGTCTTTCCTGCACATT 58.767 47.619 0.00 0.00 38.49 2.71
5633 15056 1.143684 ACACTGGTCTTTCCTGCACAT 59.856 47.619 0.00 0.00 38.49 3.21
5789 15268 2.032528 CCAGTCCGGCACATGTGT 59.967 61.111 26.01 3.01 0.00 3.72
5811 15290 1.072489 TCCCTTTTGGCACACGTATGA 59.928 47.619 0.00 0.00 39.29 2.15
5989 15470 2.158755 ACCCATCCTAAAATCGCTCCAG 60.159 50.000 0.00 0.00 0.00 3.86
6043 15525 1.702886 CTCTGCTACCGTTCACACTG 58.297 55.000 0.00 0.00 0.00 3.66
6054 15536 0.942962 GATGGCATGTGCTCTGCTAC 59.057 55.000 3.81 0.00 41.70 3.58
6122 15604 4.078537 TGTGTGCTGCATTTATTGTACCT 58.921 39.130 5.27 0.00 0.00 3.08
6169 15651 3.256383 TGCCTCATCTTCATGTGGTTTTG 59.744 43.478 0.00 0.00 43.19 2.44
6278 15760 1.936547 CCTAATCGGTGCTTCAAGCTC 59.063 52.381 11.57 6.96 42.97 4.09
6279 15761 1.555075 TCCTAATCGGTGCTTCAAGCT 59.445 47.619 11.57 0.00 42.97 3.74
6280 15762 1.936547 CTCCTAATCGGTGCTTCAAGC 59.063 52.381 1.04 1.04 42.82 4.01
6281 15763 3.118956 ACTCTCCTAATCGGTGCTTCAAG 60.119 47.826 0.00 0.00 0.00 3.02
6282 15764 2.832129 ACTCTCCTAATCGGTGCTTCAA 59.168 45.455 0.00 0.00 0.00 2.69
6283 15765 2.457598 ACTCTCCTAATCGGTGCTTCA 58.542 47.619 0.00 0.00 0.00 3.02
6284 15766 3.528597 AACTCTCCTAATCGGTGCTTC 57.471 47.619 0.00 0.00 0.00 3.86
6305 15828 9.764363 CAGCAACATCCTATACAACTTAGAATA 57.236 33.333 0.00 0.00 0.00 1.75
6307 15830 7.847096 TCAGCAACATCCTATACAACTTAGAA 58.153 34.615 0.00 0.00 0.00 2.10
6369 15892 7.201530 CCTTGAAGTATACTCATTTCAACCGAC 60.202 40.741 5.70 0.00 35.34 4.79
6383 15906 4.865365 GTCACTGCACTCCTTGAAGTATAC 59.135 45.833 0.00 0.00 43.12 1.47
6404 15927 5.106712 TGACATATTTCCTTTCAACTGCGTC 60.107 40.000 0.00 0.00 0.00 5.19
6406 15929 5.122239 TCTGACATATTTCCTTTCAACTGCG 59.878 40.000 0.00 0.00 0.00 5.18
6496 16025 6.470235 GGAGTTTGATAATGCAAATTCGACAG 59.530 38.462 0.00 0.00 42.16 3.51
6500 16029 5.230726 GCAGGAGTTTGATAATGCAAATTCG 59.769 40.000 0.00 0.00 42.16 3.34
6705 16237 7.905604 ATTTTATCTTCACAACGATGAGTGA 57.094 32.000 0.00 0.00 42.55 3.41
6731 16263 2.736670 ACTTATTAGGGGCTTGCAGG 57.263 50.000 0.00 0.00 0.00 4.85
6796 16328 4.104776 CCAATTGCACGCTAATTTACCAG 58.895 43.478 0.00 0.00 0.00 4.00
6809 16341 7.375053 TCAACTATAAAGAAACCCAATTGCAC 58.625 34.615 0.00 0.00 0.00 4.57
6813 16345 8.815912 AGCATTCAACTATAAAGAAACCCAATT 58.184 29.630 0.00 0.00 0.00 2.32
6816 16348 6.350110 GCAGCATTCAACTATAAAGAAACCCA 60.350 38.462 0.00 0.00 0.00 4.51
6821 16353 5.163622 GGCAGCAGCATTCAACTATAAAGAA 60.164 40.000 2.65 0.00 44.61 2.52
6827 16359 1.747355 GTGGCAGCAGCATTCAACTAT 59.253 47.619 2.65 0.00 44.61 2.12
6828 16360 1.167851 GTGGCAGCAGCATTCAACTA 58.832 50.000 2.65 0.00 44.61 2.24
