Multiple sequence alignment - TraesCS3A01G278500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G278500 chr3A 100.000 6894 0 0 1 6894 508161111 508168004 0.000000e+00 12731.0
1 TraesCS3A01G278500 chr3A 89.796 98 7 3 6793 6889 476238420 476238515 9.390000e-24 122.0
2 TraesCS3A01G278500 chr3A 82.222 90 10 5 6805 6889 690683765 690683677 9.590000e-09 73.1
3 TraesCS3A01G278500 chr3D 96.264 4711 118 22 1480 6170 386434133 386438805 0.000000e+00 7672.0
4 TraesCS3A01G278500 chr3D 92.515 1483 59 16 3 1468 386432359 386433806 0.000000e+00 2076.0
5 TraesCS3A01G278500 chr3D 92.096 291 4 6 6270 6543 386438803 386439091 6.480000e-105 392.0
6 TraesCS3A01G278500 chr3B 96.493 3536 77 16 2676 6170 502640508 502644037 0.000000e+00 5799.0
7 TraesCS3A01G278500 chr3B 93.511 2697 135 18 3 2682 502637718 502640391 0.000000e+00 3975.0
8 TraesCS3A01G278500 chr3B 89.773 440 44 1 1628 2066 793293930 793294369 4.670000e-156 562.0
9 TraesCS3A01G278500 chr3B 88.989 445 42 4 1628 2066 793334364 793334807 1.690000e-150 544.0
10 TraesCS3A01G278500 chr3B 86.653 472 32 7 2246 2693 793334989 793335453 1.730000e-135 494.0
11 TraesCS3A01G278500 chr3B 86.345 476 30 16 2246 2693 793294551 793295019 2.890000e-133 486.0
12 TraesCS3A01G278500 chr3B 94.142 239 8 4 6263 6497 502644027 502644263 6.570000e-95 359.0
13 TraesCS3A01G278500 chr3B 89.610 231 15 8 6565 6792 502645241 502645465 1.130000e-72 285.0
14 TraesCS3A01G278500 chr2D 90.062 644 30 13 2247 2866 582153479 582152846 0.000000e+00 804.0
15 TraesCS3A01G278500 chr4A 87.291 598 45 5 2284 2860 359953847 359954434 0.000000e+00 654.0
16 TraesCS3A01G278500 chr4A 96.154 78 3 0 6196 6273 227083746 227083823 2.020000e-25 128.0
17 TraesCS3A01G278500 chr5D 87.782 532 35 13 1720 2243 371030774 371030265 4.600000e-166 595.0
18 TraesCS3A01G278500 chr5D 87.782 532 35 13 1720 2243 479386103 479386612 4.600000e-166 595.0
19 TraesCS3A01G278500 chr5D 83.808 562 53 17 1166 1692 371031330 371030772 3.710000e-137 499.0
20 TraesCS3A01G278500 chr5D 83.562 511 47 12 1217 1692 479385597 479386105 1.760000e-120 444.0
21 TraesCS3A01G278500 chr5D 96.203 79 2 1 6196 6274 396236441 396236518 2.020000e-25 128.0
22 TraesCS3A01G278500 chr5D 87.755 98 12 0 6792 6889 549769867 549769770 1.570000e-21 115.0
23 TraesCS3A01G278500 chr1D 87.759 531 35 14 1720 2242 469879233 469878725 1.660000e-165 593.0
24 TraesCS3A01G278500 chr1D 83.808 562 53 17 1166 1692 469879789 469879231 3.710000e-137 499.0
25 TraesCS3A01G278500 chr6A 86.842 532 38 12 1720 2243 598147479 598146972 3.610000e-157 566.0
26 TraesCS3A01G278500 chr6A 81.446 415 39 13 1314 1692 598147889 598147477 8.690000e-79 305.0
27 TraesCS3A01G278500 chr4B 86.629 531 43 9 1720 2243 62873336 62872827 4.670000e-156 562.0
28 TraesCS3A01G278500 chr4B 82.290 559 60 15 1166 1692 62873885 62873334 1.360000e-121 448.0
29 TraesCS3A01G278500 chr6D 90.932 397 18 8 1851 2243 418222004 418221622 1.020000e-142 518.0
30 TraesCS3A01G278500 chr6D 82.918 562 58 13 1166 1692 418222672 418222114 8.090000e-129 472.0
31 TraesCS3A01G278500 chr5B 89.356 404 31 2 2463 2866 81271192 81270801 1.340000e-136 497.0
32 TraesCS3A01G278500 chr5B 86.653 472 33 7 2246 2693 387887506 387887041 4.800000e-136 496.0
33 TraesCS3A01G278500 chr5B 89.881 168 15 1 2528 2693 330634530 330634363 1.510000e-51 215.0
34 TraesCS3A01G278500 chr7B 91.089 101 8 1 6793 6892 709448405 709448305 1.210000e-27 135.0
35 TraesCS3A01G278500 chr1A 91.837 98 7 1 6793 6889 47827259 47827162 1.210000e-27 135.0
36 TraesCS3A01G278500 chr7D 97.333 75 2 0 6196 6270 564074914 564074840 2.020000e-25 128.0
37 TraesCS3A01G278500 chr7D 88.000 100 10 2 6792 6889 34495258 34495357 4.370000e-22 117.0
38 TraesCS3A01G278500 chr5A 97.333 75 2 0 6196 6270 546507706 546507632 2.020000e-25 128.0
39 TraesCS3A01G278500 chr5A 94.937 79 3 1 6196 6274 6488330 6488253 9.390000e-24 122.0
40 TraesCS3A01G278500 chr5A 93.902 82 4 1 6196 6277 32937997 32938077 9.390000e-24 122.0
41 TraesCS3A01G278500 chr5A 86.735 98 12 1 6793 6889 549901009 549901106 2.630000e-19 108.0
42 TraesCS3A01G278500 chr1B 97.333 75 2 0 6196 6270 345308023 345308097 2.020000e-25 128.0
43 TraesCS3A01G278500 chr6B 96.104 77 3 0 6196 6272 534185712 534185788 7.260000e-25 126.0
44 TraesCS3A01G278500 chr2B 93.976 83 3 2 6196 6278 50222683 50222603 2.610000e-24 124.0
45 TraesCS3A01G278500 chr2B 100.000 30 0 0 6452 6481 8936859 8936888 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G278500 chr3A 508161111 508168004 6893 False 12731.0 12731 100.0000 1 6894 1 chr3A.!!$F2 6893
1 TraesCS3A01G278500 chr3D 386432359 386439091 6732 False 3380.0 7672 93.6250 3 6543 3 chr3D.!!$F1 6540
2 TraesCS3A01G278500 chr3B 502637718 502645465 7747 False 2604.5 5799 93.4390 3 6792 4 chr3B.!!$F1 6789
3 TraesCS3A01G278500 chr3B 793293930 793295019 1089 False 524.0 562 88.0590 1628 2693 2 chr3B.!!$F2 1065
4 TraesCS3A01G278500 chr3B 793334364 793335453 1089 False 519.0 544 87.8210 1628 2693 2 chr3B.!!$F3 1065
5 TraesCS3A01G278500 chr2D 582152846 582153479 633 True 804.0 804 90.0620 2247 2866 1 chr2D.!!$R1 619
6 TraesCS3A01G278500 chr4A 359953847 359954434 587 False 654.0 654 87.2910 2284 2860 1 chr4A.!!$F2 576
7 TraesCS3A01G278500 chr5D 371030265 371031330 1065 True 547.0 595 85.7950 1166 2243 2 chr5D.!!$R2 1077
8 TraesCS3A01G278500 chr5D 479385597 479386612 1015 False 519.5 595 85.6720 1217 2243 2 chr5D.!!$F2 1026
9 TraesCS3A01G278500 chr1D 469878725 469879789 1064 True 546.0 593 85.7835 1166 2242 2 chr1D.!!$R1 1076
10 TraesCS3A01G278500 chr6A 598146972 598147889 917 True 435.5 566 84.1440 1314 2243 2 chr6A.!!$R1 929
11 TraesCS3A01G278500 chr4B 62872827 62873885 1058 True 505.0 562 84.4595 1166 2243 2 chr4B.!!$R1 1077
