Multiple sequence alignment - TraesCS3A01G278100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G278100 | chr3A | 100.000 | 5547 | 0 | 0 | 1 | 5547 | 507641471 | 507635925 | 0.000000e+00 | 10244.0 |
1 | TraesCS3A01G278100 | chr3B | 92.479 | 3590 | 133 | 56 | 1 | 3485 | 501502532 | 501498975 | 0.000000e+00 | 5007.0 |
2 | TraesCS3A01G278100 | chr3B | 90.400 | 1802 | 89 | 31 | 3485 | 5279 | 501498909 | 501497185 | 0.000000e+00 | 2292.0 |
3 | TraesCS3A01G278100 | chr3D | 96.978 | 1886 | 50 | 5 | 1411 | 3294 | 385474919 | 385473039 | 0.000000e+00 | 3160.0 |
4 | TraesCS3A01G278100 | chr3D | 92.013 | 1853 | 81 | 29 | 3434 | 5279 | 385473001 | 385471209 | 0.000000e+00 | 2540.0 |
5 | TraesCS3A01G278100 | chr3D | 87.033 | 1473 | 55 | 49 | 1 | 1378 | 385476697 | 385475266 | 0.000000e+00 | 1537.0 |
6 | TraesCS3A01G278100 | chr3D | 97.308 | 260 | 7 | 0 | 5288 | 5547 | 500597144 | 500596885 | 5.100000e-120 | 442.0 |
7 | TraesCS3A01G278100 | chr2A | 100.000 | 260 | 0 | 0 | 5288 | 5547 | 351425615 | 351425874 | 1.080000e-131 | 481.0 |
8 | TraesCS3A01G278100 | chr4B | 99.231 | 260 | 2 | 0 | 5288 | 5547 | 286125740 | 286125999 | 2.340000e-128 | 470.0 |
9 | TraesCS3A01G278100 | chr6D | 97.692 | 260 | 6 | 0 | 5288 | 5547 | 318401344 | 318401603 | 1.100000e-121 | 448.0 |
10 | TraesCS3A01G278100 | chr2B | 90.769 | 260 | 24 | 0 | 5288 | 5547 | 161923681 | 161923422 | 1.140000e-91 | 348.0 |
11 | TraesCS3A01G278100 | chr2B | 90.385 | 260 | 25 | 0 | 5288 | 5547 | 46683164 | 46682905 | 5.320000e-90 | 342.0 |
12 | TraesCS3A01G278100 | chrUn | 90.385 | 260 | 25 | 0 | 5288 | 5547 | 247063232 | 247062973 | 5.320000e-90 | 342.0 |
13 | TraesCS3A01G278100 | chr2D | 90.385 | 260 | 25 | 0 | 5288 | 5547 | 412619123 | 412618864 | 5.320000e-90 | 342.0 |
14 | TraesCS3A01G278100 | chr7D | 89.615 | 260 | 27 | 0 | 5288 | 5547 | 603881378 | 603881119 | 1.150000e-86 | 331.0 |
15 | TraesCS3A01G278100 | chr7D | 91.429 | 70 | 3 | 3 | 3351 | 3419 | 192076711 | 192076778 | 5.920000e-15 | 93.5 |
16 | TraesCS3A01G278100 | chr5B | 100.000 | 52 | 0 | 0 | 3368 | 3419 | 128350949 | 128351000 | 4.570000e-16 | 97.1 |
17 | TraesCS3A01G278100 | chr5B | 88.462 | 78 | 6 | 3 | 3364 | 3439 | 369259098 | 369259022 | 2.130000e-14 | 91.6 |
18 | TraesCS3A01G278100 | chr1D | 96.552 | 58 | 1 | 1 | 3363 | 3419 | 256553265 | 256553322 | 1.650000e-15 | 95.3 |
19 | TraesCS3A01G278100 | chr1D | 98.182 | 55 | 0 | 1 | 3366 | 3419 | 260956101 | 260956047 | 1.650000e-15 | 95.3 |
20 | TraesCS3A01G278100 | chr1B | 98.148 | 54 | 1 | 0 | 3366 | 3419 | 560222249 | 560222196 | 1.650000e-15 | 95.3 |
21 | TraesCS3A01G278100 | chr1B | 85.882 | 85 | 7 | 5 | 3358 | 3440 | 35449677 | 35449758 | 9.900000e-13 | 86.1 |
22 | TraesCS3A01G278100 | chr4D | 89.474 | 76 | 5 | 3 | 3367 | 3440 | 73982626 | 73982552 | 5.920000e-15 | 93.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G278100 | chr3A | 507635925 | 507641471 | 5546 | True | 10244.000000 | 10244 | 100.0000 | 1 | 5547 | 1 | chr3A.!!$R1 | 5546 |
1 | TraesCS3A01G278100 | chr3B | 501497185 | 501502532 | 5347 | True | 3649.500000 | 5007 | 91.4395 | 1 | 5279 | 2 | chr3B.!!$R1 | 5278 |
2 | TraesCS3A01G278100 | chr3D | 385471209 | 385476697 | 5488 | True | 2412.333333 | 3160 | 92.0080 | 1 | 5279 | 3 | chr3D.!!$R2 | 5278 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
252 | 293 | 0.798776 | GACAGTCTGCACGGGAAATG | 59.201 | 55.000 | 0.0 | 0.0 | 0.00 | 2.32 | F |
599 | 677 | 1.153862 | CTCAGCTGAGGCGAGACAC | 60.154 | 63.158 | 32.3 | 0.0 | 44.37 | 3.67 | F |
1860 | 2310 | 0.738389 | CGCCACCACCCAATTACATC | 59.262 | 55.000 | 0.0 | 0.0 | 0.00 | 3.06 | F |
2925 | 3378 | 1.221466 | ACTCCAACACGCATGTCACG | 61.221 | 55.000 | 0.0 | 0.0 | 38.45 | 4.35 | F |
3099 | 3556 | 0.593128 | CCGGGAAGTTGACAGCAAAG | 59.407 | 55.000 | 0.0 | 0.0 | 35.42 | 2.77 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1860 | 2310 | 0.767446 | AGGATCCTGCAGATGAGGGG | 60.767 | 60.0 | 15.29 | 0.0 | 34.42 | 4.79 | R |
2538 | 2988 | 0.968901 | TGACCCTCGTACGCCAATCT | 60.969 | 55.0 | 11.24 | 0.0 | 0.00 | 2.40 | R |
2958 | 3411 | 0.244721 | GCAATGGCTGTCTTTGGACC | 59.755 | 55.0 | 9.51 | 0.0 | 41.47 | 4.46 | R |
4357 | 4892 | 0.036010 | CCAGTGCTCTTACCACCTGG | 60.036 | 60.0 | 0.00 | 0.0 | 42.17 | 4.45 | R |
4658 | 5193 | 0.107165 | CCGGGGAGGACAAGGATTTC | 60.107 | 60.0 | 0.00 | 0.0 | 45.00 | 2.17 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
26 | 27 | 6.321945 | TCAGCATCGTACCCAGTAAACTATAA | 59.678 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
27 | 28 | 6.420008 | CAGCATCGTACCCAGTAAACTATAAC | 59.580 | 42.308 | 0.00 | 0.00 | 0.00 | 1.89 |
