Multiple sequence alignment - TraesCS3A01G280800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G280800 chr3A 100.000 2811 0 0 1 2811 509799976 509797166 0.000000e+00 5192.0
1 TraesCS3A01G280800 chr3A 83.333 102 17 0 1329 1430 428569856 428569755 8.290000e-16 95.3
2 TraesCS3A01G280800 chr3A 87.143 70 8 1 1959 2028 692988013 692987945 8.350000e-11 78.7
3 TraesCS3A01G280800 chr3D 88.566 1583 111 35 1277 2806 388534188 388532623 0.000000e+00 1857.0
4 TraesCS3A01G280800 chr3D 88.227 739 41 25 525 1245 388534967 388534257 0.000000e+00 841.0
5 TraesCS3A01G280800 chr3D 85.049 408 29 19 51 433 388535558 388535158 1.220000e-103 387.0
6 TraesCS3A01G280800 chr3D 97.727 44 1 0 447 490 388535077 388535034 3.000000e-10 76.8
7 TraesCS3A01G280800 chr3D 100.000 35 0 0 1 35 388535592 388535558 6.500000e-07 65.8
8 TraesCS3A01G280800 chr3B 88.635 1531 80 39 525 2002 505836798 505835309 0.000000e+00 1777.0
9 TraesCS3A01G280800 chr3B 86.005 736 68 12 2095 2806 505834943 505834219 0.000000e+00 756.0
10 TraesCS3A01G280800 chr3B 87.558 434 24 17 1 412 505837826 505837401 2.530000e-130 475.0
11 TraesCS3A01G280800 chr3B 81.081 185 31 4 1050 1232 799860575 799860393 8.120000e-31 145.0
12 TraesCS3A01G280800 chr3B 100.000 38 0 0 446 483 505836933 505836896 1.400000e-08 71.3
13 TraesCS3A01G280800 chr7A 81.839 446 75 4 2368 2808 721777432 721776988 1.230000e-98 370.0
14 TraesCS3A01G280800 chr7A 80.044 451 80 7 2367 2809 101438984 101438536 2.700000e-85 326.0
15 TraesCS3A01G280800 chr7D 81.778 450 71 8 2367 2806 417607334 417607782 1.590000e-97 366.0
16 TraesCS3A01G280800 chr7D 80.752 452 76 6 2367 2809 369148960 369148511 2.680000e-90 342.0
17 TraesCS3A01G280800 chr7D 87.597 258 32 0 2112 2369 505372473 505372216 1.640000e-77 300.0
18 TraesCS3A01G280800 chr7D 87.356 261 32 1 2102 2362 136920152 136919893 5.890000e-77 298.0
19 TraesCS3A01G280800 chr7D 84.100 239 30 3 2114 2351 505325911 505325680 1.010000e-54 224.0
20 TraesCS3A01G280800 chr2B 81.473 448 68 12 2368 2808 263649242 263649681 1.240000e-93 353.0
21 TraesCS3A01G280800 chr2D 81.069 449 74 7 2369 2806 643188730 643189178 5.760000e-92 348.0
22 TraesCS3A01G280800 chr2D 80.710 451 74 6 2367 2805 155816738 155817187 3.470000e-89 339.0
23 TraesCS3A01G280800 chr2D 85.375 253 36 1 2118 2370 650330332 650330583 7.720000e-66 261.0
24 TraesCS3A01G280800 chr7B 86.989 269 34 1 2102 2370 100354665 100354398 4.550000e-78 302.0
25 TraesCS3A01G280800 chr7B 85.039 254 38 0 2113 2366 707636348 707636095 2.780000e-65 259.0
26 TraesCS3A01G280800 chr7B 78.648 281 55 5 2107 2387 86198472 86198197 6.190000e-42 182.0
27 TraesCS3A01G280800 chr6A 87.008 254 33 0 2117 2370 200925005 200925258 1.270000e-73 287.0
28 TraesCS3A01G280800 chr4A 85.978 271 34 4 2112 2382 729680185 729679919 1.270000e-73 287.0
29 TraesCS3A01G280800 chr4A 80.435 184 36 0 1050 1233 19622495 19622312 1.050000e-29 141.0
30 TraesCS3A01G280800 chr2A 85.375 253 37 0 2112 2364 676175542 676175794 2.150000e-66 263.0
31 TraesCS3A01G280800 chr1A 81.283 187 29 6 1050 1233 550314199 550314016 2.260000e-31 147.0
32 TraesCS3A01G280800 chr1D 81.714 175 26 6 1062 1233 457852038 457851867 1.050000e-29 141.0
33 TraesCS3A01G280800 chr1B 79.126 206 36 7 1050 1251 627929050 627928848 4.880000e-28 135.0
34 TraesCS3A01G280800 chr5A 78.191 188 37 4 1052 1237 581488106 581487921 1.770000e-22 117.0
35 TraesCS3A01G280800 chr5D 77.368 190 39 4 1050 1237 461440808 461440621 2.960000e-20 110.0
36 TraesCS3A01G280800 chr4D 84.615 65 10 0 1959 2023 508223145 508223081 6.500000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G280800 chr3A 509797166 509799976 2810 True 5192.000 5192 100.0000 1 2811 1 chr3A.!!$R2 2810
