Multiple sequence alignment - TraesCS3A01G280000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G280000 chr3A 100.000 3851 0 0 1 3851 509378717 509374867 0.000000e+00 7112.0
1 TraesCS3A01G280000 chr3A 86.566 1526 185 14 932 2451 509251777 509250266 0.000000e+00 1664.0
2 TraesCS3A01G280000 chr3A 90.196 204 11 4 254 448 727177696 727177899 1.370000e-64 257.0
3 TraesCS3A01G280000 chr3A 93.452 168 10 1 282 448 567436644 567436811 8.260000e-62 248.0
4 TraesCS3A01G280000 chr3A 97.368 38 1 0 159 196 32872347 32872384 8.930000e-07 65.8
5 TraesCS3A01G280000 chr3D 92.999 3028 157 30 492 3487 388326341 388323337 0.000000e+00 4366.0
6 TraesCS3A01G280000 chr3D 88.630 1460 155 7 992 2450 388313597 388312148 0.000000e+00 1766.0
7 TraesCS3A01G280000 chr3D 90.549 656 61 1 2832 3487 11607195 11607849 0.000000e+00 867.0
8 TraesCS3A01G280000 chr3D 92.603 365 26 1 3488 3851 388323290 388322926 1.230000e-144 523.0
9 TraesCS3A01G280000 chr3D 74.956 571 120 19 1750 2304 17342357 17341794 1.380000e-59 241.0
10 TraesCS3A01G280000 chr3D 85.930 199 22 4 254 451 45405403 45405210 1.400000e-49 207.0
11 TraesCS3A01G280000 chr3D 80.843 261 44 6 1943 2200 17699239 17699496 2.350000e-47 200.0
12 TraesCS3A01G280000 chr3D 80.992 121 19 4 2018 2136 565820810 565820928 4.100000e-15 93.5
13 TraesCS3A01G280000 chr3D 89.655 58 1 1 164 216 70233887 70233830 6.900000e-08 69.4
14 TraesCS3A01G280000 chr3D 84.848 66 5 3 151 216 501069855 501069795 1.160000e-05 62.1
15 TraesCS3A01G280000 chr3D 100.000 29 0 0 168 196 567162972 567163000 2.000000e-03 54.7
16 TraesCS3A01G280000 chr3B 94.630 1583 60 5 827 2385 504962207 504960626 0.000000e+00 2429.0
17 TraesCS3A01G280000 chr3B 86.645 1505 184 12 951 2451 503968642 503970133 0.000000e+00 1650.0
18 TraesCS3A01G280000 chr3B 90.909 649 58 1 2832 3480 188470172 188470819 0.000000e+00 870.0
19 TraesCS3A01G280000 chr3B 90.673 654 60 1 2832 3485 389762827 389762175 0.000000e+00 869.0
20 TraesCS3A01G280000 chr3B 92.562 363 26 1 3490 3851 826434121 826433759 1.590000e-143 520.0
21 TraesCS3A01G280000 chr3B 90.698 301 18 7 492 790 504962504 504962212 3.610000e-105 392.0
22 TraesCS3A01G280000 chr3B 74.144 584 121 26 1751 2313 24901939 24901365 8.380000e-52 215.0
23 TraesCS3A01G280000 chr5B 90.854 656 59 1 2832 3487 44442 43788 0.000000e+00 878.0
24 TraesCS3A01G280000 chr5B 86.547 223 21 3 254 467 346502579 346502801 1.790000e-58 237.0
25 TraesCS3A01G280000 chr5B 87.440 207 17 3 254 451 477556129 477555923 2.990000e-56 230.0
26 TraesCS3A01G280000 chr5B 85.202 223 24 5 254 467 639733074 639732852 1.800000e-53 220.0
27 TraesCS3A01G280000 chr5B 80.672 119 21 2 2018 2135 420185882 420185999 1.470000e-14 91.6
28 TraesCS3A01G280000 chr1D 90.701 656 60 1 2832 3487 303072741 303073395 0.000000e+00 872.0
29 TraesCS3A01G280000 chr1D 92.562 363 26 1 3490 3851 303073444 303073806 1.590000e-143 520.0
30 TraesCS3A01G280000 chr1D 87.912 182 21 1 285 465 285778416 285778597 3.010000e-51 213.0
31 TraesCS3A01G280000 chr1D 73.355 608 137 22 1750 2349 436113583 436114173 6.520000e-48 202.0
32 TraesCS3A01G280000 chr1D 93.182 44 3 0 2056 2099 355669477 355669520 8.930000e-07 65.8
33 TraesCS3A01G280000 chr7B 90.909 649 58 1 2832 3480 648722977 648722330 0.000000e+00 870.0
34 TraesCS3A01G280000 chr7B 90.520 654 61 1 2832 3485 214992375 214991723 0.000000e+00 863.0
35 TraesCS3A01G280000 chr7B 94.595 37 2 0 156 192 595431826 595431790 1.490000e-04 58.4
36 TraesCS3A01G280000 chr6D 90.396 656 62 1 2832 3487 440670342 440670996 0.000000e+00 861.0
37 TraesCS3A01G280000 chr6D 92.562 363 26 1 3490 3851 51403567 51403929 1.590000e-143 520.0
38 TraesCS3A01G280000 chr6D 87.192 203 15 5 254 446 99228499 99228700 1.800000e-53 220.0
39 TraesCS3A01G280000 chr6D 95.455 44 2 0 2056 2099 37116745 37116702 1.920000e-08 71.3
40 TraesCS3A01G280000 chr6A 92.837 363 25 1 3490 3851 27704870 27704508 3.410000e-145 525.0
41 TraesCS3A01G280000 chr6A 92.857 168 11 1 282 448 9015949 9016116 3.840000e-60 243.0
42 TraesCS3A01G280000 chr6A 100.000 28 0 0 194 221 503431334 503431361 7.000000e-03 52.8
43 TraesCS3A01G280000 chr4D 92.837 363 25 1 3490 3851 31189436 31189798 3.410000e-145 525.0
44 TraesCS3A01G280000 chr4D 88.235 204 15 3 254 448 332376326 332376529 6.430000e-58 235.0
45 TraesCS3A01G280000 chr2D 92.837 363 25 1 3490 3851 536468840 536469202 3.410000e-145 525.0
46 TraesCS3A01G280000 chr2D 92.562 363 26 1 3490 3851 229815301 229814939 1.590000e-143 520.0
47 TraesCS3A01G280000 chr2D 89.604 202 18 3 250 448 452248565 452248766 1.780000e-63 254.0
48 TraesCS3A01G280000 chr2D 88.235 204 15 3 254 448 427310177 427310380 6.430000e-58 235.0
49 TraesCS3A01G280000 chr2D 86.408 206 20 6 254 451 72994182 72993977 6.480000e-53 219.0
50 TraesCS3A01G280000 chr2D 92.857 56 4 0 161 216 85756817 85756872 8.870000e-12 82.4
51 TraesCS3A01G280000 chr1B 92.562 363 26 1 3490 3851 629507463 629507101 1.590000e-143 520.0
52 TraesCS3A01G280000 chr1B 76.817 509 108 10 1750 2253 589897729 589897226 1.050000e-70 278.0
53 TraesCS3A01G280000 chr1B 91.515 165 13 1 285 448 448988580 448988416 3.870000e-55 226.0
54 TraesCS3A01G280000 chr1B 86.667 195 19 5 254 447 475815113 475814925 3.900000e-50 209.0
55 TraesCS3A01G280000 chr1B 75.623 361 80 8 1949 2305 589977516 589977872 5.120000e-39 172.0
56 TraesCS3A01G280000 chr5A 93.939 165 9 1 285 448 664787341 664787177 8.260000e-62 248.0
57 TraesCS3A01G280000 chr5A 92.857 168 11 1 285 451 19969137 19968970 3.840000e-60 243.0
58 TraesCS3A01G280000 chr5A 87.719 57 2 4 164 219 455969128 455969076 1.160000e-05 62.1
59 TraesCS3A01G280000 chr1A 93.452 168 10 1 285 451 117598698 117598531 8.260000e-62 248.0
60 TraesCS3A01G280000 chr1A 93.452 168 10 1 285 451 117636081 117635914 8.260000e-62 248.0
61 TraesCS3A01G280000 chr1A 92.857 168 11 1 282 448 65654434 65654601 3.840000e-60 243.0
62 TraesCS3A01G280000 chr1A 92.857 168 11 1 285 451 117565171 117565004 3.840000e-60 243.0
63 TraesCS3A01G280000 chr1A 92.262 168 12 1 285 451 247782679 247782512 1.790000e-58 237.0
64 TraesCS3A01G280000 chr1A 76.995 426 81 12 1752 2164 110283560 110283139 1.080000e-55 228.0
65 TraesCS3A01G280000 chr1A 80.085 236 43 4 1949 2182 533324348 533324581 5.120000e-39 172.0
66 TraesCS3A01G280000 chr2A 88.406 207 15 5 254 451 737792809 737792603 1.380000e-59 241.0
67 TraesCS3A01G280000 chr2A 87.981 208 16 7 254 452 100831961 100831754 1.790000e-58 237.0
68 TraesCS3A01G280000 chr2A 71.617 532 130 18 1752 2271 105408175 105408697 4.040000e-25 126.0
69 TraesCS3A01G280000 chr2A 88.333 60 3 3 157 216 44178206 44178261 6.900000e-08 69.4
70 TraesCS3A01G280000 chr2A 97.368 38 1 0 159 196 498847035 498847072 8.930000e-07 65.8
71 TraesCS3A01G280000 chr7D 87.923 207 16 3 254 451 42618582 42618376 6.430000e-58 235.0
72 TraesCS3A01G280000 chr7D 86.700 203 19 5 254 448 562658224 562658426 6.480000e-53 219.0
73 TraesCS3A01G280000 chr7D 87.302 63 8 0 2037 2099 123157890 123157952 5.340000e-09 73.1
74 TraesCS3A01G280000 chrUn 87.440 207 17 3 254 451 87719836 87719630 2.990000e-56 230.0
75 TraesCS3A01G280000 chrUn 90.909 165 14 1 285 448 208668207 208668371 1.800000e-53 220.0
76 TraesCS3A01G280000 chrUn 90.909 165 14 1 285 448 256167868 256168032 1.800000e-53 220.0
77 TraesCS3A01G280000 chrUn 90.909 165 14 1 285 448 275352916 275352752 1.800000e-53 220.0
78 TraesCS3A01G280000 chrUn 90.909 165 14 1 285 448 361993991 361993827 1.800000e-53 220.0
79 TraesCS3A01G280000 chrUn 90.909 165 14 1 285 448 366688827 366688663 1.800000e-53 220.0
80 TraesCS3A01G280000 chrUn 90.909 165 14 1 285 448 369807741 369807905 1.800000e-53 220.0
81 TraesCS3A01G280000 chrUn 90.909 165 14 1 285 448 382060386 382060550 1.800000e-53 220.0
82 TraesCS3A01G280000 chrUn 84.951 206 18 8 254 448 31477284 31477487 3.040000e-46 196.0