12 TraesCS3A01G278500 chr6D 418221622 418222672 1050 True 495.0 518 86.9250 1166 2243 2 chr6D.!!$R1 1077

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 959 0.253044 CCTTCCTCCCTTTGCATCGA 59.747 55.000 0.00 0.0 0.00 3.59 F
1701 2077 0.254178 TGAAAGGGCTGAGGCATCTC 59.746 55.000 8.68 0.0 40.87 2.75 F
1873 2252 1.825090 TGCTGGATGAAACGCTTGAT 58.175 45.000 0.00 0.0 0.00 2.57 F
2625 3167 0.469917 TCCTAGGCTACTTGGCATGC 59.530 55.000 9.90 9.9 44.55 4.06 F
3601 4285 1.570857 ATGAAGGTGGGATTGCGGGA 61.571 55.000 0.00 0.0 0.00 5.14 F
4953 5656 2.020720 TGTGGTACCAGTGTGCTTTTG 58.979 47.619 16.93 0.0 0.00 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1806 2182 0.323629 TAACCAAGGCCGACTGGAAG 59.676 55.000 23.59 3.00 42.29 3.46 R
2607 3149 0.471617 AGCATGCCAAGTAGCCTAGG 59.528 55.000 15.66 3.67 0.00 3.02 R
2752 3418 3.604582 ACAGCAGGCTTCTTGAGTTATC 58.395 45.455 0.00 0.00 0.00 1.75 R
4014 4706 1.197721 CAGGTTGCAACTCGGACAATC 59.802 52.381 27.64 8.87 0.00 2.67 R
5102 5805 3.577848 CCCCAACTCATCACAATTCCAAA 59.422 43.478 0.00 0.00 0.00 3.28 R
6326 7042 0.032403 TGCATTGCCACTTTGTGAGC 59.968 50.000 6.12 2.39 35.23 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 4.827087 ACTGCCAGCGCCTCGATG 62.827 66.667 2.29 0.00 43.13 3.84
108 109 1.582610 GCCTCGATGCGGAACCAAAA 61.583 55.000 0.00 0.00 0.00 2.44
156 157 6.716628 TGGAAGACTGAAACAGAATAGCAAAT 59.283 34.615 5.76 0.00 35.18 2.32
170 171 9.935682 CAGAATAGCAAATATGTCACGTTAATT 57.064 29.630 0.00 0.00 0.00 1.40
184 185 5.242838 TCACGTTAATTTCCAGGCAAGAAAT 59.757 36.000 8.45 8.45 43.95 2.17
202 203 6.037423 AGAAATATGCGTCGAAGAAATCAC 57.963 37.500 1.37 0.00 39.69 3.06
211 212 2.086869 CGAAGAAATCACAGTGGCCAT 58.913 47.619 9.72 0.00 0.00 4.40
216 217 1.269012 AATCACAGTGGCCATTTGGG 58.731 50.000 9.72 12.80 40.85 4.12
218 219 1.228831 CACAGTGGCCATTTGGGGA 60.229 57.895 9.72 0.00 37.04 4.81
234 235 1.523758 GGGACGTCAAAGCAATCTGT 58.476 50.000 18.91 0.00 0.00 3.41
240 241 2.287788 CGTCAAAGCAATCTGTTTGGCT 60.288 45.455 1.08 0.00 36.35 4.75
261 262 8.437360 TGGCTATGTGAACACTGAAATTATAG 57.563 34.615 6.51 4.73 0.00 1.31
276 277 1.742308 TATAGGGGATTGAGGTGGCC 58.258 55.000 0.00 0.00 0.00 5.36
310 311 5.567138 GCACACTGAAATTATAAGGTGCT 57.433 39.130 13.83 0.00 44.97 4.40
336 337 4.690122 AGTGGGCGTATGTGTTTAGTATC 58.310 43.478 0.00 0.00 0.00 2.24
372 373 3.202906 CTCCGGCCGAAATTGATTTCTA 58.797 45.455 30.73 0.00 42.96 2.10
422 426 6.595716 ACTTCTATGTTTAACTCATGTGGCTC 59.404 38.462 0.00 0.00 0.00 4.70
771 776 4.715130 AGGCTGCCCTACGGTGGA 62.715 66.667 16.57 0.00 40.58 4.02
853 858 4.791069 AGCCGGACGGGTGGGTAT 62.791 66.667 15.27 0.00 45.23 2.73
854 859 2.839162 GCCGGACGGGTGGGTATA 60.839 66.667 5.05 0.00 38.44 1.47
855 860 2.864471 GCCGGACGGGTGGGTATAG 61.864 68.421 5.05 0.00 38.44 1.31
856 861 2.732658 CGGACGGGTGGGTATAGC 59.267 66.667 0.00 0.00 0.00 2.97
905 910 1.612442 GGTCCACTGGGCCTCACTA 60.612 63.158 11.92 0.00 0.00 2.74
942 947 2.568623 TTCACTTTCAGGCCTTCCTC 57.431 50.000 0.00 0.00 41.93 3.71
948 953 0.405585 TTCAGGCCTTCCTCCCTTTG 59.594 55.000 0.00 0.00 41.93 2.77
949 954 1.680314 CAGGCCTTCCTCCCTTTGC 60.680 63.158 0.00 0.00 41.93 3.68
950 955 2.162906 AGGCCTTCCTCCCTTTGCA 61.163 57.895 0.00 0.00 38.72 4.08
951 956 1.000866 GGCCTTCCTCCCTTTGCAT 59.999 57.895 0.00 0.00 0.00 3.96
953 958 1.379642 GCCTTCCTCCCTTTGCATCG 61.380 60.000 0.00 0.00 0.00 3.84
954 959 0.253044 CCTTCCTCCCTTTGCATCGA 59.747 55.000 0.00 0.00 0.00 3.59
955 960 1.340017 CCTTCCTCCCTTTGCATCGAA 60.340 52.381 0.00 0.00 0.00 3.71
956 961 2.648059 CTTCCTCCCTTTGCATCGAAT 58.352 47.619 0.00 0.00 0.00 3.34
958 963 3.085952 TCCTCCCTTTGCATCGAATTT 57.914 42.857 0.00 0.00 0.00 1.82
959 964 3.016736 TCCTCCCTTTGCATCGAATTTC 58.983 45.455 0.00 0.00 0.00 2.17
960 965 3.019564 CCTCCCTTTGCATCGAATTTCT 58.980 45.455 0.00 0.00 0.00 2.52
961 966 4.080582 TCCTCCCTTTGCATCGAATTTCTA 60.081 41.667 0.00 0.00 0.00 2.10
962 967 4.274459 CCTCCCTTTGCATCGAATTTCTAG 59.726 45.833 0.00 0.00 0.00 2.43
984 993 4.661709 AGTTTTCTACTACCCCAGTCCAAA 59.338 41.667 0.00 0.00 38.80 3.28
1107 1116 3.414700 GCCGCGCCTATGGATTCG 61.415 66.667 0.00 0.00 0.00 3.34
1117 1138 0.594028 TATGGATTCGTCGTCGCAGC 60.594 55.000 0.00 0.00 36.96 5.25
1118 1139 3.255379 GGATTCGTCGTCGCAGCC 61.255 66.667 0.00 0.00 36.96 4.85
1119 1140 3.607987 GATTCGTCGTCGCAGCCG 61.608 66.667 0.00 0.00 36.96 5.52
1137 1158 4.694233 CAGCCACAGTCGCCTGCT 62.694 66.667 0.00 0.00 42.81 4.24
1385 1406 1.488705 TTTGGGTGCGAGAGATGGGT 61.489 55.000 0.00 0.00 0.00 4.51
1450 1483 4.328440 CGAAGTTGGAAGCTCACTGATAAG 59.672 45.833 0.00 0.00 0.00 1.73
1462 1495 5.521735 GCTCACTGATAAGTTCACCTATGTG 59.478 44.000 0.00 0.00 44.18 3.21
1565 1913 8.832521 TCGTATATAAGTGTGCCCTTTAATTTG 58.167 33.333 0.00 0.00 0.00 2.32
1566 1914 8.073768 CGTATATAAGTGTGCCCTTTAATTTGG 58.926 37.037 0.00 0.00 0.00 3.28
1569 1917 4.600692 AGTGTGCCCTTTAATTTGGAAC 57.399 40.909 0.00 0.00 0.00 3.62
1570 1918 3.964031 AGTGTGCCCTTTAATTTGGAACA 59.036 39.130 0.00 0.00 0.00 3.18
1614 1986 4.020928 TGTTCTCCACTTGCTTATACCGAA 60.021 41.667 0.00 0.00 0.00 4.30
1626 1998 6.331845 TGCTTATACCGAACTTTGATCGTTA 58.668 36.000 0.00 0.00 38.60 3.18
1659 2031 2.681778 AGGCTAGAGCTGTGGCGT 60.682 61.111 13.10 10.89 44.37 5.68
1665 2037 0.894835 TAGAGCTGTGGCGTGATCAA 59.105 50.000 0.00 0.00 44.37 2.57
1682 2058 6.019559 CGTGATCAACATGTCGAGTATTTGAT 60.020 38.462 0.00 1.56 36.60 2.57
1701 2077 0.254178 TGAAAGGGCTGAGGCATCTC 59.746 55.000 8.68 0.00 40.87 2.75
1806 2182 7.706607 ACTTTGCTTACAATTTTCTTCTGGTTC 59.293 33.333 0.00 0.00 35.21 3.62
1873 2252 1.825090 TGCTGGATGAAACGCTTGAT 58.175 45.000 0.00 0.00 0.00 2.57
2290 2783 9.494271 AATGCAAGTAGTATTGGTCATACATAG 57.506 33.333 0.00 0.00 40.49 2.23
