Multiple sequence alignment - TraesCS3A01G280900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G280900 chr3A 100.000 4315 0 0 459 4773 509866797 509862483 0.000000e+00 7969.0
1 TraesCS3A01G280900 chr3A 100.000 214 0 0 1 214 509867255 509867042 3.460000e-106 396.0
2 TraesCS3A01G280900 chr3A 99.355 155 1 0 60 214 509866797 509866643 1.010000e-71 281.0
3 TraesCS3A01G280900 chr3A 99.355 155 1 0 459 613 509867196 509867042 1.010000e-71 281.0
4 TraesCS3A01G280900 chr3A 89.744 156 15 1 1851 2006 383691084 383690930 1.050000e-46 198.0
5 TraesCS3A01G280900 chr3D 94.837 3370 100 20 459 3807 388795259 388791943 0.000000e+00 5192.0
6 TraesCS3A01G280900 chr3D 94.017 468 21 5 3746 4207 388791949 388791483 0.000000e+00 702.0
7 TraesCS3A01G280900 chr3D 100.000 214 0 0 1 214 388795318 388795105 3.460000e-106 396.0
8 TraesCS3A01G280900 chr3D 90.476 294 8 7 4497 4773 388791231 388790941 2.100000e-98 370.0
9 TraesCS3A01G280900 chr3D 95.082 61 3 0 4424 4484 558285081 558285141 3.930000e-16 97.1
10 TraesCS3A01G280900 chr3B 95.880 2500 72 9 708 3198 506197264 506194787 0.000000e+00 4017.0
11 TraesCS3A01G280900 chr3B 88.504 1183 97 21 3229 4390 506194663 506193499 0.000000e+00 1395.0
12 TraesCS3A01G280900 chr3B 99.533 214 1 0 1 214 506197796 506197583 1.610000e-104 390.0
13 TraesCS3A01G280900 chr3B 98.830 171 2 0 459 629 506197737 506197567 6.000000e-79 305.0
14 TraesCS3A01G280900 chr3B 78.689 305 18 19 4505 4773 506193500 506193207 4.940000e-35 159.0
15 TraesCS3A01G280900 chr1D 93.293 164 9 2 1841 2003 156133501 156133339 1.720000e-59 241.0
16 TraesCS3A01G280900 chr1D 83.004 253 32 11 4113 4360 403274887 403275133 8.040000e-53 219.0
17 TraesCS3A01G280900 chr2A 94.156 154 9 0 1850 2003 141506471 141506318 7.990000e-58 235.0
18 TraesCS3A01G280900 chr4B 94.118 153 9 0 1851 2003 106227409 106227561 2.870000e-57 233.0
19 TraesCS3A01G280900 chr4B 92.857 42 3 0 4426 4467 5781230 5781271 1.430000e-05 62.1
20 TraesCS3A01G280900 chr7D 92.547 161 11 1 1847 2007 447053659 447053500 3.720000e-56 230.0
21 TraesCS3A01G280900 chr7D 89.714 175 16 2 1836 2009 535326646 535326819 6.220000e-54 222.0
22 TraesCS3A01G280900 chr7D 79.771 262 42 9 4114 4369 112423972 112424228 3.800000e-41 180.0
23 TraesCS3A01G280900 chr6D 92.903 155 11 0 1849 2003 256728448 256728602 4.810000e-55 226.0
24 TraesCS3A01G280900 chr6D 92.903 155 11 0 1849 2003 256729245 256729399 4.810000e-55 226.0
25 TraesCS3A01G280900 chr6A 92.903 155 11 0 1850 2004 411770252 411770406 4.810000e-55 226.0
26 TraesCS3A01G280900 chr1A 82.377 244 33 10 4113 4351 498534245 498534483 2.250000e-48 204.0
27 TraesCS3A01G280900 chr4A 81.224 245 35 8 4114 4354 628630871 628630634 2.270000e-43 187.0
28 TraesCS3A01G280900 chr7A 79.771 262 42 9 4114 4369 117783761 117784017 3.800000e-41 180.0
29 TraesCS3A01G280900 chr5B 80.093 216 37 5 4152 4366 632148920 632149130 6.400000e-34 156.0
30 TraesCS3A01G280900 chr4D 77.612 268 52 8 4114 4375 502418011 502417746 6.400000e-34 156.0
31 TraesCS3A01G280900 chr5D 77.917 240 39 12 4137 4371 539792222 539792452 2.320000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G280900 chr3A 509862483 509867255 4772 True 2231.75 7969 99.6775 1 4773 4 chr3A.!!$R2 4772
1 TraesCS3A01G280900 chr3D 388790941 388795318 4377 True 1665.00 5192 94.8325 1 4773 4 chr3D.!!$R1 4772
2 TraesCS3A01G280900 chr3B 506193207 506197796 4589 True 1253.20 4017 92.2872 1 4773 5 chr3B.!!$R1 4772
3 TraesCS3A01G280900 chr6D 256728448 256729399 951 False 226.00 226 92.9030 1849 2003 2 chr6D.!!$F1 154

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
643 644 0.030092 TCTTACATGGGGAGGGAGGG 60.030 60.000 0.00 0.00 0.00 4.30 F
1134 1359 0.868406 GTGCTGCTGTTACTCGCTTT 59.132 50.000 0.00 0.00 0.00 3.51 F
2108 2362 0.879765 AGTCTCGTCTGTACCAACGG 59.120 55.000 14.72 7.79 39.31 4.44 F
2381 2636 1.080093 TGACTCATTCCCACGCGTC 60.080 57.895 9.86 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2366 2621 0.172578 TACAGACGCGTGGGAATGAG 59.827 55.000 20.70 0.0 0.00 2.90 R
2923 3178 1.278985 CTGGGCAAGATGTGTACCTGA 59.721 52.381 0.00 0.0 31.50 3.86 R
3289 3642 0.320771 CCCGGATACACCTGCATAGC 60.321 60.000 0.73 0.0 36.31 2.97 R
3906 4320 0.390124 AAGGCAAGCAACACACCATG 59.610 50.000 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 201 2.754946 TTACCTTTCAGTGGCCGTAG 57.245 50.000 0.00 0.00 0.00 3.51
201 202 1.636148 TACCTTTCAGTGGCCGTAGT 58.364 50.000 0.00 0.00 0.00 2.73
202 203 0.763035 ACCTTTCAGTGGCCGTAGTT 59.237 50.000 0.00 0.00 0.00 2.24
203 204 1.156736 CCTTTCAGTGGCCGTAGTTG 58.843 55.000 0.00 0.00 0.00 3.16
204 205 1.270625 CCTTTCAGTGGCCGTAGTTGA 60.271 52.381 0.00 0.00 0.00 3.18
205 206 2.615493 CCTTTCAGTGGCCGTAGTTGAT 60.615 50.000 0.00 0.00 0.00 2.57
206 207 2.380084 TTCAGTGGCCGTAGTTGATC 57.620 50.000 0.00 0.00 0.00 2.92
207 208 1.557099 TCAGTGGCCGTAGTTGATCT 58.443 50.000 0.00 0.00 0.00 2.75
208 209 1.476891 TCAGTGGCCGTAGTTGATCTC 59.523 52.381 0.00 0.00 0.00 2.75
209 210 1.204704 CAGTGGCCGTAGTTGATCTCA 59.795 52.381 0.00 0.00 0.00 3.27
210 211 2.111384 AGTGGCCGTAGTTGATCTCAT 58.889 47.619 0.00 0.00 0.00 2.90
211 212 2.501723 AGTGGCCGTAGTTGATCTCATT 59.498 45.455 0.00 0.00 0.00 2.57
212 213 2.866762 GTGGCCGTAGTTGATCTCATTC 59.133 50.000 0.00 0.00 0.00 2.67
213 214 2.499693 TGGCCGTAGTTGATCTCATTCA 59.500 45.455 0.00 0.00 0.00 2.57
475 476 3.243128 CGCGTCATGCACAGTTCA 58.757 55.556 0.00 0.00 46.97 3.18
476 477 1.131218 CGCGTCATGCACAGTTCAG 59.869 57.895 0.00 0.00 46.97 3.02
477 478 1.560004 CGCGTCATGCACAGTTCAGT 61.560 55.000 0.00 0.00 46.97 3.41
478 479 0.110509 GCGTCATGCACAGTTCAGTG 60.111 55.000 0.00 0.00 45.45 3.66
479 480 1.501169 CGTCATGCACAGTTCAGTGA 58.499 50.000 0.00 0.00 42.05 3.41
480 481 2.071540 CGTCATGCACAGTTCAGTGAT 58.928 47.619 0.00 0.00 42.05 3.06
481 482 2.481568 CGTCATGCACAGTTCAGTGATT 59.518 45.455 0.00 0.00 42.05 2.57
482 483 3.679502 CGTCATGCACAGTTCAGTGATTA 59.320 43.478 0.00 0.00 42.05 1.75
483 484 4.152223 CGTCATGCACAGTTCAGTGATTAA 59.848 41.667 0.00 0.00 42.05 1.40
484 485 5.334028 CGTCATGCACAGTTCAGTGATTAAA 60.334 40.000 0.00 0.00 42.05 1.52