28 | 29 | 5.400485 | GCATCGTACCCAGTAAACTATAACG | 59.600 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
29 | 30 | 6.728200 | CATCGTACCCAGTAAACTATAACGA | 58.272 | 40.000 | 9.88 | 9.88 | 0.00 | 3.85 |
30 | 31 | 6.363577 | TCGTACCCAGTAAACTATAACGAG | 57.636 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
32 | 33 | 7.045416 | TCGTACCCAGTAAACTATAACGAGTA | 58.955 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
35 | 36 | 6.856895 | ACCCAGTAAACTATAACGAGTACAC | 58.143 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
36 | 37 | 6.127619 | ACCCAGTAAACTATAACGAGTACACC | 60.128 | 42.308 | 0.00 | 0.00 | 0.00 | 4.16 |
37 | 38 | 6.268566 | CCAGTAAACTATAACGAGTACACCC | 58.731 | 44.000 | 0.00 | 0.00 | 0.00 | 4.61 |
38 | 39 | 6.096001 | CCAGTAAACTATAACGAGTACACCCT | 59.904 | 42.308 | 0.00 | 0.00 | 0.00 | 4.34 |
41 | 42 | 4.240881 | ACTATAACGAGTACACCCTCCA | 57.759 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
46 | 51 | 1.888736 | GAGTACACCCTCCACCGTC | 59.111 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
175 | 189 | 3.721706 | CCAGCCGCCCTTCCTTCT | 61.722 | 66.667 | 0.00 | 0.00 | 0.00 | 2.85 |
252 | 293 | 0.798776 | GACAGTCTGCACGGGAAATG | 59.201 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
295 | 336 | 2.442272 | GCCCGACTCAGCTCCCTA | 60.442 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
296 | 337 | 1.834822 | GCCCGACTCAGCTCCCTAT | 60.835 | 63.158 | 0.00 | 0.00 | 0.00 | 2.57 |
297 | 338 | 2.045280 | CCCGACTCAGCTCCCTATG | 58.955 | 63.158 | 0.00 | 0.00 | 0.00 | 2.23 |
335 | 376 | 2.820037 | GCCAGTACCGCTTGCTCC | 60.820 | 66.667 | 0.00 | 0.00 | 33.51 | 4.70 |
378 | 419 | 3.580319 | GACCTGGCACCAACCCCT | 61.580 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
379 | 420 | 3.569200 | GACCTGGCACCAACCCCTC | 62.569 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
427 | 501 | 9.694520 | GAAGAAAATTGTTTTGAGAAAAGAAGC | 57.305 | 29.630 | 0.00 | 0.00 | 37.12 | 3.86 |
430 | 504 | 9.992910 | GAAAATTGTTTTGAGAAAAGAAGCAAT | 57.007 | 25.926 | 0.00 | 0.00 | 37.12 | 3.56 |
596 | 674 | 2.362247 | AGCTCAGCTGAGGCGAGA | 60.362 | 61.111 | 37.86 | 7.34 | 44.37 | 4.04 |
597 | 675 | 2.202730 | GCTCAGCTGAGGCGAGAC | 60.203 | 66.667 | 37.86 | 20.64 | 44.37 | 3.36 |
598 | 676 | 2.999485 | GCTCAGCTGAGGCGAGACA | 61.999 | 63.158 | 37.86 | 5.84 | 44.37 | 3.41 |
599 | 677 | 1.153862 | CTCAGCTGAGGCGAGACAC | 60.154 | 63.158 | 32.30 | 0.00 | 44.37 | 3.67 |
600 | 678 | 1.871126 | CTCAGCTGAGGCGAGACACA | 61.871 | 60.000 | 32.30 | 0.00 | 44.37 | 3.72 |
601 | 679 | 1.735920 | CAGCTGAGGCGAGACACAC | 60.736 | 63.158 | 8.42 | 0.00 | 44.37 | 3.82 |
650 | 736 | 2.102749 | CATTGCATTGGCCGACGG | 59.897 | 61.111 | 10.29 | 10.29 | 40.13 | 4.79 |
797 | 927 | 2.039418 | TCGGGAGAGAGAGAGAGAGAG | 58.961 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
800 | 930 | 3.309296 | GGGAGAGAGAGAGAGAGAGAGA | 58.691 | 54.545 | 0.00 | 0.00 | 0.00 | 3.10 |
801 | 931 | 3.323403 | GGGAGAGAGAGAGAGAGAGAGAG | 59.677 | 56.522 | 0.00 | 0.00 | 0.00 | 3.20 |
802 | 932 | 3.323403 | GGAGAGAGAGAGAGAGAGAGAGG | 59.677 | 56.522 | 0.00 | 0.00 | 0.00 | 3.69 |
803 | 933 | 2.703007 | AGAGAGAGAGAGAGAGAGAGGC | 59.297 | 54.545 | 0.00 | 0.00 | 0.00 | 4.70 |
804 | 934 | 2.703007 | GAGAGAGAGAGAGAGAGAGGCT | 59.297 | 54.545 | 0.00 | 0.00 | 0.00 | 4.58 |
805 | 935 | 2.703007 | AGAGAGAGAGAGAGAGAGGCTC | 59.297 | 54.545 | 6.34 | 6.34 | 44.29 | 4.70 |
878 | 1008 | 2.753043 | AGCTGCTTGATTGGGGCG | 60.753 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
879 | 1009 | 2.751436 | GCTGCTTGATTGGGGCGA | 60.751 | 61.111 | 0.00 | 0.00 | 0.00 | 5.54 |
1257 | 1393 | 2.515523 | CCTCCTCCAGCATTGCCG | 60.516 | 66.667 | 4.70 | 0.00 | 0.00 | 5.69 |
1626 | 2076 | 3.208383 | CCACATTATGCGCCGCCA | 61.208 | 61.111 | 6.63 | 0.00 | 0.00 | 5.69 |
1860 | 2310 | 0.738389 | CGCCACCACCCAATTACATC | 59.262 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1866 | 2316 | 1.568597 | CCACCCAATTACATCCCCTCA | 59.431 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1872 | 2322 | 3.435457 | CCAATTACATCCCCTCATCTGCA | 60.435 | 47.826 | 0.00 | 0.00 | 0.00 | 4.41 |
1898 | 2348 | 4.720046 | TCCTCACTAGCATCAGGTACTAG | 58.280 | 47.826 | 0.00 | 0.00 | 36.02 | 2.57 |
1908 | 2358 | 9.469807 | CTAGCATCAGGTACTAGAAAACATAAG | 57.530 | 37.037 | 0.00 | 0.00 | 36.02 | 1.73 |
1959 | 2409 | 6.500684 | TCTGCAGTTTCTAAATTTAGCCAG | 57.499 | 37.500 | 18.68 | 15.44 | 0.00 | 4.85 |
2236 | 2686 | 2.559440 | CCTGTGGCTATCAAGAAGCTC | 58.441 | 52.381 | 0.00 | 0.00 | 39.97 | 4.09 |
2329 | 2779 | 6.435292 | AGACATTTGGTTTCACTAGTAGGT | 57.565 | 37.500 | 1.45 | 0.00 | 0.00 | 3.08 |