2468 2982 2.891191 TCCCCACATTTAGGTTGGTC 57.109 50.000 0.00 0.00 0.00 4.02
2607 3149 3.994392 TCAAAATGAGTGCTTAGACCGTC 59.006 43.478 0.00 0.00 0.00 4.79
2625 3167 0.469917 TCCTAGGCTACTTGGCATGC 59.530 55.000 9.90 9.90 44.55 4.06
2752 3418 8.607459 GTCTATTTGATGACCTAATGTGTTCAG 58.393 37.037 0.00 0.00 0.00 3.02
2802 3468 4.454504 GCAAAGCTAGCTTTTGTAGTGGTA 59.545 41.667 34.67 0.00 42.93 3.25
2920 3586 8.877864 ATGATAATTTCCACTGACCAGTTTTA 57.122 30.769 0.00 0.00 40.20 1.52
2936 3602 9.325198 GACCAGTTTTAAATTTCATCCTTTTGT 57.675 29.630 0.00 0.00 0.00 2.83
3340 4015 7.674240 GCAATATCGGTGAGTTTCTTGTAGTTC 60.674 40.741 0.00 0.00 0.00 3.01
3341 4016 4.931661 TCGGTGAGTTTCTTGTAGTTCT 57.068 40.909 0.00 0.00 0.00 3.01
3342 4017 5.272283 TCGGTGAGTTTCTTGTAGTTCTT 57.728 39.130 0.00 0.00 0.00 2.52
3343 4018 6.395426 TCGGTGAGTTTCTTGTAGTTCTTA 57.605 37.500 0.00 0.00 0.00 2.10
3344 4019 6.444633 TCGGTGAGTTTCTTGTAGTTCTTAG 58.555 40.000 0.00 0.00 0.00 2.18
3601 4285 1.570857 ATGAAGGTGGGATTGCGGGA 61.571 55.000 0.00 0.00 0.00 5.14
3645 4329 3.055602 GGTGGGTACGTTTCTAAGGATGT 60.056 47.826 0.00 0.00 0.00 3.06
3660 4351 9.745018 TTCTAAGGATGTTCTCTGATGATTTTT 57.255 29.630 0.00 0.00 0.00 1.94
3813 4504 3.521560 TGCCTAGCTTGATTGTAAGACG 58.478 45.455 0.00 0.00 0.00 4.18
4164 4856 5.795972 TCTAACAACCGAAACATATGTCCA 58.204 37.500 9.23 0.00 0.00 4.02
4357 5058 3.560068 CGAAGCCAGTTGTGAAACTAACT 59.440 43.478 0.00 0.00 38.23 2.24
4422 5123 8.936864 CAACTTAGACGATTTTAGAGTCCAAAT 58.063 33.333 0.00 0.00 35.65 2.32
4694 5397 8.998558 GGTAAAATACCGCTATGTATTTGAAC 57.001 34.615 13.30 13.47 45.83 3.18
4887 5590 6.098017 GGATTGGCTTCAGAAAAATCTTCTG 58.902 40.000 7.96 7.96 45.38 3.02
4953 5656 2.020720 TGTGGTACCAGTGTGCTTTTG 58.979 47.619 16.93 0.00 0.00 2.44
4956 5659 2.685897 TGGTACCAGTGTGCTTTTGTTC 59.314 45.455 11.60 0.00 0.00 3.18
5387 6096 4.682401 ACCGTTTTGTGTGTTTTTGTTCTC 59.318 37.500 0.00 0.00 0.00 2.87
5388 6097 4.920927 CCGTTTTGTGTGTTTTTGTTCTCT 59.079 37.500 0.00 0.00 0.00 3.10
5491 6200 5.887598 TCTGCAACAATATATCCTGCTTTGT 59.112 36.000 12.32 0.00 34.10 2.83
5587 6296 0.735978 TCGAGCGTGCATTTCGTGAT 60.736 50.000 14.33 0.00 35.90 3.06
5872 6581 3.224269 AGAGAAATACGAGGAGGCCTAC 58.776 50.000 6.98 6.98 31.76 3.18
5941 6650 4.699735 AGATAGCTAGGACGATCTGTGATG 59.300 45.833 0.00 0.00 31.71 3.07
5970 6684 4.473196 TCAAGTACTGGGGATATTTCTGCA 59.527 41.667 0.00 0.00 0.00 4.41
6080 6794 2.075338 GTGAGAGGCTGAGCTCTTTTG 58.925 52.381 16.19 3.91 32.44 2.44
6083 6797 1.423161 AGAGGCTGAGCTCTTTTGGTT 59.577 47.619 16.19 0.00 0.00 3.67
6167 6883 1.739067 GTGCTCGGCATCTTAACCTT 58.261 50.000 1.90 0.00 41.91 3.50
6168 6884 1.666189 GTGCTCGGCATCTTAACCTTC 59.334 52.381 1.90 0.00 41.91 3.46
6169 6885 1.277842 TGCTCGGCATCTTAACCTTCA 59.722 47.619 0.00 0.00 31.71 3.02
6170 6886 1.936547 GCTCGGCATCTTAACCTTCAG 59.063 52.381 0.00 0.00 0.00 3.02
6171 6887 2.555199 CTCGGCATCTTAACCTTCAGG 58.445 52.381 0.00 0.00 42.17 3.86
6172 6888 1.209504 TCGGCATCTTAACCTTCAGGG 59.790 52.381 0.00 0.00 40.27 4.45
6173 6889 1.393603 GGCATCTTAACCTTCAGGGC 58.606 55.000 0.00 0.00 40.27 5.19
6174 6890 1.393603 GCATCTTAACCTTCAGGGCC 58.606 55.000 0.00 0.00 40.27 5.80
6175 6891 1.064389 GCATCTTAACCTTCAGGGCCT 60.064 52.381 0.00 0.00 40.27 5.19
6176 6892 2.648059 CATCTTAACCTTCAGGGCCTG 58.352 52.381 28.01 28.01 40.27 4.85
6177 6893 1.742308 TCTTAACCTTCAGGGCCTGT 58.258 50.000 31.60 15.72 40.27 4.00
6178 6894 2.062636 TCTTAACCTTCAGGGCCTGTT 58.937 47.619 31.60 20.88 40.27 3.16
6179 6895 2.039879 TCTTAACCTTCAGGGCCTGTTC 59.960 50.000 31.60 0.00 40.27 3.18
6180 6896 0.323629 TAACCTTCAGGGCCTGTTCG 59.676 55.000 31.60 21.04 40.27 3.95
6181 6897 2.045926 CCTTCAGGGCCTGTTCGG 60.046 66.667 31.60 24.27 32.61 4.30
6182 6898 2.592993 CCTTCAGGGCCTGTTCGGA 61.593 63.158 31.60 10.77 32.61 4.55
6183 6899 1.604378 CTTCAGGGCCTGTTCGGAT 59.396 57.895 31.60 0.00 32.61 4.18
6184 6900 0.745845 CTTCAGGGCCTGTTCGGATG 60.746 60.000 31.60 11.53 32.61 3.51
6185 6901 1.198094 TTCAGGGCCTGTTCGGATGA 61.198 55.000 31.60 8.64 32.61 2.92
6186 6902 1.450312 CAGGGCCTGTTCGGATGAC 60.450 63.158 25.74 0.00 33.16 3.06
6187 6903 1.918293 AGGGCCTGTTCGGATGACA 60.918 57.895 4.50 0.00 33.16 3.58
6188 6904 1.450312 GGGCCTGTTCGGATGACAG 60.450 63.158 0.84 3.36 43.19 3.51
6197 6913 5.869350 CTGTTCGGATGACAGGAAAAATAC 58.131 41.667 2.52 0.00 40.58 1.89
6198 6914 5.309638 TGTTCGGATGACAGGAAAAATACA 58.690 37.500 0.00 0.00 0.00 2.29
6199 6915 5.180492 TGTTCGGATGACAGGAAAAATACAC 59.820 40.000 0.00 0.00 0.00 2.90
6200 6916 4.258543 TCGGATGACAGGAAAAATACACC 58.741 43.478 0.00 0.00 0.00 4.16
6201 6917 3.377172 CGGATGACAGGAAAAATACACCC 59.623 47.826 0.00 0.00 0.00 4.61
6202 6918 4.600062 GGATGACAGGAAAAATACACCCT 58.400 43.478 0.00 0.00 0.00 4.34
6203 6919 4.640647 GGATGACAGGAAAAATACACCCTC 59.359 45.833 0.00 0.00 0.00 4.30
6204 6920 4.993705 TGACAGGAAAAATACACCCTCT 57.006 40.909 0.00 0.00 0.00 3.69
6205 6921 6.352737 GGATGACAGGAAAAATACACCCTCTA 60.353 42.308 0.00 0.00 0.00 2.43
6206 6922 5.801380 TGACAGGAAAAATACACCCTCTAC 58.199 41.667 0.00 0.00 0.00 2.59
6207 6923 5.308497 TGACAGGAAAAATACACCCTCTACA 59.692 40.000 0.00 0.00 0.00 2.74
6208 6924 6.183361 TGACAGGAAAAATACACCCTCTACAA 60.183 38.462 0.00 0.00 0.00 2.41
6209 6925 6.238648 ACAGGAAAAATACACCCTCTACAAG 58.761 40.000 0.00 0.00 0.00 3.16
6210 6926 6.183361 ACAGGAAAAATACACCCTCTACAAGT 60.183 38.462 0.00 0.00 0.00 3.16
6211 6927 6.371825 CAGGAAAAATACACCCTCTACAAGTC 59.628 42.308 0.00 0.00 0.00 3.01
6212 6928 6.043938 AGGAAAAATACACCCTCTACAAGTCA 59.956 38.462 0.00 0.00 0.00 3.41
6213 6929 6.713450 GGAAAAATACACCCTCTACAAGTCAA 59.287 38.462 0.00 0.00 0.00 3.18
6214 6930 7.229907 GGAAAAATACACCCTCTACAAGTCAAA 59.770 37.037 0.00 0.00 0.00 2.69
6215 6931 8.528044 AAAAATACACCCTCTACAAGTCAAAA 57.472 30.769 0.00 0.00 0.00 2.44