83 TraesCS3A01G280000 chrUn 84.946 186 22 5 266 448 305249117 305249299 2.360000e-42 183.0
84 TraesCS3A01G280000 chr5D 87.143 210 18 6 254 454 28425065 28424856 2.990000e-56 230.0
85 TraesCS3A01G280000 chr5D 94.340 53 3 0 164 216 5599746 5599694 8.870000e-12 82.4
86 TraesCS3A01G280000 chr4B 87.317 205 16 4 254 448 462206394 462206190 3.870000e-55 226.0
87 TraesCS3A01G280000 chr4B 90.909 165 14 1 285 448 74685989 74686153 1.800000e-53 220.0
88 TraesCS3A01G280000 chr6B 87.755 196 18 5 254 448 678598328 678598518 1.390000e-54 224.0
89 TraesCS3A01G280000 chr4A 97.436 39 1 0 178 216 698257930 698257968 2.480000e-07 67.6
90 TraesCS3A01G280000 chr2B 97.368 38 1 0 159 196 74045185 74045222 8.930000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G280000 chr3A 509374867 509378717 3850 True 7112.0 7112 100.0000 1 3851 1 chr3A.!!$R2 3850
1 TraesCS3A01G280000 chr3A 509250266 509251777 1511 True 1664.0 1664 86.5660 932 2451 1 chr3A.!!$R1 1519
2 TraesCS3A01G280000 chr3D 388322926 388326341 3415 True 2444.5 4366 92.8010 492 3851 2 chr3D.!!$R6 3359
3 TraesCS3A01G280000 chr3D 388312148 388313597 1449 True 1766.0 1766 88.6300 992 2450 1 chr3D.!!$R4 1458
4 TraesCS3A01G280000 chr3D 11607195 11607849 654 False 867.0 867 90.5490 2832 3487 1 chr3D.!!$F1 655
5 TraesCS3A01G280000 chr3D 17341794 17342357 563 True 241.0 241 74.9560 1750 2304 1 chr3D.!!$R1 554
6 TraesCS3A01G280000 chr3B 503968642 503970133 1491 False 1650.0 1650 86.6450 951 2451 1 chr3B.!!$F2 1500
7 TraesCS3A01G280000 chr3B 504960626 504962504 1878 True 1410.5 2429 92.6640 492 2385 2 chr3B.!!$R4 1893
8 TraesCS3A01G280000 chr3B 188470172 188470819 647 False 870.0 870 90.9090 2832 3480 1 chr3B.!!$F1 648
9 TraesCS3A01G280000 chr3B 389762175 389762827 652 True 869.0 869 90.6730 2832 3485 1 chr3B.!!$R2 653
10 TraesCS3A01G280000 chr3B 24901365 24901939 574 True 215.0 215 74.1440 1751 2313 1 chr3B.!!$R1 562
11 TraesCS3A01G280000 chr5B 43788 44442 654 True 878.0 878 90.8540 2832 3487 1 chr5B.!!$R1 655
12 TraesCS3A01G280000 chr1D 303072741 303073806 1065 False 696.0 872 91.6315 2832 3851 2 chr1D.!!$F4 1019
13 TraesCS3A01G280000 chr1D 436113583 436114173 590 False 202.0 202 73.3550 1750 2349 1 chr1D.!!$F3 599
14 TraesCS3A01G280000 chr7B 648722330 648722977 647 True 870.0 870 90.9090 2832 3480 1 chr7B.!!$R3 648
15 TraesCS3A01G280000 chr7B 214991723 214992375 652 True 863.0 863 90.5200 2832 3485 1 chr7B.!!$R1 653
16 TraesCS3A01G280000 chr6D 440670342 440670996 654 False 861.0 861 90.3960 2832 3487 1 chr6D.!!$F3 655
17 TraesCS3A01G280000 chr1B 589897226 589897729 503 True 278.0 278 76.8170 1750 2253 1 chr1B.!!$R3 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.178767 TCCGCTGAATCCTGGATGTG 59.821 55.0 10.54 4.58 0.00 3.21 F
117 118 0.178767 CGCTGAATCCTGGATGTGGA 59.821 55.0 10.54 0.00 38.06 4.02 F
466 467 0.252513 TCCCACTACAGCCAGCCTAA 60.253 55.0 0.00 0.00 0.00 2.69 F
1719 1749 0.249699 CGCCGGTATACTGCATTGGA 60.250 55.0 1.90 0.00 0.00 3.53 F
2476 2521 0.942410 TAGAAACACACTGCGGACGC 60.942 55.0 10.13 10.13 42.35 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 1596 0.453282 TGCGTAAGACGTACACGAGC 60.453 55.000 17.20 7.21 44.73 5.03 R
1707 1737 1.004277 ACCAACGGTCCAATGCAGTAT 59.996 47.619 0.00 0.00 0.00 2.12 R
2398 2443 1.132834 GCATCAATCGTGCATGGTTGA 59.867 47.619 31.26 31.26 42.08 3.18 R
2542 2589 0.762418 TCTTCCGGCTCAGTTTTCCA 59.238 50.000 0.00 0.00 0.00 3.53 R
3607 3722 2.705658 TCCAGGATTAGCCATGTACCTG 59.294 50.000 0.00 0.00 42.82 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.516578 ACCGCAGTCTTGTTCTAGC 57.483 52.632 0.00 0.00 0.00 3.42
19 20 0.388649 ACCGCAGTCTTGTTCTAGCG 60.389 55.000 0.00 0.00 44.24 4.26
22 23 0.985549 GCAGTCTTGTTCTAGCGACG 59.014 55.000 0.00 0.00 0.00 5.12
23 24 0.985549 CAGTCTTGTTCTAGCGACGC 59.014 55.000 13.03 13.03 0.00 5.19
24 25 0.596577 AGTCTTGTTCTAGCGACGCA 59.403 50.000 23.70 7.20 0.00 5.24
25 26 1.202582 AGTCTTGTTCTAGCGACGCAT 59.797 47.619 23.70 9.74 0.00 4.73
26 27 1.993370 GTCTTGTTCTAGCGACGCATT 59.007 47.619 23.70 4.49 0.00 3.56
27 28 1.992667 TCTTGTTCTAGCGACGCATTG 59.007 47.619 23.70 11.28 0.00 2.82
28 29 1.992667 CTTGTTCTAGCGACGCATTGA 59.007 47.619 23.70 13.49 0.00 2.57
29 30 1.346365 TGTTCTAGCGACGCATTGAC 58.654 50.000 23.70 14.92 0.00 3.18
30 31 0.645868 GTTCTAGCGACGCATTGACC 59.354 55.000 23.70 5.61 0.00 4.02
31 32 0.245266 TTCTAGCGACGCATTGACCA 59.755 50.000 23.70 0.17 0.00 4.02
32 33 0.459899 TCTAGCGACGCATTGACCAT 59.540 50.000 23.70 0.31 0.00 3.55
33 34 1.134818 TCTAGCGACGCATTGACCATT 60.135 47.619 23.70 0.00 0.00 3.16
34 35 1.258982 CTAGCGACGCATTGACCATTC 59.741 52.381 23.70 0.00 0.00 2.67
35 36 0.673333 AGCGACGCATTGACCATTCA 60.673 50.000 23.70 0.00 0.00 2.57
36 37 0.378257 GCGACGCATTGACCATTCAT 59.622 50.000 16.42 0.00 0.00 2.57
37 38 1.857204 GCGACGCATTGACCATTCATG 60.857 52.381 16.42 0.00 0.00 3.07
57 58 3.604582 TGGTACATGCATTTCGATGTGA 58.395 40.909 0.00 0.00 34.60 3.58
58 59 4.198530 TGGTACATGCATTTCGATGTGAT 58.801 39.130 0.00 0.00 34.60 3.06
59 60 4.639755 TGGTACATGCATTTCGATGTGATT 59.360 37.500 0.00 0.00 34.60 2.57
60 61 5.207768 GGTACATGCATTTCGATGTGATTC 58.792 41.667 0.00 0.00 34.60 2.52
61 62 5.008019 GGTACATGCATTTCGATGTGATTCT 59.992 40.000 0.00 0.00 34.60 2.40
62 63 5.571784 ACATGCATTTCGATGTGATTCTT 57.428 34.783 0.00 0.00 31.47 2.52
63 64 6.682423 ACATGCATTTCGATGTGATTCTTA 57.318 33.333 0.00 0.00 31.47 2.10
64 65 7.268199 ACATGCATTTCGATGTGATTCTTAT 57.732 32.000 0.00 0.00 31.47 1.73
65 66 8.382030 ACATGCATTTCGATGTGATTCTTATA 57.618 30.769 0.00 0.00 31.47 0.98
66 67 9.006839 ACATGCATTTCGATGTGATTCTTATAT 57.993 29.630 0.00 0.00 31.47 0.86
67 68 9.836076 CATGCATTTCGATGTGATTCTTATATT 57.164 29.630 0.00 0.00 0.00 1.28
75 76 9.489084 TCGATGTGATTCTTATATTAACCCTTG 57.511 33.333 0.00 0.00 0.00 3.61
76 77 9.273016 CGATGTGATTCTTATATTAACCCTTGT 57.727 33.333 0.00 0.00 0.00 3.16
92 93 7.907841 AACCCTTGTATTTAAAGTCCTTTGT 57.092 32.000 2.57 0.00 34.23 2.83
93 94 8.999905 AACCCTTGTATTTAAAGTCCTTTGTA 57.000 30.769 2.57 0.00 34.23 2.41
94 95 8.400184 ACCCTTGTATTTAAAGTCCTTTGTAC 57.600 34.615 2.57 4.42 34.23 2.90
95 96 8.222637 ACCCTTGTATTTAAAGTCCTTTGTACT 58.777 33.333 2.57 0.00 34.23 2.73
96 97 9.074576 CCCTTGTATTTAAAGTCCTTTGTACTT 57.925 33.333 2.57 0.00 38.82 2.24
99 100 8.314143 TGTATTTAAAGTCCTTTGTACTTCCG 57.686 34.615 2.57 0.00 36.17 4.30
100 101 5.678132 TTTAAAGTCCTTTGTACTTCCGC 57.322 39.130 2.57 0.00 36.17 5.54
101 102 3.487120 AAAGTCCTTTGTACTTCCGCT 57.513 42.857 0.00 0.00 36.17 5.52
102 103 2.457366 AGTCCTTTGTACTTCCGCTG 57.543 50.000 0.00 0.00 0.00 5.18
103 104 1.968493 AGTCCTTTGTACTTCCGCTGA 59.032 47.619 0.00 0.00 0.00 4.26
104 105 2.367567 AGTCCTTTGTACTTCCGCTGAA 59.632 45.455 0.00 0.00 0.00 3.02
105 106 3.008049 AGTCCTTTGTACTTCCGCTGAAT 59.992 43.478 0.00 0.00 0.00 2.57
106 107 3.371285 GTCCTTTGTACTTCCGCTGAATC 59.629 47.826 0.00 0.00 0.00 2.52
107 108 2.678336 CCTTTGTACTTCCGCTGAATCC 59.322 50.000 0.00 0.00 0.00 3.01
108 109 3.600388 CTTTGTACTTCCGCTGAATCCT 58.400 45.455 0.00 0.00 0.00 3.24
109 110 2.672961 TGTACTTCCGCTGAATCCTG 57.327 50.000 0.00 0.00 0.00 3.86
110 111 1.207089 TGTACTTCCGCTGAATCCTGG 59.793 52.381 0.00 0.00 0.00 4.45
111 112 1.480954 GTACTTCCGCTGAATCCTGGA 59.519 52.381 0.00 0.00 0.00 3.86
112 113 1.207791 ACTTCCGCTGAATCCTGGAT 58.792 50.000 2.57 2.57 0.00 3.41
113 114 1.134280 ACTTCCGCTGAATCCTGGATG 60.134 52.381 10.54 0.00 0.00 3.51
114 115 0.911769 TTCCGCTGAATCCTGGATGT 59.088 50.000 10.54 0.42 0.00 3.06
115 116 0.178767 TCCGCTGAATCCTGGATGTG 59.821 55.000 10.54 4.58 0.00 3.21
116 117 0.816825 CCGCTGAATCCTGGATGTGG 60.817 60.000 10.54 10.11 0.00 4.17
117 118 0.178767 CGCTGAATCCTGGATGTGGA 59.821 55.000 10.54 0.00 38.06 4.02
118 119 1.202734 CGCTGAATCCTGGATGTGGAT 60.203 52.381 10.54 0.00 45.41 3.41