2422 | 2872 | 1.625315 | CATGGTGAGAACTCCCTGTCA | 59.375 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
2484 | 2934 | 2.967887 | TGAGGCAGCTAGATTGCTCATA | 59.032 | 45.455 | 16.23 | 2.61 | 41.98 | 2.15 |
2800 | 3250 | 3.939592 | GGTGTATTAGTTCCAGCTTCCAC | 59.060 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
2925 | 3378 | 1.221466 | ACTCCAACACGCATGTCACG | 61.221 | 55.000 | 0.00 | 0.00 | 38.45 | 4.35 |
2958 | 3411 | 4.085733 | TGGGAACATTTGGGTGAGTAATG | 58.914 | 43.478 | 0.00 | 0.00 | 35.82 | 1.90 |
2968 | 3421 | 3.244770 | TGGGTGAGTAATGGTCCAAAGAC | 60.245 | 47.826 | 0.00 | 0.00 | 42.73 | 3.01 |
3099 | 3556 | 0.593128 | CCGGGAAGTTGACAGCAAAG | 59.407 | 55.000 | 0.00 | 0.00 | 35.42 | 2.77 |
3419 | 3878 | 9.372189 | CCTCATTCATTAATTAAGAGGGGAAAT | 57.628 | 33.333 | 17.07 | 2.75 | 37.97 | 2.17 |
3436 | 3895 | 6.385759 | AGGGGAAATTTTAGTTGAAGTTTGGT | 59.614 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
3677 | 4204 | 3.206412 | TGTATTATGTTGGCCCCTTCCAT | 59.794 | 43.478 | 0.00 | 0.00 | 35.77 | 3.41 |
3729 | 4256 | 6.458206 | CGAGAAAGTGATCTGGAGAGAACTAG | 60.458 | 46.154 | 0.00 | 0.00 | 0.00 | 2.57 |
3871 | 4398 | 4.040339 | TGTGGTGAGTCATGAAAGAAGCTA | 59.960 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
3872 | 4399 | 4.997395 | GTGGTGAGTCATGAAAGAAGCTAA | 59.003 | 41.667 | 0.00 | 0.00 | 0.00 | 3.09 |
3909 | 4441 | 5.906772 | AAACAGGGACCGATTATCCTAAT | 57.093 | 39.130 | 0.00 | 0.00 | 36.40 | 1.73 |
3910 | 4442 | 7.291651 | AGAAAACAGGGACCGATTATCCTAATA | 59.708 | 37.037 | 0.00 | 0.00 | 36.40 | 0.98 |
3911 | 4443 | 7.569599 | AAACAGGGACCGATTATCCTAATAT | 57.430 | 36.000 | 0.00 | 0.00 | 36.40 | 1.28 |
3912 | 4444 | 8.674925 | AAACAGGGACCGATTATCCTAATATA | 57.325 | 34.615 | 0.00 | 0.00 | 36.40 | 0.86 |
3913 | 4445 | 8.855804 | AACAGGGACCGATTATCCTAATATAT | 57.144 | 34.615 | 0.00 | 0.00 | 36.40 | 0.86 |
3918 | 4450 | 8.027771 | GGGACCGATTATCCTAATATATTAGCG | 58.972 | 40.741 | 22.25 | 18.41 | 38.69 | 4.26 |
3985 | 4517 | 5.163581 | ACACCTCATTGCTCTAAATGCATTC | 60.164 | 40.000 | 13.38 | 0.00 | 40.34 | 2.67 |
3994 | 4526 | 4.685575 | GCTCTAAATGCATTCCTCTCTGGT | 60.686 | 45.833 | 13.38 | 0.00 | 37.07 | 4.00 |
4078 | 4611 | 4.139786 | TCAAACTCTGCTCTTGCTGAAAT | 58.860 | 39.130 | 0.00 | 0.00 | 44.45 | 2.17 |
4134 | 4667 | 0.757188 | AGCATCGAGACTTCGGGGAT | 60.757 | 55.000 | 0.00 | 0.00 | 46.67 | 3.85 |
4143 | 4676 | 1.328430 | ACTTCGGGGATCTTCCGGAC | 61.328 | 60.000 | 21.48 | 0.00 | 46.78 | 4.79 |
4161 | 4694 | 2.510613 | GACCCGAGGATGGAAAACAAA | 58.489 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
4164 | 4697 | 3.509967 | ACCCGAGGATGGAAAACAAATTC | 59.490 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
4295 | 4828 | 6.414732 | TCATTCATTTTACCTCGTTCCTGAT | 58.585 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4327 | 4862 | 3.599730 | TGACAGCACAGGACTAAGATG | 57.400 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
4352 | 4887 | 4.348486 | TGCCCATGTATTTTCCTTTGCTA | 58.652 | 39.130 | 0.00 | 0.00 | 0.00 | 3.49 |
4353 | 4888 | 4.961730 | TGCCCATGTATTTTCCTTTGCTAT | 59.038 | 37.500 | 0.00 | 0.00 | 0.00 | 2.97 |
4357 | 4892 | 7.577616 | GCCCATGTATTTTCCTTTGCTATATCC | 60.578 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
4414 | 4949 | 1.892209 | ACCTAAACAACGGCCTTCAG | 58.108 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4447 | 4982 | 3.423154 | GTGTTCTTGGAGCCGCGG | 61.423 | 66.667 | 24.05 | 24.05 | 0.00 | 6.46 |
4519 | 5054 | 4.828925 | GACGAGCTGAGCCAGGCC | 62.829 | 72.222 | 8.22 | 0.00 | 31.21 | 5.19 |
4547 | 5082 | 1.000993 | AGCCGGAGAGACCTGTGAT | 59.999 | 57.895 | 5.05 | 0.00 | 36.31 | 3.06 |
4548 | 5083 | 1.142748 | GCCGGAGAGACCTGTGATG | 59.857 | 63.158 | 5.05 | 0.00 | 36.31 | 3.07 |
4549 | 5084 | 1.608717 | GCCGGAGAGACCTGTGATGT | 61.609 | 60.000 | 5.05 | 0.00 | 36.31 | 3.06 |
4550 | 5085 | 0.174389 | CCGGAGAGACCTGTGATGTG | 59.826 | 60.000 | 0.00 | 0.00 | 36.31 | 3.21 |
4551 | 5086 | 1.177401 | CGGAGAGACCTGTGATGTGA | 58.823 | 55.000 | 0.00 | 0.00 | 36.31 | 3.58 |
4658 | 5193 | 1.785353 | TTTTCCCCCTTCCCTGACGG | 61.785 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4678 | 5213 | 0.549169 | AAATCCTTGTCCTCCCCGGA | 60.549 | 55.000 | 0.73 | 0.00 | 40.30 | 5.14 |
4679 | 5214 | 0.983378 | AATCCTTGTCCTCCCCGGAG | 60.983 | 60.000 | 0.73 | 3.56 | 44.20 | 4.63 |
4680 | 5215 | 2.182858 | ATCCTTGTCCTCCCCGGAGT | 62.183 | 60.000 | 0.73 | 0.00 | 44.20 | 3.85 |
4681 | 5216 | 1.001248 | CCTTGTCCTCCCCGGAGTA | 59.999 | 63.158 | 0.73 | 0.00 | 44.20 | 2.59 |