6216 6932 7.506328 AAATACACCCTCTACAAGTCAAAAC 57.494 36.000 0.00 0.00 0.00 2.43
6217 6933 3.816994 ACACCCTCTACAAGTCAAAACC 58.183 45.455 0.00 0.00 0.00 3.27
6218 6934 3.458487 ACACCCTCTACAAGTCAAAACCT 59.542 43.478 0.00 0.00 0.00 3.50
6219 6935 4.079958 ACACCCTCTACAAGTCAAAACCTT 60.080 41.667 0.00 0.00 0.00 3.50
6220 6936 4.515567 CACCCTCTACAAGTCAAAACCTTC 59.484 45.833 0.00 0.00 0.00 3.46
6221 6937 4.412528 ACCCTCTACAAGTCAAAACCTTCT 59.587 41.667 0.00 0.00 0.00 2.85
6222 6938 4.998033 CCCTCTACAAGTCAAAACCTTCTC 59.002 45.833 0.00 0.00 0.00 2.87
6223 6939 4.998033 CCTCTACAAGTCAAAACCTTCTCC 59.002 45.833 0.00 0.00 0.00 3.71
6224 6940 5.454755 CCTCTACAAGTCAAAACCTTCTCCA 60.455 44.000 0.00 0.00 0.00 3.86
6225 6941 5.996644 TCTACAAGTCAAAACCTTCTCCAA 58.003 37.500 0.00 0.00 0.00 3.53
6226 6942 6.601332 TCTACAAGTCAAAACCTTCTCCAAT 58.399 36.000 0.00 0.00 0.00 3.16
6227 6943 5.774498 ACAAGTCAAAACCTTCTCCAATC 57.226 39.130 0.00 0.00 0.00 2.67
6228 6944 4.584743 ACAAGTCAAAACCTTCTCCAATCC 59.415 41.667 0.00 0.00 0.00 3.01
6229 6945 4.453480 AGTCAAAACCTTCTCCAATCCA 57.547 40.909 0.00 0.00 0.00 3.41
6230 6946 4.145052 AGTCAAAACCTTCTCCAATCCAC 58.855 43.478 0.00 0.00 0.00 4.02
6231 6947 3.255888 GTCAAAACCTTCTCCAATCCACC 59.744 47.826 0.00 0.00 0.00 4.61
6232 6948 2.562738 CAAAACCTTCTCCAATCCACCC 59.437 50.000 0.00 0.00 0.00 4.61
6233 6949 0.704664 AACCTTCTCCAATCCACCCC 59.295 55.000 0.00 0.00 0.00 4.95
6234 6950 0.477597 ACCTTCTCCAATCCACCCCA 60.478 55.000 0.00 0.00 0.00 4.96
6235 6951 0.704076 CCTTCTCCAATCCACCCCAA 59.296 55.000 0.00 0.00 0.00 4.12
6236 6952 1.288932 CCTTCTCCAATCCACCCCAAT 59.711 52.381 0.00 0.00 0.00 3.16
6237 6953 2.659428 CTTCTCCAATCCACCCCAATC 58.341 52.381 0.00 0.00 0.00 2.67
6238 6954 0.926293 TCTCCAATCCACCCCAATCC 59.074 55.000 0.00 0.00 0.00 3.01
6239 6955 0.106015 CTCCAATCCACCCCAATCCC 60.106 60.000 0.00 0.00 0.00 3.85
6240 6956 1.075301 CCAATCCACCCCAATCCCC 60.075 63.158 0.00 0.00 0.00 4.81
6241 6957 1.075301 CAATCCACCCCAATCCCCC 60.075 63.158 0.00 0.00 0.00 5.40
6242 6958 1.230956 AATCCACCCCAATCCCCCT 60.231 57.895 0.00 0.00 0.00 4.79
6243 6959 1.593166 AATCCACCCCAATCCCCCTG 61.593 60.000 0.00 0.00 0.00 4.45
6244 6960 2.823662 ATCCACCCCAATCCCCCTGT 62.824 60.000 0.00 0.00 0.00 4.00
6245 6961 2.360191 CACCCCAATCCCCCTGTG 59.640 66.667 0.00 0.00 0.00 3.66
6246 6962 2.212761 ACCCCAATCCCCCTGTGA 59.787 61.111 0.00 0.00 0.00 3.58
6247 6963 1.930656 ACCCCAATCCCCCTGTGAG 60.931 63.158 0.00 0.00 0.00 3.51
6248 6964 1.619363 CCCCAATCCCCCTGTGAGA 60.619 63.158 0.00 0.00 0.00 3.27
6249 6965 1.214305 CCCCAATCCCCCTGTGAGAA 61.214 60.000 0.00 0.00 0.00 2.87
6250 6966 0.257039 CCCAATCCCCCTGTGAGAAG 59.743 60.000 0.00 0.00 0.00 2.85
6251 6967 0.257039 CCAATCCCCCTGTGAGAAGG 59.743 60.000 0.00 0.00 37.05 3.46
6252 6968 0.995024 CAATCCCCCTGTGAGAAGGT 59.005 55.000 0.00 0.00 35.34 3.50
6253 6969 0.995024 AATCCCCCTGTGAGAAGGTG 59.005 55.000 0.00 0.00 35.34 4.00
6254 6970 0.178861 ATCCCCCTGTGAGAAGGTGT 60.179 55.000 0.00 0.00 35.34 4.16
6255 6971 0.490017 TCCCCCTGTGAGAAGGTGTA 59.510 55.000 0.00 0.00 35.34 2.90
6256 6972 1.132657 TCCCCCTGTGAGAAGGTGTAA 60.133 52.381 0.00 0.00 35.34 2.41
6257 6973 1.003233 CCCCCTGTGAGAAGGTGTAAC 59.997 57.143 0.00 0.00 35.34 2.50
6276 6992 1.613437 ACCGAACAAAGCCTCAAATGG 59.387 47.619 0.00 0.00 0.00 3.16
6326 7042 0.941463 GCCTCGTGCGACTGGATATG 60.941 60.000 4.39 0.00 0.00 1.78
6450 7174 7.936496 TTTAGATGTTTTGTGCCATATCTCA 57.064 32.000 0.00 0.00 0.00 3.27
6497 7222 6.410540 ACTCTGAATAGTCAAGAATCAACCC 58.589 40.000 8.62 0.00 31.88 4.11
6604 8264 1.366319 AGGTGGAGACTTGCTGGATT 58.634 50.000 0.00 0.00 0.00 3.01
6605 8265 1.707427 AGGTGGAGACTTGCTGGATTT 59.293 47.619 0.00 0.00 0.00 2.17
6606 8266 1.815003 GGTGGAGACTTGCTGGATTTG 59.185 52.381 0.00 0.00 0.00 2.32
6607 8267 1.200948 GTGGAGACTTGCTGGATTTGC 59.799 52.381 0.00 0.00 0.00 3.68
6608 8268 0.449388 GGAGACTTGCTGGATTTGCG 59.551 55.000 0.00 0.00 0.00 4.85
6609 8269 1.160137 GAGACTTGCTGGATTTGCGT 58.840 50.000 0.00 0.00 0.00 5.24
6610 8270 0.877071 AGACTTGCTGGATTTGCGTG 59.123 50.000 0.00 0.00 0.00 5.34
6611 8271 0.874390 GACTTGCTGGATTTGCGTGA 59.126 50.000 0.00 0.00 0.00 4.35
6612 8272 0.877071 ACTTGCTGGATTTGCGTGAG 59.123 50.000 0.00 0.00 0.00 3.51
6614 8274 1.865788 TTGCTGGATTTGCGTGAGGC 61.866 55.000 0.00 0.00 43.96 4.70
6659 8319 2.822827 CGTCCTCGTGTTTTGATTTCG 58.177 47.619 0.00 0.00 0.00 3.46
6660 8320 2.411031 CGTCCTCGTGTTTTGATTTCGG 60.411 50.000 0.00 0.00 0.00 4.30
6675 8335 2.033602 CGGTGAGGGGTTTGGTCC 59.966 66.667 0.00 0.00 0.00 4.46
6687 8347 2.786512 TTTGGTCCAGGATGCCAGGC 62.787 60.000 3.66 3.66 33.41 4.85
6742 8404 2.887568 GCGAGTCTCATGGTGGCG 60.888 66.667 0.00 0.00 0.00 5.69
6758 8420 2.906897 CGGTGGTGGCTGCACTTT 60.907 61.111 0.50 0.00 0.00 2.66
6767 8429 0.317854 GGCTGCACTTTTTGGTCGAC 60.318 55.000 7.13 7.13 0.00 4.20
6771 8433 2.210116 TGCACTTTTTGGTCGACTCTC 58.790 47.619 16.46 0.00 0.00 3.20
6779 8441 1.627864 TGGTCGACTCTCATGGTGAA 58.372 50.000 16.46 0.00 0.00 3.18
6784 8446 1.546029 CGACTCTCATGGTGAAGGTGA 59.454 52.381 0.00 0.00 0.00 4.02
6792 8454 2.048603 GGTGAAGGTGATGGCTGCC 61.049 63.158 12.87 12.87 0.00 4.85
6793 8455 1.303561 GTGAAGGTGATGGCTGCCA 60.304 57.895 25.65 25.65 38.19 4.92
6794 8456 1.001764 TGAAGGTGATGGCTGCCAG 60.002 57.895 27.20 0.00 36.75 4.85
6795 8457 1.001641 GAAGGTGATGGCTGCCAGT 60.002 57.895 27.20 14.78 36.75 4.00
6796 8458 1.303888 AAGGTGATGGCTGCCAGTG 60.304 57.895 27.20 0.00 36.75 3.66
6797 8459 2.753043 GGTGATGGCTGCCAGTGG 60.753 66.667 27.20 4.20 36.75 4.00
6815 8477 2.985896 TGGCGGAGTCAGAAATTAAGG 58.014 47.619 0.00 0.00 36.97 2.69
6816 8478 2.569853 TGGCGGAGTCAGAAATTAAGGA 59.430 45.455 0.00 0.00 36.97 3.36