119 120 2.502295 GCTGAATCCTGGATGTGGATC 58.498 52.381 10.54 4.17 42.93 3.36
120 121 2.106166 GCTGAATCCTGGATGTGGATCT 59.894 50.000 10.54 0.00 42.93 2.75
121 122 3.434739 GCTGAATCCTGGATGTGGATCTT 60.435 47.826 10.54 0.00 42.93 2.40
122 123 4.789807 CTGAATCCTGGATGTGGATCTTT 58.210 43.478 10.54 0.00 42.93 2.52
123 124 5.197224 TGAATCCTGGATGTGGATCTTTT 57.803 39.130 10.54 0.00 42.93 2.27
124 125 5.582953 TGAATCCTGGATGTGGATCTTTTT 58.417 37.500 10.54 0.00 42.93 1.94
125 126 5.419788 TGAATCCTGGATGTGGATCTTTTTG 59.580 40.000 10.54 0.00 42.93 2.44
126 127 4.656100 TCCTGGATGTGGATCTTTTTGA 57.344 40.909 0.00 0.00 0.00 2.69
127 128 4.996793 TCCTGGATGTGGATCTTTTTGAA 58.003 39.130 0.00 0.00 0.00 2.69
128 129 5.392995 TCCTGGATGTGGATCTTTTTGAAA 58.607 37.500 0.00 0.00 0.00 2.69
129 130 5.837979 TCCTGGATGTGGATCTTTTTGAAAA 59.162 36.000 0.00 0.00 0.00 2.29
130 131 6.497954 TCCTGGATGTGGATCTTTTTGAAAAT 59.502 34.615 0.00 0.00 0.00 1.82
131 132 7.673504 TCCTGGATGTGGATCTTTTTGAAAATA 59.326 33.333 0.00 0.00 0.00 1.40
132 133 8.313292 CCTGGATGTGGATCTTTTTGAAAATAA 58.687 33.333 0.00 0.00 0.00 1.40
133 134 9.880157 CTGGATGTGGATCTTTTTGAAAATAAT 57.120 29.630 0.00 0.00 0.00 1.28
155 156 9.716507 ATAATTCATTTATTACGTCACTGCAAC 57.283 29.630 0.00 0.00 0.00 4.17
156 157 6.546972 TTCATTTATTACGTCACTGCAACA 57.453 33.333 0.00 0.00 0.00 3.33
157 158 6.164408 TCATTTATTACGTCACTGCAACAG 57.836 37.500 0.00 0.00 37.52 3.16
158 159 5.699001 TCATTTATTACGTCACTGCAACAGT 59.301 36.000 0.00 0.00 46.51 3.55
159 160 6.869388 TCATTTATTACGTCACTGCAACAGTA 59.131 34.615 0.00 0.00 43.43 2.74
160 161 7.385478 TCATTTATTACGTCACTGCAACAGTAA 59.615 33.333 0.00 0.00 43.43 2.24
161 162 6.699895 TTATTACGTCACTGCAACAGTAAG 57.300 37.500 0.00 0.00 43.43 2.34
162 163 2.882927 ACGTCACTGCAACAGTAAGA 57.117 45.000 0.00 0.00 43.43 2.10
163 164 2.470821 ACGTCACTGCAACAGTAAGAC 58.529 47.619 0.00 4.33 43.43 3.01
164 165 2.100916 ACGTCACTGCAACAGTAAGACT 59.899 45.455 13.20 2.60 43.43 3.24
168 169 3.118408 TCACTGCAACAGTAAGACTGGTT 60.118 43.478 11.13 1.16 45.36 3.67
169 170 3.002656 CACTGCAACAGTAAGACTGGTTG 59.997 47.826 11.13 12.36 45.36 3.77
170 171 3.206150 CTGCAACAGTAAGACTGGTTGT 58.794 45.455 11.13 0.00 45.36 3.32
171 172 4.141801 ACTGCAACAGTAAGACTGGTTGTA 60.142 41.667 11.13 10.46 45.36 2.41
172 173 4.771903 TGCAACAGTAAGACTGGTTGTAA 58.228 39.130 11.13 4.42 45.36 2.41
173 174 5.373222 TGCAACAGTAAGACTGGTTGTAAT 58.627 37.500 11.13 0.00 45.36 1.89
174 175 5.238432 TGCAACAGTAAGACTGGTTGTAATG 59.762 40.000 11.13 0.00 45.36 1.90
175 176 5.468746 GCAACAGTAAGACTGGTTGTAATGA 59.531 40.000 11.13 0.00 45.36 2.57
176 177 6.017440 GCAACAGTAAGACTGGTTGTAATGAA 60.017 38.462 11.13 0.00 45.36 2.57
177 178 7.576236 CAACAGTAAGACTGGTTGTAATGAAG 58.424 38.462 11.13 0.00 45.36 3.02
178 179 7.441157 CAACAGTAAGACTGGTTGTAATGAAGA 59.559 37.037 11.13 0.00 45.36 2.87
179 180 7.588143 CAGTAAGACTGGTTGTAATGAAGAG 57.412 40.000 0.00 0.00 42.35 2.85
180 181 7.155328 CAGTAAGACTGGTTGTAATGAAGAGT 58.845 38.462 0.00 0.00 42.35 3.24
181 182 8.304596 CAGTAAGACTGGTTGTAATGAAGAGTA 58.695 37.037 0.00 0.00 42.35 2.59
182 183 9.036980 AGTAAGACTGGTTGTAATGAAGAGTAT 57.963 33.333 0.00 0.00 0.00 2.12
183 184 9.303537 GTAAGACTGGTTGTAATGAAGAGTATC 57.696 37.037 0.00 0.00 0.00 2.24
184 185 7.482169 AGACTGGTTGTAATGAAGAGTATCA 57.518 36.000 0.00 0.00 37.82 2.15
185 186 8.083828 AGACTGGTTGTAATGAAGAGTATCAT 57.916 34.615 0.00 0.00 41.74 2.45
186 187 9.201989 AGACTGGTTGTAATGAAGAGTATCATA 57.798 33.333 0.00 0.00 39.08 2.15
187 188 9.988815 GACTGGTTGTAATGAAGAGTATCATAT 57.011 33.333 0.00 0.00 39.08 1.78
234 235 9.479549 TGATACTATATTCTAGGACATGCATGA 57.520 33.333 32.75 9.69 0.00 3.07
238 239 9.486123 ACTATATTCTAGGACATGCATGATACT 57.514 33.333 32.75 25.18 0.00 2.12
241 242 6.976934 TTCTAGGACATGCATGATACTACA 57.023 37.500 32.75 15.10 0.00 2.74
242 243 6.976934 TCTAGGACATGCATGATACTACAA 57.023 37.500 32.75 15.16 0.00 2.41
243 244 6.749139 TCTAGGACATGCATGATACTACAAC 58.251 40.000 32.75 10.93 0.00 3.32
244 245 4.708177 AGGACATGCATGATACTACAACC 58.292 43.478 32.75 17.93 0.00 3.77
245 246 4.164030 AGGACATGCATGATACTACAACCA 59.836 41.667 32.75 0.00 0.00 3.67
246 247 4.512944 GGACATGCATGATACTACAACCAG 59.487 45.833 32.75 1.29 0.00 4.00
247 248 5.357742 ACATGCATGATACTACAACCAGA 57.642 39.130 32.75 0.00 0.00 3.86
248 249 5.363101 ACATGCATGATACTACAACCAGAG 58.637 41.667 32.75 0.18 0.00 3.35
249 250 5.104776 ACATGCATGATACTACAACCAGAGT 60.105 40.000 32.75 0.95 0.00 3.24
250 251 6.098266 ACATGCATGATACTACAACCAGAGTA 59.902 38.462 32.75 0.00 32.86 2.59
251 252 5.902681 TGCATGATACTACAACCAGAGTAC 58.097 41.667 0.00 0.00 31.15 2.73
252 253 5.656859 TGCATGATACTACAACCAGAGTACT 59.343 40.000 0.00 0.00 31.15 2.73
253 254 6.154534 TGCATGATACTACAACCAGAGTACTT 59.845 38.462 0.00 0.00 31.15 2.24
254 255 7.340999 TGCATGATACTACAACCAGAGTACTTA 59.659 37.037 0.00 0.00 31.15 2.24
255 256 8.361139 GCATGATACTACAACCAGAGTACTTAT 58.639 37.037 0.00 0.00 31.15 1.73
256 257 9.684448 CATGATACTACAACCAGAGTACTTATG 57.316 37.037 0.00 0.00 31.15 1.90
257 258 9.642343 ATGATACTACAACCAGAGTACTTATGA 57.358 33.333 9.88 0.00 31.15 2.15
258 259 9.642343 TGATACTACAACCAGAGTACTTATGAT 57.358 33.333 9.88 0.00 31.15 2.45
265 266 9.476928 ACAACCAGAGTACTTATGATACTACTT 57.523 33.333 9.88 0.00 32.93 2.24
280 281 9.616156 ATGATACTACTTATGATACTACCTCCG 57.384 37.037 0.00 0.00 0.00 4.63
281 282 8.600668 TGATACTACTTATGATACTACCTCCGT 58.399 37.037 0.00 0.00 0.00 4.69
288 289 9.970553 ACTTATGATACTACCTCCGTAATATCA 57.029 33.333 4.48 4.48 43.86 2.15
296 297 8.431910 ACTACCTCCGTAATATCATATTTGGT 57.568 34.615 0.00 0.84 0.00 3.67
297 298 9.537852 ACTACCTCCGTAATATCATATTTGGTA 57.462 33.333 0.00 1.83 0.00 3.25
300 301 9.042450 ACCTCCGTAATATCATATTTGGTATCA 57.958 33.333 0.00 0.00 28.63 2.15
326 327 9.910267 ATAGATGACTATATTTATTGCCATGCA 57.090 29.630 0.00 0.00 37.53 3.96
327 328 8.818622 AGATGACTATATTTATTGCCATGCAT 57.181 30.769 0.00 0.00 38.76 3.96
328 329 8.683615 AGATGACTATATTTATTGCCATGCATG 58.316 33.333 20.19 20.19 38.76 4.06
329 330 7.999450 TGACTATATTTATTGCCATGCATGA 57.001 32.000 28.31 8.76 38.76 3.07
330 331 7.819644 TGACTATATTTATTGCCATGCATGAC 58.180 34.615 28.31 17.77 38.76 3.06
331 332 7.447853 TGACTATATTTATTGCCATGCATGACA 59.552 33.333 28.31 20.53 38.76 3.58
332 333 8.357290 ACTATATTTATTGCCATGCATGACAT 57.643 30.769 28.31 17.25 38.76 3.06
333 334 9.465199 ACTATATTTATTGCCATGCATGACATA 57.535 29.630 28.31 16.30 38.76 2.29
336 337 7.956420 ATTTATTGCCATGCATGACATAAAG 57.044 32.000 28.31 10.23 38.76 1.85
337 338 6.468333 TTATTGCCATGCATGACATAAAGT 57.532 33.333 28.31 8.98 38.76 2.66
338 339 7.579761 TTATTGCCATGCATGACATAAAGTA 57.420 32.000 28.31 6.77 38.76 2.24
339 340 5.503662 TTGCCATGCATGACATAAAGTAG 57.496 39.130 28.31 8.01 38.76 2.57
340 341 3.316029 TGCCATGCATGACATAAAGTAGC 59.684 43.478 28.31 17.58 36.64 3.58
341 342 3.316029 GCCATGCATGACATAAAGTAGCA 59.684 43.478 28.31 0.00 36.64 3.49
342 343 4.790766 GCCATGCATGACATAAAGTAGCAC 60.791 45.833 28.31 0.00 36.64 4.40
343 344 4.336153 CCATGCATGACATAAAGTAGCACA 59.664 41.667 28.31 0.00 36.64 4.57
344 345 5.009310 CCATGCATGACATAAAGTAGCACAT 59.991 40.000 28.31 0.00 36.64 3.21
345 346 5.739752 TGCATGACATAAAGTAGCACATC 57.260 39.130 0.00 0.00 30.65 3.06
346 347 5.184711 TGCATGACATAAAGTAGCACATCA 58.815 37.500 0.00 0.00 30.65 3.07
347 348 5.824097 TGCATGACATAAAGTAGCACATCAT 59.176 36.000 0.00 0.00 30.65 2.45
348 349 6.319405 TGCATGACATAAAGTAGCACATCATT 59.681 34.615 0.00 0.00 30.65 2.57
349 350 7.148035 TGCATGACATAAAGTAGCACATCATTT 60.148 33.333 0.00 0.00 30.65 2.32
350 351 8.344831 GCATGACATAAAGTAGCACATCATTTA 58.655 33.333 0.00 0.00 0.00 1.40
361 362 9.371136 AGTAGCACATCATTTAATATGATACGG 57.629 33.333 10.72 6.78 36.69 4.02
362 363 9.151471 GTAGCACATCATTTAATATGATACGGT 57.849 33.333 10.72 11.66 36.69 4.83