485 486 5.853282 GTCATGCACAGTTCAGTGATTAAAC 59.147 40.000 0.00 0.00 42.05 2.01
486 487 5.764686 TCATGCACAGTTCAGTGATTAAACT 59.235 36.000 0.00 0.00 42.05 2.66
487 488 6.934083 TCATGCACAGTTCAGTGATTAAACTA 59.066 34.615 0.00 0.00 42.05 2.24
488 489 7.607607 TCATGCACAGTTCAGTGATTAAACTAT 59.392 33.333 0.00 0.00 42.05 2.12
489 490 7.132694 TGCACAGTTCAGTGATTAAACTATG 57.867 36.000 0.00 0.00 42.05 2.23
490 491 6.024049 GCACAGTTCAGTGATTAAACTATGC 58.976 40.000 9.52 9.52 43.57 3.14
491 492 6.546395 CACAGTTCAGTGATTAAACTATGCC 58.454 40.000 0.00 0.00 42.05 4.40
492 493 6.149308 CACAGTTCAGTGATTAAACTATGCCA 59.851 38.462 0.00 0.00 42.05 4.92
493 494 6.149474 ACAGTTCAGTGATTAAACTATGCCAC 59.851 38.462 0.00 0.00 32.20 5.01
494 495 6.372659 CAGTTCAGTGATTAAACTATGCCACT 59.627 38.462 0.00 0.00 35.51 4.00
495 496 7.549134 CAGTTCAGTGATTAAACTATGCCACTA 59.451 37.037 0.00 0.00 34.01 2.74
496 497 7.549488 AGTTCAGTGATTAAACTATGCCACTAC 59.451 37.037 0.00 0.00 34.01 2.73
497 498 7.182817 TCAGTGATTAAACTATGCCACTACT 57.817 36.000 0.00 0.00 34.01 2.57
498 499 8.301252 TCAGTGATTAAACTATGCCACTACTA 57.699 34.615 0.00 0.00 34.01 1.82
499 500 8.755028 TCAGTGATTAAACTATGCCACTACTAA 58.245 33.333 0.00 0.00 34.01 2.24
500 501 9.547753 CAGTGATTAAACTATGCCACTACTAAT 57.452 33.333 0.00 0.00 34.01 1.73
507 508 6.667558 ACTATGCCACTACTAATAGGTTCC 57.332 41.667 0.00 0.00 32.08 3.62
508 509 4.602340 ATGCCACTACTAATAGGTTCCG 57.398 45.455 0.00 0.00 32.08 4.30
509 510 3.634504 TGCCACTACTAATAGGTTCCGA 58.365 45.455 0.00 0.00 32.08 4.55
510 511 4.220724 TGCCACTACTAATAGGTTCCGAT 58.779 43.478 0.00 0.00 32.08 4.18
511 512 4.038763 TGCCACTACTAATAGGTTCCGATG 59.961 45.833 0.00 0.00 32.08 3.84
512 513 4.038883 GCCACTACTAATAGGTTCCGATGT 59.961 45.833 0.00 0.00 32.08 3.06
513 514 5.770417 CCACTACTAATAGGTTCCGATGTC 58.230 45.833 0.00 0.00 32.08 3.06
514 515 5.535406 CCACTACTAATAGGTTCCGATGTCT 59.465 44.000 0.00 0.00 32.08 3.41
515 516 6.294065 CCACTACTAATAGGTTCCGATGTCTC 60.294 46.154 0.00 0.00 32.08 3.36
516 517 6.262496 CACTACTAATAGGTTCCGATGTCTCA 59.738 42.308 0.00 0.00 32.08 3.27
517 518 7.005296 ACTACTAATAGGTTCCGATGTCTCAT 58.995 38.462 0.00 0.00 32.08 2.90
518 519 6.090483 ACTAATAGGTTCCGATGTCTCATG 57.910 41.667 0.00 0.00 0.00 3.07
519 520 2.890808 TAGGTTCCGATGTCTCATGC 57.109 50.000 0.00 0.00 0.00 4.06
520 521 0.904649 AGGTTCCGATGTCTCATGCA 59.095 50.000 0.00 0.00 0.00 3.96
521 522 1.487976 AGGTTCCGATGTCTCATGCAT 59.512 47.619 0.00 0.00 0.00 3.96
522 523 1.600957 GGTTCCGATGTCTCATGCATG 59.399 52.381 21.07 21.07 0.00 4.06
523 524 1.003116 GTTCCGATGTCTCATGCATGC 60.003 52.381 22.25 11.82 0.00 4.06
524 525 0.466963 TCCGATGTCTCATGCATGCT 59.533 50.000 22.25 1.07 0.00 3.79
525 526 0.866427 CCGATGTCTCATGCATGCTC 59.134 55.000 22.25 13.90 0.00 4.26
526 527 1.540580 CCGATGTCTCATGCATGCTCT 60.541 52.381 22.25 3.10 0.00 4.09
527 528 1.793532 CGATGTCTCATGCATGCTCTC 59.206 52.381 22.25 11.96 0.00 3.20
528 529 2.546162 CGATGTCTCATGCATGCTCTCT 60.546 50.000 22.25 6.23 0.00 3.10
529 530 3.468770 GATGTCTCATGCATGCTCTCTT 58.531 45.455 22.25 9.75 0.00 2.85
530 531 3.345508 TGTCTCATGCATGCTCTCTTT 57.654 42.857 22.25 0.00 0.00 2.52
531 532 3.682696 TGTCTCATGCATGCTCTCTTTT 58.317 40.909 22.25 0.00 0.00 2.27
532 533 4.835678 TGTCTCATGCATGCTCTCTTTTA 58.164 39.130 22.25 0.10 0.00 1.52
533 534 5.434408 TGTCTCATGCATGCTCTCTTTTAT 58.566 37.500 22.25 0.00 0.00 1.40
534 535 5.884232 TGTCTCATGCATGCTCTCTTTTATT 59.116 36.000 22.25 0.00 0.00 1.40
535 536 6.037940 TGTCTCATGCATGCTCTCTTTTATTC 59.962 38.462 22.25 0.00 0.00 1.75
536 537 6.260493 GTCTCATGCATGCTCTCTTTTATTCT 59.740 38.462 22.25 0.00 0.00 2.40
537 538 6.260271 TCTCATGCATGCTCTCTTTTATTCTG 59.740 38.462 22.25 0.00 0.00 3.02
538 539 6.117488 TCATGCATGCTCTCTTTTATTCTGA 58.883 36.000 22.25 0.00 0.00 3.27
539 540 6.771267 TCATGCATGCTCTCTTTTATTCTGAT 59.229 34.615 22.25 0.00 0.00 2.90
540 541 6.615264 TGCATGCTCTCTTTTATTCTGATC 57.385 37.500 20.33 0.00 0.00 2.92
541 542 6.354938 TGCATGCTCTCTTTTATTCTGATCT 58.645 36.000 20.33 0.00 0.00 2.75
542 543 6.827251 TGCATGCTCTCTTTTATTCTGATCTT 59.173 34.615 20.33 0.00 0.00 2.40
543 544 7.133513 GCATGCTCTCTTTTATTCTGATCTTG 58.866 38.462 11.37 0.00 0.00 3.02
544 545 6.674694 TGCTCTCTTTTATTCTGATCTTGC 57.325 37.500 0.00 0.00 0.00 4.01
545 546 5.587844 TGCTCTCTTTTATTCTGATCTTGCC 59.412 40.000 0.00 0.00 0.00 4.52
546 547 5.587844 GCTCTCTTTTATTCTGATCTTGCCA 59.412 40.000 0.00 0.00 0.00 4.92
547 548 6.458070 GCTCTCTTTTATTCTGATCTTGCCAC 60.458 42.308 0.00 0.00 0.00 5.01
548 549 6.475504 TCTCTTTTATTCTGATCTTGCCACA 58.524 36.000 0.00 0.00 0.00 4.17
549 550 6.372659 TCTCTTTTATTCTGATCTTGCCACAC 59.627 38.462 0.00 0.00 0.00 3.82
550 551 4.944962 TTTATTCTGATCTTGCCACACG 57.055 40.909 0.00 0.00 0.00 4.49
551 552 2.479566 ATTCTGATCTTGCCACACGT 57.520 45.000 0.00 0.00 0.00 4.49
552 553 1.795768 TTCTGATCTTGCCACACGTC 58.204 50.000 0.00 0.00 0.00 4.34
553 554 0.037326 TCTGATCTTGCCACACGTCC 60.037 55.000 0.00 0.00 0.00 4.79
554 555 1.354337 CTGATCTTGCCACACGTCCG 61.354 60.000 0.00 0.00 0.00 4.79
555 556 2.740714 GATCTTGCCACACGTCCGC 61.741 63.158 0.00 0.00 0.00 5.54
556 557 3.240134 ATCTTGCCACACGTCCGCT 62.240 57.895 0.00 0.00 0.00 5.52
557 558 3.716006 CTTGCCACACGTCCGCTG 61.716 66.667 0.00 0.00 0.00 5.18
558 559 4.228567 TTGCCACACGTCCGCTGA 62.229 61.111 0.00 0.00 0.00 4.26
559 560 4.662961 TGCCACACGTCCGCTGAG 62.663 66.667 0.00 0.00 0.00 3.35
560 561 4.664677 GCCACACGTCCGCTGAGT 62.665 66.667 0.00 0.00 0.00 3.41
561 562 2.734723 CCACACGTCCGCTGAGTG 60.735 66.667 0.00 6.30 41.28 3.51
563 564 1.591594 CACACGTCCGCTGAGTGTT 60.592 57.895 9.47 0.00 45.60 3.32
564 565 1.299926 ACACGTCCGCTGAGTGTTC 60.300 57.895 7.28 0.00 45.60 3.18
565 566 1.299850 CACGTCCGCTGAGTGTTCA 60.300 57.895 0.00 0.00 0.00 3.18
581 582 9.877178 CTGAGTGTTCAGGTTACTTTCTATATT 57.123 33.333 0.00 0.00 45.79 1.28
594 595 9.609346 TTACTTTCTATATTACCTTTCAGTGGC 57.391 33.333 0.00 0.00 0.00 5.01
595 596 7.054751 ACTTTCTATATTACCTTTCAGTGGCC 58.945 38.462 0.00 0.00 0.00 5.36
596 597 5.209818 TCTATATTACCTTTCAGTGGCCG 57.790 43.478 0.00 0.00 0.00 6.13