6817 8479 3.199946 TGGCGGAGTCAGAAATTAAGGAT 59.800 43.478 0.00 0.00 36.97 3.24
6818 8480 3.810386 GGCGGAGTCAGAAATTAAGGATC 59.190 47.826 0.00 0.00 0.00 3.36
6819 8481 4.442706 GCGGAGTCAGAAATTAAGGATCA 58.557 43.478 0.00 0.00 0.00 2.92
6820 8482 4.509600 GCGGAGTCAGAAATTAAGGATCAG 59.490 45.833 0.00 0.00 0.00 2.90
6821 8483 5.053145 CGGAGTCAGAAATTAAGGATCAGG 58.947 45.833 0.00 0.00 0.00 3.86
6822 8484 5.372373 GGAGTCAGAAATTAAGGATCAGGG 58.628 45.833 0.00 0.00 0.00 4.45
6823 8485 5.372373 GAGTCAGAAATTAAGGATCAGGGG 58.628 45.833 0.00 0.00 0.00 4.79
6824 8486 4.166919 AGTCAGAAATTAAGGATCAGGGGG 59.833 45.833 0.00 0.00 0.00 5.40
6841 8503 2.536066 GGGGGCCAAATAACTCAAAGT 58.464 47.619 4.39 0.00 0.00 2.66
6842 8504 2.903784 GGGGGCCAAATAACTCAAAGTT 59.096 45.455 4.39 0.00 41.97 2.66
6843 8505 3.326588 GGGGGCCAAATAACTCAAAGTTT 59.673 43.478 4.39 0.00 39.51 2.66
6844 8506 4.562757 GGGGGCCAAATAACTCAAAGTTTC 60.563 45.833 4.39 0.00 39.51 2.78
6845 8507 4.039852 GGGGCCAAATAACTCAAAGTTTCA 59.960 41.667 4.39 0.00 39.51 2.69
6846 8508 5.454045 GGGGCCAAATAACTCAAAGTTTCAA 60.454 40.000 4.39 0.00 39.51 2.69
6847 8509 6.230472 GGGCCAAATAACTCAAAGTTTCAAT 58.770 36.000 4.39 0.00 39.51 2.57
6848 8510 7.382898 GGGCCAAATAACTCAAAGTTTCAATA 58.617 34.615 4.39 0.00 39.51 1.90
6849 8511 7.875554 GGGCCAAATAACTCAAAGTTTCAATAA 59.124 33.333 4.39 0.00 39.51 1.40
6850 8512 8.708742 GGCCAAATAACTCAAAGTTTCAATAAC 58.291 33.333 0.00 0.00 39.51 1.89
6851 8513 9.255304 GCCAAATAACTCAAAGTTTCAATAACA 57.745 29.630 0.00 0.00 39.51 2.41
6854 8516 9.981114 AAATAACTCAAAGTTTCAATAACAGGG 57.019 29.630 0.00 0.00 39.51 4.45
6855 8517 6.405278 AACTCAAAGTTTCAATAACAGGGG 57.595 37.500 0.00 0.00 34.11 4.79
6856 8518 4.280929 ACTCAAAGTTTCAATAACAGGGGC 59.719 41.667 0.00 0.00 0.00 5.80
6857 8519 3.576550 TCAAAGTTTCAATAACAGGGGCC 59.423 43.478 0.00 0.00 0.00 5.80
6858 8520 2.990740 AGTTTCAATAACAGGGGCCA 57.009 45.000 4.39 0.00 0.00 5.36
6859 8521 3.252554 AGTTTCAATAACAGGGGCCAA 57.747 42.857 4.39 0.00 0.00 4.52
6860 8522 3.582164 AGTTTCAATAACAGGGGCCAAA 58.418 40.909 4.39 0.00 0.00 3.28
6861 8523 3.323691 AGTTTCAATAACAGGGGCCAAAC 59.676 43.478 4.39 3.96 0.00 2.93
6862 8524 2.685106 TCAATAACAGGGGCCAAACA 57.315 45.000 4.39 0.00 0.00 2.83
6863 8525 2.964209 TCAATAACAGGGGCCAAACAA 58.036 42.857 4.39 0.00 0.00 2.83
6864 8526 3.515562 TCAATAACAGGGGCCAAACAAT 58.484 40.909 4.39 0.00 0.00 2.71
6865 8527 4.678256 TCAATAACAGGGGCCAAACAATA 58.322 39.130 4.39 0.00 0.00 1.90
6866 8528 4.464597 TCAATAACAGGGGCCAAACAATAC 59.535 41.667 4.39 0.00 0.00 1.89
6867 8529 2.694616 AACAGGGGCCAAACAATACT 57.305 45.000 4.39 0.00 0.00 2.12
6868 8530 3.818295 AACAGGGGCCAAACAATACTA 57.182 42.857 4.39 0.00 0.00 1.82
6869 8531 3.818295 ACAGGGGCCAAACAATACTAA 57.182 42.857 4.39 0.00 0.00 2.24
6870 8532 4.331159 ACAGGGGCCAAACAATACTAAT 57.669 40.909 4.39 0.00 0.00 1.73
6871 8533 5.459982 ACAGGGGCCAAACAATACTAATA 57.540 39.130 4.39 0.00 0.00 0.98
6872 8534 5.198207 ACAGGGGCCAAACAATACTAATAC 58.802 41.667 4.39 0.00 0.00 1.89
6873 8535 5.197451 CAGGGGCCAAACAATACTAATACA 58.803 41.667 4.39 0.00 0.00 2.29
6874 8536 5.833131 CAGGGGCCAAACAATACTAATACAT 59.167 40.000 4.39 0.00 0.00 2.29
6875 8537 7.001674 CAGGGGCCAAACAATACTAATACATA 58.998 38.462 4.39 0.00 0.00 2.29
6876 8538 7.669722 CAGGGGCCAAACAATACTAATACATAT 59.330 37.037 4.39 0.00 0.00 1.78
6877 8539 8.896658 AGGGGCCAAACAATACTAATACATATA 58.103 33.333 4.39 0.00 0.00 0.86
6878 8540 9.695155 GGGGCCAAACAATACTAATACATATAT 57.305 33.333 4.39 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 1.303317 AAAGAGGATGCCCGCGTTT 60.303 52.632 4.92 0.00 37.33 3.60
156 157 4.580868 TGCCTGGAAATTAACGTGACATA 58.419 39.130 0.00 0.00 0.00 2.29
170 171 2.682856 GACGCATATTTCTTGCCTGGAA 59.317 45.455 0.00 0.00 36.75 3.53
184 185 3.612423 CACTGTGATTTCTTCGACGCATA 59.388 43.478 0.32 0.00 0.00 3.14
202 203 2.342650 CGTCCCCAAATGGCCACTG 61.343 63.158 8.16 8.91 0.00 3.66
211 212 1.611491 GATTGCTTTGACGTCCCCAAA 59.389 47.619 14.12 6.91 33.12 3.28
216 217 3.300009 CAAACAGATTGCTTTGACGTCC 58.700 45.455 14.12 0.00 31.00 4.79
218 219 2.543653 GCCAAACAGATTGCTTTGACGT 60.544 45.455 0.00 0.00 37.73 4.34
234 235 6.403866 AATTTCAGTGTTCACATAGCCAAA 57.596 33.333 5.74 0.00 0.00 3.28
240 241 8.096621 TCCCCTATAATTTCAGTGTTCACATA 57.903 34.615 5.74 0.00 0.00 2.29
261 262 4.506255 CCGGCCACCTCAATCCCC 62.506 72.222 2.24 0.00 0.00 4.81
276 277 2.532531 CAGTGTGCTGAAAATAGCCG 57.467 50.000 0.00 0.00 45.28 5.52
300 301 2.299013 CGCCCACTCATAGCACCTTATA 59.701 50.000 0.00 0.00 0.00 0.98
310 311 3.620427 AAACACATACGCCCACTCATA 57.380 42.857 0.00 0.00 0.00 2.15
336 337 0.530211 CGGAGCTTGAGATGGCAGAG 60.530 60.000 0.00 0.00 0.00 3.35
405 409 5.239525 AGAAACAGAGCCACATGAGTTAAAC 59.760 40.000 0.00 0.00 0.00 2.01
407 411 4.973168 AGAAACAGAGCCACATGAGTTAA 58.027 39.130 0.00 0.00 0.00 2.01
422 426 4.142838 TGTGCTCATTTGCGATAGAAACAG 60.143 41.667 0.00 0.00 29.09 3.16
710 715 3.839432 GGGGCTCTTCGTCTCCGG 61.839 72.222 0.00 0.00 33.95 5.14
744 749 0.844221 AGGGCAGCCTCCTCTTTCTT 60.844 55.000 12.43 0.00 0.00 2.52
745 750 0.043334 TAGGGCAGCCTCCTCTTTCT 59.957 55.000 12.43 0.00 35.92 2.52
746 751 0.179234 GTAGGGCAGCCTCCTCTTTC 59.821 60.000 12.43 0.00 35.92 2.62
747 752 1.617947 CGTAGGGCAGCCTCCTCTTT 61.618 60.000 12.43 0.00 35.92 2.52
748 753 2.060980 CGTAGGGCAGCCTCCTCTT 61.061 63.158 12.43 0.00 35.92 2.85
749 754 2.443016 CGTAGGGCAGCCTCCTCT 60.443 66.667 12.43 1.83 35.92 3.69
803 808 3.860930 ATTCCCACCACCACACCGC 62.861 63.158 0.00 0.00 0.00 5.68
853 858 2.771639 CGAGGCCGTGTGCTAGCTA 61.772 63.158 17.23 1.87 40.92 3.32
854 859 4.135153 CGAGGCCGTGTGCTAGCT 62.135 66.667 17.23 0.00 40.92 3.32
905 910 1.435346 AAAAGCCCAGCCCAGTAGGT 61.435 55.000 0.00 0.00 38.26 3.08