4682 | 5217 | 0.616679 | CCTTGTCCTCCCCGGAGTAA | 60.617 | 60.000 | 0.73 | 1.98 | 44.20 | 2.24 |
4711 | 5246 | 7.900782 | AATTTTGCAATTCTTTCAGGAGATG | 57.099 | 32.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4737 | 5272 | 9.885934 | GAGTAAATTCCTTCTTTCTTTTCTGTC | 57.114 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
4740 | 5275 | 7.517614 | AATTCCTTCTTTCTTTTCTGTCCTC | 57.482 | 36.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4752 | 5287 | 3.762407 | TCTGTCCTCGGTCAAATGAAA | 57.238 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
4785 | 5320 | 1.684049 | AGAGACTTCGGCTCCAGGG | 60.684 | 63.158 | 0.00 | 0.00 | 32.82 | 4.45 |
4786 | 5321 | 2.685380 | AGACTTCGGCTCCAGGGG | 60.685 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
4790 | 5325 | 2.203938 | TTCGGCTCCAGGGGTTCT | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 3.01 |
4797 | 5332 | 1.691434 | GCTCCAGGGGTTCTCAGATAG | 59.309 | 57.143 | 0.00 | 0.00 | 0.00 | 2.08 |
4807 | 5342 | 6.068971 | AGGGGTTCTCAGATAGAGTAACTGTA | 60.069 | 42.308 | 0.00 | 0.00 | 44.98 | 2.74 |
4814 | 5349 | 9.521841 | TCTCAGATAGAGTAACTGTATTATGGG | 57.478 | 37.037 | 0.00 | 0.00 | 44.98 | 4.00 |
4815 | 5350 | 9.303116 | CTCAGATAGAGTAACTGTATTATGGGT | 57.697 | 37.037 | 0.00 | 0.00 | 39.62 | 4.51 |
4871 | 5406 | 2.987547 | TGCAAGCTTCAGCAGGGC | 60.988 | 61.111 | 7.34 | 1.74 | 45.16 | 5.19 |
4877 | 5412 | 2.914289 | CTTCAGCAGGGCCTAGGG | 59.086 | 66.667 | 5.28 | 0.00 | 0.00 | 3.53 |
4901 | 5436 | 2.496817 | GCAGTAGAGCTCGGTGGG | 59.503 | 66.667 | 8.37 | 0.00 | 0.00 | 4.61 |
4924 | 5459 | 0.104304 | ACTCGGGCCTTGTATTAGCG | 59.896 | 55.000 | 0.84 | 0.00 | 0.00 | 4.26 |
4969 | 5505 | 5.757099 | ACCCTAATGTTTATATCTCCGGG | 57.243 | 43.478 | 0.00 | 0.00 | 0.00 | 5.73 |
5019 | 5555 | 2.190841 | CCGCACCCTCCGTTTTGTT | 61.191 | 57.895 | 0.00 | 0.00 | 0.00 | 2.83 |
5020 | 5556 | 1.730451 | CCGCACCCTCCGTTTTGTTT | 61.730 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
5021 | 5557 | 0.593773 | CGCACCCTCCGTTTTGTTTG | 60.594 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
5022 | 5558 | 0.458260 | GCACCCTCCGTTTTGTTTGT | 59.542 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
5108 | 5644 | 2.352915 | CGCGTCCGATGCTCTCTC | 60.353 | 66.667 | 10.81 | 0.00 | 36.29 | 3.20 |
5109 | 5645 | 2.829206 | CGCGTCCGATGCTCTCTCT | 61.829 | 63.158 | 10.81 | 0.00 | 36.29 | 3.10 |
5192 | 5728 | 5.005394 | CGGTCGATAATTAAATGGGCGATAG | 59.995 | 44.000 | 0.00 | 0.00 | 0.00 | 2.08 |
5279 | 5815 | 6.255020 | CGCACCAAGAACGAAATAATACTACT | 59.745 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
5280 | 5816 | 7.433131 | CGCACCAAGAACGAAATAATACTACTA | 59.567 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
5281 | 5817 | 8.538039 | GCACCAAGAACGAAATAATACTACTAC | 58.462 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
5282 | 5818 | 9.798994 | CACCAAGAACGAAATAATACTACTACT | 57.201 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
5320 | 5856 | 2.787473 | TGTTCCTCAAGTGCCTATGG | 57.213 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
5321 | 5857 | 2.265367 | TGTTCCTCAAGTGCCTATGGA | 58.735 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
5322 | 5858 | 2.846206 | TGTTCCTCAAGTGCCTATGGAT | 59.154 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
5323 | 5859 | 3.266772 | TGTTCCTCAAGTGCCTATGGATT | 59.733 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
5324 | 5860 | 4.473196 | TGTTCCTCAAGTGCCTATGGATTA | 59.527 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
5325 | 5861 | 4.689612 | TCCTCAAGTGCCTATGGATTAC | 57.310 | 45.455 | 0.00 | 0.00 | 0.00 | 1.89 |
5326 | 5862 | 4.037222 | TCCTCAAGTGCCTATGGATTACA | 58.963 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
5327 | 5863 | 4.101585 | TCCTCAAGTGCCTATGGATTACAG | 59.898 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
5328 | 5864 | 4.384056 | CTCAAGTGCCTATGGATTACAGG | 58.616 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
5337 | 5873 | 6.875972 | CCTATGGATTACAGGCCTATTAGT | 57.124 | 41.667 | 3.98 | 0.68 | 0.00 | 2.24 |
5338 | 5874 | 6.879400 | CCTATGGATTACAGGCCTATTAGTC | 58.121 | 44.000 | 3.98 | 6.23 | 0.00 | 2.59 |
5339 | 5875 | 6.670027 | CCTATGGATTACAGGCCTATTAGTCT | 59.330 | 42.308 | 3.98 | 0.00 | 0.00 | 3.24 |
5340 | 5876 | 7.181125 | CCTATGGATTACAGGCCTATTAGTCTT | 59.819 | 40.741 | 3.98 | 1.87 | 0.00 | 3.01 |
5341 | 5877 | 6.824958 | TGGATTACAGGCCTATTAGTCTTT | 57.175 | 37.500 | 3.98 | 0.00 | 0.00 | 2.52 |
5342 | 5878 | 6.591935 | TGGATTACAGGCCTATTAGTCTTTG | 58.408 | 40.000 | 3.98 | 0.00 | 0.00 | 2.77 |
5343 | 5879 | 6.157994 | TGGATTACAGGCCTATTAGTCTTTGT | 59.842 | 38.462 | 3.98 | 0.00 | 0.00 | 2.83 |