364 365 9.890629 AGCACATCATTTAATATGATACGGTAT 57.109 29.630 0.00 0.00 36.69 2.73
386 387 5.826601 TCATGATATGATACTCGAGCCTC 57.173 43.478 13.61 10.08 33.59 4.70
387 388 5.504853 TCATGATATGATACTCGAGCCTCT 58.495 41.667 13.61 0.00 33.59 3.69
388 389 5.588246 TCATGATATGATACTCGAGCCTCTC 59.412 44.000 13.61 4.82 33.59 3.20
389 390 5.172687 TGATATGATACTCGAGCCTCTCT 57.827 43.478 13.61 4.38 0.00 3.10
390 391 5.565509 TGATATGATACTCGAGCCTCTCTT 58.434 41.667 13.61 5.24 0.00 2.85
391 392 6.007076 TGATATGATACTCGAGCCTCTCTTT 58.993 40.000 13.61 0.00 0.00 2.52
392 393 4.846779 ATGATACTCGAGCCTCTCTTTC 57.153 45.455 13.61 0.00 0.00 2.62
393 394 3.892284 TGATACTCGAGCCTCTCTTTCT 58.108 45.455 13.61 0.00 0.00 2.52
394 395 4.274147 TGATACTCGAGCCTCTCTTTCTT 58.726 43.478 13.61 0.00 0.00 2.52
395 396 4.336993 TGATACTCGAGCCTCTCTTTCTTC 59.663 45.833 13.61 0.00 0.00 2.87
396 397 2.520069 ACTCGAGCCTCTCTTTCTTCA 58.480 47.619 13.61 0.00 0.00 3.02
397 398 3.096092 ACTCGAGCCTCTCTTTCTTCAT 58.904 45.455 13.61 0.00 0.00 2.57
398 399 3.513515 ACTCGAGCCTCTCTTTCTTCATT 59.486 43.478 13.61 0.00 0.00 2.57
399 400 4.020662 ACTCGAGCCTCTCTTTCTTCATTT 60.021 41.667 13.61 0.00 0.00 2.32
400 401 5.186021 ACTCGAGCCTCTCTTTCTTCATTTA 59.814 40.000 13.61 0.00 0.00 1.40
401 402 6.037786 TCGAGCCTCTCTTTCTTCATTTAA 57.962 37.500 0.00 0.00 0.00 1.52
402 403 6.644347 TCGAGCCTCTCTTTCTTCATTTAAT 58.356 36.000 0.00 0.00 0.00 1.40
403 404 7.106239 TCGAGCCTCTCTTTCTTCATTTAATT 58.894 34.615 0.00 0.00 0.00 1.40
404 405 7.278868 TCGAGCCTCTCTTTCTTCATTTAATTC 59.721 37.037 0.00 0.00 0.00 2.17
405 406 7.279758 CGAGCCTCTCTTTCTTCATTTAATTCT 59.720 37.037 0.00 0.00 0.00 2.40
406 407 9.606631 GAGCCTCTCTTTCTTCATTTAATTCTA 57.393 33.333 0.00 0.00 0.00 2.10
417 418 9.653287 TCTTCATTTAATTCTATGTCACTTCGT 57.347 29.630 0.00 0.00 0.00 3.85
418 419 9.907576 CTTCATTTAATTCTATGTCACTTCGTC 57.092 33.333 0.00 0.00 0.00 4.20
419 420 8.996024 TCATTTAATTCTATGTCACTTCGTCA 57.004 30.769 0.00 0.00 0.00 4.35
420 421 9.430623 TCATTTAATTCTATGTCACTTCGTCAA 57.569 29.630 0.00 0.00 0.00 3.18
436 437 9.820229 CACTTCGTCAAAATTATTTAGTTAGCA 57.180 29.630 0.00 0.00 0.00 3.49
439 440 8.835467 TCGTCAAAATTATTTAGTTAGCATGC 57.165 30.769 10.51 10.51 0.00 4.06
440 441 8.454894 TCGTCAAAATTATTTAGTTAGCATGCA 58.545 29.630 21.98 2.77 0.00 3.96
441 442 9.236691 CGTCAAAATTATTTAGTTAGCATGCAT 57.763 29.630 21.98 7.68 0.00 3.96
449 450 7.678947 ATTTAGTTAGCATGCATGATACTCC 57.321 36.000 30.64 17.15 0.00 3.85
450 451 4.013267 AGTTAGCATGCATGATACTCCC 57.987 45.455 30.64 14.83 0.00 4.30
451 452 3.392285 AGTTAGCATGCATGATACTCCCA 59.608 43.478 30.64 10.02 0.00 4.37
452 453 2.267174 AGCATGCATGATACTCCCAC 57.733 50.000 30.64 8.88 0.00 4.61
453 454 1.773052 AGCATGCATGATACTCCCACT 59.227 47.619 30.64 11.12 0.00 4.00
454 455 2.974794 AGCATGCATGATACTCCCACTA 59.025 45.455 30.64 0.00 0.00 2.74
455 456 3.070018 GCATGCATGATACTCCCACTAC 58.930 50.000 30.64 3.61 0.00 2.73
456 457 3.494924 GCATGCATGATACTCCCACTACA 60.495 47.826 30.64 0.00 0.00 2.74
457 458 4.313282 CATGCATGATACTCCCACTACAG 58.687 47.826 22.59 0.00 0.00 2.74
458 459 2.103094 TGCATGATACTCCCACTACAGC 59.897 50.000 0.00 0.00 0.00 4.40
459 460 2.548920 GCATGATACTCCCACTACAGCC 60.549 54.545 0.00 0.00 0.00 4.85
460 461 2.543037 TGATACTCCCACTACAGCCA 57.457 50.000 0.00 0.00 0.00 4.75
461 462 2.388735 TGATACTCCCACTACAGCCAG 58.611 52.381 0.00 0.00 0.00 4.85
462 463 1.069358 GATACTCCCACTACAGCCAGC 59.931 57.143 0.00 0.00 0.00 4.85
463 464 0.976073 TACTCCCACTACAGCCAGCC 60.976 60.000 0.00 0.00 0.00 4.85
464 465 1.992277 CTCCCACTACAGCCAGCCT 60.992 63.158 0.00 0.00 0.00 4.58
465 466 0.687757 CTCCCACTACAGCCAGCCTA 60.688 60.000 0.00 0.00 0.00 3.93
466 467 0.252513 TCCCACTACAGCCAGCCTAA 60.253 55.000 0.00 0.00 0.00 2.69
467 468 0.618458 CCCACTACAGCCAGCCTAAA 59.382 55.000 0.00 0.00 0.00 1.85
468 469 1.004277 CCCACTACAGCCAGCCTAAAA 59.996 52.381 0.00 0.00 0.00 1.52
469 470 2.359900 CCACTACAGCCAGCCTAAAAG 58.640 52.381 0.00 0.00 0.00 2.27
470 471 2.290323 CCACTACAGCCAGCCTAAAAGT 60.290 50.000 0.00 0.00 0.00 2.66
471 472 3.412386 CACTACAGCCAGCCTAAAAGTT 58.588 45.455 0.00 0.00 0.00 2.66
472 473 3.189287 CACTACAGCCAGCCTAAAAGTTG 59.811 47.826 0.00 0.00 0.00 3.16
473 474 2.364972 ACAGCCAGCCTAAAAGTTGT 57.635 45.000 0.00 0.00 0.00 3.32
474 475 3.502123 ACAGCCAGCCTAAAAGTTGTA 57.498 42.857 0.00 0.00 0.00 2.41
475 476 3.412386 ACAGCCAGCCTAAAAGTTGTAG 58.588 45.455 0.00 0.00 0.00 2.74
476 477 3.181443 ACAGCCAGCCTAAAAGTTGTAGT 60.181 43.478 0.00 0.00 0.00 2.73
477 478 3.437049 CAGCCAGCCTAAAAGTTGTAGTC 59.563 47.826 0.00 0.00 0.00 2.59
478 479 2.415512 GCCAGCCTAAAAGTTGTAGTCG 59.584 50.000 0.00 0.00 0.00 4.18
479 480 2.415512 CCAGCCTAAAAGTTGTAGTCGC 59.584 50.000 0.00 0.00 0.00 5.19
480 481 3.064207 CAGCCTAAAAGTTGTAGTCGCA 58.936 45.455 0.00 0.00 0.00 5.10
481 482 3.123621 CAGCCTAAAAGTTGTAGTCGCAG 59.876 47.826 0.00 0.00 0.00 5.18
482 483 2.415512 GCCTAAAAGTTGTAGTCGCAGG 59.584 50.000 0.00 0.00 0.00 4.85
483 484 3.863400 GCCTAAAAGTTGTAGTCGCAGGA 60.863 47.826 0.00 0.00 0.00 3.86
484 485 3.927142 CCTAAAAGTTGTAGTCGCAGGAG 59.073 47.826 0.00 0.00 0.00 3.69
485 486 3.470645 AAAAGTTGTAGTCGCAGGAGT 57.529 42.857 0.00 0.00 0.00 3.85
486 487 4.595762 AAAAGTTGTAGTCGCAGGAGTA 57.404 40.909 0.00 0.00 0.00 2.59
487 488 3.572604 AAGTTGTAGTCGCAGGAGTAC 57.427 47.619 2.84 2.84 45.43 2.73
488 489 2.792878 AGTTGTAGTCGCAGGAGTACT 58.207 47.619 0.00 0.00 45.43 2.73
489 490 3.947868 AGTTGTAGTCGCAGGAGTACTA 58.052 45.455 0.00 1.18 45.43 1.82
490 491 4.525024 AGTTGTAGTCGCAGGAGTACTAT 58.475 43.478 0.00 0.00 45.43 2.12
501 502 8.244802 GTCGCAGGAGTACTATGTATCAATAAT 58.755 37.037 0.00 0.00 0.00 1.28
507 508 8.314751 GGAGTACTATGTATCAATAATGGCAGT 58.685 37.037 0.00 0.00 0.00 4.40
543 545 5.428253 GGCATGTGAGTAGGAGAAATGTAA 58.572 41.667 0.00 0.00 0.00 2.41
544 546 5.294552 GGCATGTGAGTAGGAGAAATGTAAC 59.705 44.000 0.00 0.00 0.00 2.50
557 559 1.808411 ATGTAACTTGTGCTCGTGGG 58.192 50.000 0.00 0.00 0.00 4.61
558 560 0.882927 TGTAACTTGTGCTCGTGGGC 60.883 55.000 0.00 0.00 0.00 5.36
559 561 0.602905 GTAACTTGTGCTCGTGGGCT 60.603 55.000 0.00 0.00 0.00 5.19
560 562 0.320421 TAACTTGTGCTCGTGGGCTC 60.320 55.000 0.00 0.00 0.00 4.70
561 563 3.114616 CTTGTGCTCGTGGGCTCG 61.115 66.667 0.00 0.00 0.00 5.03
562 564 3.865929 CTTGTGCTCGTGGGCTCGT 62.866 63.158 0.00 0.00 0.00 4.18
563 565 4.662961 TGTGCTCGTGGGCTCGTG 62.663 66.667 0.00 2.48 0.00 4.35
618 621 2.202756 AAGAAGCCGGCGTCGATC 60.203 61.111 32.01 20.45 39.00 3.69
631 634 1.268794 CGTCGATCCGAAGAGCAGATT 60.269 52.381 0.00 0.00 37.53 2.40
634 637 1.871408 CGATCCGAAGAGCAGATTGGG 60.871 57.143 0.00 0.00 0.00 4.12
638 641 1.139654 CCGAAGAGCAGATTGGGATGA 59.860 52.381 0.00 0.00 0.00 2.92
655 658 2.048503 ACGGAAACTCGCGGGAAG 60.049 61.111 15.95 1.18 0.00 3.46
729 732 3.298619 CACTCTGGATGAGATGAGGACT 58.701 50.000 0.00 0.00 45.39 3.85
770 774 4.988598 CGGCTTCAGGCACCGTGT 62.989 66.667 0.00 0.00 44.01 4.49
805 809 1.136872 GTCGAGATGTGTCGCTGAGC 61.137 60.000 0.00 0.00 39.90 4.26
823 827 1.154131 CTCAGCTCACGGTCTCACG 60.154 63.158 0.00 0.00 40.31 4.35
825 829 1.442857 CAGCTCACGGTCTCACGTC 60.443 63.158 0.00 0.00 46.75 4.34
852 856 1.278985 CATTGCTCTACCAGACCACCA 59.721 52.381 0.00 0.00 0.00 4.17
881 885 3.191162 CCAAATTTGACTGGATTCGAGCA 59.809 43.478 19.86 0.00 34.35 4.26
903 907 2.570302 GGCCACACTATATTATCCCCGT 59.430 50.000 0.00 0.00 0.00 5.28
949 954 0.533531 CAGAGCAGAGGCACAACACA 60.534 55.000 0.00 0.00 44.61 3.72
972 978 3.569194 AACCAACCCAAAACCATTTCC 57.431 42.857 0.00 0.00 0.00 3.13
1431 1461 2.125106 GCCGACCTCGCCATCTTT 60.125 61.111 0.00 0.00 38.18 2.52
1497 1527 1.227380 GCTCGGCGACTCCATCATT 60.227 57.895 4.99 0.00 34.01 2.57
1639 1669 8.438676 AATTCTTATCAATTCCTTCGATTCGT 57.561 30.769 5.89 0.00 0.00 3.85
1645 1675 4.391830 TCAATTCCTTCGATTCGTTGGAAG 59.608 41.667 26.02 18.84 40.14 3.46