942 947 5.567138 AACTAGAAATTCGATGCAAAGGG 57.433 39.130 0.00 0.00 0.00 3.95
948 953 8.541312 GGTAGTAGAAAACTAGAAATTCGATGC 58.459 37.037 0.00 0.00 41.42 3.91
949 954 9.032420 GGGTAGTAGAAAACTAGAAATTCGATG 57.968 37.037 0.00 0.00 41.42 3.84
950 955 8.202811 GGGGTAGTAGAAAACTAGAAATTCGAT 58.797 37.037 0.00 0.00 41.42 3.59
951 956 7.178983 TGGGGTAGTAGAAAACTAGAAATTCGA 59.821 37.037 0.00 0.00 41.42 3.71
953 958 8.319881 ACTGGGGTAGTAGAAAACTAGAAATTC 58.680 37.037 0.00 0.00 41.42 2.17
954 959 8.215954 ACTGGGGTAGTAGAAAACTAGAAATT 57.784 34.615 0.00 0.00 41.42 1.82
955 960 7.092979 GGACTGGGGTAGTAGAAAACTAGAAAT 60.093 40.741 0.00 0.00 41.42 2.17
956 961 6.212187 GGACTGGGGTAGTAGAAAACTAGAAA 59.788 42.308 0.00 0.00 41.42 2.52
958 963 5.222400 TGGACTGGGGTAGTAGAAAACTAGA 60.222 44.000 0.00 0.00 41.42 2.43
959 964 5.021458 TGGACTGGGGTAGTAGAAAACTAG 58.979 45.833 0.00 0.00 41.42 2.57
960 965 5.014534 TGGACTGGGGTAGTAGAAAACTA 57.985 43.478 0.00 0.00 40.53 2.24
961 966 3.865571 TGGACTGGGGTAGTAGAAAACT 58.134 45.455 0.00 0.00 40.53 2.66
962 967 4.628963 TTGGACTGGGGTAGTAGAAAAC 57.371 45.455 0.00 0.00 40.53 2.43
984 993 1.376424 CATGTGCGAGCTTGGTCCT 60.376 57.895 2.37 0.00 0.00 3.85
1385 1406 0.250234 CTGATCTCCGCACCCTGAAA 59.750 55.000 0.00 0.00 0.00 2.69
1431 1464 4.997395 TGAACTTATCAGTGAGCTTCCAAC 59.003 41.667 0.00 0.00 31.60 3.77
1565 1913 3.798202 AGTCTCAAGTCAGTGTTGTTCC 58.202 45.455 0.00 0.00 0.00 3.62
1566 1914 6.216569 TCATAGTCTCAAGTCAGTGTTGTTC 58.783 40.000 0.00 0.00 0.00 3.18
1569 1917 6.162079 ACATCATAGTCTCAAGTCAGTGTTG 58.838 40.000 0.00 0.00 0.00 3.33
1570 1918 6.352016 ACATCATAGTCTCAAGTCAGTGTT 57.648 37.500 0.00 0.00 0.00 3.32
1577 1948 5.719085 AGTGGAGAACATCATAGTCTCAAGT 59.281 40.000 2.64 0.00 0.00 3.16
1632 2004 0.962356 GCTCTAGCCTGCAGCCAAAA 60.962 55.000 8.66 0.00 45.47 2.44
1659 2031 7.041107 TCATCAAATACTCGACATGTTGATCA 58.959 34.615 16.26 7.63 34.37 2.92
1665 2037 5.586243 CCCTTTCATCAAATACTCGACATGT 59.414 40.000 0.00 0.00 0.00 3.21
1682 2058 0.254178 GAGATGCCTCAGCCCTTTCA 59.746 55.000 0.00 0.00 39.24 2.69
1806 2182 0.323629 TAACCAAGGCCGACTGGAAG 59.676 55.000 23.59 3.00 42.29 3.46
2196 2576 5.709164 AGAGCATATTGTCTCAGCAACTTTT 59.291 36.000 0.00 0.00 0.00 2.27
2258 2751 6.491745 TGACCAATACTACTTGCATTTTTCCA 59.508 34.615 0.00 0.00 0.00 3.53
2290 2783 4.216411 TGGGTATCTCCAGTGCTTTAAC 57.784 45.455 0.00 0.00 38.11 2.01
2607 3149 0.471617 AGCATGCCAAGTAGCCTAGG 59.528 55.000 15.66 3.67 0.00 3.02
2657 3200 8.542080 TCCGAAGTTCTTATAACCCTAAAATGA 58.458 33.333 0.56 0.00 0.00 2.57
2752 3418 3.604582 ACAGCAGGCTTCTTGAGTTATC 58.395 45.455 0.00 0.00 0.00 1.75
2802 3468 4.887655 ACTTCCAAAAGACGGAGAAACAAT 59.112 37.500 0.00 0.00 36.30 2.71
2866 3532 6.604735 ATGAGTAGATAAACATGAAACGGC 57.395 37.500 0.00 0.00 0.00 5.68
2903 3569 7.411486 TGAAATTTAAAACTGGTCAGTGGAA 57.589 32.000 4.22 0.00 41.58 3.53
2920 3586 8.267183 AGAAAGGTGAACAAAAGGATGAAATTT 58.733 29.630 0.00 0.00 0.00 1.82
3050 3717 6.428385 AAATAACATCTTTCTCCAAGAGCG 57.572 37.500 0.00 0.00 45.11 5.03
3813 4504 5.898397 ACTGAATAAAGTAGTAGGAGGGGTC 59.102 44.000 0.00 0.00 0.00 4.46
3855 4546 6.015519 ACCAAAATTAGCACACACACATACAT 60.016 34.615 0.00 0.00 0.00 2.29
4014 4706 1.197721 CAGGTTGCAACTCGGACAATC 59.802 52.381 27.64 8.87 0.00 2.67
4164 4856 2.490991 GGTCGTTAGAGGTTGCAACTT 58.509 47.619 27.64 21.86 0.00 2.66
4245 4937 8.696374 TCTCTTTCTTCTCTCTTTACAGTTTCA 58.304 33.333 0.00 0.00 0.00 2.69
4357 5058 1.344114 ACCGTCCGCTTTACAACCTTA 59.656 47.619 0.00 0.00 0.00 2.69
4422 5123 6.872920 ACTATTGCAAAAGTCAACTTCCAAA 58.127 32.000 1.71 0.00 34.61 3.28
4694 5397 3.755378 AGCAGAACATGTGGCTTAAGAAG 59.245 43.478 6.67 0.00 31.34 2.85
4887 5590 8.512138 AGTATTGAGCACAAAATACTTACCAAC 58.488 33.333 0.00 0.00 43.70 3.77
5098 5801 6.154445 CCAACTCATCACAATTCCAAAAGAG 58.846 40.000 0.00 0.00 0.00 2.85
5102 5805 3.577848 CCCCAACTCATCACAATTCCAAA 59.422 43.478 0.00 0.00 0.00 3.28
5387 6096 6.091849 CCAATCTTCGCATAATCCACTATCAG 59.908 42.308 0.00 0.00 0.00 2.90
5388 6097 5.934043 CCAATCTTCGCATAATCCACTATCA 59.066 40.000 0.00 0.00 0.00 2.15
5587 6296 8.821686 TTTCAAAGCTGAAGAATTATATCCCA 57.178 30.769 0.00 0.00 42.48 4.37
5635 6344 3.457234 CTGTGTGTTTCAGCAGTAGACA 58.543 45.455 0.00 0.00 0.00 3.41
5872 6581 1.383744 CACTCGCTCGAAAAGAACTCG 59.616 52.381 0.00 0.00 37.66 4.18
5941 6650 0.690762 TCCCCAGTACTTGAAGCCAC 59.309 55.000 0.00 0.00 0.00 5.01
6080 6794 1.485066 ACATCCCCGAGACATGTAACC 59.515 52.381 0.00 0.00 0.00 2.85
6083 6797 4.651962 TCAATAACATCCCCGAGACATGTA 59.348 41.667 0.00 0.00 30.37 2.29
6167 6883 1.612146 TCATCCGAACAGGCCCTGA 60.612 57.895 19.90 0.00 40.77 3.86
6168 6884 1.450312 GTCATCCGAACAGGCCCTG 60.450 63.158 9.83 9.83 40.77 4.45
6169 6885 1.903877 CTGTCATCCGAACAGGCCCT 61.904 60.000 0.00 0.00 40.36 5.19
6170 6886 1.450312 CTGTCATCCGAACAGGCCC 60.450 63.158 0.00 0.00 40.36 5.80
6171 6887 4.208632 CTGTCATCCGAACAGGCC 57.791 61.111 0.00 0.00 40.36 5.19
6174 6890 5.411361 TGTATTTTTCCTGTCATCCGAACAG 59.589 40.000 0.00 0.00 43.04 3.16
6175 6891 5.180492 GTGTATTTTTCCTGTCATCCGAACA 59.820 40.000 0.00 0.00 0.00 3.18
6176 6892 5.391629 GGTGTATTTTTCCTGTCATCCGAAC 60.392 44.000 0.00 0.00 0.00 3.95
6177 6893 4.698304 GGTGTATTTTTCCTGTCATCCGAA 59.302 41.667 0.00 0.00 0.00 4.30
6178 6894 4.258543 GGTGTATTTTTCCTGTCATCCGA 58.741 43.478 0.00 0.00 0.00 4.55
6179 6895 3.377172 GGGTGTATTTTTCCTGTCATCCG 59.623 47.826 0.00 0.00 0.00 4.18
6180 6896 4.600062 AGGGTGTATTTTTCCTGTCATCC 58.400 43.478 0.00 0.00 0.00 3.51
6181 6897 5.501156 AGAGGGTGTATTTTTCCTGTCATC 58.499 41.667 0.00 0.00 0.00 2.92
6182 6898 5.520748 AGAGGGTGTATTTTTCCTGTCAT 57.479 39.130 0.00 0.00 0.00 3.06
6183 6899 4.993705 AGAGGGTGTATTTTTCCTGTCA 57.006 40.909 0.00 0.00 0.00 3.58