5344 | 5880 | 7.346175 | TGGATTACAGGCCTATTAGTCTTTGTA | 59.654 | 37.037 | 3.98 | 0.00 | 0.00 | 2.41 |
5345 | 5881 | 8.208903 | GGATTACAGGCCTATTAGTCTTTGTAA | 58.791 | 37.037 | 3.98 | 7.17 | 35.17 | 2.41 |
5346 | 5882 | 9.780186 | GATTACAGGCCTATTAGTCTTTGTAAT | 57.220 | 33.333 | 3.98 | 12.00 | 40.91 | 1.89 |
5347 | 5883 | 8.958119 | TTACAGGCCTATTAGTCTTTGTAATG | 57.042 | 34.615 | 3.98 | 0.00 | 0.00 | 1.90 |
5348 | 5884 | 6.958767 | ACAGGCCTATTAGTCTTTGTAATGT | 58.041 | 36.000 | 3.98 | 0.00 | 0.00 | 2.71 |
5349 | 5885 | 7.402862 | ACAGGCCTATTAGTCTTTGTAATGTT | 58.597 | 34.615 | 3.98 | 0.00 | 0.00 | 2.71 |
5350 | 5886 | 7.336931 | ACAGGCCTATTAGTCTTTGTAATGTTG | 59.663 | 37.037 | 3.98 | 0.00 | 0.00 | 3.33 |
5351 | 5887 | 7.336931 | CAGGCCTATTAGTCTTTGTAATGTTGT | 59.663 | 37.037 | 3.98 | 0.00 | 0.00 | 3.32 |
5352 | 5888 | 7.888546 | AGGCCTATTAGTCTTTGTAATGTTGTT | 59.111 | 33.333 | 1.29 | 0.00 | 0.00 | 2.83 |
5353 | 5889 | 8.520351 | GGCCTATTAGTCTTTGTAATGTTGTTT | 58.480 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
5379 | 5915 | 8.921353 | ATAAGATCATTGCTAAATCTCTTGCT | 57.079 | 30.769 | 0.00 | 0.00 | 31.72 | 3.91 |
5381 | 5917 | 8.743085 | AAGATCATTGCTAAATCTCTTGCTAA | 57.257 | 30.769 | 0.00 | 0.00 | 29.65 | 3.09 |
5382 | 5918 | 8.152309 | AGATCATTGCTAAATCTCTTGCTAAC | 57.848 | 34.615 | 0.00 | 0.00 | 0.00 | 2.34 |
5383 | 5919 | 7.772292 | AGATCATTGCTAAATCTCTTGCTAACA | 59.228 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
5384 | 5920 | 7.312657 | TCATTGCTAAATCTCTTGCTAACAG | 57.687 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5385 | 5921 | 6.317140 | TCATTGCTAAATCTCTTGCTAACAGG | 59.683 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
5386 | 5922 | 5.420725 | TGCTAAATCTCTTGCTAACAGGA | 57.579 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
5387 | 5923 | 5.994250 | TGCTAAATCTCTTGCTAACAGGAT | 58.006 | 37.500 | 0.00 | 0.00 | 30.57 | 3.24 |
5388 | 5924 | 6.418101 | TGCTAAATCTCTTGCTAACAGGATT | 58.582 | 36.000 | 0.00 | 0.00 | 30.57 | 3.01 |
5389 | 5925 | 7.564793 | TGCTAAATCTCTTGCTAACAGGATTA | 58.435 | 34.615 | 0.00 | 0.00 | 30.57 | 1.75 |
5390 | 5926 | 8.046708 | TGCTAAATCTCTTGCTAACAGGATTAA | 58.953 | 33.333 | 0.00 | 0.00 | 30.57 | 1.40 |
5391 | 5927 | 8.893727 | GCTAAATCTCTTGCTAACAGGATTAAA | 58.106 | 33.333 | 0.00 | 0.00 | 30.57 | 1.52 |
5393 | 5929 | 7.631717 | AATCTCTTGCTAACAGGATTAAACC | 57.368 | 36.000 | 0.00 | 0.00 | 30.57 | 3.27 |
5394 | 5930 | 6.374417 | TCTCTTGCTAACAGGATTAAACCT | 57.626 | 37.500 | 0.00 | 0.00 | 41.43 | 3.50 |
5395 | 5931 | 6.407202 | TCTCTTGCTAACAGGATTAAACCTC | 58.593 | 40.000 | 0.37 | 0.00 | 38.32 | 3.85 |
5396 | 5932 | 6.013725 | TCTCTTGCTAACAGGATTAAACCTCA | 60.014 | 38.462 | 0.37 | 0.00 | 38.32 | 3.86 |
5397 | 5933 | 5.938125 | TCTTGCTAACAGGATTAAACCTCAC | 59.062 | 40.000 | 0.37 | 0.00 | 38.32 | 3.51 |
5398 | 5934 | 4.585879 | TGCTAACAGGATTAAACCTCACC | 58.414 | 43.478 | 0.37 | 0.00 | 38.32 | 4.02 |
5399 | 5935 | 4.288626 | TGCTAACAGGATTAAACCTCACCT | 59.711 | 41.667 | 0.37 | 0.00 | 38.32 | 4.00 |
5400 | 5936 | 5.222048 | TGCTAACAGGATTAAACCTCACCTT | 60.222 | 40.000 | 0.37 | 0.00 | 38.32 | 3.50 |
5401 | 5937 | 5.354513 | GCTAACAGGATTAAACCTCACCTTC | 59.645 | 44.000 | 0.37 | 0.00 | 38.32 | 3.46 |
5402 | 5938 | 4.302559 | ACAGGATTAAACCTCACCTTCC | 57.697 | 45.455 | 0.37 | 0.00 | 38.32 | 3.46 |
5403 | 5939 | 3.916989 | ACAGGATTAAACCTCACCTTCCT | 59.083 | 43.478 | 0.37 | 0.00 | 38.32 | 3.36 |
5404 | 5940 | 4.265073 | CAGGATTAAACCTCACCTTCCTG | 58.735 | 47.826 | 0.37 | 1.60 | 41.84 | 3.86 |
5405 | 5941 | 4.175962 | AGGATTAAACCTCACCTTCCTGA | 58.824 | 43.478 | 0.00 | 0.00 | 34.98 | 3.86 |
5406 | 5942 | 4.790790 | AGGATTAAACCTCACCTTCCTGAT | 59.209 | 41.667 | 0.00 | 0.00 | 34.98 | 2.90 |
5407 | 5943 | 5.254032 | AGGATTAAACCTCACCTTCCTGATT | 59.746 | 40.000 | 0.00 | 0.00 | 34.98 | 2.57 |
5408 | 5944 | 6.447084 | AGGATTAAACCTCACCTTCCTGATTA | 59.553 | 38.462 | 0.00 | 0.00 | 34.98 | 1.75 |
5409 | 5945 | 7.129504 | AGGATTAAACCTCACCTTCCTGATTAT | 59.870 | 37.037 | 0.00 | 0.00 | 34.98 | 1.28 |
5410 | 5946 | 8.437575 | GGATTAAACCTCACCTTCCTGATTATA | 58.562 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
5414 | 5950 | 8.798975 | AAACCTCACCTTCCTGATTATATAGA | 57.201 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
5415 | 5951 | 8.980832 | AACCTCACCTTCCTGATTATATAGAT | 57.019 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
5416 | 5952 | 8.602472 | ACCTCACCTTCCTGATTATATAGATC | 57.398 | 38.462 | 0.00 | 0.00 | 0.00 | 2.75 |
5417 | 5953 | 7.621683 | ACCTCACCTTCCTGATTATATAGATCC | 59.378 | 40.741 | 0.00 | 0.00 | 0.00 | 3.36 |