1 TraesCS3A01G280800 chr3D 388532623 388535592 2969 True 645.520 1857 91.9138 1 2806 5 chr3D.!!$R1 2805
2 TraesCS3A01G280800 chr3B 505834219 505837826 3607 True 769.825 1777 90.5495 1 2806 4 chr3B.!!$R2 2805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 1475 0.179018 ACAGAGAACAAGCCCACACC 60.179 55.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2565 3509 0.036306 GGTTCGGACATGGTGGAGTT 59.964 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 1.115326 GCCCCAACCAGCTGAAAAGT 61.115 55.000 17.39 0.49 0.00 2.66
89 90 1.871772 CTGAAAAGTGCAGCGGAGG 59.128 57.895 0.00 0.00 0.00 4.30
102 115 4.060038 GGAGGAAACGACGCGGGA 62.060 66.667 12.47 0.00 0.00 5.14
154 167 2.639286 CCAGTGCGGTGTTGCTTC 59.361 61.111 0.00 0.00 35.36 3.86
157 170 2.904866 GTGCGGTGTTGCTTCCCA 60.905 61.111 0.00 0.00 35.36 4.37
163 176 2.594303 TGTTGCTTCCCACTGGCG 60.594 61.111 0.00 0.00 0.00 5.69
222 235 1.002134 CACCCTGATGGCTCCGTTT 60.002 57.895 0.00 0.00 37.83 3.60
223 236 0.251916 CACCCTGATGGCTCCGTTTA 59.748 55.000 0.00 0.00 37.83 2.01
310 323 0.944311 CCGTCGTGGTCTTTGAGTGG 60.944 60.000 0.00 0.00 0.00 4.00
317 330 3.120199 CGTGGTCTTTGAGTGGCTTTATG 60.120 47.826 0.00 0.00 0.00 1.90
318 331 2.819608 TGGTCTTTGAGTGGCTTTATGC 59.180 45.455 0.00 0.00 41.94 3.14
328 344 3.633986 AGTGGCTTTATGCTCCTATTTGC 59.366 43.478 0.00 0.00 42.39 3.68
335 351 5.818136 TTATGCTCCTATTTGCTTGACAC 57.182 39.130 0.00 0.00 0.00 3.67
337 353 2.289382 TGCTCCTATTTGCTTGACACGA 60.289 45.455 0.00 0.00 0.00 4.35
338 354 2.742053 GCTCCTATTTGCTTGACACGAA 59.258 45.455 0.00 0.00 0.00 3.85
339 355 3.375299 GCTCCTATTTGCTTGACACGAAT 59.625 43.478 0.00 0.00 0.00 3.34
340 356 4.728882 GCTCCTATTTGCTTGACACGAATG 60.729 45.833 0.00 0.00 0.00 2.67
353 376 2.314647 CGAATGGCGACGTGTTGGT 61.315 57.895 0.00 0.00 44.57 3.67
355 378 0.949105 GAATGGCGACGTGTTGGTCT 60.949 55.000 0.00 0.00 34.75 3.85
357 380 0.949105 ATGGCGACGTGTTGGTCTTC 60.949 55.000 0.00 0.00 34.75 2.87
380 403 2.365617 AGTCGTGGAAGCTTTGAAGAGA 59.634 45.455 0.00 0.00 0.00 3.10
381 404 3.007398 AGTCGTGGAAGCTTTGAAGAGAT 59.993 43.478 0.00 0.00 0.00 2.75
382 405 3.124297 GTCGTGGAAGCTTTGAAGAGATG 59.876 47.826 0.00 0.00 0.00 2.90
413 436 1.905637 CGCCCCTTCTTGTTTAAGGT 58.094 50.000 0.00 0.00 41.72 3.50
433 823 0.319813 AAAATCCACAGCAAAGCGGC 60.320 50.000 0.00 0.00 0.00 6.53
434 824 2.476534 AAATCCACAGCAAAGCGGCG 62.477 55.000 0.51 0.51 39.27 6.46
495 981 3.436001 CCTGTTACAGGTAGCACCG 57.564 57.895 22.37 0.00 45.82 4.94
497 983 1.480954 CCTGTTACAGGTAGCACCGAT 59.519 52.381 22.37 0.00 45.82 4.18
499 985 1.897133 TGTTACAGGTAGCACCGATGT 59.103 47.619 0.00 0.00 44.90 3.06
502 988 2.890808 ACAGGTAGCACCGATGTATG 57.109 50.000 0.00 0.00 44.90 2.39
503 989 1.202533 ACAGGTAGCACCGATGTATGC 60.203 52.381 0.00 0.00 44.90 3.14
510 996 2.561569 GCACCGATGTATGCTTAACCT 58.438 47.619 0.00 0.00 38.84 3.50
511 997 2.287915 GCACCGATGTATGCTTAACCTG 59.712 50.000 0.00 0.00 38.84 4.00
513 999 3.938963 CACCGATGTATGCTTAACCTGTT 59.061 43.478 0.00 0.00 0.00 3.16
514 1000 5.113383 CACCGATGTATGCTTAACCTGTTA 58.887 41.667 0.00 0.00 0.00 2.41
515 1001 5.006358 CACCGATGTATGCTTAACCTGTTAC 59.994 44.000 0.00 0.00 0.00 2.50
516 1002 5.113383 CCGATGTATGCTTAACCTGTTACA 58.887 41.667 0.00 0.00 0.00 2.41
517 1003 5.234329 CCGATGTATGCTTAACCTGTTACAG 59.766 44.000 5.22 5.22 0.00 2.74
528 1014 3.895232 CCTGTTACAGGTAGCACAGAT 57.105 47.619 22.37 0.00 45.82 2.90
533 1053 5.208890 TGTTACAGGTAGCACAGATATCCT 58.791 41.667 0.00 0.00 0.00 3.24
554 1074 4.991056 CCTGTAAATATCGTAGCACTGCAT 59.009 41.667 3.30 0.00 0.00 3.96
586 1106 2.029743 AAAGGCGAGCGCTTTTGAA 58.970 47.368 21.28 0.00 46.19 2.69
604 1124 0.465705 AACGGAGATGCCATGACGAT 59.534 50.000 0.00 0.00 35.94 3.73