597 598 3.926058 ATATTACCTTTCAGTGGCCGT 57.074 42.857 0.00 0.00 0.00 5.68
598 599 5.834742 TCTATATTACCTTTCAGTGGCCGTA 59.165 40.000 0.00 0.00 0.00 4.02
608 609 0.456221 AGTGGCCGTAGTTGATCTCG 59.544 55.000 0.00 0.00 0.00 4.04
624 625 7.173907 AGTTGATCTCGTTCAAAATCATGAGTT 59.826 33.333 1.80 1.80 37.36 3.01
641 642 2.436173 GAGTTCTTACATGGGGAGGGAG 59.564 54.545 0.00 0.00 0.00 4.30
642 643 1.490910 GTTCTTACATGGGGAGGGAGG 59.509 57.143 0.00 0.00 0.00 4.30
643 644 0.030092 TCTTACATGGGGAGGGAGGG 60.030 60.000 0.00 0.00 0.00 4.30
644 645 1.005556 TTACATGGGGAGGGAGGGG 59.994 63.158 0.00 0.00 0.00 4.79
645 646 2.577421 TTACATGGGGAGGGAGGGGG 62.577 65.000 0.00 0.00 0.00 5.40
705 706 1.683943 GGCATGCATCTAAAGCTGGA 58.316 50.000 21.36 0.00 0.00 3.86
802 1027 4.008074 TCAACTTGTCTAGCAAAGAGGG 57.992 45.455 10.24 0.00 36.53 4.30
1115 1340 1.077858 GCAGGGAGAGGAGCAAAGG 60.078 63.158 0.00 0.00 0.00 3.11
1133 1358 0.951040 GGTGCTGCTGTTACTCGCTT 60.951 55.000 0.00 0.00 0.00 4.68
1134 1359 0.868406 GTGCTGCTGTTACTCGCTTT 59.132 50.000 0.00 0.00 0.00 3.51
1272 1497 1.003464 TGCATAGCTTCTCTGTGGCAA 59.997 47.619 0.00 0.00 34.83 4.52
1407 1632 2.015736 ACTTGGAGAAGTATGCTGCG 57.984 50.000 0.00 0.00 40.85 5.18
1427 1652 1.450312 GGTTCGGCATCTGTCCCAG 60.450 63.158 0.00 0.00 0.00 4.45
1428 1653 2.109126 GTTCGGCATCTGTCCCAGC 61.109 63.158 0.00 0.00 0.00 4.85
1452 1677 2.563798 CCATGCGGTGGTTTGTGCT 61.564 57.895 0.00 0.00 43.44 4.40
1491 1716 1.138859 CTGTTATGGCGGGTGAGATCA 59.861 52.381 0.00 0.00 0.00 2.92
1505 1730 4.065088 GTGAGATCACAACTTACAGGCAA 58.935 43.478 8.09 0.00 45.75 4.52
1509 1734 6.017400 AGATCACAACTTACAGGCAAAATG 57.983 37.500 0.00 0.00 0.00 2.32
1512 1737 4.278170 TCACAACTTACAGGCAAAATGGAG 59.722 41.667 0.00 0.00 0.00 3.86
1525 1750 1.290134 AATGGAGGAGGAGGTGGAAC 58.710 55.000 0.00 0.00 0.00 3.62
1781 2009 7.222000 CTGTAAGTGACTTTCTTCTACTCCT 57.778 40.000 1.97 0.00 0.00 3.69
1782 2010 7.216973 TGTAAGTGACTTTCTTCTACTCCTC 57.783 40.000 1.97 0.00 0.00 3.71
1783 2011 7.005296 TGTAAGTGACTTTCTTCTACTCCTCT 58.995 38.462 1.97 0.00 0.00 3.69
1958 2186 3.777465 TTCAGTCTGTATGTAGTCCGC 57.223 47.619 0.00 0.00 0.00 5.54
1994 2222 9.004717 TCCAAAACATCTTATATTTGTGAACGA 57.995 29.630 0.00 0.00 32.29 3.85
2010 2238 5.186215 TGTGAACGAAGGGAGTATATGTTGA 59.814 40.000 0.00 0.00 0.00 3.18
2088 2334 5.487845 AGGTTATACTTGTTAAGGAGGTGCT 59.512 40.000 0.00 0.00 0.00 4.40
2108 2362 0.879765 AGTCTCGTCTGTACCAACGG 59.120 55.000 14.72 7.79 39.31 4.44
2274 2529 3.882888 TGTGCAAAGTTCAGGGTTAAGAG 59.117 43.478 0.00 0.00 0.00 2.85
2381 2636 1.080093 TGACTCATTCCCACGCGTC 60.080 57.895 9.86 0.00 0.00 5.19
2395 2650 1.951602 ACGCGTCTGTACCTGCATATA 59.048 47.619 5.58 0.00 0.00 0.86
2624 2879 7.013369 ACAAAATGACTTGAGAACCTACCTTTC 59.987 37.037 0.00 0.00 0.00 2.62
2803 3058 1.194772 GTCGTGTTGCTTCTTGTAGCC 59.805 52.381 0.00 0.00 40.49 3.93
2851 3106 9.921637 AAGAGAAATTTGTGCCGATTAATTTTA 57.078 25.926 0.00 0.00 32.14 1.52
2881 3136 6.311935 CCAATCATTAAGTCCAAATGTTGCAG 59.688 38.462 0.00 0.00 36.07 4.41
2883 3138 6.403866 TCATTAAGTCCAAATGTTGCAGTT 57.596 33.333 0.00 0.00 36.07 3.16
2923 3178 8.186821 GCTAGCTAAGATTTTGTTCATCATTGT 58.813 33.333 7.70 0.00 0.00 2.71
2984 3239 1.331214 CTTTGGGCTGTCAATGTGGT 58.669 50.000 0.00 0.00 0.00 4.16
3004 3264 1.429930 TGCTCAAGTGGTTCCCAGTA 58.570 50.000 0.00 0.00 35.94 2.74
3240 3593 4.323569 TGTTGAGAGAGTCTATCCACCT 57.676 45.455 14.46 0.00 0.00 4.00
3255 3608 2.501723 TCCACCTGTCTCTGCCTTAATC 59.498 50.000 0.00 0.00 0.00 1.75
3257 3610 3.529533 CACCTGTCTCTGCCTTAATCTG 58.470 50.000 0.00 0.00 0.00 2.90
3278 3631 4.645535 TGAGTACTGAGCTGCAATTTCTT 58.354 39.130 0.00 0.00 0.00 2.52
3289 3642 4.387862 GCTGCAATTTCTTCATTGGTTGAG 59.612 41.667 0.00 0.00 35.27 3.02
3329 3682 4.889409 GGGCATCAAGAAAATATCAGGACA 59.111 41.667 0.00 0.00 0.00 4.02
3339 3692 7.918076 AGAAAATATCAGGACAACAGGTAGAA 58.082 34.615 0.00 0.00 0.00 2.10
3565 3918 1.547820 TGCGTGCTCTTCTCTGAATCT 59.452 47.619 0.00 0.00 0.00 2.40
3567 3920 3.193479 TGCGTGCTCTTCTCTGAATCTTA 59.807 43.478 0.00 0.00 0.00 2.10
3659 4012 0.328258 AAACGGATGGAAGGGTGAGG 59.672 55.000 0.00 0.00 0.00 3.86
3727 4080 1.202770 TCAGTCGATGCGAGGAGGATA 60.203 52.381 0.00 0.00 36.23 2.59
3906 4320 2.568090 CATGTGGTTGAAGCGGCC 59.432 61.111 0.00 0.00 0.00 6.13
3910 4324 2.676121 TGGTTGAAGCGGCCATGG 60.676 61.111 7.63 7.63 0.00 3.66
3927 4341 1.592400 GGTGTGTTGCTTGCCTTGC 60.592 57.895 0.00 0.00 0.00 4.01
3942 4356 3.450817 TGCCTTGCTAGTGCTTGTATAGA 59.549 43.478 9.24 0.00 40.48 1.98
4112 4538 5.750352 TTGGTTTTCCCTATACGTCTCTT 57.250 39.130 0.00 0.00 39.73 2.85
4261 4861 9.970553 ATGATGCATCTAATGATATAGTTTGGT 57.029 29.630 26.32 0.00 0.00 3.67
4307 4907 4.411256 TCCTACAAACTCGACCAAACTT 57.589 40.909 0.00 0.00 0.00 2.66
4331 4942 7.820044 TGCGAAGTTTGACTTTAAACAAATT 57.180 28.000 7.11 1.75 38.80 1.82
4332 4943 8.245701 TGCGAAGTTTGACTTTAAACAAATTT 57.754 26.923 10.06 10.06 38.80 1.82
4391 5004 5.895636 ATATTTCCTTGTGCATCAAACGA 57.104 34.783 0.00 0.00 35.48 3.85
4392 5005 3.347958 TTTCCTTGTGCATCAAACGAC 57.652 42.857 0.00 0.00 35.48 4.34
4394 5007 1.202758 TCCTTGTGCATCAAACGACCT 60.203 47.619 0.00 0.00 35.48 3.85
4395 5008 1.608590 CCTTGTGCATCAAACGACCTT 59.391 47.619 0.00 0.00 35.48 3.50
4396 5009 2.350772 CCTTGTGCATCAAACGACCTTC 60.351 50.000 0.00 0.00 35.48 3.46
4398 5011 0.165944 GTGCATCAAACGACCTTCCG 59.834 55.000 0.00 0.00 0.00 4.30
4399 5012 1.134694 GCATCAAACGACCTTCCGC 59.865 57.895 0.00 0.00 0.00 5.54
4400 5013 1.794222 CATCAAACGACCTTCCGCC 59.206 57.895 0.00 0.00 0.00 6.13
4401 5014 1.740296 ATCAAACGACCTTCCGCCG 60.740 57.895 0.00 0.00 0.00 6.46
4402 5015 3.419759 CAAACGACCTTCCGCCGG 61.420 66.667 0.00 0.00 0.00 6.13
4403 5016 3.932483 AAACGACCTTCCGCCGGT 61.932 61.111 1.63 0.00 37.50 5.28
4404 5017 3.465258 AAACGACCTTCCGCCGGTT 62.465 57.895 1.63 0.00 34.19 4.44
4405 5018 3.871248 AACGACCTTCCGCCGGTTC 62.871 63.158 1.63 0.00 34.19 3.62
4406 5019 4.065281 CGACCTTCCGCCGGTTCT 62.065 66.667 1.63 0.00 34.19 3.01
4407 5020 2.125633 GACCTTCCGCCGGTTCTC 60.126 66.667 1.63 0.00 34.19 2.87
4408 5021 2.920912 ACCTTCCGCCGGTTCTCA 60.921 61.111 1.63 0.00 0.00 3.27