5418 | 5954 | 7.843760 | CCTCACCTTCCTGATTATATAGATCCT | 59.156 | 40.741 | 0.00 | 0.00 | 0.00 | 3.24 |
5419 | 5955 | 8.601047 | TCACCTTCCTGATTATATAGATCCTG | 57.399 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
5420 | 5956 | 7.124901 | TCACCTTCCTGATTATATAGATCCTGC | 59.875 | 40.741 | 0.00 | 0.00 | 0.00 | 4.85 |
5421 | 5957 | 6.385467 | ACCTTCCTGATTATATAGATCCTGCC | 59.615 | 42.308 | 0.00 | 0.00 | 0.00 | 4.85 |
5422 | 5958 | 6.183361 | CCTTCCTGATTATATAGATCCTGCCC | 60.183 | 46.154 | 0.00 | 0.00 | 0.00 | 5.36 |
5423 | 5959 | 5.853700 | TCCTGATTATATAGATCCTGCCCA | 58.146 | 41.667 | 0.00 | 0.00 | 0.00 | 5.36 |
5424 | 5960 | 6.271537 | TCCTGATTATATAGATCCTGCCCAA | 58.728 | 40.000 | 0.00 | 0.00 | 0.00 | 4.12 |
5425 | 5961 | 6.156949 | TCCTGATTATATAGATCCTGCCCAAC | 59.843 | 42.308 | 0.00 | 0.00 | 0.00 | 3.77 |
5426 | 5962 | 6.070021 | CCTGATTATATAGATCCTGCCCAACA | 60.070 | 42.308 | 0.00 | 0.00 | 0.00 | 3.33 |
5427 | 5963 | 6.950842 | TGATTATATAGATCCTGCCCAACAG | 58.049 | 40.000 | 0.00 | 0.00 | 46.77 | 3.16 |
5440 | 5976 | 1.547372 | CCCAACAGGCTTTCATTGAGG | 59.453 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
5441 | 5977 | 1.547372 | CCAACAGGCTTTCATTGAGGG | 59.453 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
5442 | 5978 | 2.242043 | CAACAGGCTTTCATTGAGGGT | 58.758 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
5443 | 5979 | 3.420893 | CAACAGGCTTTCATTGAGGGTA | 58.579 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
5444 | 5980 | 3.356529 | ACAGGCTTTCATTGAGGGTAG | 57.643 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
5445 | 5981 | 2.912956 | ACAGGCTTTCATTGAGGGTAGA | 59.087 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
5446 | 5982 | 3.330701 | ACAGGCTTTCATTGAGGGTAGAA | 59.669 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
5447 | 5983 | 3.944015 | CAGGCTTTCATTGAGGGTAGAAG | 59.056 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
5448 | 5984 | 3.846588 | AGGCTTTCATTGAGGGTAGAAGA | 59.153 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
5449 | 5985 | 4.289672 | AGGCTTTCATTGAGGGTAGAAGAA | 59.710 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
5450 | 5986 | 5.044550 | AGGCTTTCATTGAGGGTAGAAGAAT | 60.045 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
5451 | 5987 | 5.654209 | GGCTTTCATTGAGGGTAGAAGAATT | 59.346 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
5452 | 5988 | 6.828785 | GGCTTTCATTGAGGGTAGAAGAATTA | 59.171 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
5453 | 5989 | 7.012799 | GGCTTTCATTGAGGGTAGAAGAATTAG | 59.987 | 40.741 | 0.00 | 0.00 | 0.00 | 1.73 |
5454 | 5990 | 7.554476 | GCTTTCATTGAGGGTAGAAGAATTAGT | 59.446 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
5455 | 5991 | 8.792830 | TTTCATTGAGGGTAGAAGAATTAGTG | 57.207 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
5456 | 5992 | 7.733773 | TCATTGAGGGTAGAAGAATTAGTGA | 57.266 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
5457 | 5993 | 8.324191 | TCATTGAGGGTAGAAGAATTAGTGAT | 57.676 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
5458 | 5994 | 9.434275 | TCATTGAGGGTAGAAGAATTAGTGATA | 57.566 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
5487 | 6023 | 8.824159 | TTATAATTGCTCAAGAGATAGCTCAC | 57.176 | 34.615 | 11.20 | 0.00 | 43.81 | 3.51 |
5488 | 6024 | 5.356291 | AATTGCTCAAGAGATAGCTCACT | 57.644 | 39.130 | 11.20 | 0.00 | 43.81 | 3.41 |
5489 | 6025 | 4.383850 | TTGCTCAAGAGATAGCTCACTC | 57.616 | 45.455 | 11.20 | 10.81 | 43.81 | 3.51 |
5490 | 6026 | 3.630168 | TGCTCAAGAGATAGCTCACTCT | 58.370 | 45.455 | 11.20 | 14.32 | 43.81 | 3.24 |
5492 | 6028 | 4.465660 | TGCTCAAGAGATAGCTCACTCTTT | 59.534 | 41.667 | 23.69 | 12.44 | 46.86 | 2.52 |
5493 | 6029 | 5.043248 | GCTCAAGAGATAGCTCACTCTTTC | 58.957 | 45.833 | 23.69 | 15.64 | 46.86 | 2.62 |
5494 | 6030 | 5.163519 | GCTCAAGAGATAGCTCACTCTTTCT | 60.164 | 44.000 | 23.69 | 8.86 | 46.86 | 2.52 |
5495 | 6031 | 6.449635 | TCAAGAGATAGCTCACTCTTTCTC | 57.550 | 41.667 | 23.69 | 11.43 | 46.86 | 2.87 |
5496 | 6032 | 6.186957 | TCAAGAGATAGCTCACTCTTTCTCT | 58.813 | 40.000 | 23.69 | 12.98 | 46.86 | 3.10 |
5497 | 6033 | 6.318648 | TCAAGAGATAGCTCACTCTTTCTCTC | 59.681 | 42.308 | 23.69 | 9.47 | 46.86 | 3.20 |
5498 | 6034 | 6.006275 | AGAGATAGCTCACTCTTTCTCTCT | 57.994 | 41.667 | 11.20 | 0.00 | 43.34 | 3.10 |
5499 | 6035 | 6.058183 | AGAGATAGCTCACTCTTTCTCTCTC | 58.942 | 44.000 | 11.20 | 0.00 | 43.34 | 3.20 |
5500 | 6036 | 5.754782 | AGATAGCTCACTCTTTCTCTCTCA | 58.245 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