1716 1746 1.597027 GCCGCCGGTATACTGCATT 60.597 57.895 4.45 0.00 0.00 3.56
1719 1749 0.249699 CGCCGGTATACTGCATTGGA 60.250 55.000 1.90 0.00 0.00 3.53
1743 1773 2.519780 GTCTCGGGAGGCGGAGAT 60.520 66.667 0.00 0.00 41.04 2.75
1897 1933 2.370849 GAGAGGTTCCTGTGGGTTGTAA 59.629 50.000 0.00 0.00 0.00 2.41
2210 2252 1.686052 GGTGGAGATGAGAGGCTACAG 59.314 57.143 0.00 0.00 0.00 2.74
2418 2463 1.132834 TCAACCATGCACGATTGATGC 59.867 47.619 0.00 0.00 43.68 3.91
2468 2513 9.366216 GTTGGATTTTCTTTTTAGAAACACACT 57.634 29.630 0.11 0.00 37.50 3.55
2470 2515 7.491048 TGGATTTTCTTTTTAGAAACACACTGC 59.509 33.333 0.11 0.00 37.50 4.40
2471 2516 6.862944 TTTTCTTTTTAGAAACACACTGCG 57.137 33.333 0.11 0.00 37.50 5.18
2474 2519 3.955771 TTTTAGAAACACACTGCGGAC 57.044 42.857 0.00 0.00 0.00 4.79
2475 2520 1.493772 TTAGAAACACACTGCGGACG 58.506 50.000 0.00 0.00 0.00 4.79
2476 2521 0.942410 TAGAAACACACTGCGGACGC 60.942 55.000 10.13 10.13 42.35 5.19
2487 2532 1.999051 GCGGACGCACATTACTCAG 59.001 57.895 12.31 0.00 41.49 3.35
2513 2558 7.308589 GGCAAACTTATTCCTATATGAACGCAT 60.309 37.037 0.00 0.00 38.54 4.73
2541 2588 4.823989 GCATCCTGCCTATATGAACACTTT 59.176 41.667 0.00 0.00 37.42 2.66
2542 2589 5.300286 GCATCCTGCCTATATGAACACTTTT 59.700 40.000 0.00 0.00 37.42 2.27
2548 2595 7.309744 CCTGCCTATATGAACACTTTTGGAAAA 60.310 37.037 0.00 0.00 0.00 2.29
2564 2611 1.661112 GAAAACTGAGCCGGAAGATCG 59.339 52.381 5.05 0.00 0.00 3.69
2617 2673 6.304356 CGTAGTCTAACGAATATACCACCA 57.696 41.667 0.00 0.00 45.68 4.17
2629 2685 7.554835 ACGAATATACCACCAAAAAGAATAGCA 59.445 33.333 0.00 0.00 0.00 3.49
2630 2686 8.567948 CGAATATACCACCAAAAAGAATAGCAT 58.432 33.333 0.00 0.00 0.00 3.79
2637 2693 6.644592 CCACCAAAAAGAATAGCATCGAAAAA 59.355 34.615 0.00 0.00 0.00 1.94
2689 2745 5.221501 GCACCCATATGCCAAATCTAACATT 60.222 40.000 0.00 0.00 39.86 2.71
2708 2764 4.777896 ACATTGAGTCTGGGAGCTTAGTTA 59.222 41.667 0.00 0.00 0.00 2.24
2715 2771 5.961421 AGTCTGGGAGCTTAGTTATTTCTCT 59.039 40.000 0.00 0.00 0.00 3.10
2749 2805 5.347342 ACATTACTCTTCAGCAGATTCTCG 58.653 41.667 0.00 0.00 0.00 4.04
2765 2821 1.070134 TCTCGGAACACAAGACCTTGG 59.930 52.381 13.58 5.89 44.45 3.61
2770 2826 2.879026 GGAACACAAGACCTTGGAGAAC 59.121 50.000 13.58 6.14 44.45 3.01
2788 2844 5.698545 GGAGAACACTTCCATAGATACATGC 59.301 44.000 0.00 0.00 34.74 4.06
2796 2852 4.707105 TCCATAGATACATGCCACAACAG 58.293 43.478 0.00 0.00 0.00 3.16
2819 2875 4.060205 GCATTCCAGCAAGTTCAACATTT 58.940 39.130 0.00 0.00 0.00 2.32
2822 2878 6.652245 CATTCCAGCAAGTTCAACATTTTTC 58.348 36.000 0.00 0.00 0.00 2.29
2858 2926 8.697507 AAAAAGTGTTTCTCCTAATGATGAGT 57.302 30.769 0.00 0.00 0.00 3.41
2942 3010 9.793259 ATAATGAAGTCTTTTTCTCCTGTTGTA 57.207 29.630 0.00 0.00 0.00 2.41
2958 3026 7.338710 TCCTGTTGTAAAGCATAGCTCTATTT 58.661 34.615 0.00 0.00 38.25 1.40
3053 3121 7.264294 ACATGGAGAATTAGAAGGGGATATC 57.736 40.000 0.00 0.00 0.00 1.63
3054 3122 6.070538 ACATGGAGAATTAGAAGGGGATATCG 60.071 42.308 0.00 0.00 0.00 2.92
3145 3213 6.155910 TCTCTTTATGGACTGAAGCAATCTCT 59.844 38.462 0.00 0.00 0.00 3.10
3267 3335 9.787532 GTTCAGCTATTTATTTGCTCATTTACA 57.212 29.630 0.00 0.00 34.51 2.41
3302 3370 4.361451 AATTGCTTCAAAGAGTATGCCG 57.639 40.909 0.00 0.00 0.00 5.69
3320 3388 8.784043 AGTATGCCGGAGATTAATGAATTAAAC 58.216 33.333 5.05 0.00 36.02 2.01
3355 3423 8.543774 CAGTAACGAATTTGAGATGAAGGATAC 58.456 37.037 0.00 0.00 0.00 2.24
3356 3424 8.258007 AGTAACGAATTTGAGATGAAGGATACA 58.742 33.333 0.00 0.00 41.41 2.29
3360 3428 8.258007 ACGAATTTGAGATGAAGGATACAAGTA 58.742 33.333 0.00 0.00 41.41 2.24
3514 3629 8.414629 AGTCAGATGCAGATATTGAGTACATA 57.585 34.615 0.00 0.00 0.00 2.29
3516 3631 9.650539 GTCAGATGCAGATATTGAGTACATATT 57.349 33.333 0.00 0.00 0.00 1.28
3548 3663 2.254546 TTCGAGTGCAGTTGGTTCAT 57.745 45.000 8.97 0.00 0.00 2.57
3577 3692 2.762887 TGCAATGGTTTGTTCTTGTCCA 59.237 40.909 0.00 0.00 35.17 4.02
3607 3722 6.122850 TCATATGCATTGAGTGTTGTTAGC 57.877 37.500 3.54 0.00 0.00 3.09
3610 3725 2.553602 TGCATTGAGTGTTGTTAGCAGG 59.446 45.455 0.00 0.00 0.00 4.85
3671 3786 7.690256 AGTTCAGTGGATTTTTAGATACCTGT 58.310 34.615 0.00 0.00 0.00 4.00
3691 3806 5.581085 CCTGTGTGGTACTTCTAATGCTTAC 59.419 44.000 0.00 0.00 0.00 2.34
3700 3816 6.884280 ACTTCTAATGCTTACTTGCAGTTT 57.116 33.333 0.00 0.00 46.71 2.66
3715 3831 6.547510 ACTTGCAGTTTGGAAAACTAGAGATT 59.452 34.615 5.13 0.00 0.00 2.40
3716 3832 6.560253 TGCAGTTTGGAAAACTAGAGATTC 57.440 37.500 5.13 0.00 0.00 2.52
3774 3890 7.226325 GGTGATTTGGATAAGAGAAGATCACTG 59.774 40.741 11.47 0.00 40.96 3.66
3816 3932 1.378531 GTGGTTGTGCTGTGAGTTGA 58.621 50.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.109272 TCGCTAGAACAAGACTGCGG 60.109 55.000 0.00 0.00 43.00 5.69
2 3 0.985549 GTCGCTAGAACAAGACTGCG 59.014 55.000 0.00 0.00 43.95 5.18
5 6 0.596577 TGCGTCGCTAGAACAAGACT 59.403 50.000 19.50 0.00 0.00 3.24
7 8 1.992667 CAATGCGTCGCTAGAACAAGA 59.007 47.619 19.50 0.00 0.00 3.02
8 9 1.992667 TCAATGCGTCGCTAGAACAAG 59.007 47.619 19.50 0.20 0.00 3.16
9 10 1.724623 GTCAATGCGTCGCTAGAACAA 59.275 47.619 19.50 0.00 0.00 2.83
10 11 1.346365 GTCAATGCGTCGCTAGAACA 58.654 50.000 19.50 0.00 0.00 3.18
11 12 0.645868 GGTCAATGCGTCGCTAGAAC 59.354 55.000 19.50 12.07 0.00 3.01
12 13 0.245266 TGGTCAATGCGTCGCTAGAA 59.755 50.000 19.50 0.00 0.00 2.10
13 14 0.459899 ATGGTCAATGCGTCGCTAGA 59.540 50.000 19.50 10.49 0.00 2.43
14 15 1.258982 GAATGGTCAATGCGTCGCTAG 59.741 52.381 19.50 8.21 0.00 3.42
15 16 1.286501 GAATGGTCAATGCGTCGCTA 58.713 50.000 19.50 5.27 0.00 4.26
16 17 0.673333 TGAATGGTCAATGCGTCGCT 60.673 50.000 19.50 0.71 0.00 4.93
17 18 0.378257 ATGAATGGTCAATGCGTCGC 59.622 50.000 11.10 11.10 37.30 5.19
18 19 1.268184 CCATGAATGGTCAATGCGTCG 60.268 52.381 0.82 0.00 43.05 5.12
19 20 2.480224 CCATGAATGGTCAATGCGTC 57.520 50.000 0.82 0.00 43.05 5.19
29 30 9.543939 ACATCGAAATGCATGTACCATGAATGG 62.544 40.741 0.00 7.82 44.08 3.16
30 31 5.172460 TCGAAATGCATGTACCATGAATG 57.828 39.130 0.00 0.00 0.00 2.67
31 32 5.300034 ACATCGAAATGCATGTACCATGAAT 59.700 36.000 0.00 0.08 36.26 2.57
32 33 4.639755 ACATCGAAATGCATGTACCATGAA 59.360 37.500 0.00 0.00 36.26 2.57
33 34 4.035441 CACATCGAAATGCATGTACCATGA 59.965 41.667 0.00 0.00 36.26 3.07
34 35 4.035441 TCACATCGAAATGCATGTACCATG 59.965 41.667 0.00 0.19 36.26 3.66
35 36 4.198530 TCACATCGAAATGCATGTACCAT 58.801 39.130 0.00 0.00 36.26 3.55
36 37 3.604582 TCACATCGAAATGCATGTACCA 58.395 40.909 0.00 0.00 36.26 3.25
37 38 4.818534 ATCACATCGAAATGCATGTACC 57.181 40.909 0.00 0.00 36.26 3.34
38 39 6.052840 AGAATCACATCGAAATGCATGTAC 57.947 37.500 0.00 0.00 36.26 2.90
39 40 6.682423 AAGAATCACATCGAAATGCATGTA 57.318 33.333 0.00 0.00 36.26 2.29
40 41 5.571784 AAGAATCACATCGAAATGCATGT 57.428 34.783 0.00 0.00 36.26 3.21
41 42 9.836076 AATATAAGAATCACATCGAAATGCATG 57.164 29.630 0.00 0.00 36.26 4.06
49 50 9.489084 CAAGGGTTAATATAAGAATCACATCGA 57.511 33.333 0.00 0.00 0.00 3.59
50 51 9.273016 ACAAGGGTTAATATAAGAATCACATCG 57.727 33.333 0.00 0.00 0.00 3.84
66 67 9.423964 ACAAAGGACTTTAAATACAAGGGTTAA 57.576 29.630 0.00 0.00 0.00 2.01
67 68 8.999905 ACAAAGGACTTTAAATACAAGGGTTA 57.000 30.769 0.00 0.00 0.00 2.85
68 69 7.907841 ACAAAGGACTTTAAATACAAGGGTT 57.092 32.000 0.00 0.00 0.00 4.11
69 70 8.222637 AGTACAAAGGACTTTAAATACAAGGGT 58.777 33.333 0.00 0.00 0.00 4.34
70 71 8.631480 AGTACAAAGGACTTTAAATACAAGGG 57.369 34.615 0.00 0.00 0.00 3.95
73 74 8.776470 CGGAAGTACAAAGGACTTTAAATACAA 58.224 33.333 0.00 0.00 37.27 2.41
74 75 7.095102 GCGGAAGTACAAAGGACTTTAAATACA 60.095 37.037 0.00 0.00 37.27 2.29
75 76 7.118825 AGCGGAAGTACAAAGGACTTTAAATAC 59.881 37.037 0.00 2.01 37.27 1.89
76 77 7.118680 CAGCGGAAGTACAAAGGACTTTAAATA 59.881 37.037 0.00 0.00 37.27 1.40
77 78 6.002082 AGCGGAAGTACAAAGGACTTTAAAT 58.998 36.000 0.00 0.00 37.27 1.40
78 79 5.237779 CAGCGGAAGTACAAAGGACTTTAAA 59.762 40.000 0.00 0.00 37.27 1.52
79 80 4.753107 CAGCGGAAGTACAAAGGACTTTAA 59.247 41.667 0.00 0.00 37.27 1.52