605 1125 1.328279 ACGGAGATGCCATGACGATA 58.672 50.000 0.00 0.00 35.94 2.92
606 1126 1.270826 ACGGAGATGCCATGACGATAG 59.729 52.381 0.00 0.00 38.52 2.08
608 1128 1.895798 GGAGATGCCATGACGATAGGA 59.104 52.381 0.00 0.00 37.14 2.94
612 1132 1.332195 TGCCATGACGATAGGAGAGG 58.668 55.000 0.00 0.00 43.77 3.69
614 1134 0.242286 CCATGACGATAGGAGAGGCG 59.758 60.000 0.00 0.00 43.77 5.52
632 1152 2.725815 GCACAACGCTTTCCACGC 60.726 61.111 0.00 0.00 37.77 5.34
675 1195 0.713883 CGACAAACACCGAATCCTCG 59.286 55.000 0.00 0.00 45.02 4.63
689 1209 1.019278 TCCTCGCAAAATCTCGCACC 61.019 55.000 0.00 0.00 0.00 5.01
719 1239 2.176546 CCACATCACCGCGCAAAG 59.823 61.111 8.75 0.00 0.00 2.77
760 1280 2.342650 CCCATGGCGTGAACCCAAG 61.343 63.158 6.09 0.00 35.67 3.61
766 1286 2.203280 CGTGAACCCAAGCACCCA 60.203 61.111 0.00 0.00 0.00 4.51
768 1288 1.388065 CGTGAACCCAAGCACCCAAA 61.388 55.000 0.00 0.00 0.00 3.28
769 1289 0.827368 GTGAACCCAAGCACCCAAAA 59.173 50.000 0.00 0.00 0.00 2.44
771 1291 2.122768 TGAACCCAAGCACCCAAAAAT 58.877 42.857 0.00 0.00 0.00 1.82
772 1292 2.158842 TGAACCCAAGCACCCAAAAATG 60.159 45.455 0.00 0.00 0.00 2.32
774 1294 1.843206 ACCCAAGCACCCAAAAATGTT 59.157 42.857 0.00 0.00 0.00 2.71
775 1295 3.041946 ACCCAAGCACCCAAAAATGTTA 58.958 40.909 0.00 0.00 0.00 2.41
776 1296 3.181459 ACCCAAGCACCCAAAAATGTTAC 60.181 43.478 0.00 0.00 0.00 2.50
778 1298 3.056304 CAAGCACCCAAAAATGTTACCG 58.944 45.455 0.00 0.00 0.00 4.02
779 1299 1.000394 AGCACCCAAAAATGTTACCGC 60.000 47.619 0.00 0.00 0.00 5.68
781 1301 0.970640 ACCCAAAAATGTTACCGCCC 59.029 50.000 0.00 0.00 0.00 6.13
783 1303 0.969894 CCAAAAATGTTACCGCCCCA 59.030 50.000 0.00 0.00 0.00 4.96
784 1304 1.552792 CCAAAAATGTTACCGCCCCAT 59.447 47.619 0.00 0.00 0.00 4.00
785 1305 2.418060 CCAAAAATGTTACCGCCCCATC 60.418 50.000 0.00 0.00 0.00 3.51
787 1307 2.452600 AAATGTTACCGCCCCATCAT 57.547 45.000 0.00 0.00 0.00 2.45
789 1309 1.140312 ATGTTACCGCCCCATCATCT 58.860 50.000 0.00 0.00 0.00 2.90
790 1310 0.180171 TGTTACCGCCCCATCATCTG 59.820 55.000 0.00 0.00 0.00 2.90
791 1311 0.180406 GTTACCGCCCCATCATCTGT 59.820 55.000 0.00 0.00 0.00 3.41
792 1312 0.468226 TTACCGCCCCATCATCTGTC 59.532 55.000 0.00 0.00 0.00 3.51
793 1313 0.689412 TACCGCCCCATCATCTGTCA 60.689 55.000 0.00 0.00 0.00 3.58
794 1314 1.224315 CCGCCCCATCATCTGTCAA 59.776 57.895 0.00 0.00 0.00 3.18
795 1315 0.394216 CCGCCCCATCATCTGTCAAA 60.394 55.000 0.00 0.00 0.00 2.69
842 1366 4.109050 GCGCAGAGGCAGATATATACTTC 58.891 47.826 0.30 0.00 41.24 3.01
843 1367 4.142271 GCGCAGAGGCAGATATATACTTCT 60.142 45.833 0.30 0.00 41.24 2.85
844 1368 5.577835 CGCAGAGGCAGATATATACTTCTC 58.422 45.833 0.00 0.00 41.24 2.87
845 1369 5.356751 CGCAGAGGCAGATATATACTTCTCT 59.643 44.000 0.00 0.00 41.24 3.10
846 1370 6.458206 CGCAGAGGCAGATATATACTTCTCTC 60.458 46.154 0.00 0.00 41.24 3.20
847 1371 6.603201 GCAGAGGCAGATATATACTTCTCTCT 59.397 42.308 0.00 0.00 40.72 3.10
864 1392 4.342378 TCTCTCTTATAAAGCATCACCGCT 59.658 41.667 0.00 0.00 46.67 5.52
869 1397 0.179111 TAAAGCATCACCGCTCGGAG 60.179 55.000 15.95 7.40 42.89 4.63
893 1425 0.721154 AATATCTGCGCACACACACG 59.279 50.000 5.66 0.00 0.00 4.49
899 1431 4.936248 CGCACACACACGCGTTGG 62.936 66.667 10.22 7.28 46.23 3.77
900 1432 3.871574 GCACACACACGCGTTGGT 61.872 61.111 10.22 8.09 0.00 3.67
901 1433 2.526993 GCACACACACGCGTTGGTA 61.527 57.895 10.22 0.00 0.00 3.25
933 1467 1.694150 TGACTCCCCACAGAGAACAAG 59.306 52.381 0.00 0.00 37.33 3.16
934 1468 0.398318 ACTCCCCACAGAGAACAAGC 59.602 55.000 0.00 0.00 37.33 4.01
935 1469 0.322008 CTCCCCACAGAGAACAAGCC 60.322 60.000 0.00 0.00 35.82 4.35
936 1470 1.303643 CCCCACAGAGAACAAGCCC 60.304 63.158 0.00 0.00 0.00 5.19
937 1471 1.455849 CCCACAGAGAACAAGCCCA 59.544 57.895 0.00 0.00 0.00 5.36