5501 | 6037 | 6.186957 | AGATAGCTCACTCTTTCTCTCTCAA | 58.813 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5502 | 6038 | 6.663093 | AGATAGCTCACTCTTTCTCTCTCAAA | 59.337 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
5503 | 6039 | 5.743636 | AGCTCACTCTTTCTCTCTCAAAT | 57.256 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
5504 | 6040 | 5.723295 | AGCTCACTCTTTCTCTCTCAAATC | 58.277 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
5505 | 6041 | 5.481473 | AGCTCACTCTTTCTCTCTCAAATCT | 59.519 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
5506 | 6042 | 6.014327 | AGCTCACTCTTTCTCTCTCAAATCTT | 60.014 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
5507 | 6043 | 6.091169 | GCTCACTCTTTCTCTCTCAAATCTTG | 59.909 | 42.308 | 0.00 | 0.00 | 0.00 | 3.02 |
5508 | 6044 | 6.462500 | TCACTCTTTCTCTCTCAAATCTTGG | 58.538 | 40.000 | 0.00 | 0.00 | 0.00 | 3.61 |
5509 | 6045 | 6.268617 | TCACTCTTTCTCTCTCAAATCTTGGA | 59.731 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
5510 | 6046 | 6.933521 | CACTCTTTCTCTCTCAAATCTTGGAA | 59.066 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
5511 | 6047 | 7.443575 | CACTCTTTCTCTCTCAAATCTTGGAAA | 59.556 | 37.037 | 0.00 | 0.00 | 0.00 | 3.13 |
5512 | 6048 | 7.443879 | ACTCTTTCTCTCTCAAATCTTGGAAAC | 59.556 | 37.037 | 0.00 | 0.00 | 0.00 | 2.78 |
5513 | 6049 | 7.282585 | TCTTTCTCTCTCAAATCTTGGAAACA | 58.717 | 34.615 | 0.00 | 0.00 | 39.83 | 2.83 |
5514 | 6050 | 7.941238 | TCTTTCTCTCTCAAATCTTGGAAACAT | 59.059 | 33.333 | 0.00 | 0.00 | 42.32 | 2.71 |
5515 | 6051 | 7.444629 | TTCTCTCTCAAATCTTGGAAACATG | 57.555 | 36.000 | 0.00 | 0.00 | 42.32 | 3.21 |
5516 | 6052 | 6.772605 | TCTCTCTCAAATCTTGGAAACATGA | 58.227 | 36.000 | 0.00 | 0.00 | 46.98 | 3.07 |
5524 | 6060 | 3.765381 | TCTTGGAAACATGATGCCTTCA | 58.235 | 40.909 | 0.00 | 0.00 | 42.32 | 3.02 |
5525 | 6061 | 4.346730 | TCTTGGAAACATGATGCCTTCAT | 58.653 | 39.130 | 0.00 | 0.00 | 46.27 | 2.57 |
5539 | 6075 | 8.706492 | TGATGCCTTCATGTTAAAAATTGATC | 57.294 | 30.769 | 0.00 | 0.00 | 31.96 | 2.92 |
5540 | 6076 | 8.533657 | TGATGCCTTCATGTTAAAAATTGATCT | 58.466 | 29.630 | 0.00 | 0.00 | 31.96 | 2.75 |
5541 | 6077 | 9.374838 | GATGCCTTCATGTTAAAAATTGATCTT | 57.625 | 29.630 | 0.00 | 0.00 | 31.96 | 2.40 |
5542 | 6078 | 8.537049 | TGCCTTCATGTTAAAAATTGATCTTG | 57.463 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
5543 | 6079 | 7.118101 | TGCCTTCATGTTAAAAATTGATCTTGC | 59.882 | 33.333 | 0.00 | 0.00 | 0.00 | 4.01 |
5544 | 6080 | 7.332678 | GCCTTCATGTTAAAAATTGATCTTGCT | 59.667 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
5545 | 6081 | 9.859427 | CCTTCATGTTAAAAATTGATCTTGCTA | 57.141 | 29.630 | 0.00 | 0.00 | 0.00 | 3.49 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
13 | 14 | 6.096001 | AGGGTGTACTCGTTATAGTTTACTGG | 59.904 | 42.308 | 0.00 | 0.00 | 0.00 | 4.00 |
15 | 16 | 6.319911 | GGAGGGTGTACTCGTTATAGTTTACT | 59.680 | 42.308 | 0.00 | 0.00 | 38.39 | 2.24 |
26 | 27 | 1.975407 | CGGTGGAGGGTGTACTCGT | 60.975 | 63.158 | 0.00 | 0.00 | 38.39 | 4.18 |
27 | 28 | 1.930908 | GACGGTGGAGGGTGTACTCG | 61.931 | 65.000 | 0.00 | 0.00 | 38.39 | 4.18 |
28 | 29 | 1.888736 | GACGGTGGAGGGTGTACTC | 59.111 | 63.158 | 0.00 | 0.00 | 36.76 | 2.59 |
29 | 30 | 1.975407 | CGACGGTGGAGGGTGTACT | 60.975 | 63.158 | 0.00 | 0.00 | 0.00 | 2.73 |
30 | 31 | 2.570181 | CGACGGTGGAGGGTGTAC | 59.430 | 66.667 | 0.00 | 0.00 | 0.00 | 2.90 |
95 | 104 | 4.090057 | GACGAGGCAAGTTGCGGC | 62.090 | 66.667 | 21.11 | 14.06 | 46.21 | 6.53 |
158 | 172 | 3.721706 | AGAAGGAAGGGCGGCTGG | 61.722 | 66.667 | 9.56 | 0.00 | 0.00 | 4.85 |
159 | 173 | 2.437359 | CAGAAGGAAGGGCGGCTG | 60.437 | 66.667 | 9.56 | 0.00 | 0.00 | 4.85 |
160 | 174 | 4.416738 | GCAGAAGGAAGGGCGGCT | 62.417 | 66.667 | 9.56 | 0.00 | 0.00 | 5.52 |
237 | 278 | 2.877691 | GGCATTTCCCGTGCAGAC | 59.122 | 61.111 | 0.00 | 0.00 | 44.25 | 3.51 |
252 | 293 | 0.615827 | AGAAGGCTGGGAAATTGGGC | 60.616 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
335 | 376 | 1.576356 | GGAAATAGCTGGACTGCGAG | 58.424 | 55.000 | 0.00 | 0.00 | 38.13 | 5.03 |
537 | 615 | 1.569708 | GAGCTCATCTCTTTCTGGCG | 58.430 | 55.000 | 9.40 | 0.00 | 38.78 | 5.69 |
596 | 674 | 2.653702 | GCTCGCCTCTCTGTGTGT | 59.346 | 61.111 | 0.00 | 0.00 | 0.00 | 3.72 |
597 | 675 | 2.505777 | CGCTCGCCTCTCTGTGTG | 60.506 | 66.667 | 0.00 | 0.00 | 0.00 | 3.82 |
598 | 676 | 3.753434 | CCGCTCGCCTCTCTGTGT | 61.753 | 66.667 | 0.00 | 0.00 | 0.00 | 3.72 |
599 | 677 | 3.753434 | ACCGCTCGCCTCTCTGTG | 61.753 | 66.667 | 0.00 | 0.00 | 0.00 | 3.66 |
600 | 678 | 3.753434 | CACCGCTCGCCTCTCTGT | 61.753 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