4409 5022 2.125512 CCTTCCGCCGGTTCTCAG 60.126 66.667 1.63 0.00 0.00 3.35
4410 5023 2.815647 CTTCCGCCGGTTCTCAGC 60.816 66.667 1.63 0.00 0.00 4.26
4418 5031 4.683432 GGTTCTCAGCGAGCTTGT 57.317 55.556 2.14 0.00 0.00 3.16
4419 5032 2.919971 GGTTCTCAGCGAGCTTGTT 58.080 52.632 2.14 0.00 0.00 2.83
4420 5033 0.793250 GGTTCTCAGCGAGCTTGTTC 59.207 55.000 2.14 0.00 0.00 3.18
4421 5034 1.502231 GTTCTCAGCGAGCTTGTTCA 58.498 50.000 2.14 0.00 0.00 3.18
4422 5035 2.072298 GTTCTCAGCGAGCTTGTTCAT 58.928 47.619 2.14 0.00 0.00 2.57
4423 5036 3.254060 GTTCTCAGCGAGCTTGTTCATA 58.746 45.455 2.14 0.00 0.00 2.15
4424 5037 3.156511 TCTCAGCGAGCTTGTTCATAG 57.843 47.619 2.14 0.00 0.00 2.23
4425 5038 2.755103 TCTCAGCGAGCTTGTTCATAGA 59.245 45.455 2.14 0.00 0.00 1.98
4426 5039 2.857152 CTCAGCGAGCTTGTTCATAGAC 59.143 50.000 2.14 0.00 0.00 2.59
4427 5040 1.929836 CAGCGAGCTTGTTCATAGACC 59.070 52.381 2.14 0.00 0.00 3.85
4428 5041 1.827969 AGCGAGCTTGTTCATAGACCT 59.172 47.619 2.14 0.00 0.00 3.85
4429 5042 2.234908 AGCGAGCTTGTTCATAGACCTT 59.765 45.455 2.14 0.00 0.00 3.50
4430 5043 3.003480 GCGAGCTTGTTCATAGACCTTT 58.997 45.455 2.14 0.00 0.00 3.11
4431 5044 3.062774 GCGAGCTTGTTCATAGACCTTTC 59.937 47.826 2.14 0.00 0.00 2.62
4432 5045 3.304559 CGAGCTTGTTCATAGACCTTTCG 59.695 47.826 0.00 0.00 0.00 3.46
4433 5046 3.600388 AGCTTGTTCATAGACCTTTCGG 58.400 45.455 0.00 0.00 0.00 4.30
4435 5048 3.751698 GCTTGTTCATAGACCTTTCGGTT 59.248 43.478 0.00 0.00 45.73 4.44
4436 5049 4.933400 GCTTGTTCATAGACCTTTCGGTTA 59.067 41.667 0.00 0.00 45.73 2.85
4437 5050 5.163884 GCTTGTTCATAGACCTTTCGGTTAC 60.164 44.000 0.00 0.00 45.73 2.50
4438 5051 5.733620 TGTTCATAGACCTTTCGGTTACT 57.266 39.130 0.00 0.00 45.73 2.24
4439 5052 6.105397 TGTTCATAGACCTTTCGGTTACTT 57.895 37.500 0.00 0.00 45.73 2.24
4440 5053 6.527423 TGTTCATAGACCTTTCGGTTACTTT 58.473 36.000 0.00 0.00 45.73 2.66
4441 5054 6.425721 TGTTCATAGACCTTTCGGTTACTTTG 59.574 38.462 0.00 0.00 45.73 2.77
4442 5055 6.105397 TCATAGACCTTTCGGTTACTTTGT 57.895 37.500 0.00 0.00 45.73 2.83
4443 5056 6.527423 TCATAGACCTTTCGGTTACTTTGTT 58.473 36.000 0.00 0.00 45.73 2.83
4444 5057 6.993902 TCATAGACCTTTCGGTTACTTTGTTT 59.006 34.615 0.00 0.00 45.73 2.83
4445 5058 8.149647 TCATAGACCTTTCGGTTACTTTGTTTA 58.850 33.333 0.00 0.00 45.73 2.01
4446 5059 8.776470 CATAGACCTTTCGGTTACTTTGTTTAA 58.224 33.333 0.00 0.00 45.73 1.52
4447 5060 7.812690 AGACCTTTCGGTTACTTTGTTTAAT 57.187 32.000 0.00 0.00 45.73 1.40
4448 5061 8.907222 AGACCTTTCGGTTACTTTGTTTAATA 57.093 30.769 0.00 0.00 45.73 0.98
4449 5062 9.341078 AGACCTTTCGGTTACTTTGTTTAATAA 57.659 29.630 0.00 0.00 45.73 1.40
4450 5063 9.949174 GACCTTTCGGTTACTTTGTTTAATAAA 57.051 29.630 0.00 0.00 45.73 1.40
4451 5064 9.955208 ACCTTTCGGTTACTTTGTTTAATAAAG 57.045 29.630 11.67 11.67 42.13 1.85
4452 5065 9.401873 CCTTTCGGTTACTTTGTTTAATAAAGG 57.598 33.333 16.34 0.00 38.99 3.11
4453 5066 9.401873 CTTTCGGTTACTTTGTTTAATAAAGGG 57.598 33.333 16.34 3.37 38.99 3.95
4454 5067 7.451501 TCGGTTACTTTGTTTAATAAAGGGG 57.548 36.000 16.34 3.64 38.99 4.79
4455 5068 6.072008 TCGGTTACTTTGTTTAATAAAGGGGC 60.072 38.462 16.34 7.15 38.99 5.80
4456 5069 6.071784 CGGTTACTTTGTTTAATAAAGGGGCT 60.072 38.462 16.34 1.04 38.99 5.19
4457 5070 7.094631 GGTTACTTTGTTTAATAAAGGGGCTG 58.905 38.462 16.34 0.00 38.99 4.85
4458 5071 5.147330 ACTTTGTTTAATAAAGGGGCTGC 57.853 39.130 16.34 0.00 38.99 5.25
4459 5072 4.591072 ACTTTGTTTAATAAAGGGGCTGCA 59.409 37.500 16.34 0.00 38.99 4.41
4460 5073 5.248248 ACTTTGTTTAATAAAGGGGCTGCAT 59.752 36.000 16.34 0.00 38.99 3.96
4461 5074 4.734398 TGTTTAATAAAGGGGCTGCATG 57.266 40.909 0.50 0.00 0.00 4.06
4462 5075 3.118811 TGTTTAATAAAGGGGCTGCATGC 60.119 43.478 11.82 11.82 41.94 4.06
4463 5076 2.450867 TAATAAAGGGGCTGCATGCA 57.549 45.000 21.29 21.29 45.15 3.96
4464 5077 1.797320 AATAAAGGGGCTGCATGCAT 58.203 45.000 22.97 6.91 45.15 3.96
4465 5078 1.335145 ATAAAGGGGCTGCATGCATC 58.665 50.000 22.97 17.75 45.15 3.91
4466 5079 0.033306 TAAAGGGGCTGCATGCATCA 60.033 50.000 22.97 0.00 45.15 3.07
4467 5080 1.610554 AAAGGGGCTGCATGCATCAC 61.611 55.000 22.97 18.98 45.15 3.06
4468 5081 2.441532 GGGGCTGCATGCATCACT 60.442 61.111 22.97 0.00 45.15 3.41
4469 5082 2.056223 GGGGCTGCATGCATCACTT 61.056 57.895 22.97 0.00 45.15 3.16
4470 5083 1.610554 GGGGCTGCATGCATCACTTT 61.611 55.000 22.97 0.00 45.15 2.66
4471 5084 0.459585 GGGCTGCATGCATCACTTTG 60.460 55.000 22.97 8.76 45.15 2.77
4472 5085 0.528924 GGCTGCATGCATCACTTTGA 59.471 50.000 22.97 0.00 45.15 2.69
4473 5086 1.136305 GGCTGCATGCATCACTTTGAT 59.864 47.619 22.97 0.00 45.15 2.57
4487 5100 3.883631 CTTTGATGCAAAGGCCAAAAC 57.116 42.857 5.01 0.00 44.75 2.43
4488 5101 2.996249 TTGATGCAAAGGCCAAAACA 57.004 40.000 5.01 0.00 40.13 2.83
4489 5102 2.996249 TGATGCAAAGGCCAAAACAA 57.004 40.000 5.01 0.00 40.13 2.83
4490 5103 3.272574 TGATGCAAAGGCCAAAACAAA 57.727 38.095 5.01 0.00 40.13 2.83
4491 5104 3.614092 TGATGCAAAGGCCAAAACAAAA 58.386 36.364 5.01 0.00 40.13 2.44
4492 5105 3.376546 TGATGCAAAGGCCAAAACAAAAC 59.623 39.130 5.01 0.00 40.13 2.43
4493 5106 2.783135 TGCAAAGGCCAAAACAAAACA 58.217 38.095 5.01 0.00 40.13 2.83
4494 5107 3.149196 TGCAAAGGCCAAAACAAAACAA 58.851 36.364 5.01 0.00 40.13 2.83
4495 5108 3.569701 TGCAAAGGCCAAAACAAAACAAA 59.430 34.783 5.01 0.00 40.13 2.83
4496 5109 4.037923 TGCAAAGGCCAAAACAAAACAAAA 59.962 33.333 5.01 0.00 40.13 2.44
4497 5110 5.167121 GCAAAGGCCAAAACAAAACAAAAT 58.833 33.333 5.01 0.00 0.00 1.82
4498 5111 5.288232 GCAAAGGCCAAAACAAAACAAAATC 59.712 36.000 5.01 0.00 0.00 2.17
4499 5112 6.385033 CAAAGGCCAAAACAAAACAAAATCA 58.615 32.000 5.01 0.00 0.00 2.57
4500 5113 6.581171 AAGGCCAAAACAAAACAAAATCAA 57.419 29.167 5.01 0.00 0.00 2.57
4501 5114 6.581171 AGGCCAAAACAAAACAAAATCAAA 57.419 29.167 5.01 0.00 0.00 2.69
4502 5115 6.385843 AGGCCAAAACAAAACAAAATCAAAC 58.614 32.000 5.01 0.00 0.00 2.93
4503 5116 5.284897 GGCCAAAACAAAACAAAATCAAACG 59.715 36.000 0.00 0.00 0.00 3.60
4504 5117 6.080406 GCCAAAACAAAACAAAATCAAACGA 58.920 32.000 0.00 0.00 0.00 3.85
4505 5118 6.031938 GCCAAAACAAAACAAAATCAAACGAC 59.968 34.615 0.00 0.00 0.00 4.34