939 1473 0.179020 CCACAGAGAACAAGCCCACA 60.179 55.000 0.00 0.00 0.00 4.17
940 1474 0.947244 CACAGAGAACAAGCCCACAC 59.053 55.000 0.00 0.00 0.00 3.82
941 1475 0.179018 ACAGAGAACAAGCCCACACC 60.179 55.000 0.00 0.00 0.00 4.16
942 1476 1.071471 AGAGAACAAGCCCACACCG 59.929 57.895 0.00 0.00 0.00 4.94
943 1477 1.070786 GAGAACAAGCCCACACCGA 59.929 57.895 0.00 0.00 0.00 4.69
944 1478 1.227853 AGAACAAGCCCACACCGAC 60.228 57.895 0.00 0.00 0.00 4.79
945 1479 2.203294 AACAAGCCCACACCGACC 60.203 61.111 0.00 0.00 0.00 4.79
946 1480 2.951475 GAACAAGCCCACACCGACCA 62.951 60.000 0.00 0.00 0.00 4.02
947 1481 2.669569 CAAGCCCACACCGACCAG 60.670 66.667 0.00 0.00 0.00 4.00
948 1482 2.847234 AAGCCCACACCGACCAGA 60.847 61.111 0.00 0.00 0.00 3.86
949 1483 2.883828 AAGCCCACACCGACCAGAG 61.884 63.158 0.00 0.00 0.00 3.35
951 1485 4.742201 CCCACACCGACCAGAGCG 62.742 72.222 0.00 0.00 0.00 5.03
981 1533 0.746923 GCGGCTTCCTTATCCGGTTT 60.747 55.000 0.00 0.00 43.11 3.27
995 1547 1.607251 CCGGTTTGTAGCCTCTTCGTT 60.607 52.381 0.00 0.00 0.00 3.85
996 1548 1.459592 CGGTTTGTAGCCTCTTCGTTG 59.540 52.381 0.00 0.00 0.00 4.10
997 1549 2.490991 GGTTTGTAGCCTCTTCGTTGT 58.509 47.619 0.00 0.00 0.00 3.32
1238 1790 3.012518 AGCTCAACACCTACGTACGTAT 58.987 45.455 26.98 11.96 0.00 3.06
1252 1816 1.296145 CGTATGCACGCGCTCTTTG 60.296 57.895 5.73 0.00 42.05 2.77
1253 1817 1.787847 GTATGCACGCGCTCTTTGT 59.212 52.632 5.73 0.00 39.64 2.83
1254 1818 0.996462 GTATGCACGCGCTCTTTGTA 59.004 50.000 5.73 0.00 39.64 2.41
1255 1819 1.593006 GTATGCACGCGCTCTTTGTAT 59.407 47.619 5.73 4.04 39.64 2.29
1256 1820 0.374758 ATGCACGCGCTCTTTGTATG 59.625 50.000 5.73 0.00 39.64 2.39
1258 1822 0.442310 GCACGCGCTCTTTGTATGAA 59.558 50.000 5.73 0.00 34.30 2.57
1259 1823 1.062587 GCACGCGCTCTTTGTATGAAT 59.937 47.619 5.73 0.00 34.30 2.57
1260 1824 2.284150 GCACGCGCTCTTTGTATGAATA 59.716 45.455 5.73 0.00 34.30 1.75
1272 1854 8.250143 TCTTTGTATGAATATACTCTGCTCCA 57.750 34.615 0.00 0.00 39.90 3.86
1273 1855 8.704668 TCTTTGTATGAATATACTCTGCTCCAA 58.295 33.333 0.00 0.00 39.90 3.53
1280 1862 3.749665 ATACTCTGCTCCAATCAGCTC 57.250 47.619 0.00 0.00 40.39 4.09
1281 1863 1.570803 ACTCTGCTCCAATCAGCTCT 58.429 50.000 0.00 0.00 40.39 4.09
1282 1864 1.481772 ACTCTGCTCCAATCAGCTCTC 59.518 52.381 0.00 0.00 40.39 3.20
1283 1865 0.459078 TCTGCTCCAATCAGCTCTCG 59.541 55.000 0.00 0.00 40.39 4.04
1284 1866 0.459078 CTGCTCCAATCAGCTCTCGA 59.541 55.000 0.00 0.00 40.39 4.04
1309 1904 1.373570 GTTGTGCTCATACCTGCTCC 58.626 55.000 0.00 0.00 0.00 4.70
1311 1906 0.618680 TGTGCTCATACCTGCTCCCT 60.619 55.000 0.00 0.00 0.00 4.20
1432 2027 0.667487 TCGTGCGCAAGAAGAAGAGG 60.667 55.000 23.78 0.00 43.02 3.69
1459 2069 2.493973 GAGCTGTGCGAGGAGGAG 59.506 66.667 0.00 0.00 0.00 3.69
1536 2146 2.364842 GGAGGAGGAGCTGCAGGA 60.365 66.667 17.12 0.00 0.00 3.86
1663 2273 2.932194 AAGGAGGAGCTGGCTGCA 60.932 61.111 18.84 0.00 45.94 4.41
1833 2443 1.202817 GACCTTGGGAGTCGAGAGTTC 59.797 57.143 0.00 0.00 0.00 3.01
1843 2453 5.310451 GGAGTCGAGAGTTCATAGATAGGT 58.690 45.833 0.00 0.00 0.00 3.08
1844 2454 5.180492 GGAGTCGAGAGTTCATAGATAGGTG 59.820 48.000 0.00 0.00 0.00 4.00
1845 2455 5.686753 AGTCGAGAGTTCATAGATAGGTGT 58.313 41.667 0.00 0.00 0.00 4.16
1846 2456 6.828788 AGTCGAGAGTTCATAGATAGGTGTA 58.171 40.000 0.00 0.00 0.00 2.90
1847 2457 6.707161 AGTCGAGAGTTCATAGATAGGTGTAC 59.293 42.308 0.00 0.00 0.00 2.90
1893 2515 9.211485 GGTGTTTATGTATGTACAGTGTACTTT 57.789 33.333 28.78 19.98 39.92 2.66
1954 2577 3.309296 CCATAGTAGTCACTCCACCCAT 58.691 50.000 0.00 0.00 36.14 4.00
1970 2593 6.013379 TCCACCCATGAGTTTTAGCATTTAA 58.987 36.000 0.00 0.00 0.00 1.52
2012 2636 5.545335 TGGCCTCATATGTATCTGAGTTCAT 59.455 40.000 3.32 0.00 37.73 2.57
2024 2648 5.475273 TCTGAGTTCATCGATGCATTTTC 57.525 39.130 20.81 12.85 0.00 2.29