6829 16361 0.538977 AGTGGCAGCAGCATTCAACT 60.539 50.000 2.65 0.00 44.61 3.16
6893 16426 6.307776 TGGTAGGGTCTTGAGACTGATATAG 58.692 44.000 10.68 0.00 44.20 1.31
7049 16582 6.826741 GGGCAGGAACTAACTAATATTGTCAA 59.173 38.462 0.00 0.00 36.02 3.18
7086 16619 2.094906 TGCAGTAGCGGTAGTACACAAG 60.095 50.000 0.85 0.00 46.23 3.16
7099 16632 3.068881 TGGGGACACTGCAGTAGC 58.931 61.111 21.20 14.11 36.88 3.58
7266 16800 2.301577 TTGCAACGAAACAAAAGGGG 57.698 45.000 0.00 0.00 0.00 4.79
7391 16928 6.382859 TGCCTGTCATTACTTATACAGAAGGA 59.617 38.462 0.00 0.00 41.47 3.36
7401 16938 5.692115 TGGATCTTGCCTGTCATTACTTA 57.308 39.130 0.00 0.00 0.00 2.24
7409 16946 4.303086 CATGATTTGGATCTTGCCTGTC 57.697 45.455 0.00 0.00 32.70 3.51
7493 17059 7.507277 AGATCTATAACTAACAGCCTGACATCA 59.493 37.037 0.00 0.00 0.00 3.07
7515 17088 4.434725 CGTGTTGCAAGATACACACAGATC 60.435 45.833 17.17 0.00 43.69 2.75
7522 17095 5.051641 GCTCTATACGTGTTGCAAGATACAC 60.052 44.000 0.00 4.08 40.89 2.90
7526 17100 4.123497 TGCTCTATACGTGTTGCAAGAT 57.877 40.909 0.00 0.00 0.00 2.40
7534 17108 8.718102 ATTAACAAGATTTGCTCTATACGTGT 57.282 30.769 0.00 0.00 32.41 4.49
7543 17117 9.745323 GCATGTTTTTATTAACAAGATTTGCTC 57.255 29.630 0.00 0.00 41.02 4.26
7575 17149 9.816787 TTTCCTCCCATGTTTTTATTAACTAGT 57.183 29.630 0.00 0.00 0.00 2.57
7578 17152 8.466798 CGATTTCCTCCCATGTTTTTATTAACT 58.533 33.333 0.00 0.00 0.00 2.24
7586 17160 4.580580 GCTATCGATTTCCTCCCATGTTTT 59.419 41.667 1.71 0.00 0.00 2.43
7597 17171 5.127693 TCTTCAGCTAGCTATCGATTTCC 57.872 43.478 18.86 0.00 0.00 3.13
7598 17172 4.621034 GCTCTTCAGCTAGCTATCGATTTC 59.379 45.833 18.86 0.00 43.09 2.17
7635 17209 8.768957 TGAAAACATGAACATTGAAACTGAAA 57.231 26.923 0.00 0.00 0.00 2.69
7673 17297 0.111089 CGCACTTTGTGAAGACGAGC 60.111 55.000 1.52 0.00 37.82 5.03
7829 17453 4.463891 TGAGACATGTGCAGAAGTATCTCA 59.536 41.667 13.84 13.19 39.12 3.27
7859 17483 0.804989 AGTGCTTGCGCCAATAGTTC 59.195 50.000 4.18 0.00 34.43 3.01
7877 17501 6.708054 ACTCTTGTTGTATTTCCTCTTGTCAG 59.292 38.462 0.00 0.00 0.00 3.51
7879 17503 7.332182 CCTACTCTTGTTGTATTTCCTCTTGTC 59.668 40.741 0.00 0.00 0.00 3.18
7881 17505 7.332182 GTCCTACTCTTGTTGTATTTCCTCTTG 59.668 40.741 0.00 0.00 0.00 3.02
7883 17507 6.726764 AGTCCTACTCTTGTTGTATTTCCTCT 59.273 38.462 0.00 0.00 0.00 3.69
7890 17514 7.062749 TGTTTCAGTCCTACTCTTGTTGTAT 57.937 36.000 0.00 0.00 0.00 2.29
7892 17516 5.353394 TGTTTCAGTCCTACTCTTGTTGT 57.647 39.130 0.00 0.00 0.00 3.32
7893 17517 6.867662 ATTGTTTCAGTCCTACTCTTGTTG 57.132 37.500 0.00 0.00 0.00 3.33
7912 17536 2.491693 CCTGAATGCGGTTTGGTATTGT 59.508 45.455 0.00 0.00 0.00 2.71
7943 17567 1.489649 AGATCCTGATTGCAGAGGGTG 59.510 52.381 8.26 0.00 45.17 4.61