4506 5119 6.521477 CCAAAACAAAACAAAATCAAACGACC 59.479 34.615 0.00 0.00 0.00 4.79
4507 5120 7.294473 CAAAACAAAACAAAATCAAACGACCT 58.706 30.769 0.00 0.00 0.00 3.85
4508 5121 8.436200 CAAAACAAAACAAAATCAAACGACCTA 58.564 29.630 0.00 0.00 0.00 3.08
4509 5122 7.749539 AACAAAACAAAATCAAACGACCTAG 57.250 32.000 0.00 0.00 0.00 3.02
4510 5123 5.746721 ACAAAACAAAATCAAACGACCTAGC 59.253 36.000 0.00 0.00 0.00 3.42
4511 5124 5.508200 AAACAAAATCAAACGACCTAGCA 57.492 34.783 0.00 0.00 0.00 3.49
4512 5125 4.749245 ACAAAATCAAACGACCTAGCAG 57.251 40.909 0.00 0.00 0.00 4.24
4513 5126 3.058224 ACAAAATCAAACGACCTAGCAGC 60.058 43.478 0.00 0.00 0.00 5.25
4540 5156 0.040067 CGGAAGCTTCACAAGTTGGC 60.040 55.000 27.02 6.18 0.00 4.52
4588 5207 6.238374 GGTGCTCGCTTATGTTATGTTATGTT 60.238 38.462 0.00 0.00 0.00 2.71
4590 5209 8.495949 GTGCTCGCTTATGTTATGTTATGTTAT 58.504 33.333 0.00 0.00 0.00 1.89
4591 5210 8.495148 TGCTCGCTTATGTTATGTTATGTTATG 58.505 33.333 0.00 0.00 0.00 1.90
4592 5211 7.478667 GCTCGCTTATGTTATGTTATGTTATGC 59.521 37.037 0.00 0.00 0.00 3.14
4593 5212 8.371770 TCGCTTATGTTATGTTATGTTATGCA 57.628 30.769 0.00 0.00 0.00 3.96
4595 5214 8.282592 CGCTTATGTTATGTTATGTTATGCACT 58.717 33.333 0.00 0.00 0.00 4.40
4596 5215 9.950680 GCTTATGTTATGTTATGTTATGCACTT 57.049 29.630 0.00 0.00 0.00 3.16
4598 5217 9.729023 TTATGTTATGTTATGTTATGCACTTGC 57.271 29.630 0.00 0.00 42.50 4.01
4658 5286 3.418675 TCGGCTACGAGCTTTTGAG 57.581 52.632 6.78 0.00 45.59 3.02
4659 5287 0.108804 TCGGCTACGAGCTTTTGAGG 60.109 55.000 6.78 0.00 45.59 3.86
4660 5288 1.696832 CGGCTACGAGCTTTTGAGGC 61.697 60.000 6.78 0.00 44.60 4.70
4668 5314 0.251519 AGCTTTTGAGGCCCCTCTTG 60.252 55.000 14.93 4.53 43.12 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
458 459 1.131218 CTGAACTGTGCATGACGCG 59.869 57.895 3.53 3.53 46.97 6.01
459 460 0.110509 CACTGAACTGTGCATGACGC 60.111 55.000 0.00 0.00 42.89 5.19
460 461 1.501169 TCACTGAACTGTGCATGACG 58.499 50.000 0.00 0.00 37.81 4.35
461 462 5.611796 TTAATCACTGAACTGTGCATGAC 57.388 39.130 0.00 0.00 37.81 3.06
462 463 5.764686 AGTTTAATCACTGAACTGTGCATGA 59.235 36.000 0.00 0.00 37.81 3.07
463 464 6.005583 AGTTTAATCACTGAACTGTGCATG 57.994 37.500 0.00 0.00 37.81 4.06
464 465 7.755591 CATAGTTTAATCACTGAACTGTGCAT 58.244 34.615 0.00 2.20 36.30 3.96
465 466 7.132694 CATAGTTTAATCACTGAACTGTGCA 57.867 36.000 6.90 0.00 36.30 4.57
467 468 6.149308 TGGCATAGTTTAATCACTGAACTGTG 59.851 38.462 7.54 7.54 42.08 3.66
468 469 6.149474 GTGGCATAGTTTAATCACTGAACTGT 59.851 38.462 0.00 0.00 35.43 3.55
469 470 6.372659 AGTGGCATAGTTTAATCACTGAACTG 59.627 38.462 0.00 0.00 35.43 3.16
470 471 6.476378 AGTGGCATAGTTTAATCACTGAACT 58.524 36.000 0.00 0.00 37.40 3.01
471 472 6.743575 AGTGGCATAGTTTAATCACTGAAC 57.256 37.500 0.00 0.00 34.65 3.18
472 473 7.620880 AGTAGTGGCATAGTTTAATCACTGAA 58.379 34.615 0.00 0.00 36.87 3.02
473 474 7.182817 AGTAGTGGCATAGTTTAATCACTGA 57.817 36.000 0.00 0.00 36.87 3.41
474 475 8.942338 TTAGTAGTGGCATAGTTTAATCACTG 57.058 34.615 0.00 0.00 36.87 3.66
481 482 8.645110 GGAACCTATTAGTAGTGGCATAGTTTA 58.355 37.037 0.00 0.00 0.00 2.01
482 483 7.506971 GGAACCTATTAGTAGTGGCATAGTTT 58.493 38.462 0.00 0.00 0.00 2.66
483 484 6.239232 CGGAACCTATTAGTAGTGGCATAGTT 60.239 42.308 0.00 0.00 0.00 2.24
484 485 5.243283 CGGAACCTATTAGTAGTGGCATAGT 59.757 44.000 0.00 0.00 0.00 2.12
485 486 5.475909 TCGGAACCTATTAGTAGTGGCATAG 59.524 44.000 0.00 0.00 0.00 2.23
486 487 5.387788 TCGGAACCTATTAGTAGTGGCATA 58.612 41.667 0.00 0.00 0.00 3.14
487 488 4.220724 TCGGAACCTATTAGTAGTGGCAT 58.779 43.478 0.00 0.00 0.00 4.40
488 489 3.634504 TCGGAACCTATTAGTAGTGGCA 58.365 45.455 0.00 0.00 0.00 4.92
489 490 4.038883 ACATCGGAACCTATTAGTAGTGGC 59.961 45.833 0.00 0.00 0.00 5.01
490 491 5.535406 AGACATCGGAACCTATTAGTAGTGG 59.465 44.000 0.00 0.00 0.00 4.00
491 492 6.262496 TGAGACATCGGAACCTATTAGTAGTG 59.738 42.308 0.00 0.00 0.00 2.74
492 493 6.363065 TGAGACATCGGAACCTATTAGTAGT 58.637 40.000 0.00 0.00 0.00 2.73
493 494 6.879276 TGAGACATCGGAACCTATTAGTAG 57.121 41.667 0.00 0.00 0.00 2.57
494 495 6.294564 GCATGAGACATCGGAACCTATTAGTA 60.295 42.308 0.00 0.00 0.00 1.82
495 496 5.509840 GCATGAGACATCGGAACCTATTAGT 60.510 44.000 0.00 0.00 0.00 2.24
496 497 4.926238 GCATGAGACATCGGAACCTATTAG 59.074 45.833 0.00 0.00 0.00 1.73
497 498 4.343814 TGCATGAGACATCGGAACCTATTA 59.656 41.667 0.00 0.00 0.00 0.98
498 499 3.134623 TGCATGAGACATCGGAACCTATT 59.865 43.478 0.00 0.00 0.00 1.73
499 500 2.700371 TGCATGAGACATCGGAACCTAT 59.300 45.455 0.00 0.00 0.00 2.57
500 501 2.107366 TGCATGAGACATCGGAACCTA 58.893 47.619 0.00 0.00 0.00 3.08
501 502 0.904649 TGCATGAGACATCGGAACCT 59.095 50.000 0.00 0.00 0.00 3.50
502 503 1.600957 CATGCATGAGACATCGGAACC 59.399 52.381 22.59 0.00 0.00 3.62
503 504 1.003116 GCATGCATGAGACATCGGAAC 60.003 52.381 30.64 3.82 0.00 3.62
504 505 1.134310 AGCATGCATGAGACATCGGAA 60.134 47.619 30.64 0.00 0.00 4.30
505 506 0.466963 AGCATGCATGAGACATCGGA 59.533 50.000 30.64 0.00 0.00 4.55
506 507 0.866427 GAGCATGCATGAGACATCGG 59.134 55.000 30.64 0.20 0.00 4.18
507 508 1.793532 GAGAGCATGCATGAGACATCG 59.206 52.381 30.64 1.01 0.00 3.84
508 509 3.114668 AGAGAGCATGCATGAGACATC 57.885 47.619 30.64 17.81 0.00 3.06
509 510 3.562343 AAGAGAGCATGCATGAGACAT 57.438 42.857 30.64 10.23 0.00 3.06
510 511 3.345508 AAAGAGAGCATGCATGAGACA 57.654 42.857 30.64 0.00 0.00 3.41
511 512 6.260493 AGAATAAAAGAGAGCATGCATGAGAC 59.740 38.462 30.64 18.37 0.00 3.36
512 513 6.260271 CAGAATAAAAGAGAGCATGCATGAGA 59.740 38.462 30.64 3.88 0.00 3.27
513 514 6.260271 TCAGAATAAAAGAGAGCATGCATGAG 59.740 38.462 30.64 5.13 0.00 2.90
514 515 6.117488 TCAGAATAAAAGAGAGCATGCATGA 58.883 36.000 30.64 6.12 0.00 3.07
515 516 6.373186 TCAGAATAAAAGAGAGCATGCATG 57.627 37.500 22.70 22.70 0.00 4.06
516 517 6.999272 AGATCAGAATAAAAGAGAGCATGCAT 59.001 34.615 21.98 7.95 0.00 3.96
517 518 6.354938 AGATCAGAATAAAAGAGAGCATGCA 58.645 36.000 21.98 0.00 0.00 3.96
518 519 6.864360 AGATCAGAATAAAAGAGAGCATGC 57.136 37.500 10.51 10.51 0.00 4.06
519 520 7.133513 GCAAGATCAGAATAAAAGAGAGCATG 58.866 38.462 0.00 0.00 0.00 4.06
520 521 6.262720 GGCAAGATCAGAATAAAAGAGAGCAT 59.737 38.462 0.00 0.00 0.00 3.79