2028 2652 3.629398 AGTTCATCGATGCATTTTCCCTC 59.371 43.478 20.81 0.00 0.00 4.30
2037 2661 0.614697 CATTTTCCCTCCACCCACCC 60.615 60.000 0.00 0.00 0.00 4.61
2039 2663 2.962825 TTTTCCCTCCACCCACCCCT 62.963 60.000 0.00 0.00 0.00 4.79
2040 2664 3.883822 TTCCCTCCACCCACCCCTC 62.884 68.421 0.00 0.00 0.00 4.30
2041 2665 4.675303 CCCTCCACCCACCCCTCA 62.675 72.222 0.00 0.00 0.00 3.86
2042 2666 3.330720 CCTCCACCCACCCCTCAC 61.331 72.222 0.00 0.00 0.00 3.51
2044 2668 3.869934 TCCACCCACCCCTCACCT 61.870 66.667 0.00 0.00 0.00 4.00
2045 2669 3.330720 CCACCCACCCCTCACCTC 61.331 72.222 0.00 0.00 0.00 3.85
2046 2670 2.203998 CACCCACCCCTCACCTCT 60.204 66.667 0.00 0.00 0.00 3.69
2047 2671 2.122954 ACCCACCCCTCACCTCTC 59.877 66.667 0.00 0.00 0.00 3.20
2048 2672 2.122729 CCCACCCCTCACCTCTCA 59.877 66.667 0.00 0.00 0.00 3.27
2049 2673 1.307343 CCCACCCCTCACCTCTCAT 60.307 63.158 0.00 0.00 0.00 2.90
2058 2682 2.036217 CCTCACCTCTCATCTCTCATGC 59.964 54.545 0.00 0.00 0.00 4.06
2091 2715 1.386533 AAGAGCATGCCGGAAATCTG 58.613 50.000 15.66 0.00 0.00 2.90
2092 2716 1.099879 AGAGCATGCCGGAAATCTGC 61.100 55.000 15.66 0.53 0.00 4.26
2093 2717 2.068277 GAGCATGCCGGAAATCTGCC 62.068 60.000 15.66 0.00 33.34 4.85
2146 3043 1.704387 TTGCGCCGCACATCTACATG 61.704 55.000 13.21 0.00 38.71 3.21
2156 3053 4.439153 CGCACATCTACATGCCTCAAATTT 60.439 41.667 0.00 0.00 38.69 1.82
2170 3067 5.402398 CCTCAAATTTCGTTCCTCAAATCC 58.598 41.667 0.00 0.00 0.00 3.01
2173 3070 6.389091 TCAAATTTCGTTCCTCAAATCCATG 58.611 36.000 0.00 0.00 0.00 3.66
2178 3075 3.763360 TCGTTCCTCAAATCCATGCAATT 59.237 39.130 0.00 0.00 0.00 2.32
2285 3182 6.938030 AGACATGCCAAAATGAAATCAATGTT 59.062 30.769 0.00 0.00 0.00 2.71
2318 3241 0.252421 TGGCCTCAGATCACTGACCT 60.252 55.000 3.32 0.00 46.55 3.85
2379 3323 3.104766 CGTCATGCCCATGCTCAC 58.895 61.111 3.41 0.00 38.65 3.51
2395 3339 3.292936 ACTCACGCCCGAACGAGT 61.293 61.111 4.02 0.98 36.70 4.18
2416 3360 0.249073 GCGGCGAGTCACATACATCT 60.249 55.000 12.98 0.00 0.00 2.90
2418 3362 2.351835 GCGGCGAGTCACATACATCTAT 60.352 50.000 12.98 0.00 0.00 1.98
2421 3365 3.058155 GGCGAGTCACATACATCTATCGT 60.058 47.826 0.00 0.00 0.00 3.73
2439 3383 3.189376 TTGGCATCTGCGTGGGTGA 62.189 57.895 0.00 0.00 43.26 4.02
2450 3394 0.250295 CGTGGGTGAAAAGCTCTCCA 60.250 55.000 0.00 0.00 39.16 3.86
2459 3403 2.315720 AAAGCTCTCCAAAATGGCCT 57.684 45.000 3.32 0.00 37.47 5.19
2482 3426 0.249238 CGCCTCGAATTCTCCTCTGG 60.249 60.000 3.52 0.00 0.00 3.86
2490 3434 1.600058 ATTCTCCTCTGGCCCAATGA 58.400 50.000 0.00 0.00 0.00 2.57
2500 3444 1.002624 GCCCAATGAGGTCGGACAA 60.003 57.895 10.76 0.00 34.66 3.18
2501 3445 0.394352 GCCCAATGAGGTCGGACAAT 60.394 55.000 10.76 0.00 34.66 2.71
2502 3446 1.955208 GCCCAATGAGGTCGGACAATT 60.955 52.381 10.76 4.05 34.66 2.32
2535 3479 1.069935 GCTCGGATAGAAGGGGTGC 59.930 63.158 0.00 0.00 0.00 5.01
2543 3487 2.252012 TAGAAGGGGTGCGGGGATCT 62.252 60.000 0.00 0.00 0.00 2.75
2554 3498 3.515286 GGGATCTGGACGCGACGA 61.515 66.667 15.93 2.08 0.00 4.20
2561 3505 2.202453 GGACGCGACGAAGGAGAC 60.202 66.667 15.93 0.00 0.00 3.36
2563 3507 1.081641 GACGCGACGAAGGAGACAA 60.082 57.895 15.93 0.00 0.00 3.18
2565 3509 1.371267 CGCGACGAAGGAGACAACA 60.371 57.895 0.00 0.00 0.00 3.33
2566 3510 0.937699 CGCGACGAAGGAGACAACAA 60.938 55.000 0.00 0.00 0.00 2.83
2618 3565 1.450491 CTCCCTCTCTCGCTGTCGA 60.450 63.158 0.00 0.00 43.28 4.20
2681 3628 4.373116 GCTGACGAAGGGACGCCA 62.373 66.667 0.00 0.00 36.70 5.69
2809 3756 3.948719 GTGAGGGTCCGGGCACAA 61.949 66.667 12.87 0.00 0.00 3.33
2810 3757 3.636231 TGAGGGTCCGGGCACAAG 61.636 66.667 12.87 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 2.357034 GTCGTTTCCTCCGCTGCA 60.357 61.111 0.00 0.00 0.00 4.41