6184 6900 5.801380 TGTAGAGGGTGTATTTTTCCTGTC 58.199 41.667 0.00 0.00 0.00 3.51
6185 6901 5.836024 TGTAGAGGGTGTATTTTTCCTGT 57.164 39.130 0.00 0.00 0.00 4.00
6186 6902 6.238648 ACTTGTAGAGGGTGTATTTTTCCTG 58.761 40.000 0.00 0.00 0.00 3.86
6187 6903 6.043938 TGACTTGTAGAGGGTGTATTTTTCCT 59.956 38.462 0.00 0.00 0.00 3.36
6188 6904 6.235664 TGACTTGTAGAGGGTGTATTTTTCC 58.764 40.000 0.00 0.00 0.00 3.13
6189 6905 7.739498 TTGACTTGTAGAGGGTGTATTTTTC 57.261 36.000 0.00 0.00 0.00 2.29
6190 6906 8.410912 GTTTTGACTTGTAGAGGGTGTATTTTT 58.589 33.333 0.00 0.00 0.00 1.94
6191 6907 7.013942 GGTTTTGACTTGTAGAGGGTGTATTTT 59.986 37.037 0.00 0.00 0.00 1.82
6192 6908 6.489022 GGTTTTGACTTGTAGAGGGTGTATTT 59.511 38.462 0.00 0.00 0.00 1.40
6193 6909 6.002082 GGTTTTGACTTGTAGAGGGTGTATT 58.998 40.000 0.00 0.00 0.00 1.89
6194 6910 5.309806 AGGTTTTGACTTGTAGAGGGTGTAT 59.690 40.000 0.00 0.00 0.00 2.29
6195 6911 4.657039 AGGTTTTGACTTGTAGAGGGTGTA 59.343 41.667 0.00 0.00 0.00 2.90
6196 6912 3.458487 AGGTTTTGACTTGTAGAGGGTGT 59.542 43.478 0.00 0.00 0.00 4.16
6197 6913 4.086706 AGGTTTTGACTTGTAGAGGGTG 57.913 45.455 0.00 0.00 0.00 4.61
6198 6914 4.412528 AGAAGGTTTTGACTTGTAGAGGGT 59.587 41.667 0.00 0.00 0.00 4.34
6199 6915 4.974399 AGAAGGTTTTGACTTGTAGAGGG 58.026 43.478 0.00 0.00 0.00 4.30
6200 6916 4.998033 GGAGAAGGTTTTGACTTGTAGAGG 59.002 45.833 0.00 0.00 0.00 3.69
6201 6917 5.611374 TGGAGAAGGTTTTGACTTGTAGAG 58.389 41.667 0.00 0.00 0.00 2.43
6202 6918 5.623956 TGGAGAAGGTTTTGACTTGTAGA 57.376 39.130 0.00 0.00 0.00 2.59
6203 6919 6.072452 GGATTGGAGAAGGTTTTGACTTGTAG 60.072 42.308 0.00 0.00 0.00 2.74
6204 6920 5.768164 GGATTGGAGAAGGTTTTGACTTGTA 59.232 40.000 0.00 0.00 0.00 2.41
6205 6921 4.584743 GGATTGGAGAAGGTTTTGACTTGT 59.415 41.667 0.00 0.00 0.00 3.16
6206 6922 4.584325 TGGATTGGAGAAGGTTTTGACTTG 59.416 41.667 0.00 0.00 0.00 3.16
6207 6923 4.584743 GTGGATTGGAGAAGGTTTTGACTT 59.415 41.667 0.00 0.00 0.00 3.01
6208 6924 4.145052 GTGGATTGGAGAAGGTTTTGACT 58.855 43.478 0.00 0.00 0.00 3.41
6209 6925 3.255888 GGTGGATTGGAGAAGGTTTTGAC 59.744 47.826 0.00 0.00 0.00 3.18
6210 6926 3.496331 GGTGGATTGGAGAAGGTTTTGA 58.504 45.455 0.00 0.00 0.00 2.69
6211 6927 2.562738 GGGTGGATTGGAGAAGGTTTTG 59.437 50.000 0.00 0.00 0.00 2.44
6212 6928 2.492753 GGGGTGGATTGGAGAAGGTTTT 60.493 50.000 0.00 0.00 0.00 2.43
6213 6929 1.077169 GGGGTGGATTGGAGAAGGTTT 59.923 52.381 0.00 0.00 0.00 3.27
6214 6930 0.704664 GGGGTGGATTGGAGAAGGTT 59.295 55.000 0.00 0.00 0.00 3.50
6215 6931 0.477597 TGGGGTGGATTGGAGAAGGT 60.478 55.000 0.00 0.00 0.00 3.50
6216 6932 0.704076 TTGGGGTGGATTGGAGAAGG 59.296 55.000 0.00 0.00 0.00 3.46
6217 6933 2.659428 GATTGGGGTGGATTGGAGAAG 58.341 52.381 0.00 0.00 0.00 2.85
6218 6934 1.287739 GGATTGGGGTGGATTGGAGAA 59.712 52.381 0.00 0.00 0.00 2.87
6219 6935 0.926293 GGATTGGGGTGGATTGGAGA 59.074 55.000 0.00 0.00 0.00 3.71
6220 6936 0.106015 GGGATTGGGGTGGATTGGAG 60.106 60.000 0.00 0.00 0.00 3.86
6221 6937 1.589399 GGGGATTGGGGTGGATTGGA 61.589 60.000 0.00 0.00 0.00 3.53
6222 6938 1.075301 GGGGATTGGGGTGGATTGG 60.075 63.158 0.00 0.00 0.00 3.16
6223 6939 1.075301 GGGGGATTGGGGTGGATTG 60.075 63.158 0.00 0.00 0.00 2.67
6224 6940 1.230956 AGGGGGATTGGGGTGGATT 60.231 57.895 0.00 0.00 0.00 3.01
6225 6941 2.014550 CAGGGGGATTGGGGTGGAT 61.015 63.158 0.00 0.00 0.00 3.41
6226 6942 2.616893 CAGGGGGATTGGGGTGGA 60.617 66.667 0.00 0.00 0.00 4.02
6227 6943 2.946650 ACAGGGGGATTGGGGTGG 60.947 66.667 0.00 0.00 0.00 4.61
6228 6944 2.215451 CTCACAGGGGGATTGGGGTG 62.215 65.000 0.00 0.00 0.00 4.61
6229 6945 1.930656 CTCACAGGGGGATTGGGGT 60.931 63.158 0.00 0.00 0.00 4.95
6230 6946 1.214305 TTCTCACAGGGGGATTGGGG 61.214 60.000 0.00 0.00 0.00 4.96
6231 6947 0.257039 CTTCTCACAGGGGGATTGGG 59.743 60.000 0.00 0.00 0.00 4.12
6232 6948 0.257039 CCTTCTCACAGGGGGATTGG 59.743 60.000 0.00 0.00 0.00 3.16
6233 6949 0.995024 ACCTTCTCACAGGGGGATTG 59.005 55.000 0.00 0.00 38.42 2.67
6234 6950 0.995024 CACCTTCTCACAGGGGGATT 59.005 55.000 0.00 0.00 38.42 3.01
6235 6951 0.178861 ACACCTTCTCACAGGGGGAT 60.179 55.000 0.00 0.00 42.47 3.85
6236 6952 0.490017 TACACCTTCTCACAGGGGGA 59.510 55.000 0.00 0.00 42.47 4.81
6237 6953 1.003233 GTTACACCTTCTCACAGGGGG 59.997 57.143 0.00 0.00 42.47 5.40
6238 6954 1.003233 GGTTACACCTTCTCACAGGGG 59.997 57.143 0.00 0.00 44.00 4.79
6239 6955 1.337823 CGGTTACACCTTCTCACAGGG 60.338 57.143 0.00 0.00 38.42 4.45
6240 6956 1.616865 TCGGTTACACCTTCTCACAGG 59.383 52.381 0.00 0.00 40.23 4.00
6241 6957 3.057734 GTTCGGTTACACCTTCTCACAG 58.942 50.000 0.00 0.00 35.66 3.66
6242 6958 2.431419 TGTTCGGTTACACCTTCTCACA 59.569 45.455 0.00 0.00 35.66 3.58
6243 6959 3.102052 TGTTCGGTTACACCTTCTCAC 57.898 47.619 0.00 0.00 35.66 3.51
6244 6960 3.823281 TTGTTCGGTTACACCTTCTCA 57.177 42.857 0.00 0.00 35.66 3.27
6245 6961 3.059120 GCTTTGTTCGGTTACACCTTCTC 60.059 47.826 0.00 0.00 35.66 2.87
6246 6962 2.876550 GCTTTGTTCGGTTACACCTTCT 59.123 45.455 0.00 0.00 35.66 2.85
6247 6963 2.031420 GGCTTTGTTCGGTTACACCTTC 60.031 50.000 0.00 0.00 35.66 3.46
6248 6964 1.951602 GGCTTTGTTCGGTTACACCTT 59.048 47.619 0.00 0.00 35.66 3.50
6249 6965 1.142262 AGGCTTTGTTCGGTTACACCT 59.858 47.619 0.00 0.00 35.66 4.00
6250 6966 1.534163 GAGGCTTTGTTCGGTTACACC 59.466 52.381 0.00 0.00 34.05 4.16
6251 6967 2.215196 TGAGGCTTTGTTCGGTTACAC 58.785 47.619 0.00 0.00 0.00 2.90
6252 6968 2.623878 TGAGGCTTTGTTCGGTTACA 57.376 45.000 0.00 0.00 0.00 2.41
6253 6969 3.974871 TTTGAGGCTTTGTTCGGTTAC 57.025 42.857 0.00 0.00 0.00 2.50
6254 6970 3.254657 CCATTTGAGGCTTTGTTCGGTTA 59.745 43.478 0.00 0.00 0.00 2.85
6255 6971 2.035832 CCATTTGAGGCTTTGTTCGGTT 59.964 45.455 0.00 0.00 0.00 4.44
6256 6972 1.613437 CCATTTGAGGCTTTGTTCGGT 59.387 47.619 0.00 0.00 0.00 4.69
6257 6973 1.885887 TCCATTTGAGGCTTTGTTCGG 59.114 47.619 0.00 0.00 0.00 4.30