80 81 4.039488 TCAGCGGAAGTACAAAGGACTTTA 59.961 41.667 0.00 0.00 37.27 1.85
81 82 3.139077 CAGCGGAAGTACAAAGGACTTT 58.861 45.455 0.00 0.00 37.27 2.66
82 83 2.367567 TCAGCGGAAGTACAAAGGACTT 59.632 45.455 0.00 0.00 39.85 3.01
83 84 1.968493 TCAGCGGAAGTACAAAGGACT 59.032 47.619 0.00 0.00 0.00 3.85
84 85 2.450609 TCAGCGGAAGTACAAAGGAC 57.549 50.000 0.00 0.00 0.00 3.85
85 86 3.596214 GATTCAGCGGAAGTACAAAGGA 58.404 45.455 5.34 0.00 36.25 3.36
86 87 2.678336 GGATTCAGCGGAAGTACAAAGG 59.322 50.000 5.34 0.00 36.25 3.11
87 88 3.372206 CAGGATTCAGCGGAAGTACAAAG 59.628 47.826 5.34 0.00 36.25 2.77
88 89 3.334691 CAGGATTCAGCGGAAGTACAAA 58.665 45.455 5.34 0.00 36.25 2.83
89 90 2.354704 CCAGGATTCAGCGGAAGTACAA 60.355 50.000 5.34 0.00 36.25 2.41
90 91 1.207089 CCAGGATTCAGCGGAAGTACA 59.793 52.381 5.34 0.00 36.25 2.90
91 92 1.480954 TCCAGGATTCAGCGGAAGTAC 59.519 52.381 5.34 0.00 36.25 2.73
92 93 1.860641 TCCAGGATTCAGCGGAAGTA 58.139 50.000 5.34 0.00 36.25 2.24
93 94 1.134280 CATCCAGGATTCAGCGGAAGT 60.134 52.381 0.00 0.00 36.25 3.01
94 95 1.134280 ACATCCAGGATTCAGCGGAAG 60.134 52.381 0.00 0.00 36.25 3.46
95 96 0.911769 ACATCCAGGATTCAGCGGAA 59.088 50.000 0.00 0.63 37.45 4.30
96 97 0.178767 CACATCCAGGATTCAGCGGA 59.821 55.000 0.00 0.00 0.00 5.54
97 98 0.816825 CCACATCCAGGATTCAGCGG 60.817 60.000 0.00 0.00 0.00 5.52
98 99 0.178767 TCCACATCCAGGATTCAGCG 59.821 55.000 0.00 0.00 0.00 5.18
99 100 2.106166 AGATCCACATCCAGGATTCAGC 59.894 50.000 0.00 0.00 45.65 4.26
100 101 4.434545 AAGATCCACATCCAGGATTCAG 57.565 45.455 0.00 0.00 45.65 3.02
101 102 4.868172 AAAGATCCACATCCAGGATTCA 57.132 40.909 0.00 0.00 45.65 2.57
102 103 5.653769 TCAAAAAGATCCACATCCAGGATTC 59.346 40.000 0.00 0.00 45.65 2.52
103 104 5.582953 TCAAAAAGATCCACATCCAGGATT 58.417 37.500 0.00 0.00 45.65 3.01
105 106 4.656100 TCAAAAAGATCCACATCCAGGA 57.344 40.909 0.00 0.00 39.97 3.86
106 107 5.726980 TTTCAAAAAGATCCACATCCAGG 57.273 39.130 0.00 0.00 0.00 4.45
107 108 9.880157 ATTATTTTCAAAAAGATCCACATCCAG 57.120 29.630 0.00 0.00 0.00 3.86
129 130 9.716507 GTTGCAGTGACGTAATAAATGAATTAT 57.283 29.630 0.00 0.00 35.69 1.28
130 131 8.722394 TGTTGCAGTGACGTAATAAATGAATTA 58.278 29.630 0.00 0.00 0.00 1.40
131 132 7.589395 TGTTGCAGTGACGTAATAAATGAATT 58.411 30.769 0.00 0.00 0.00 2.17
132 133 7.094805 ACTGTTGCAGTGACGTAATAAATGAAT 60.095 33.333 0.53 0.00 43.63 2.57
133 134 6.203915 ACTGTTGCAGTGACGTAATAAATGAA 59.796 34.615 0.53 0.00 43.63 2.57
134 135 5.699001 ACTGTTGCAGTGACGTAATAAATGA 59.301 36.000 0.53 0.00 43.63 2.57
135 136 5.927030 ACTGTTGCAGTGACGTAATAAATG 58.073 37.500 0.53 0.00 43.63 2.32
136 137 7.601130 TCTTACTGTTGCAGTGACGTAATAAAT 59.399 33.333 11.57 0.00 45.01 1.40
137 138 6.924612 TCTTACTGTTGCAGTGACGTAATAAA 59.075 34.615 11.57 0.00 45.01 1.40
138 139 6.364165 GTCTTACTGTTGCAGTGACGTAATAA 59.636 38.462 11.57 0.00 45.01 1.40
139 140 5.860182 GTCTTACTGTTGCAGTGACGTAATA 59.140 40.000 11.57 0.00 45.01 0.98
140 141 4.684703 GTCTTACTGTTGCAGTGACGTAAT 59.315 41.667 11.57 0.00 45.01 1.89
141 142 4.046462 GTCTTACTGTTGCAGTGACGTAA 58.954 43.478 11.57 0.00 45.01 3.18
142 143 3.317149 AGTCTTACTGTTGCAGTGACGTA 59.683 43.478 11.57 0.00 45.01 3.57
143 144 2.100916 AGTCTTACTGTTGCAGTGACGT 59.899 45.455 11.57 0.00 45.01 4.34
144 145 2.472861 CAGTCTTACTGTTGCAGTGACG 59.527 50.000 11.57 5.19 45.01 4.35
145 146 2.802816 CCAGTCTTACTGTTGCAGTGAC 59.197 50.000 11.57 10.71 45.01 3.67
146 147 2.434336 ACCAGTCTTACTGTTGCAGTGA 59.566 45.455 11.57 3.10 45.01 3.41
147 148 2.838736 ACCAGTCTTACTGTTGCAGTG 58.161 47.619 11.57 0.00 45.01 3.66
148 149 3.206150 CAACCAGTCTTACTGTTGCAGT 58.794 45.455 6.99 6.99 44.50 4.40
149 150 3.206150 ACAACCAGTCTTACTGTTGCAG 58.794 45.455 15.76 0.00 44.50 4.41
150 151 3.275617 ACAACCAGTCTTACTGTTGCA 57.724 42.857 15.76 0.00 44.50 4.08
151 152 5.468746 TCATTACAACCAGTCTTACTGTTGC 59.531 40.000 15.76 0.00 44.50 4.17
152 153 7.441157 TCTTCATTACAACCAGTCTTACTGTTG 59.559 37.037 14.91 14.91 44.50 3.33
153 154 7.506114 TCTTCATTACAACCAGTCTTACTGTT 58.494 34.615 6.33 0.00 44.50 3.16
154 155 7.062749 TCTTCATTACAACCAGTCTTACTGT 57.937 36.000 6.33 0.00 44.50 3.55
155 156 7.155328 ACTCTTCATTACAACCAGTCTTACTG 58.845 38.462 0.00 0.00 45.53 2.74
156 157 7.304497 ACTCTTCATTACAACCAGTCTTACT 57.696 36.000 0.00 0.00 0.00 2.24
157 158 9.303537 GATACTCTTCATTACAACCAGTCTTAC 57.696 37.037 0.00 0.00 0.00 2.34
158 159 9.031537 TGATACTCTTCATTACAACCAGTCTTA 57.968 33.333 0.00 0.00 0.00 2.10
159 160 7.907389 TGATACTCTTCATTACAACCAGTCTT 58.093 34.615 0.00 0.00 0.00 3.01
160 161 7.482169 TGATACTCTTCATTACAACCAGTCT 57.518 36.000 0.00 0.00 0.00 3.24
161 162 9.988815 ATATGATACTCTTCATTACAACCAGTC 57.011 33.333 0.00 0.00 37.51 3.51
208 209 9.479549 TCATGCATGTCCTAGAATATAGTATCA 57.520 33.333 25.43 0.00 0.00 2.15
212 213 9.486123 AGTATCATGCATGTCCTAGAATATAGT 57.514 33.333 25.43 12.37 0.00 2.12
215 216 9.259832 TGTAGTATCATGCATGTCCTAGAATAT 57.740 33.333 25.43 11.16 0.00 1.28
216 217 8.650143 TGTAGTATCATGCATGTCCTAGAATA 57.350 34.615 25.43 11.56 0.00 1.75
217 218 7.544804 TGTAGTATCATGCATGTCCTAGAAT 57.455 36.000 25.43 12.54 0.00 2.40
218 219 6.976934 TGTAGTATCATGCATGTCCTAGAA 57.023 37.500 25.43 5.50 0.00 2.10
219 220 6.239317 GGTTGTAGTATCATGCATGTCCTAGA 60.239 42.308 25.43 17.59 0.00 2.43
220 221 5.928839 GGTTGTAGTATCATGCATGTCCTAG 59.071 44.000 25.43 0.00 0.00 3.02
221 222 5.365314 TGGTTGTAGTATCATGCATGTCCTA 59.635 40.000 25.43 18.92 0.00 2.94
222 223 4.164030 TGGTTGTAGTATCATGCATGTCCT 59.836 41.667 25.43 19.82 0.00 3.85
223 224 4.450976 TGGTTGTAGTATCATGCATGTCC 58.549 43.478 25.43 14.30 0.00 4.02
224 225 5.359756 TCTGGTTGTAGTATCATGCATGTC 58.640 41.667 25.43 16.49 0.00 3.06
225 226 5.104776 ACTCTGGTTGTAGTATCATGCATGT 60.105 40.000 25.43 15.34 0.00 3.21
226 227 5.363101 ACTCTGGTTGTAGTATCATGCATG 58.637 41.667 21.07 21.07 0.00 4.06
227 228 5.620738 ACTCTGGTTGTAGTATCATGCAT 57.379 39.130 0.00 0.00 0.00 3.96
228 229 5.656859 AGTACTCTGGTTGTAGTATCATGCA 59.343 40.000 0.00 0.00 31.25 3.96
229 230 6.150396 AGTACTCTGGTTGTAGTATCATGC 57.850 41.667 0.00 0.00 31.25 4.06
230 231 9.684448 CATAAGTACTCTGGTTGTAGTATCATG 57.316 37.037 0.00 0.00 31.25 3.07
231 232 9.642343 TCATAAGTACTCTGGTTGTAGTATCAT 57.358 33.333 0.00 0.00 31.25 2.45
232 233 9.642343 ATCATAAGTACTCTGGTTGTAGTATCA 57.358 33.333 0.00 0.00 31.25 2.15
239 240 9.476928 AAGTAGTATCATAAGTACTCTGGTTGT 57.523 33.333 0.00 0.00 35.09 3.32
254 255 9.616156 CGGAGGTAGTATCATAAGTAGTATCAT 57.384 37.037 0.00 0.00 0.00 2.45
255 256 8.600668 ACGGAGGTAGTATCATAAGTAGTATCA 58.399 37.037 0.00 0.00 0.00 2.15
262 263 9.970553 TGATATTACGGAGGTAGTATCATAAGT 57.029 33.333 12.55 0.00 45.59 2.24
270 271 9.537852 ACCAAATATGATATTACGGAGGTAGTA 57.462 33.333 16.28 0.00 0.00 1.82
271 272 8.431910 ACCAAATATGATATTACGGAGGTAGT 57.568 34.615 16.28 0.00 0.00 2.73
274 275 9.042450 TGATACCAAATATGATATTACGGAGGT 57.958 33.333 16.28 12.64 0.00 3.85
300 301 9.910267 TGCATGGCAATAAATATAGTCATCTAT 57.090 29.630 0.00 0.00 36.86 1.98
301 302 9.910267 ATGCATGGCAATAAATATAGTCATCTA 57.090 29.630 0.00 0.00 43.62 1.98
302 303 8.683615 CATGCATGGCAATAAATATAGTCATCT 58.316 33.333 19.40 0.00 43.62 2.90
303 304 8.680001 TCATGCATGGCAATAAATATAGTCATC 58.320 33.333 25.97 0.00 43.62 2.92
304 305 8.464404 GTCATGCATGGCAATAAATATAGTCAT 58.536 33.333 26.04 0.00 43.62 3.06
305 306 7.447853 TGTCATGCATGGCAATAAATATAGTCA 59.552 33.333 30.82 2.65 43.62 3.41
306 307 7.819644 TGTCATGCATGGCAATAAATATAGTC 58.180 34.615 30.82 0.00 43.62 2.59
307 308 7.764141 TGTCATGCATGGCAATAAATATAGT 57.236 32.000 30.82 0.00 43.62 2.12
310 311 9.647797 CTTTATGTCATGCATGGCAATAAATAT 57.352 29.630 35.40 20.43 46.52 1.28
311 312 8.640651 ACTTTATGTCATGCATGGCAATAAATA 58.359 29.630 35.40 20.80 46.52 1.40
312 313 7.502696 ACTTTATGTCATGCATGGCAATAAAT 58.497 30.769 35.40 21.84 46.52 1.40