101 114 3.948086 CTCCACGCTCGACCACGTC 62.948 68.421 0.75 0.00 41.32 4.34
102 115 4.039357 CTCCACGCTCGACCACGT 62.039 66.667 0.00 0.00 44.75 4.49
136 149 3.542629 GAAGCAACACCGCACTGGC 62.543 63.158 0.00 0.00 43.94 4.85
139 152 2.594592 GGGAAGCAACACCGCACT 60.595 61.111 0.00 0.00 0.00 4.40
222 235 2.762360 CGCCTTGATCCAAAGCGTA 58.238 52.632 12.79 0.00 45.46 4.42
223 236 3.578456 CGCCTTGATCCAAAGCGT 58.422 55.556 12.79 0.00 45.46 5.07
260 273 4.056050 GTTGAAGTGTAGACCATTCGTGT 58.944 43.478 0.00 0.00 0.00 4.49
310 323 5.163622 TGTCAAGCAAATAGGAGCATAAAGC 60.164 40.000 0.00 0.00 46.19 3.51
317 330 2.346803 TCGTGTCAAGCAAATAGGAGC 58.653 47.619 0.00 0.00 0.00 4.70
318 331 4.201851 CCATTCGTGTCAAGCAAATAGGAG 60.202 45.833 0.00 0.00 0.00 3.69
328 344 1.282248 ACGTCGCCATTCGTGTCAAG 61.282 55.000 0.00 0.00 38.85 3.02
335 351 2.222953 GACCAACACGTCGCCATTCG 62.223 60.000 0.00 0.00 40.15 3.34
337 353 0.534203 AAGACCAACACGTCGCCATT 60.534 50.000 0.00 0.00 37.85 3.16
338 354 0.949105 GAAGACCAACACGTCGCCAT 60.949 55.000 0.00 0.00 37.85 4.40
339 355 1.593209 GAAGACCAACACGTCGCCA 60.593 57.895 0.00 0.00 37.85 5.69
340 356 2.315386 GGAAGACCAACACGTCGCC 61.315 63.158 0.00 0.00 37.85 5.54
343 366 1.499049 GACTGGAAGACCAACACGTC 58.501 55.000 0.00 0.00 46.32 4.34
357 380 1.532868 CTTCAAAGCTTCCACGACTGG 59.467 52.381 0.00 0.00 39.23 4.00
371 394 2.354704 CCAGGTACGGCATCTCTTCAAA 60.355 50.000 0.00 0.00 0.00 2.69
413 436 1.067915 GCCGCTTTGCTGTGGATTTTA 60.068 47.619 8.33 0.00 39.82 1.52
433 823 0.040067 GGTGAAACTTGAAGGCTGCG 60.040 55.000 0.00 0.00 36.74 5.18
434 824 1.268079 GAGGTGAAACTTGAAGGCTGC 59.732 52.381 0.00 0.00 36.74 5.25
435 825 2.551459 CAGAGGTGAAACTTGAAGGCTG 59.449 50.000 0.00 0.00 36.74 4.85
437 827 1.268079 GCAGAGGTGAAACTTGAAGGC 59.732 52.381 0.00 0.00 36.74 4.35
439 829 3.470709 TCAGCAGAGGTGAAACTTGAAG 58.529 45.455 0.00 0.00 37.11 3.02
440 830 3.558931 TCAGCAGAGGTGAAACTTGAA 57.441 42.857 0.00 0.00 37.11 2.69
441 831 3.558931 TTCAGCAGAGGTGAAACTTGA 57.441 42.857 8.96 0.00 45.12 3.02
490 976 2.287915 CAGGTTAAGCATACATCGGTGC 59.712 50.000 7.52 0.00 41.57 5.01
491 977 3.531538 ACAGGTTAAGCATACATCGGTG 58.468 45.455 7.52 0.00 0.00 4.94
492 978 3.906720 ACAGGTTAAGCATACATCGGT 57.093 42.857 7.52 0.00 0.00 4.69
495 981 6.604735 CCTGTAACAGGTTAAGCATACATC 57.395 41.667 7.52 0.00 45.82 3.06
508 994 9.557589 CAGGATATCTGTGCTACCTGTAACAGG 62.558 48.148 0.00 0.00 45.91 4.00
509 995 5.303078 AGGATATCTGTGCTACCTGTAACAG 59.697 44.000 2.05 3.72 41.11 3.16
510 996 5.069119 CAGGATATCTGTGCTACCTGTAACA 59.931 44.000 2.05 0.00 39.68 2.41
511 997 5.533482 CAGGATATCTGTGCTACCTGTAAC 58.467 45.833 2.05 0.00 39.68 2.50
525 1011 8.462811 CAGTGCTACGATATTTACAGGATATCT 58.537 37.037 2.05 0.00 35.36 1.98
526 1012 7.221067 GCAGTGCTACGATATTTACAGGATATC 59.779 40.741 8.18 0.00 34.58 1.63
527 1013 7.036220 GCAGTGCTACGATATTTACAGGATAT 58.964 38.462 8.18 0.00 0.00 1.63
528 1014 6.015772 TGCAGTGCTACGATATTTACAGGATA 60.016 38.462 17.60 0.00 0.00 2.59
533 1053 5.905480 CATGCAGTGCTACGATATTTACA 57.095 39.130 17.60 0.00 0.00 2.41
572 1092 2.499732 CCGTTCAAAAGCGCTCGC 60.500 61.111 12.06 6.09 42.33 5.03
586 1106 1.270826 CTATCGTCATGGCATCTCCGT 59.729 52.381 0.00 0.00 37.80 4.69
604 1124 2.978824 GTTGTGCCGCCTCTCCTA 59.021 61.111 0.00 0.00 0.00 2.94
605 1125 4.379243 CGTTGTGCCGCCTCTCCT 62.379 66.667 0.00 0.00 0.00 3.69
675 1195 1.154225 CGGTGGTGCGAGATTTTGC 60.154 57.895 0.00 0.00 0.00 3.68
719 1239 0.963355 TAACAAATGGAGGCACCCGC 60.963 55.000 0.00 0.00 38.00 6.13
723 1243 0.170339 GCGGTAACAAATGGAGGCAC 59.830 55.000 0.00 0.00 0.00 5.01
750 1270 0.827368 TTTTGGGTGCTTGGGTTCAC 59.173 50.000 0.00 0.00 0.00 3.18
758 1278 2.547007 GCGGTAACATTTTTGGGTGCTT 60.547 45.455 0.00 0.00 0.00 3.91