521 522 5.587844 GGCAAGATCAGAATAAAAGAGAGCA 59.412 40.000 0.00 0.00 0.00 4.26
522 523 5.587844 TGGCAAGATCAGAATAAAAGAGAGC 59.412 40.000 0.00 0.00 0.00 4.09
523 524 6.596888 TGTGGCAAGATCAGAATAAAAGAGAG 59.403 38.462 0.00 0.00 0.00 3.20
524 525 6.372659 GTGTGGCAAGATCAGAATAAAAGAGA 59.627 38.462 0.00 0.00 0.00 3.10
525 526 6.549952 GTGTGGCAAGATCAGAATAAAAGAG 58.450 40.000 0.00 0.00 0.00 2.85
526 527 5.122239 CGTGTGGCAAGATCAGAATAAAAGA 59.878 40.000 0.00 0.00 0.00 2.52
527 528 5.106555 ACGTGTGGCAAGATCAGAATAAAAG 60.107 40.000 0.00 0.00 0.00 2.27
528 529 4.759693 ACGTGTGGCAAGATCAGAATAAAA 59.240 37.500 0.00 0.00 0.00 1.52
529 530 4.323417 ACGTGTGGCAAGATCAGAATAAA 58.677 39.130 0.00 0.00 0.00 1.40
530 531 3.932710 GACGTGTGGCAAGATCAGAATAA 59.067 43.478 0.00 0.00 0.00 1.40
531 532 3.521560 GACGTGTGGCAAGATCAGAATA 58.478 45.455 0.00 0.00 0.00 1.75
532 533 2.350522 GACGTGTGGCAAGATCAGAAT 58.649 47.619 0.00 0.00 0.00 2.40
533 534 1.608025 GGACGTGTGGCAAGATCAGAA 60.608 52.381 0.00 0.00 0.00 3.02
534 535 0.037326 GGACGTGTGGCAAGATCAGA 60.037 55.000 0.00 0.00 0.00 3.27
535 536 1.354337 CGGACGTGTGGCAAGATCAG 61.354 60.000 0.00 0.00 0.00 2.90
536 537 1.374125 CGGACGTGTGGCAAGATCA 60.374 57.895 0.00 0.00 0.00 2.92
537 538 2.740714 GCGGACGTGTGGCAAGATC 61.741 63.158 0.00 0.00 0.00 2.75
538 539 2.742372 GCGGACGTGTGGCAAGAT 60.742 61.111 0.00 0.00 0.00 2.40
539 540 3.923864 AGCGGACGTGTGGCAAGA 61.924 61.111 0.00 0.00 0.00 3.02
540 541 3.716006 CAGCGGACGTGTGGCAAG 61.716 66.667 0.00 0.00 0.00 4.01
541 542 4.228567 TCAGCGGACGTGTGGCAA 62.229 61.111 0.00 0.00 0.00 4.52
542 543 4.662961 CTCAGCGGACGTGTGGCA 62.663 66.667 0.00 0.00 0.00 4.92
543 544 4.664677 ACTCAGCGGACGTGTGGC 62.665 66.667 0.00 0.00 0.00 5.01
544 545 2.734723 CACTCAGCGGACGTGTGG 60.735 66.667 0.00 0.00 0.00 4.17
545 546 1.548973 GAACACTCAGCGGACGTGTG 61.549 60.000 17.53 11.40 40.68 3.82
546 547 1.299926 GAACACTCAGCGGACGTGT 60.300 57.895 13.33 13.33 43.14 4.49
547 548 1.278172 CTGAACACTCAGCGGACGTG 61.278 60.000 0.00 12.34 42.66 4.49
548 549 1.007271 CTGAACACTCAGCGGACGT 60.007 57.895 0.00 0.00 42.66 4.34
549 550 1.734477 CCTGAACACTCAGCGGACG 60.734 63.158 0.00 0.00 46.76 4.79
550 551 0.249911 AACCTGAACACTCAGCGGAC 60.250 55.000 0.00 0.00 46.76 4.79
551 552 1.000506 GTAACCTGAACACTCAGCGGA 59.999 52.381 0.00 0.00 46.76 5.54
552 553 1.000955 AGTAACCTGAACACTCAGCGG 59.999 52.381 0.00 0.00 46.76 5.52
553 554 2.440539 AGTAACCTGAACACTCAGCG 57.559 50.000 0.00 0.00 46.76 5.18
554 555 4.381411 AGAAAGTAACCTGAACACTCAGC 58.619 43.478 0.00 0.00 46.76 4.26
568 569 9.609346 GCCACTGAAAGGTAATATAGAAAGTAA 57.391 33.333 0.00 0.00 39.30 2.24
569 570 8.208903 GGCCACTGAAAGGTAATATAGAAAGTA 58.791 37.037 0.00 0.00 39.30 2.24
570 571 7.054751 GGCCACTGAAAGGTAATATAGAAAGT 58.945 38.462 0.00 0.00 39.30 2.66
571 572 6.202954 CGGCCACTGAAAGGTAATATAGAAAG 59.797 42.308 2.24 0.00 39.30 2.62
572 573 6.053005 CGGCCACTGAAAGGTAATATAGAAA 58.947 40.000 2.24 0.00 39.30 2.52
573 574 5.129815 ACGGCCACTGAAAGGTAATATAGAA 59.870 40.000 2.24 0.00 39.30 2.10
574 575 4.652421 ACGGCCACTGAAAGGTAATATAGA 59.348 41.667 2.24 0.00 39.30 1.98
575 576 4.957296 ACGGCCACTGAAAGGTAATATAG 58.043 43.478 2.24 0.00 39.30 1.31
576 577 5.599656 ACTACGGCCACTGAAAGGTAATATA 59.400 40.000 2.24 0.00 39.30 0.86
577 578 3.926058 ACGGCCACTGAAAGGTAATAT 57.074 42.857 2.24 0.00 39.30 1.28
578 579 3.770933 ACTACGGCCACTGAAAGGTAATA 59.229 43.478 2.24 0.00 39.30 0.98
579 580 2.570302 ACTACGGCCACTGAAAGGTAAT 59.430 45.455 2.24 0.00 39.30 1.89
580 581 1.972795 ACTACGGCCACTGAAAGGTAA 59.027 47.619 2.24 0.00 39.30 2.85
581 582 1.636148 ACTACGGCCACTGAAAGGTA 58.364 50.000 2.24 0.00 39.30 3.08
582 583 0.763035 AACTACGGCCACTGAAAGGT 59.237 50.000 2.24 0.00 39.30 3.50
583 584 1.156736 CAACTACGGCCACTGAAAGG 58.843 55.000 2.24 0.00 39.30 3.11
584 585 2.163818 TCAACTACGGCCACTGAAAG 57.836 50.000 2.24 0.00 42.29 2.62
585 586 2.301870 AGATCAACTACGGCCACTGAAA 59.698 45.455 2.24 0.00 0.00 2.69
586 587 1.899814 AGATCAACTACGGCCACTGAA 59.100 47.619 2.24 0.00 0.00 3.02
587 588 1.476891 GAGATCAACTACGGCCACTGA 59.523 52.381 2.24 0.00 0.00 3.41
588 589 1.799181 CGAGATCAACTACGGCCACTG 60.799 57.143 2.24 0.00 0.00 3.66
589 590 0.456221 CGAGATCAACTACGGCCACT 59.544 55.000 2.24 0.00 0.00 4.00
590 591 0.172803 ACGAGATCAACTACGGCCAC 59.827 55.000 2.24 0.00 0.00 5.01
591 592 0.892755 AACGAGATCAACTACGGCCA 59.107 50.000 2.24 0.00 0.00 5.36
592 593 1.135199 TGAACGAGATCAACTACGGCC 60.135 52.381 0.00 0.00 0.00 6.13
593 594 2.273370 TGAACGAGATCAACTACGGC 57.727 50.000 0.00 0.00 0.00 5.68
594 595 5.347635 TGATTTTGAACGAGATCAACTACGG 59.652 40.000 0.00 0.00 38.95 4.02
595 596 6.389622 TGATTTTGAACGAGATCAACTACG 57.610 37.500 0.00 0.00 38.95 3.51
596 597 7.963981 TCATGATTTTGAACGAGATCAACTAC 58.036 34.615 0.00 0.00 38.95 2.73
597 598 7.819415 ACTCATGATTTTGAACGAGATCAACTA 59.181 33.333 0.00 0.00 38.95 2.24
598 599 6.652481 ACTCATGATTTTGAACGAGATCAACT 59.348 34.615 0.00 0.00 38.95 3.16
608 609 7.756722 CCCATGTAAGAACTCATGATTTTGAAC 59.243 37.037 0.00 0.00 42.52 3.18
624 625 0.030092 CCCTCCCTCCCCATGTAAGA 60.030 60.000 0.00 0.00 0.00 2.10
802 1027 6.659242 TCCTTGTTATTTGAGAGAATTGGACC 59.341 38.462 0.00 0.00 0.00 4.46
1115 1340 0.868406 AAAGCGAGTAACAGCAGCAC 59.132 50.000 0.00 0.00 35.48 4.40
1133 1358 0.981183 AACCCAGGTACATCGCTCAA 59.019 50.000 0.00 0.00 0.00 3.02
1134 1359 0.535335 GAACCCAGGTACATCGCTCA 59.465 55.000 0.00 0.00 0.00 4.26
1272 1497 5.521735 GCTCAGACGATCATATGTTTTGAGT 59.478 40.000 1.90 0.00 34.90 3.41
1407 1632 3.195698 GGACAGATGCCGAACCGC 61.196 66.667 0.00 0.00 0.00 5.68
1422 1647 1.078497 CGCATGGTTGTAGCTGGGA 60.078 57.895 0.00 0.00 0.00 4.37
1447 1672 2.416027 GCTTCTCGTCATACTCAGCACA 60.416 50.000 0.00 0.00 0.00 4.57
1452 1677 3.759086 ACAGAAGCTTCTCGTCATACTCA 59.241 43.478 26.18 0.00 34.74 3.41
1491 1716 3.573967 CCTCCATTTTGCCTGTAAGTTGT 59.426 43.478 0.00 0.00 0.00 3.32
1505 1730 1.636003 GTTCCACCTCCTCCTCCATTT 59.364 52.381 0.00 0.00 0.00 2.32
1509 1734 2.176247 TATGTTCCACCTCCTCCTCC 57.824 55.000 0.00 0.00 0.00 4.30
1512 1737 4.158764 CGAGATATATGTTCCACCTCCTCC 59.841 50.000 0.00 0.00 0.00 4.30