313 314 6.876155 ACTTTATGTCATGCATGGCAATAAA 58.124 32.000 35.40 30.47 46.52 1.40
314 315 6.468333 ACTTTATGTCATGCATGGCAATAA 57.532 33.333 35.40 27.69 46.52 1.40
315 316 6.294120 GCTACTTTATGTCATGCATGGCAATA 60.294 38.462 35.40 23.35 46.52 1.90
316 317 5.508489 GCTACTTTATGTCATGCATGGCAAT 60.508 40.000 35.40 24.63 46.52 3.56
317 318 4.202040 GCTACTTTATGTCATGCATGGCAA 60.202 41.667 35.40 21.90 46.52 4.52
319 320 3.316029 TGCTACTTTATGTCATGCATGGC 59.684 43.478 24.40 24.40 38.47 4.40
320 321 4.336153 TGTGCTACTTTATGTCATGCATGG 59.664 41.667 25.97 10.76 38.47 3.66
321 322 5.488645 TGTGCTACTTTATGTCATGCATG 57.511 39.130 21.07 21.07 38.47 4.06
322 323 5.824097 TGATGTGCTACTTTATGTCATGCAT 59.176 36.000 0.00 0.00 41.42 3.96
323 324 5.184711 TGATGTGCTACTTTATGTCATGCA 58.815 37.500 0.00 0.00 0.00 3.96
324 325 5.739752 TGATGTGCTACTTTATGTCATGC 57.260 39.130 0.00 0.00 0.00 4.06
335 336 9.371136 CCGTATCATATTAAATGATGTGCTACT 57.629 33.333 16.73 0.65 38.98 2.57
336 337 9.151471 ACCGTATCATATTAAATGATGTGCTAC 57.849 33.333 16.73 9.67 38.98 3.58
338 339 9.890629 ATACCGTATCATATTAAATGATGTGCT 57.109 29.630 16.73 5.80 38.98 4.40
363 364 7.855368 AGAGAGGCTCGAGTATCATATCATGAT 60.855 40.741 15.13 13.81 42.85 2.45
364 365 5.504853 AGAGGCTCGAGTATCATATCATGA 58.495 41.667 15.13 0.00 44.55 3.07
365 366 5.589855 AGAGAGGCTCGAGTATCATATCATG 59.410 44.000 15.13 0.00 35.36 3.07
366 367 5.754782 AGAGAGGCTCGAGTATCATATCAT 58.245 41.667 15.13 0.00 35.36 2.45
367 368 5.172687 AGAGAGGCTCGAGTATCATATCA 57.827 43.478 15.13 0.00 35.36 2.15
368 369 6.374333 AGAAAGAGAGGCTCGAGTATCATATC 59.626 42.308 15.13 2.02 35.36 1.63
369 370 6.245408 AGAAAGAGAGGCTCGAGTATCATAT 58.755 40.000 15.13 0.00 35.36 1.78
370 371 5.626142 AGAAAGAGAGGCTCGAGTATCATA 58.374 41.667 15.13 0.00 35.36 2.15
371 372 4.469657 AGAAAGAGAGGCTCGAGTATCAT 58.530 43.478 15.13 0.00 35.36 2.45
372 373 3.892284 AGAAAGAGAGGCTCGAGTATCA 58.108 45.455 15.13 0.00 35.36 2.15
373 374 4.336993 TGAAGAAAGAGAGGCTCGAGTATC 59.663 45.833 15.13 12.20 35.36 2.24
374 375 4.274147 TGAAGAAAGAGAGGCTCGAGTAT 58.726 43.478 15.13 2.38 35.36 2.12
375 376 3.687125 TGAAGAAAGAGAGGCTCGAGTA 58.313 45.455 15.13 0.00 35.36 2.59
376 377 2.520069 TGAAGAAAGAGAGGCTCGAGT 58.480 47.619 15.13 0.00 35.36 4.18
377 378 3.799281 ATGAAGAAAGAGAGGCTCGAG 57.201 47.619 8.45 8.45 35.36 4.04
378 379 4.543590 AAATGAAGAAAGAGAGGCTCGA 57.456 40.909 9.22 0.00 35.36 4.04
379 380 6.917217 ATTAAATGAAGAAAGAGAGGCTCG 57.083 37.500 9.22 0.00 35.36 5.03
380 381 8.504812 AGAATTAAATGAAGAAAGAGAGGCTC 57.495 34.615 6.34 6.34 0.00 4.70
391 392 9.653287 ACGAAGTGACATAGAATTAAATGAAGA 57.347 29.630 6.52 0.00 42.51 2.87
413 414 9.284594 GCATGCTAACTAAATAATTTTGACGAA 57.715 29.630 11.37 0.00 0.00 3.85
414 415 8.454894 TGCATGCTAACTAAATAATTTTGACGA 58.545 29.630 20.33 0.00 0.00 4.20
415 416 8.613613 TGCATGCTAACTAAATAATTTTGACG 57.386 30.769 20.33 0.00 0.00 4.35
423 424 9.219603 GGAGTATCATGCATGCTAACTAAATAA 57.780 33.333 22.25 0.00 36.25 1.40
424 425 7.824289 GGGAGTATCATGCATGCTAACTAAATA 59.176 37.037 22.25 8.87 36.25 1.40
425 426 6.656693 GGGAGTATCATGCATGCTAACTAAAT 59.343 38.462 22.25 9.87 36.25 1.40
426 427 5.997746 GGGAGTATCATGCATGCTAACTAAA 59.002 40.000 22.25 2.12 36.25 1.85
427 428 5.071653 TGGGAGTATCATGCATGCTAACTAA 59.928 40.000 22.25 2.92 36.25 2.24
428 429 4.592778 TGGGAGTATCATGCATGCTAACTA 59.407 41.667 22.25 3.72 36.25 2.24
429 430 3.392285 TGGGAGTATCATGCATGCTAACT 59.608 43.478 22.25 21.56 36.25 2.24
430 431 3.499918 GTGGGAGTATCATGCATGCTAAC 59.500 47.826 22.25 17.59 36.25 2.34
431 432 3.392285 AGTGGGAGTATCATGCATGCTAA 59.608 43.478 22.25 5.34 36.25 3.09
432 433 2.974794 AGTGGGAGTATCATGCATGCTA 59.025 45.455 22.25 14.10 36.25 3.49
433 434 1.773052 AGTGGGAGTATCATGCATGCT 59.227 47.619 22.25 15.24 36.25 3.79
434 435 2.267174 AGTGGGAGTATCATGCATGC 57.733 50.000 22.25 11.82 36.25 4.06
435 436 4.313282 CTGTAGTGGGAGTATCATGCATG 58.687 47.826 21.07 21.07 36.25 4.06
436 437 3.244353 GCTGTAGTGGGAGTATCATGCAT 60.244 47.826 0.00 0.00 36.25 3.96
437 438 2.103094 GCTGTAGTGGGAGTATCATGCA 59.897 50.000 0.00 0.00 36.25 3.96
438 439 2.548920 GGCTGTAGTGGGAGTATCATGC 60.549 54.545 0.00 0.00 36.25 4.06
439 440 2.700371 TGGCTGTAGTGGGAGTATCATG 59.300 50.000 0.00 0.00 36.25 3.07
440 441 2.968574 CTGGCTGTAGTGGGAGTATCAT 59.031 50.000 0.00 0.00 36.25 2.45
441 442 2.388735 CTGGCTGTAGTGGGAGTATCA 58.611 52.381 0.00 0.00 36.25 2.15
442 443 1.069358 GCTGGCTGTAGTGGGAGTATC 59.931 57.143 0.00 0.00 0.00 2.24
443 444 1.123928 GCTGGCTGTAGTGGGAGTAT 58.876 55.000 0.00 0.00 0.00 2.12
444 445 0.976073 GGCTGGCTGTAGTGGGAGTA 60.976 60.000 0.00 0.00 0.00 2.59
445 446 2.294078 GGCTGGCTGTAGTGGGAGT 61.294 63.158 0.00 0.00 0.00 3.85
446 447 0.687757 TAGGCTGGCTGTAGTGGGAG 60.688 60.000 14.70 0.00 0.00 4.30
447 448 0.252513 TTAGGCTGGCTGTAGTGGGA 60.253 55.000 14.70 0.00 0.00 4.37
448 449 0.618458 TTTAGGCTGGCTGTAGTGGG 59.382 55.000 14.70 0.00 0.00 4.61
449 450 2.290323 ACTTTTAGGCTGGCTGTAGTGG 60.290 50.000 14.70 2.12 0.00 4.00
450 451 3.059352 ACTTTTAGGCTGGCTGTAGTG 57.941 47.619 14.70 3.12 0.00 2.74
451 452 3.181443 ACAACTTTTAGGCTGGCTGTAGT 60.181 43.478 14.70 10.83 0.00 2.73
452 453 3.412386 ACAACTTTTAGGCTGGCTGTAG 58.588 45.455 14.70 10.22 0.00 2.74
453 454 3.502123 ACAACTTTTAGGCTGGCTGTA 57.498 42.857 14.70 0.00 0.00 2.74
454 455 2.364972 ACAACTTTTAGGCTGGCTGT 57.635 45.000 14.70 0.00 0.00 4.40
455 456 3.412386 ACTACAACTTTTAGGCTGGCTG 58.588 45.455 14.70 0.00 0.00 4.85
456 457 3.676093 GACTACAACTTTTAGGCTGGCT 58.324 45.455 9.28 9.28 0.00 4.75
457 458 2.415512 CGACTACAACTTTTAGGCTGGC 59.584 50.000 0.00 0.00 0.00 4.85
458 459 2.415512 GCGACTACAACTTTTAGGCTGG 59.584 50.000 0.00 0.00 0.00 4.85
459 460 3.064207 TGCGACTACAACTTTTAGGCTG 58.936 45.455 0.00 0.00 0.00 4.85
460 461 3.326747 CTGCGACTACAACTTTTAGGCT 58.673 45.455 0.00 0.00 0.00 4.58
461 462 2.415512 CCTGCGACTACAACTTTTAGGC 59.584 50.000 0.00 0.00 0.00 3.93
462 463 3.921677 TCCTGCGACTACAACTTTTAGG 58.078 45.455 0.00 0.00 0.00 2.69
463 464 4.557205 ACTCCTGCGACTACAACTTTTAG 58.443 43.478 0.00 0.00 0.00 1.85
464 465 4.595762 ACTCCTGCGACTACAACTTTTA 57.404 40.909 0.00 0.00 0.00 1.52
465 466 3.470645 ACTCCTGCGACTACAACTTTT 57.529 42.857 0.00 0.00 0.00 2.27
466 467 3.573110 AGTACTCCTGCGACTACAACTTT 59.427 43.478 0.00 0.00 0.00 2.66
467 468 3.155501 AGTACTCCTGCGACTACAACTT 58.844 45.455 0.00 0.00 0.00 2.66
468 469 2.792878 AGTACTCCTGCGACTACAACT 58.207 47.619 0.00 0.00 0.00 3.16
469 470 4.096081 ACATAGTACTCCTGCGACTACAAC 59.904 45.833 0.00 0.00 0.00 3.32
470 471 4.267536 ACATAGTACTCCTGCGACTACAA 58.732 43.478 0.00 0.00 0.00 2.41
471 472 3.882444 ACATAGTACTCCTGCGACTACA 58.118 45.455 0.00 0.00 0.00 2.74
472 473 5.699915 TGATACATAGTACTCCTGCGACTAC 59.300 44.000 0.00 0.00 0.00 2.73
473 474 5.861727 TGATACATAGTACTCCTGCGACTA 58.138 41.667 0.00 0.00 0.00 2.59
474 475 4.715713 TGATACATAGTACTCCTGCGACT 58.284 43.478 0.00 0.00 0.00 4.18
475 476 5.434352 TTGATACATAGTACTCCTGCGAC 57.566 43.478 0.00 0.00 0.00 5.19
476 477 7.754851 TTATTGATACATAGTACTCCTGCGA 57.245 36.000 0.00 0.00 0.00 5.10
477 478 7.489435 CCATTATTGATACATAGTACTCCTGCG 59.511 40.741 0.00 0.00 0.00 5.18
478 479 7.278868 GCCATTATTGATACATAGTACTCCTGC 59.721 40.741 0.00 0.00 0.00 4.85
479 480 8.314021 TGCCATTATTGATACATAGTACTCCTG 58.686 37.037 0.00 0.75 0.00 3.86
480 481 8.435931 TGCCATTATTGATACATAGTACTCCT 57.564 34.615 0.00 0.00 0.00 3.69
481 482 8.314751 ACTGCCATTATTGATACATAGTACTCC 58.685 37.037 0.00 0.00 0.00 3.85
482 483 9.360093 GACTGCCATTATTGATACATAGTACTC 57.640 37.037 0.00 0.00 0.00 2.59
483 484 8.029522 CGACTGCCATTATTGATACATAGTACT 58.970 37.037 0.00 0.00 0.00 2.73
484 485 8.027189 TCGACTGCCATTATTGATACATAGTAC 58.973 37.037 0.00 0.00 0.00 2.73
485 486 8.117813 TCGACTGCCATTATTGATACATAGTA 57.882 34.615 0.00 0.00 0.00 1.82
486 487 6.993079 TCGACTGCCATTATTGATACATAGT 58.007 36.000 0.00 0.00 0.00 2.12