760 1280 1.424403 GCGGTAACATTTTTGGGTGC 58.576 50.000 0.00 0.00 0.00 5.01
766 1286 2.530701 TGATGGGGCGGTAACATTTTT 58.469 42.857 0.00 0.00 0.00 1.94
768 1288 2.091885 AGATGATGGGGCGGTAACATTT 60.092 45.455 0.00 0.00 0.00 2.32
769 1289 1.494721 AGATGATGGGGCGGTAACATT 59.505 47.619 0.00 0.00 0.00 2.71
771 1291 0.180171 CAGATGATGGGGCGGTAACA 59.820 55.000 0.00 0.00 0.00 2.41
772 1292 0.180406 ACAGATGATGGGGCGGTAAC 59.820 55.000 0.00 0.00 0.00 2.50
774 1294 0.689412 TGACAGATGATGGGGCGGTA 60.689 55.000 0.00 0.00 0.00 4.02
775 1295 1.561769 TTGACAGATGATGGGGCGGT 61.562 55.000 0.00 0.00 0.00 5.68
776 1296 0.394216 TTTGACAGATGATGGGGCGG 60.394 55.000 0.00 0.00 0.00 6.13
778 1298 1.106285 GGTTTGACAGATGATGGGGC 58.894 55.000 0.00 0.00 0.00 5.80
779 1299 1.065491 TCGGTTTGACAGATGATGGGG 60.065 52.381 0.00 0.00 0.00 4.96
842 1366 4.626042 AGCGGTGATGCTTTATAAGAGAG 58.374 43.478 0.00 0.00 44.46 3.20
843 1367 4.672587 AGCGGTGATGCTTTATAAGAGA 57.327 40.909 0.00 0.00 44.46 3.10
864 1392 0.318699 CGCAGATATTTCGCCTCCGA 60.319 55.000 0.00 0.00 42.66 4.55
885 1413 0.385029 TACTACCAACGCGTGTGTGT 59.615 50.000 14.98 15.19 41.58 3.72
887 1415 0.038892 CCTACTACCAACGCGTGTGT 60.039 55.000 14.98 16.08 0.00 3.72
893 1425 1.823610 ACTCCTTCCTACTACCAACGC 59.176 52.381 0.00 0.00 0.00 4.84
934 1468 4.742201 CGCTCTGGTCGGTGTGGG 62.742 72.222 0.00 0.00 0.00 4.61
935 1469 4.742201 CCGCTCTGGTCGGTGTGG 62.742 72.222 0.00 0.00 41.85 4.17
936 1470 4.742201 CCCGCTCTGGTCGGTGTG 62.742 72.222 0.66 0.00 45.09 3.82
937 1471 4.988716 TCCCGCTCTGGTCGGTGT 62.989 66.667 0.66 0.00 45.09 4.16
941 1475 4.504916 CTGCTCCCGCTCTGGTCG 62.505 72.222 0.00 0.00 36.97 4.79
942 1476 4.828925 GCTGCTCCCGCTCTGGTC 62.829 72.222 0.00 0.00 36.97 4.02
945 1479 4.869440 CTCGCTGCTCCCGCTCTG 62.869 72.222 0.00 0.00 36.97 3.35
981 1533 1.334160 TGGACAACGAAGAGGCTACA 58.666 50.000 0.00 0.00 0.00 2.74
995 1547 1.296392 CACTCGCTTCCCATGGACA 59.704 57.895 15.22 0.00 0.00 4.02
996 1548 2.109126 GCACTCGCTTCCCATGGAC 61.109 63.158 15.22 0.00 34.30 4.02
997 1549 2.123248 TTGCACTCGCTTCCCATGGA 62.123 55.000 15.22 0.00 39.64 3.41
1238 1790 0.669012 TCATACAAAGAGCGCGTGCA 60.669 50.000 24.79 0.00 46.23 4.57
1250 1814 8.650490 TGATTGGAGCAGAGTATATTCATACAA 58.350 33.333 0.00 0.00 39.69 2.41
1252 1816 7.277539 GCTGATTGGAGCAGAGTATATTCATAC 59.722 40.741 0.00 0.00 38.95 2.39
1253 1817 7.179872 AGCTGATTGGAGCAGAGTATATTCATA 59.820 37.037 0.00 0.00 41.83 2.15
1254 1818 6.013553 AGCTGATTGGAGCAGAGTATATTCAT 60.014 38.462 0.00 0.00 41.83 2.57
1255 1819 5.306419 AGCTGATTGGAGCAGAGTATATTCA 59.694 40.000 0.00 0.00 41.83 2.57
1256 1820 5.792741 AGCTGATTGGAGCAGAGTATATTC 58.207 41.667 0.00 0.00 41.83 1.75
1258 1822 5.085920 AGAGCTGATTGGAGCAGAGTATAT 58.914 41.667 0.00 0.00 41.83 0.86
1259 1823 4.478203 AGAGCTGATTGGAGCAGAGTATA 58.522 43.478 0.00 0.00 41.83 1.47
1260 1824 3.307506 AGAGCTGATTGGAGCAGAGTAT 58.692 45.455 0.00 0.00 41.83 2.12
1272 1854 1.261480 ACCACAGTCGAGAGCTGATT 58.739 50.000 8.38 0.00 38.20 2.57
1273 1855 1.067283 CAACCACAGTCGAGAGCTGAT 60.067 52.381 8.38 0.00 38.20 2.90
1280 1862 0.249447 TGAGCACAACCACAGTCGAG 60.249 55.000 0.00 0.00 0.00 4.04
1281 1863 0.392706 ATGAGCACAACCACAGTCGA 59.607 50.000 0.00 0.00 0.00 4.20
1282 1864 1.726791 GTATGAGCACAACCACAGTCG 59.273 52.381 0.00 0.00 0.00 4.18
1283 1865 2.076863 GGTATGAGCACAACCACAGTC 58.923 52.381 9.44 0.00 33.28 3.51
1284 1866 1.699634 AGGTATGAGCACAACCACAGT 59.300 47.619 14.36 0.00 35.64 3.55
1309 1904 2.156917 TGAGATCAAAGCAGCAACAGG 58.843 47.619 0.00 0.00 0.00 4.00
1311 1906 2.156917 CCTGAGATCAAAGCAGCAACA 58.843 47.619 0.00 0.00 0.00 3.33
1474 2084 4.451150 TGCACCGCCTGGATCGTC 62.451 66.667 0.00 0.00 39.21 4.20
1536 2146 3.005539 AGAGCCTGCGGTCCATGT 61.006 61.111 0.00 0.00 37.19 3.21