1525 1750 4.511454 CACAACCAACCACCGAGATATATG 59.489 45.833 0.00 0.00 0.00 1.78
1812 2040 4.330944 AAGAGTTCACGGTACAATGACA 57.669 40.909 0.00 0.00 0.00 3.58
1994 2222 3.136626 GCCAGGTCAACATATACTCCCTT 59.863 47.826 0.00 0.00 0.00 3.95
2010 2238 2.567615 CACTAGTCTAGGTTTGCCAGGT 59.432 50.000 11.61 0.00 37.19 4.00
2078 2324 1.004979 AGACGAGACTAGCACCTCCTT 59.995 52.381 0.00 0.00 0.00 3.36
2088 2334 2.079158 CCGTTGGTACAGACGAGACTA 58.921 52.381 18.26 0.00 42.26 2.59
2108 2362 3.995705 CCTAGAGATAAGCATGCTTGAGC 59.004 47.826 37.21 25.88 42.50 4.26
2220 2475 2.666190 GCTGCAGGTGCGAGAACA 60.666 61.111 17.12 0.00 45.83 3.18
2274 2529 1.174712 TTCCTCAAGTGGCAGCTTGC 61.175 55.000 18.78 0.00 43.92 4.01
2366 2621 0.172578 TACAGACGCGTGGGAATGAG 59.827 55.000 20.70 0.00 0.00 2.90
2381 2636 3.815401 GGCCAAACTATATGCAGGTACAG 59.185 47.826 0.00 0.00 0.00 2.74
2395 2650 3.289834 CGCAGCTGTGGCCAAACT 61.290 61.111 19.78 1.35 39.73 2.66
2624 2879 4.521146 AGAAAGGAATGCACCTAGTCATG 58.479 43.478 0.00 0.00 39.62 3.07
2750 3005 3.763897 CCTGGACCAAACTTATTCCCTTG 59.236 47.826 0.00 0.00 0.00 3.61
2881 3136 2.229062 GCTAGCCCTCACAAAAAGGAAC 59.771 50.000 2.29 0.00 35.83 3.62
2883 3138 1.705186 AGCTAGCCCTCACAAAAAGGA 59.295 47.619 12.13 0.00 35.83 3.36
2923 3178 1.278985 CTGGGCAAGATGTGTACCTGA 59.721 52.381 0.00 0.00 31.50 3.86
3004 3264 2.444700 GAATCCGGTCCACCACGTGT 62.445 60.000 15.65 0.00 35.14 4.49
3225 3578 3.882888 CAGAGACAGGTGGATAGACTCTC 59.117 52.174 0.00 0.00 32.12 3.20
3240 3593 5.126222 CAGTACTCAGATTAAGGCAGAGACA 59.874 44.000 0.00 0.00 0.00 3.41
3255 3608 4.252073 AGAAATTGCAGCTCAGTACTCAG 58.748 43.478 0.00 0.00 0.00 3.35
3257 3610 4.692625 TGAAGAAATTGCAGCTCAGTACTC 59.307 41.667 0.00 0.00 0.00 2.59
3278 3631 2.025981 ACCTGCATAGCTCAACCAATGA 60.026 45.455 0.00 0.00 36.38 2.57
3289 3642 0.320771 CCCGGATACACCTGCATAGC 60.321 60.000 0.73 0.00 36.31 2.97
3329 3682 6.150474 CCGTGTATCCAAAAATTCTACCTGTT 59.850 38.462 0.00 0.00 0.00 3.16
3339 3692 3.267483 CTCCGACCGTGTATCCAAAAAT 58.733 45.455 0.00 0.00 0.00 1.82
3479 3832 3.130340 GGTCAACACACACAGGTTTCATT 59.870 43.478 0.00 0.00 0.00 2.57
3709 4062 1.529226 CTATCCTCCTCGCATCGACT 58.471 55.000 0.00 0.00 0.00 4.18
3715 4068 1.448119 CGTGAGCTATCCTCCTCGCA 61.448 60.000 0.00 0.00 39.98 5.10
3805 4217 4.408821 GTCCATGGCACGCCTCCA 62.409 66.667 6.96 0.00 38.09 3.86
3823 4235 8.820933 ACACATATATTCACAAACTCAAGATCG 58.179 33.333 0.00 0.00 0.00 3.69
3906 4320 0.390124 AAGGCAAGCAACACACCATG 59.610 50.000 0.00 0.00 0.00 3.66
3910 4324 0.667993 TAGCAAGGCAAGCAACACAC 59.332 50.000 4.05 0.00 0.00 3.82
4105 4519 4.270325 AGTGAAAAGAAACGGAAAGAGACG 59.730 41.667 0.00 0.00 0.00 4.18
4112 4538 9.932207 TCTAATATACAGTGAAAAGAAACGGAA 57.068 29.630 0.00 0.00 0.00 4.30
4288 4888 3.603857 CGCAAGTTTGGTCGAGTTTGTAG 60.604 47.826 0.00 0.00 0.00 2.74
4289 4889 2.285756 CGCAAGTTTGGTCGAGTTTGTA 59.714 45.455 0.00 0.00 0.00 2.41
4290 4890 1.063469 CGCAAGTTTGGTCGAGTTTGT 59.937 47.619 0.00 0.00 0.00 2.83
4291 4891 1.329292 TCGCAAGTTTGGTCGAGTTTG 59.671 47.619 0.00 0.00 39.48 2.93
4292 4892 1.658994 TCGCAAGTTTGGTCGAGTTT 58.341 45.000 0.00 0.00 39.48 2.66
4293 4893 1.597663 CTTCGCAAGTTTGGTCGAGTT 59.402 47.619 0.00 0.00 39.48 3.01
4294 4894 1.217882 CTTCGCAAGTTTGGTCGAGT 58.782 50.000 0.00 0.00 39.48 4.18
4295 4895 1.217882 ACTTCGCAAGTTTGGTCGAG 58.782 50.000 0.00 0.00 39.04 4.04
4296 4896 3.372795 ACTTCGCAAGTTTGGTCGA 57.627 47.368 0.00 0.00 39.04 4.20
4307 4907 7.820044 AATTTGTTTAAAGTCAAACTTCGCA 57.180 28.000 6.22 0.00 37.47 5.10
4324 4935 9.522804 TTTTTCACTCTGCGTATAAAATTTGTT 57.477 25.926 0.00 0.00 0.00 2.83
4354 4966 9.310449 ACAAGGAAATATATATACTCCGTCAGT 57.690 33.333 14.08 10.28 39.41 3.41
4378 4991 1.234821 GGAAGGTCGTTTGATGCACA 58.765 50.000 0.00 0.00 0.00 4.57
4390 5003 2.125633 GAGAACCGGCGGAAGGTC 60.126 66.667 35.78 22.14 41.95 3.85
4391 5004 2.920912 TGAGAACCGGCGGAAGGT 60.921 61.111 35.78 14.62 45.29 3.50
4392 5005 2.125512 CTGAGAACCGGCGGAAGG 60.126 66.667 35.78 11.94 0.00 3.46
4398 5011 3.941657 AAGCTCGCTGAGAACCGGC 62.942 63.158 0.00 0.00 43.72 6.13
4399 5012 2.097038 CAAGCTCGCTGAGAACCGG 61.097 63.158 0.00 0.00 0.00 5.28
4400 5013 0.946221 AACAAGCTCGCTGAGAACCG 60.946 55.000 9.32 0.00 0.00 4.44
4401 5014 0.793250 GAACAAGCTCGCTGAGAACC 59.207 55.000 9.32 0.00 0.00 3.62
4402 5015 1.502231 TGAACAAGCTCGCTGAGAAC 58.498 50.000 9.32 0.00 0.00 3.01
4403 5016 2.462456 ATGAACAAGCTCGCTGAGAA 57.538 45.000 9.32 0.00 0.00 2.87
4404 5017 2.755103 TCTATGAACAAGCTCGCTGAGA 59.245 45.455 9.32 0.00 0.00 3.27
4405 5018 2.857152 GTCTATGAACAAGCTCGCTGAG 59.143 50.000 0.00 1.80 0.00 3.35
4406 5019 2.417379 GGTCTATGAACAAGCTCGCTGA 60.417 50.000 0.00 0.00 0.00 4.26
4407 5020 1.929836 GGTCTATGAACAAGCTCGCTG 59.070 52.381 0.00 0.00 0.00 5.18
4408 5021 1.827969 AGGTCTATGAACAAGCTCGCT 59.172 47.619 0.00 0.00 0.00 4.93
4409 5022 2.301577 AGGTCTATGAACAAGCTCGC 57.698 50.000 0.00 0.00 0.00 5.03
4410 5023 3.304559 CGAAAGGTCTATGAACAAGCTCG 59.695 47.826 0.00 0.00 0.00 5.03
4411 5024 4.849111 CGAAAGGTCTATGAACAAGCTC 57.151 45.455 0.00 0.00 0.00 4.09
4426 5039 9.401873 CCTTTATTAAACAAAGTAACCGAAAGG 57.598 33.333 10.39 0.00 43.04 3.11
4427 5040 9.401873 CCCTTTATTAAACAAAGTAACCGAAAG 57.598 33.333 10.39 0.00 32.23 2.62
4428 5041 8.358895 CCCCTTTATTAAACAAAGTAACCGAAA 58.641 33.333 10.39 0.00 32.23 3.46
4429 5042 7.523544 GCCCCTTTATTAAACAAAGTAACCGAA 60.524 37.037 10.39 0.00 32.23 4.30
4430 5043 6.072008 GCCCCTTTATTAAACAAAGTAACCGA 60.072 38.462 10.39 0.00 32.23 4.69
4431 5044 6.071784 AGCCCCTTTATTAAACAAAGTAACCG 60.072 38.462 10.39 0.00 32.23 4.44
4432 5045 7.094631 CAGCCCCTTTATTAAACAAAGTAACC 58.905 38.462 10.39 0.47 32.23 2.85
4433 5046 6.588756 GCAGCCCCTTTATTAAACAAAGTAAC 59.411 38.462 10.39 2.41 32.23 2.50
4434 5047 6.267928 TGCAGCCCCTTTATTAAACAAAGTAA 59.732 34.615 10.39 0.00 32.23 2.24
4435 5048 5.775701 TGCAGCCCCTTTATTAAACAAAGTA 59.224 36.000 10.39 0.00 32.23 2.24
4436 5049 4.591072 TGCAGCCCCTTTATTAAACAAAGT 59.409 37.500 10.39 0.00 32.23 2.66
4437 5050 5.146010 TGCAGCCCCTTTATTAAACAAAG 57.854 39.130 6.12 6.12 33.62 2.77