7944 17568 1.890552 AGATCCTGATTGCAGAGGGT 58.109 50.000 8.26 1.89 45.17 4.34
7949 17598 2.995283 TGGTGAAGATCCTGATTGCAG 58.005 47.619 0.00 0.00 41.93 4.41
7962 17611 0.609131 AGGCGGATTGGTTGGTGAAG 60.609 55.000 0.00 0.00 0.00 3.02
8046 17695 0.810031 CGGCTTGTCTGTATTCCCGG 60.810 60.000 0.00 0.00 0.00 5.73
8047 17696 1.429148 GCGGCTTGTCTGTATTCCCG 61.429 60.000 0.00 0.00 37.43 5.14
8048 17697 0.107654 AGCGGCTTGTCTGTATTCCC 60.108 55.000 0.00 0.00 0.00 3.97
8049 17698 1.009829 CAGCGGCTTGTCTGTATTCC 58.990 55.000 0.00 0.00 0.00 3.01
8078 17727 8.056407 ACAAATATAGAAGAAGAAAACAGGGC 57.944 34.615 0.00 0.00 0.00 5.19
8088 17737 9.798994 ACGGTTGTAGTACAAATATAGAAGAAG 57.201 33.333 17.16 1.87 40.15 2.85
8106 17755 0.523072 GTCGAGGCTGTACGGTTGTA 59.477 55.000 3.10 0.00 0.00 2.41
8107 17756 1.288127 GTCGAGGCTGTACGGTTGT 59.712 57.895 3.10 0.00 0.00 3.32
8108 17757 1.800315 CGTCGAGGCTGTACGGTTG 60.800 63.158 9.70 0.00 33.13 3.77
8119 17768 6.698281 AGGTAACAAAGACAAAACGTCGAGG 61.698 44.000 3.03 3.03 45.55 4.63
8123 17772 5.963586 CAGAAGGTAACAAAGACAAAACGTC 59.036 40.000 0.00 0.00 42.39 4.34
8170 17819 4.868734 CACGGGAGGTTCTTTAATCTACAC 59.131 45.833 0.00 0.00 26.66 2.90
8185 17834 0.824109 TGATTAGCTGACACGGGAGG 59.176 55.000 0.00 0.00 0.00 4.30
8228 17877 4.679373 TGCAAGGGAGCAAATAACAAAA 57.321 36.364 0.00 0.00 42.46 2.44
8258 17907 1.607467 ACCTCCTGCCATTTGTGCC 60.607 57.895 0.00 0.00 0.00 5.01
8259 17908 1.588082 CACCTCCTGCCATTTGTGC 59.412 57.895 0.00 0.00 0.00 4.57
8438 18091 0.543749 AGTTATCTGACCAGGGCTGC 59.456 55.000 0.00 0.00 0.00 5.25
8529 18182 2.080654 AGGCCTAACAAACCAAGCAA 57.919 45.000 1.29 0.00 0.00 3.91
8570 18223 1.470098 CAAACAGGTGCTGATACTGCC 59.530 52.381 0.00 0.00 35.70 4.85
8663 18316 1.371558 GTCGGGACTGGAAGCAAGT 59.628 57.895 0.00 0.00 37.60 3.16
8664 18317 1.738099 CGTCGGGACTGGAAGCAAG 60.738 63.158 0.00 0.00 37.60 4.01
8665 18318 1.750341 TTCGTCGGGACTGGAAGCAA 61.750 55.000 0.00 0.00 37.60 3.91
8666 18319 2.204461 TTCGTCGGGACTGGAAGCA 61.204 57.895 0.00 0.00 37.60 3.91
8703 18356 2.612115 AGCTGTGGGGAGGAAGGG 60.612 66.667 0.00 0.00 0.00 3.95
8722 18376 0.401738 TCAGGAAAAGAGGTGCCCAG 59.598 55.000 0.00 0.00 0.00 4.45
8728 18382 3.412386 CGGTTTCATCAGGAAAAGAGGT 58.588 45.455 0.00 0.00 46.53 3.85
8730 18384 3.412386 ACCGGTTTCATCAGGAAAAGAG 58.588 45.455 0.00 0.00 46.53 2.85
8732 18386 3.146066 TGACCGGTTTCATCAGGAAAAG 58.854 45.455 9.42 0.00 46.53 2.27
8734 18388 2.940994 TGACCGGTTTCATCAGGAAA 57.059 45.000 9.42 0.00 43.07 3.13
8849 20576 2.646719 GCGCATACATGGCATGGG 59.353 61.111 29.49 19.31 38.86 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.