6258 6974 3.308530 GTTCCATTTGAGGCTTTGTTCG 58.691 45.455 0.00 0.00 0.00 3.95
6259 6975 3.243401 ACGTTCCATTTGAGGCTTTGTTC 60.243 43.478 0.00 0.00 0.00 3.18
6260 6976 2.693074 ACGTTCCATTTGAGGCTTTGTT 59.307 40.909 0.00 0.00 0.00 2.83
6261 6977 2.306847 ACGTTCCATTTGAGGCTTTGT 58.693 42.857 0.00 0.00 0.00 2.83
6262 6978 3.052036 CAACGTTCCATTTGAGGCTTTG 58.948 45.455 0.00 0.00 0.00 2.77
6263 6979 2.035832 CCAACGTTCCATTTGAGGCTTT 59.964 45.455 0.00 0.00 0.00 3.51
6264 6980 1.613437 CCAACGTTCCATTTGAGGCTT 59.387 47.619 0.00 0.00 0.00 4.35
6265 6981 1.202879 TCCAACGTTCCATTTGAGGCT 60.203 47.619 0.00 0.00 0.00 4.58
6266 6982 1.243902 TCCAACGTTCCATTTGAGGC 58.756 50.000 0.00 0.00 0.00 4.70
6267 6983 3.627577 CCTATCCAACGTTCCATTTGAGG 59.372 47.826 0.00 0.00 0.00 3.86
6268 6984 4.513442 TCCTATCCAACGTTCCATTTGAG 58.487 43.478 0.00 0.00 0.00 3.02
6276 6992 5.006746 CACATAGCTTTCCTATCCAACGTTC 59.993 44.000 0.00 0.00 34.49 3.95
6326 7042 0.032403 TGCATTGCCACTTTGTGAGC 59.968 50.000 6.12 2.39 35.23 4.26
6450 7174 9.225436 GAGTTGAAATATGGACTTCTCTCTTTT 57.775 33.333 0.00 0.00 0.00 2.27
6497 7222 2.125673 CCTACGCCTTGGACGGTG 60.126 66.667 7.97 0.00 40.39 4.94
6551 7286 3.257933 GCCAAGCCACACGAAGAG 58.742 61.111 0.00 0.00 0.00 2.85
6573 7308 2.036387 TCTCCACCTTGACTTGACGAA 58.964 47.619 0.00 0.00 0.00 3.85
6574 7309 1.340248 GTCTCCACCTTGACTTGACGA 59.660 52.381 0.00 0.00 0.00 4.20
6575 7310 1.341531 AGTCTCCACCTTGACTTGACG 59.658 52.381 0.00 0.00 40.21 4.35
6604 8264 4.927782 AGCAACCGCCTCACGCAA 62.928 61.111 0.00 0.00 41.76 4.85
6605 8265 4.927782 AAGCAACCGCCTCACGCA 62.928 61.111 0.00 0.00 41.76 5.24
6606 8266 4.090057 GAAGCAACCGCCTCACGC 62.090 66.667 0.00 0.00 41.76 5.34
6607 8267 3.777925 CGAAGCAACCGCCTCACG 61.778 66.667 0.00 0.00 39.83 4.35
6654 8314 0.481128 ACCAAACCCCTCACCGAAAT 59.519 50.000 0.00 0.00 0.00 2.17
6659 8319 1.074951 CTGGACCAAACCCCTCACC 59.925 63.158 0.00 0.00 0.00 4.02
6660 8320 1.074951 CCTGGACCAAACCCCTCAC 59.925 63.158 0.00 0.00 0.00 3.51
6742 8404 0.530431 CAAAAAGTGCAGCCACCACC 60.530 55.000 0.00 0.00 43.09 4.61
6758 8420 1.967779 TCACCATGAGAGTCGACCAAA 59.032 47.619 13.01 0.00 0.00 3.28
6767 8429 2.915349 CCATCACCTTCACCATGAGAG 58.085 52.381 0.00 0.00 0.00 3.20
6771 8433 1.100510 CAGCCATCACCTTCACCATG 58.899 55.000 0.00 0.00 0.00 3.66
6779 8441 2.353958 CACTGGCAGCCATCACCT 59.646 61.111 16.64 0.00 30.82 4.00
6792 8454 1.813513 AATTTCTGACTCCGCCACTG 58.186 50.000 0.00 0.00 0.00 3.66
6793 8455 3.600388 CTTAATTTCTGACTCCGCCACT 58.400 45.455 0.00 0.00 0.00 4.00
6794 8456 2.678336 CCTTAATTTCTGACTCCGCCAC 59.322 50.000 0.00 0.00 0.00 5.01
6795 8457 2.569853 TCCTTAATTTCTGACTCCGCCA 59.430 45.455 0.00 0.00 0.00 5.69
6796 8458 3.261981 TCCTTAATTTCTGACTCCGCC 57.738 47.619 0.00 0.00 0.00 6.13
6797 8459 4.442706 TGATCCTTAATTTCTGACTCCGC 58.557 43.478 0.00 0.00 0.00 5.54
6798 8460 5.053145 CCTGATCCTTAATTTCTGACTCCG 58.947 45.833 0.00 0.00 0.00 4.63
6799 8461 5.372373 CCCTGATCCTTAATTTCTGACTCC 58.628 45.833 0.00 0.00 0.00 3.85
6800 8462 5.372373 CCCCTGATCCTTAATTTCTGACTC 58.628 45.833 0.00 0.00 0.00 3.36
6801 8463 4.166919 CCCCCTGATCCTTAATTTCTGACT 59.833 45.833 0.00 0.00 0.00 3.41
6802 8464 4.464947 CCCCCTGATCCTTAATTTCTGAC 58.535 47.826 0.00 0.00 0.00 3.51
6803 8465 4.796110 CCCCCTGATCCTTAATTTCTGA 57.204 45.455 0.00 0.00 0.00 3.27
6821 8483 2.536066 ACTTTGAGTTATTTGGCCCCC 58.464 47.619 0.00 0.00 0.00 5.40
6822 8484 4.039852 TGAAACTTTGAGTTATTTGGCCCC 59.960 41.667 0.00 0.00 37.47 5.80
6823 8485 5.208463 TGAAACTTTGAGTTATTTGGCCC 57.792 39.130 0.00 0.00 37.47 5.80
6824 8486 8.708742 GTTATTGAAACTTTGAGTTATTTGGCC 58.291 33.333 0.00 0.00 37.47 5.36
6825 8487 9.255304 TGTTATTGAAACTTTGAGTTATTTGGC 57.745 29.630 0.00 0.00 37.47 4.52
6828 8490 9.981114 CCCTGTTATTGAAACTTTGAGTTATTT 57.019 29.630 0.00 0.00 37.47 1.40
6829 8491 8.585018 CCCCTGTTATTGAAACTTTGAGTTATT 58.415 33.333 0.00 0.00 37.47 1.40
6830 8492 7.309805 GCCCCTGTTATTGAAACTTTGAGTTAT 60.310 37.037 0.00 0.00 37.47 1.89
6831 8493 6.015772 GCCCCTGTTATTGAAACTTTGAGTTA 60.016 38.462 0.00 0.00 37.47 2.24
6832 8494 5.221441 GCCCCTGTTATTGAAACTTTGAGTT 60.221 40.000 0.00 0.00 40.80 3.01
6833 8495 4.280929 GCCCCTGTTATTGAAACTTTGAGT 59.719 41.667 0.00 0.00 0.00 3.41
6834 8496 4.321974 GGCCCCTGTTATTGAAACTTTGAG 60.322 45.833 0.00 0.00 0.00 3.02
6835 8497 3.576550 GGCCCCTGTTATTGAAACTTTGA 59.423 43.478 0.00 0.00 0.00 2.69
6836 8498 3.323403 TGGCCCCTGTTATTGAAACTTTG 59.677 43.478 0.00 0.00 0.00 2.77
6837 8499 3.582164 TGGCCCCTGTTATTGAAACTTT 58.418 40.909 0.00 0.00 0.00 2.66
6838 8500 3.252554 TGGCCCCTGTTATTGAAACTT 57.747 42.857 0.00 0.00 0.00 2.66
6839 8501 2.990740 TGGCCCCTGTTATTGAAACT 57.009 45.000 0.00 0.00 0.00 2.66
6840 8502 3.070302 TGTTTGGCCCCTGTTATTGAAAC 59.930 43.478 0.00 0.22 0.00 2.78
6841 8503 3.309296 TGTTTGGCCCCTGTTATTGAAA 58.691 40.909 0.00 0.00 0.00 2.69
6842 8504 2.964209 TGTTTGGCCCCTGTTATTGAA 58.036 42.857 0.00 0.00 0.00 2.69
6843 8505 2.685106 TGTTTGGCCCCTGTTATTGA 57.315 45.000 0.00 0.00 0.00 2.57
6844 8506 3.979101 ATTGTTTGGCCCCTGTTATTG 57.021 42.857 0.00 0.00 0.00 1.90
6845 8507 4.683643 AGTATTGTTTGGCCCCTGTTATT 58.316 39.130 0.00 0.00 0.00 1.40
6846 8508 4.331159 AGTATTGTTTGGCCCCTGTTAT 57.669 40.909 0.00 0.00 0.00 1.89
6847 8509 3.818295 AGTATTGTTTGGCCCCTGTTA 57.182 42.857 0.00 0.00 0.00 2.41
6848 8510 2.694616 AGTATTGTTTGGCCCCTGTT 57.305 45.000 0.00 0.00 0.00 3.16
6849 8511 3.818295 TTAGTATTGTTTGGCCCCTGT 57.182 42.857 0.00 0.00 0.00 4.00
6850 8512 5.197451 TGTATTAGTATTGTTTGGCCCCTG 58.803 41.667 0.00 0.00 0.00 4.45
6851 8513 5.459982 TGTATTAGTATTGTTTGGCCCCT 57.540 39.130 0.00 0.00 0.00 4.79
6852 8514 9.695155 ATATATGTATTAGTATTGTTTGGCCCC 57.305 33.333 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.