1843 2453 3.994204 ACATCACACGTGTACAGTACA 57.006 42.857 22.90 9.51 36.08 2.90
1844 2454 5.428770 CAAAACATCACACGTGTACAGTAC 58.571 41.667 22.90 3.49 0.00 2.73
1845 2455 4.508492 CCAAAACATCACACGTGTACAGTA 59.492 41.667 22.90 5.12 0.00 2.74
1846 2456 3.311322 CCAAAACATCACACGTGTACAGT 59.689 43.478 22.90 16.28 0.00 3.55
1847 2457 3.311322 ACCAAAACATCACACGTGTACAG 59.689 43.478 22.90 15.61 0.00 2.74
1893 2515 3.642078 CAACTATGCCGAGGGGGA 58.358 61.111 0.00 0.00 38.47 4.81
1999 2623 6.536731 AAATGCATCGATGAACTCAGATAC 57.463 37.500 29.20 7.44 0.00 2.24
2002 2626 4.333649 GGAAAATGCATCGATGAACTCAGA 59.666 41.667 29.20 3.27 0.00 3.27
2004 2628 3.378112 GGGAAAATGCATCGATGAACTCA 59.622 43.478 29.20 16.83 0.00 3.41
2012 2636 1.681780 GGTGGAGGGAAAATGCATCGA 60.682 52.381 0.00 0.00 0.00 3.59
2024 2648 4.675303 TGAGGGGTGGGTGGAGGG 62.675 72.222 0.00 0.00 0.00 4.30
2028 2652 3.330720 GAGGTGAGGGGTGGGTGG 61.331 72.222 0.00 0.00 0.00 4.61
2037 2661 2.036217 GCATGAGAGATGAGAGGTGAGG 59.964 54.545 0.00 0.00 0.00 3.86
2039 2663 2.957680 GAGCATGAGAGATGAGAGGTGA 59.042 50.000 0.00 0.00 0.00 4.02
2040 2664 2.694109 TGAGCATGAGAGATGAGAGGTG 59.306 50.000 0.00 0.00 0.00 4.00
2041 2665 2.960384 CTGAGCATGAGAGATGAGAGGT 59.040 50.000 0.00 0.00 0.00 3.85
2042 2666 2.288579 GCTGAGCATGAGAGATGAGAGG 60.289 54.545 0.00 0.00 0.00 3.69
2044 2668 2.624364 GAGCTGAGCATGAGAGATGAGA 59.376 50.000 7.39 0.00 0.00 3.27
2045 2669 2.362717 TGAGCTGAGCATGAGAGATGAG 59.637 50.000 7.39 0.00 0.00 2.90
2046 2670 2.385803 TGAGCTGAGCATGAGAGATGA 58.614 47.619 7.39 0.00 0.00 2.92
2047 2671 2.892784 TGAGCTGAGCATGAGAGATG 57.107 50.000 7.39 0.00 0.00 2.90
2048 2672 5.748670 AATATGAGCTGAGCATGAGAGAT 57.251 39.130 7.39 0.00 0.00 2.75
2049 2673 5.548181 AAATATGAGCTGAGCATGAGAGA 57.452 39.130 7.39 0.00 0.00 3.10
2093 2717 0.250901 GCAGGCACATGTATAGGGGG 60.251 60.000 0.00 0.00 0.00 5.40
2146 3043 3.915437 TTGAGGAACGAAATTTGAGGC 57.085 42.857 0.00 0.00 0.00 4.70
2156 3053 2.488204 TGCATGGATTTGAGGAACGA 57.512 45.000 0.00 0.00 0.00 3.85
2178 3075 2.861462 TGTATGATCGACGTGCATGA 57.139 45.000 14.17 0.00 0.00 3.07
2285 3182 4.492160 GCCATCCGTCACGCTCGA 62.492 66.667 0.00 0.00 0.00 4.04
2335 3258 0.172578 CCTGGAGCACGACGTATTCA 59.827 55.000 0.00 0.00 0.00 2.57
2379 3323 2.049433 AACTCGTTCGGGCGTGAG 60.049 61.111 8.15 0.00 34.65 3.51
2395 3339 0.108377 ATGTATGTGACTCGCCGCAA 60.108 50.000 0.00 0.00 0.00 4.85
2416 3360 0.809636 CCACGCAGATGCCAACGATA 60.810 55.000 0.00 0.00 37.91 2.92
2418 3362 2.741985 CCACGCAGATGCCAACGA 60.742 61.111 0.00 0.00 37.91 3.85
2421 3365 2.672651 CACCCACGCAGATGCCAA 60.673 61.111 0.00 0.00 37.91 4.52
2439 3383 2.613129 AGGCCATTTTGGAGAGCTTTT 58.387 42.857 5.01 0.00 40.96 2.27
2459 3403 1.948145 GAGGAGAATTCGAGGCGACTA 59.052 52.381 0.00 0.00 44.43 2.59
2482 3426 0.394352 ATTGTCCGACCTCATTGGGC 60.394 55.000 0.00 0.00 41.70 5.36
2535 3479 4.570663 GTCGCGTCCAGATCCCCG 62.571 72.222 5.77 0.00 0.00 5.73
2543 3487 2.670592 TCTCCTTCGTCGCGTCCA 60.671 61.111 5.77 0.00 0.00 4.02
2546 3490 1.371389 GTTGTCTCCTTCGTCGCGT 60.371 57.895 5.77 0.00 0.00 6.01
2561 3505 0.874390 CGGACATGGTGGAGTTGTTG 59.126 55.000 0.00 0.00 0.00 3.33
2563 3507 0.762418 TTCGGACATGGTGGAGTTGT 59.238 50.000 0.00 0.00 0.00 3.32
2565 3509 0.036306 GGTTCGGACATGGTGGAGTT 59.964 55.000 0.00 0.00 0.00 3.01
2566 3510 0.836400 AGGTTCGGACATGGTGGAGT 60.836 55.000 0.00 0.00 0.00 3.85
2599 3543 1.450491 CGACAGCGAGAGAGGGAGA 60.450 63.158 0.00 0.00 40.82 3.71
2681 3628 4.379243 CAGCCTGCCTCGTCCGTT 62.379 66.667 0.00 0.00 0.00 4.44
2762 3709 1.688772 CCTTGCTCCCAATCCTCATG 58.311 55.000 0.00 0.00 0.00 3.07
2763 3710 0.554792 CCCTTGCTCCCAATCCTCAT 59.445 55.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.