4438 5051 5.486526 CATGCAGCCCCTTTATTAAACAAA 58.513 37.500 0.00 0.00 0.00 2.83
4439 5052 4.622695 GCATGCAGCCCCTTTATTAAACAA 60.623 41.667 14.21 0.00 37.23 2.83
4440 5053 3.118811 GCATGCAGCCCCTTTATTAAACA 60.119 43.478 14.21 0.00 37.23 2.83
4441 5054 3.118811 TGCATGCAGCCCCTTTATTAAAC 60.119 43.478 18.46 0.00 44.83 2.01
4442 5055 3.102972 TGCATGCAGCCCCTTTATTAAA 58.897 40.909 18.46 0.00 44.83 1.52
4443 5056 2.744760 TGCATGCAGCCCCTTTATTAA 58.255 42.857 18.46 0.00 44.83 1.40
4444 5057 2.450867 TGCATGCAGCCCCTTTATTA 57.549 45.000 18.46 0.00 44.83 0.98
4445 5058 1.690352 GATGCATGCAGCCCCTTTATT 59.310 47.619 25.21 3.44 44.83 1.40
4446 5059 1.335145 GATGCATGCAGCCCCTTTAT 58.665 50.000 25.21 4.28 44.83 1.40
4447 5060 0.033306 TGATGCATGCAGCCCCTTTA 60.033 50.000 31.30 10.43 44.83 1.85
4448 5061 1.305465 TGATGCATGCAGCCCCTTT 60.305 52.632 31.30 10.63 44.83 3.11
4449 5062 2.056223 GTGATGCATGCAGCCCCTT 61.056 57.895 31.30 11.44 44.83 3.95
4450 5063 2.441532 GTGATGCATGCAGCCCCT 60.442 61.111 31.30 12.25 44.83 4.79
4451 5064 1.610554 AAAGTGATGCATGCAGCCCC 61.611 55.000 31.30 21.66 44.83 5.80
4452 5065 0.459585 CAAAGTGATGCATGCAGCCC 60.460 55.000 31.30 21.81 44.83 5.19
4453 5066 0.528924 TCAAAGTGATGCATGCAGCC 59.471 50.000 31.30 22.08 44.83 4.85
4454 5067 2.193447 CATCAAAGTGATGCATGCAGC 58.807 47.619 28.44 28.44 46.37 5.25
4463 5076 2.250031 TGGCCTTTGCATCAAAGTGAT 58.750 42.857 15.51 0.00 46.40 3.06
4464 5077 1.702182 TGGCCTTTGCATCAAAGTGA 58.298 45.000 15.51 0.26 46.40 3.41
4465 5078 2.529780 TTGGCCTTTGCATCAAAGTG 57.470 45.000 15.51 9.66 46.40 3.16
4466 5079 3.205338 GTTTTGGCCTTTGCATCAAAGT 58.795 40.909 15.51 0.00 46.40 2.66
4468 5081 3.272574 TGTTTTGGCCTTTGCATCAAA 57.727 38.095 3.32 0.00 40.13 2.69
4469 5082 2.996249 TGTTTTGGCCTTTGCATCAA 57.004 40.000 3.32 0.00 40.13 2.57
4470 5083 2.996249 TTGTTTTGGCCTTTGCATCA 57.004 40.000 3.32 0.00 40.13 3.07
4471 5084 3.376546 TGTTTTGTTTTGGCCTTTGCATC 59.623 39.130 3.32 0.00 40.13 3.91
4472 5085 3.350833 TGTTTTGTTTTGGCCTTTGCAT 58.649 36.364 3.32 0.00 40.13 3.96
4473 5086 2.783135 TGTTTTGTTTTGGCCTTTGCA 58.217 38.095 3.32 0.00 40.13 4.08
4474 5087 3.839051 TTGTTTTGTTTTGGCCTTTGC 57.161 38.095 3.32 0.00 0.00 3.68
4475 5088 6.385033 TGATTTTGTTTTGTTTTGGCCTTTG 58.615 32.000 3.32 0.00 0.00 2.77
4476 5089 6.581171 TGATTTTGTTTTGTTTTGGCCTTT 57.419 29.167 3.32 0.00 0.00 3.11
4477 5090 6.581171 TTGATTTTGTTTTGTTTTGGCCTT 57.419 29.167 3.32 0.00 0.00 4.35
4478 5091 6.385843 GTTTGATTTTGTTTTGTTTTGGCCT 58.614 32.000 3.32 0.00 0.00 5.19
4479 5092 5.284897 CGTTTGATTTTGTTTTGTTTTGGCC 59.715 36.000 0.00 0.00 0.00 5.36
4480 5093 6.031938 GTCGTTTGATTTTGTTTTGTTTTGGC 59.968 34.615 0.00 0.00 0.00 4.52
4481 5094 6.521477 GGTCGTTTGATTTTGTTTTGTTTTGG 59.479 34.615 0.00 0.00 0.00 3.28
4482 5095 7.294473 AGGTCGTTTGATTTTGTTTTGTTTTG 58.706 30.769 0.00 0.00 0.00 2.44
4483 5096 7.428282 AGGTCGTTTGATTTTGTTTTGTTTT 57.572 28.000 0.00 0.00 0.00 2.43
4484 5097 7.201487 GCTAGGTCGTTTGATTTTGTTTTGTTT 60.201 33.333 0.00 0.00 0.00 2.83
4485 5098 6.254804 GCTAGGTCGTTTGATTTTGTTTTGTT 59.745 34.615 0.00 0.00 0.00 2.83
4486 5099 5.746721 GCTAGGTCGTTTGATTTTGTTTTGT 59.253 36.000 0.00 0.00 0.00 2.83
4487 5100 5.746245 TGCTAGGTCGTTTGATTTTGTTTTG 59.254 36.000 0.00 0.00 0.00 2.44
4488 5101 5.897050 TGCTAGGTCGTTTGATTTTGTTTT 58.103 33.333 0.00 0.00 0.00 2.43
4489 5102 5.508200 TGCTAGGTCGTTTGATTTTGTTT 57.492 34.783 0.00 0.00 0.00 2.83
4490 5103 4.556699 GCTGCTAGGTCGTTTGATTTTGTT 60.557 41.667 0.00 0.00 0.00 2.83
4491 5104 3.058224 GCTGCTAGGTCGTTTGATTTTGT 60.058 43.478 0.00 0.00 0.00 2.83
4492 5105 3.058293 TGCTGCTAGGTCGTTTGATTTTG 60.058 43.478 0.00 0.00 0.00 2.44
4493 5106 3.146066 TGCTGCTAGGTCGTTTGATTTT 58.854 40.909 0.00 0.00 0.00 1.82
4494 5107 2.778299 TGCTGCTAGGTCGTTTGATTT 58.222 42.857 0.00 0.00 0.00 2.17
4495 5108 2.472695 TGCTGCTAGGTCGTTTGATT 57.527 45.000 0.00 0.00 0.00 2.57
4496 5109 2.350522 CTTGCTGCTAGGTCGTTTGAT 58.649 47.619 0.00 0.00 0.00 2.57
4497 5110 1.795768 CTTGCTGCTAGGTCGTTTGA 58.204 50.000 0.00 0.00 0.00 2.69
4498 5111 0.166814 GCTTGCTGCTAGGTCGTTTG 59.833 55.000 12.76 0.00 38.95 2.93
4499 5112 0.250295 TGCTTGCTGCTAGGTCGTTT 60.250 50.000 12.76 0.00 43.37 3.60
4500 5113 0.671781 CTGCTTGCTGCTAGGTCGTT 60.672 55.000 12.76 0.00 43.37 3.85
4501 5114 1.079543 CTGCTTGCTGCTAGGTCGT 60.080 57.895 12.76 0.00 43.37 4.34
4502 5115 2.459442 GCTGCTTGCTGCTAGGTCG 61.459 63.158 15.47 0.00 43.37 4.79
4503 5116 2.111582 GGCTGCTTGCTGCTAGGTC 61.112 63.158 20.43 3.82 43.37 3.85
4504 5117 2.045536 GGCTGCTTGCTGCTAGGT 60.046 61.111 20.43 0.00 43.37 3.08
4505 5118 3.200593 CGGCTGCTTGCTGCTAGG 61.201 66.667 20.43 9.39 41.61 3.02
4506 5119 3.200593 CCGGCTGCTTGCTGCTAG 61.201 66.667 20.43 6.74 46.34 3.42
4507 5120 3.252627 TTCCGGCTGCTTGCTGCTA 62.253 57.895 20.43 7.31 46.34 3.49
4508 5121 4.648626 TTCCGGCTGCTTGCTGCT 62.649 61.111 20.43 0.00 46.34 4.24
4509 5122 4.112341 CTTCCGGCTGCTTGCTGC 62.112 66.667 14.62 14.62 46.34 5.25
4540 5156 5.862323 CCAAAGCAGAATCTTGTTCTGAATG 59.138 40.000 18.93 13.32 46.57 2.67
4588 5207 6.878317 AGAGTAATTCTAGTGCAAGTGCATA 58.122 36.000 9.56 2.82 43.49 3.14
4590 5209 5.152623 AGAGTAATTCTAGTGCAAGTGCA 57.847 39.130 0.82 0.82 41.02 4.57
4591 5210 5.672321 GCAAGAGTAATTCTAGTGCAAGTGC 60.672 44.000 0.00 0.00 36.57 4.40
4592 5211 5.641209 AGCAAGAGTAATTCTAGTGCAAGTG 59.359 40.000 0.00 0.00 38.04 3.16
4593 5212 5.799213 AGCAAGAGTAATTCTAGTGCAAGT 58.201 37.500 0.00 0.00 38.04 3.16
4595 5214 6.568462 GCAAAGCAAGAGTAATTCTAGTGCAA 60.568 38.462 0.00 0.00 38.04 4.08
4596 5215 5.106555 GCAAAGCAAGAGTAATTCTAGTGCA 60.107 40.000 0.00 0.00 38.04 4.57
4597 5216 5.123027 AGCAAAGCAAGAGTAATTCTAGTGC 59.877 40.000 0.00 0.00 34.14 4.40
4598 5217 6.183360 GGAGCAAAGCAAGAGTAATTCTAGTG 60.183 42.308 0.00 0.00 34.14 2.74
4599 5218 5.877564 GGAGCAAAGCAAGAGTAATTCTAGT 59.122 40.000 0.00 0.00 34.14 2.57
4600 5219 5.877012 TGGAGCAAAGCAAGAGTAATTCTAG 59.123 40.000 0.00 0.00 34.14 2.43
4656 5284 0.760945 TAGCTAGCAAGAGGGGCCTC 60.761 60.000 18.83 0.00 43.03 4.70
4658 5286 1.751563 CTAGCTAGCAAGAGGGGCC 59.248 63.158 18.83 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.