487 488 7.010830 CCATCGACTGCCATTATTGATACATAG 59.989 40.741 0.00 0.00 0.00 2.23
488 489 6.818142 CCATCGACTGCCATTATTGATACATA 59.182 38.462 0.00 0.00 0.00 2.29
489 490 5.645067 CCATCGACTGCCATTATTGATACAT 59.355 40.000 0.00 0.00 0.00 2.29
490 491 4.996758 CCATCGACTGCCATTATTGATACA 59.003 41.667 0.00 0.00 0.00 2.29
524 525 6.929049 CACAAGTTACATTTCTCCTACTCACA 59.071 38.462 0.00 0.00 0.00 3.58
543 545 2.031163 GAGCCCACGAGCACAAGT 59.969 61.111 0.00 0.00 34.23 3.16
544 546 3.114616 CGAGCCCACGAGCACAAG 61.115 66.667 0.00 0.00 35.09 3.16
557 559 1.300971 TTCAGAGCATTGCCACGAGC 61.301 55.000 4.70 0.00 44.14 5.03
558 560 0.725686 CTTCAGAGCATTGCCACGAG 59.274 55.000 4.70 0.00 0.00 4.18
559 561 0.321346 TCTTCAGAGCATTGCCACGA 59.679 50.000 4.70 0.00 0.00 4.35
560 562 0.725686 CTCTTCAGAGCATTGCCACG 59.274 55.000 4.70 0.00 35.13 4.94
618 621 1.139654 TCATCCCAATCTGCTCTTCGG 59.860 52.381 0.00 0.00 0.00 4.30
631 634 1.079405 GCGAGTTTCCGTCATCCCA 60.079 57.895 0.00 0.00 0.00 4.37
634 637 2.165301 CCCGCGAGTTTCCGTCATC 61.165 63.158 8.23 0.00 0.00 2.92
638 641 2.048503 CTTCCCGCGAGTTTCCGT 60.049 61.111 8.23 0.00 0.00 4.69
655 658 0.456628 GTACTCTCCGTGGAGCCTTC 59.543 60.000 11.17 0.00 41.71 3.46
691 694 4.660938 GGCGCCTTTGGGAGTGGT 62.661 66.667 22.15 0.00 34.78 4.16
729 732 0.320374 CGTAAAGGGACAGCTCCACA 59.680 55.000 0.00 0.00 38.52 4.17
770 774 5.644977 TCTCGACAGAATTTAAGCTCTGA 57.355 39.130 18.00 1.27 41.38 3.27
805 809 1.154131 CGTGAGACCGTGAGCTGAG 60.154 63.158 0.00 0.00 0.00 3.35
823 827 0.305922 GTAGAGCAATGCATGGCGAC 59.694 55.000 20.31 17.41 34.54 5.19
824 828 0.815213 GGTAGAGCAATGCATGGCGA 60.815 55.000 20.31 7.31 34.54 5.54
825 829 1.096967 TGGTAGAGCAATGCATGGCG 61.097 55.000 20.31 3.55 34.54 5.69
852 856 3.843422 TCCAGTCAAATTTGGACATGGT 58.157 40.909 17.90 0.00 38.53 3.55
881 885 2.838202 CGGGGATAATATAGTGTGGCCT 59.162 50.000 3.32 0.00 0.00 5.19
949 954 4.265893 GAAATGGTTTTGGGTTGGTTTGT 58.734 39.130 0.00 0.00 0.00 2.83
972 978 7.618502 TTCACTTCACTCTTCTAGCTAGTAG 57.381 40.000 20.10 19.31 0.00 2.57
1072 1078 1.896660 GGCCGTGCTTGAGGAACAA 60.897 57.895 0.00 0.00 36.97 2.83
1431 1461 1.004560 CTTGCTCGGCAGGTTGAGA 60.005 57.895 0.00 0.00 40.61 3.27
1497 1527 0.906282 GAGGAACACCCGGGAAGGTA 60.906 60.000 32.02 0.00 38.39 3.08
1566 1596 0.453282 TGCGTAAGACGTACACGAGC 60.453 55.000 17.20 7.21 44.73 5.03
1635 1665 2.358247 GCGGGCTCTTCCAACGAA 60.358 61.111 0.00 0.00 36.21 3.85
1639 1669 2.032528 CAGTGCGGGCTCTTCCAA 59.967 61.111 0.00 0.00 36.21 3.53
1707 1737 1.004277 ACCAACGGTCCAATGCAGTAT 59.996 47.619 0.00 0.00 0.00 2.12
2210 2252 1.822506 GGCCTTAACCACCTCTTCAC 58.177 55.000 0.00 0.00 0.00 3.18
2398 2443 1.132834 GCATCAATCGTGCATGGTTGA 59.867 47.619 31.26 31.26 42.08 3.18
2418 2463 8.240883 ACATTAAGTAGAGTTTACAAGCTTCG 57.759 34.615 0.00 0.00 0.00 3.79
2470 2515 1.421410 GCCTGAGTAATGTGCGTCCG 61.421 60.000 0.00 0.00 0.00 4.79
2471 2516 0.391130 TGCCTGAGTAATGTGCGTCC 60.391 55.000 0.00 0.00 0.00 4.79
2474 2519 1.806542 AGTTTGCCTGAGTAATGTGCG 59.193 47.619 0.00 0.00 0.00 5.34
2475 2520 3.923017 AAGTTTGCCTGAGTAATGTGC 57.077 42.857 0.00 0.00 0.00 4.57
2476 2521 6.375455 AGGAATAAGTTTGCCTGAGTAATGTG 59.625 38.462 0.00 0.00 0.00 3.21
2477 2522 6.485171 AGGAATAAGTTTGCCTGAGTAATGT 58.515 36.000 0.00 0.00 0.00 2.71
2478 2523 8.682936 ATAGGAATAAGTTTGCCTGAGTAATG 57.317 34.615 0.00 0.00 32.04 1.90
2480 2525 9.778741 CATATAGGAATAAGTTTGCCTGAGTAA 57.221 33.333 0.00 0.00 32.04 2.24
2481 2526 9.154632 TCATATAGGAATAAGTTTGCCTGAGTA 57.845 33.333 0.00 0.00 32.04 2.59
2487 2532 6.017440 TGCGTTCATATAGGAATAAGTTTGCC 60.017 38.462 2.74 0.00 0.00 4.52
2525 2570 7.542130 CAGTTTTCCAAAAGTGTTCATATAGGC 59.458 37.037 10.34 0.00 41.91 3.93
2541 2588 1.142060 TCTTCCGGCTCAGTTTTCCAA 59.858 47.619 0.00 0.00 0.00 3.53
2542 2589 0.762418 TCTTCCGGCTCAGTTTTCCA 59.238 50.000 0.00 0.00 0.00 3.53
2548 2595 0.965866 TCACGATCTTCCGGCTCAGT 60.966 55.000 0.00 0.00 0.00 3.41
2582 2629 6.614160 TCGTTAGACTACGAAATGATTGTGA 58.386 36.000 0.00 0.00 46.50 3.58
2583 2630 6.864560 TCGTTAGACTACGAAATGATTGTG 57.135 37.500 0.00 0.00 46.50 3.33
2594 2641 6.304356 TGGTGGTATATTCGTTAGACTACG 57.696 41.667 0.00 0.00 42.68 3.51
2606 2653 8.567948 CGATGCTATTCTTTTTGGTGGTATATT 58.432 33.333 0.00 0.00 0.00 1.28
2612 2668 4.963276 TCGATGCTATTCTTTTTGGTGG 57.037 40.909 0.00 0.00 0.00 4.61
2661 2717 1.473258 TTTGGCATATGGGTGCTCAC 58.527 50.000 4.56 0.00 44.45 3.51
2662 2718 2.091720 AGATTTGGCATATGGGTGCTCA 60.092 45.455 4.56 0.00 44.45 4.26
2689 2745 5.721960 AGAAATAACTAAGCTCCCAGACTCA 59.278 40.000 0.00 0.00 0.00 3.41
2715 2771 7.497579 TGCTGAAGAGTAATGTTCTTGTTGTTA 59.502 33.333 1.63 0.00 35.14 2.41
2749 2805 2.879026 GTTCTCCAAGGTCTTGTGTTCC 59.121 50.000 9.51 0.00 38.85 3.62
2765 2821 5.698545 GGCATGTATCTATGGAAGTGTTCTC 59.301 44.000 0.00 0.00 0.00 2.87
2770 2826 4.707105 TGTGGCATGTATCTATGGAAGTG 58.293 43.478 0.00 0.00 0.00 3.16
2788 2844 1.180456 TGCTGGAATGCCTGTTGTGG 61.180 55.000 0.00 0.00 35.68 4.17
2796 2852 1.340889 TGTTGAACTTGCTGGAATGCC 59.659 47.619 0.00 0.00 0.00 4.40
2805 2861 4.109050 TGTCCGAAAAATGTTGAACTTGC 58.891 39.130 0.00 0.00 0.00 4.01
2834 2902 7.939039 TGACTCATCATTAGGAGAAACACTTTT 59.061 33.333 0.00 0.00 36.99 2.27
2837 2905 6.611613 TGACTCATCATTAGGAGAAACACT 57.388 37.500 0.00 0.00 36.99 3.55
2858 2926 7.903145 TCAACTAACCTTGCTTAGTATCTTGA 58.097 34.615 0.00 0.00 36.17 3.02
2942 3010 6.521151 AAAGTGCAAATAGAGCTATGCTTT 57.479 33.333 0.00 0.00 39.88 3.51
2958 3026 4.215399 GGCAACAATACTGAGTAAAGTGCA 59.785 41.667 17.02 0.00 0.00 4.57
3053 3121 5.376854 AATCTTCAGGTTGTTCCATTTCG 57.623 39.130 0.00 0.00 39.02 3.46
3054 3122 6.986231 ACAAAATCTTCAGGTTGTTCCATTTC 59.014 34.615 0.00 0.00 39.02 2.17
3073 3141 9.056005 GCTTTTCTTTTCCAGGAATAACAAAAT 57.944 29.630 1.58 0.00 0.00 1.82
3115 3183 8.862325 TTGCTTCAGTCCATAAAGAGATTTTA 57.138 30.769 0.00 0.00 0.00 1.52
3116 3184 7.765695 TTGCTTCAGTCCATAAAGAGATTTT 57.234 32.000 0.00 0.00 0.00 1.82
3168 3236 3.441572 CCTTGGGAGAGCATAAAAGTGTG 59.558 47.826 0.00 0.00 0.00 3.82
3221 3289 7.599998 GCTGAACCATTGACAGTTTTCAAATAT 59.400 33.333 0.00 0.00 38.95 1.28
3320 3388 7.077605 TCTCAAATTCGTTACTGAATTGCTTG 58.922 34.615 12.89 9.45 45.36 4.01
3335 3403 7.545362 ACTTGTATCCTTCATCTCAAATTCG 57.455 36.000 0.00 0.00 0.00 3.34
3355 3423 7.704472 TGCCAAGTATTTTCTTTGTTGTACTTG 59.296 33.333 13.35 13.35 44.04 3.16
3356 3424 7.777095 TGCCAAGTATTTTCTTTGTTGTACTT 58.223 30.769 0.00 0.00 33.90 2.24
3360 3428 5.990996 CCATGCCAAGTATTTTCTTTGTTGT 59.009 36.000 0.00 0.00 0.00 3.32
3408 3476 7.455008 TCCCTTCTGACTTAGATACACTTTTCT 59.545 37.037 0.00 0.00 34.80 2.52
3514 3629 7.819900 ACTGCACTCGAATAGAAAACTCTAAAT 59.180 33.333 0.00 0.00 0.00 1.40
3516 3631 6.688578 ACTGCACTCGAATAGAAAACTCTAA 58.311 36.000 0.00 0.00 0.00 2.10
3525 3640 3.006430 TGAACCAACTGCACTCGAATAGA 59.994 43.478 0.00 0.00 0.00 1.98
3548 3663 8.147058 ACAAGAACAAACCATTGCATACATAAA 58.853 29.630 0.00 0.00 40.34 1.40
3577 3692 8.308931 ACAACACTCAATGCATATGAAAAATCT 58.691 29.630 6.97 0.00 0.00 2.40
3607 3722 2.705658 TCCAGGATTAGCCATGTACCTG 59.294 50.000 0.00 0.00 42.82 4.00
3610 3725 5.437060 TCTTTTCCAGGATTAGCCATGTAC 58.563 41.667 0.00 0.00 40.02 2.90
3671 3786 5.642063 GCAAGTAAGCATTAGAAGTACCACA 59.358 40.000 0.00 0.00 0.00 4.17
3691 3806 6.566197 ATCTCTAGTTTTCCAAACTGCAAG 57.434 37.500 11.38 6.63 42.29 4.01
3700 3816 8.383175 ACCAATAAGTGAATCTCTAGTTTTCCA 58.617 33.333 0.00 0.00 0.00 3.53
3715 3831 8.231692 TCAGAATCAACAAAACCAATAAGTGA 57.768 30.769 0.00 0.00 0.00 3.41
3716 3832 9.480053 AATCAGAATCAACAAAACCAATAAGTG 57.520 29.630 0.00 0.00 0.00 3.16
3774 3890 5.010617 ACCAATGGTGAAAACATAACCTGTC 59.989 40.000 3.09 0.00 33.10 3.51
3816 3932 6.428159 CCACAATAGACTACAAAGTTGCTCTT 59.572 38.462 0.00 0.00 35.56 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.