800 | 930 | 0.185901 | CTGGCCTAGAGAGAGAGCCT | 59.814 | 60.000 | 3.32 | 0.00 | 44.19 | 4.58 |
801 | 931 | 0.827507 | CCTGGCCTAGAGAGAGAGCC | 60.828 | 65.000 | 3.32 | 0.00 | 44.13 | 4.70 |
802 | 932 | 0.827507 | CCCTGGCCTAGAGAGAGAGC | 60.828 | 65.000 | 3.32 | 0.00 | 0.00 | 4.09 |
803 | 933 | 0.555769 | ACCCTGGCCTAGAGAGAGAG | 59.444 | 60.000 | 3.32 | 0.00 | 0.00 | 3.20 |
804 | 934 | 0.260230 | CACCCTGGCCTAGAGAGAGA | 59.740 | 60.000 | 3.32 | 0.00 | 0.00 | 3.10 |
805 | 935 | 0.758685 | CCACCCTGGCCTAGAGAGAG | 60.759 | 65.000 | 3.32 | 0.00 | 0.00 | 3.20 |
806 | 936 | 1.311403 | CCACCCTGGCCTAGAGAGA | 59.689 | 63.158 | 3.32 | 0.00 | 0.00 | 3.10 |
807 | 937 | 1.764054 | CCCACCCTGGCCTAGAGAG | 60.764 | 68.421 | 3.32 | 0.00 | 35.79 | 3.20 |
808 | 938 | 2.368594 | CCCACCCTGGCCTAGAGA | 59.631 | 66.667 | 3.32 | 0.00 | 35.79 | 3.10 |
809 | 939 | 2.041265 | ACCCACCCTGGCCTAGAG | 59.959 | 66.667 | 3.32 | 0.00 | 35.79 | 2.43 |
810 | 940 | 2.285368 | CACCCACCCTGGCCTAGA | 60.285 | 66.667 | 3.32 | 0.00 | 35.79 | 2.43 |
811 | 941 | 3.411517 | CCACCCACCCTGGCCTAG | 61.412 | 72.222 | 3.32 | 0.00 | 35.79 | 3.02 |
860 | 990 | 2.768492 | CGCCCCAATCAAGCAGCTC | 61.768 | 63.158 | 0.00 | 0.00 | 0.00 | 4.09 |
878 | 1008 | 4.610714 | GATCTCCCGCCCGGCTTC | 62.611 | 72.222 | 8.05 | 0.00 | 0.00 | 3.86 |
908 | 1038 | 1.692042 | CAGGGGATCTGCAGGTCCT | 60.692 | 63.158 | 38.34 | 22.17 | 36.60 | 3.85 |
1116 | 1252 | 1.894756 | CGAGGCGGAGGAGGAGTAG | 60.895 | 68.421 | 0.00 | 0.00 | 0.00 | 2.57 |
1386 | 1522 | 4.710695 | TGTACGCGTGGCTGGTCG | 62.711 | 66.667 | 24.59 | 0.00 | 0.00 | 4.79 |
1860 | 2310 | 0.767446 | AGGATCCTGCAGATGAGGGG | 60.767 | 60.000 | 15.29 | 0.00 | 34.42 | 4.79 |
1866 | 2316 | 1.969923 | GCTAGTGAGGATCCTGCAGAT | 59.030 | 52.381 | 22.02 | 6.84 | 38.17 | 2.90 |
1898 | 2348 | 1.084289 | ACTCGGGCGCTTATGTTTTC | 58.916 | 50.000 | 7.64 | 0.00 | 0.00 | 2.29 |
1908 | 2358 | 1.361793 | TACATTTAACACTCGGGCGC | 58.638 | 50.000 | 0.00 | 0.00 | 0.00 | 6.53 |
1942 | 2392 | 7.010275 | CGTCTAGGACTGGCTAAATTTAGAAAC | 59.990 | 40.741 | 26.00 | 15.83 | 32.47 | 2.78 |
1959 | 2409 | 4.036971 | ACTGTAATGAGCATCGTCTAGGAC | 59.963 | 45.833 | 0.00 | 0.00 | 38.61 | 3.85 |
2236 | 2686 | 1.117150 | CCTGCCCATTCCCAATCTTG | 58.883 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2329 | 2779 | 1.765904 | TGGCCCTCTGATACGCAATAA | 59.234 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
2422 | 2872 | 9.807649 | GATGCAAATAAAAGAACCACTATGATT | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2538 | 2988 | 0.968901 | TGACCCTCGTACGCCAATCT | 60.969 | 55.000 | 11.24 | 0.00 | 0.00 | 2.40 |
2635 | 3085 | 5.339200 | CCACACTAGTTCAGGGGATTAATGT | 60.339 | 44.000 | 0.00 | 0.00 | 28.64 | 2.71 |
2800 | 3250 | 7.379529 | ACAACTGAAAAATCGCATAGAAACAAG | 59.620 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2925 | 3378 | 1.808411 | ATGTTCCCATGACACGTGTC | 58.192 | 50.000 | 36.01 | 36.01 | 44.97 | 3.67 |
2958 | 3411 | 0.244721 | GCAATGGCTGTCTTTGGACC | 59.755 | 55.000 | 9.51 | 0.00 | 41.47 | 4.46 |
2968 | 3421 | 2.490509 | TGACTGAAGATTGCAATGGCTG | 59.509 | 45.455 | 18.59 | 11.52 | 41.91 | 4.85 |
3099 | 3556 | 9.606631 | ACAACTCCAAAAGAATATAGATCAGAC | 57.393 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
3168 | 3625 | 1.523258 | CTCATCTCCAAGCGGCTGG | 60.523 | 63.158 | 1.81 | 7.71 | 37.87 | 4.85 |
3332 | 3790 | 8.362464 | AGCCAGATAATACGATAGGTCAATTA | 57.638 | 34.615 | 0.00 | 0.00 | 43.77 | 1.40 |
3423 | 3882 | 9.841295 | TCTAAGTAACATAACCAAACTTCAACT | 57.159 | 29.630 | 0.00 | 0.00 | 32.85 | 3.16 |
3498 | 4023 | 7.611467 | ACCTCAACAGCTATATTGATCAACAAA | 59.389 | 33.333 | 11.07 | 0.00 | 42.03 | 2.83 |
3570 | 4097 | 5.043732 | AGGGAAAGAGGTGATCTAGAGAAGA | 60.044 | 44.000 | 0.00 | 0.00 | 37.23 | 2.87 |
3729 | 4256 | 2.952310 | AGTTGGAACTTTTCAGCTCACC | 59.048 | 45.455 | 0.00 | 0.00 | 35.21 | 4.02 |
3760 | 4287 | 4.412207 | GTTGCCCACTTTCTATAAAAGCG | 58.588 | 43.478 | 0.00 | 0.00 | 0.00 | 4.68 |
3838 | 4365 | 2.289257 | TGACTCACCACAGCATGAAGAG | 60.289 | 50.000 | 0.00 | 0.00 | 39.69 | 2.85 |
3871 | 4398 | 6.039829 | GTCCCTGTTTTCTCAAGTTCTCATTT | 59.960 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
3872 | 4399 | 5.532779 | GTCCCTGTTTTCTCAAGTTCTCATT | 59.467 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3910 | 4442 | 9.448438 | TCCATTTATGCTTATGTTCGCTAATAT | 57.552 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
3911 | 4443 | 8.840833 | TCCATTTATGCTTATGTTCGCTAATA | 57.159 | 30.769 | 0.00 | 0.00 | 0.00 | 0.98 |
3912 | 4444 | 7.744087 | TCCATTTATGCTTATGTTCGCTAAT | 57.256 | 32.000 | 0.00 | 0.00 | 0.00 | 1.73 |
3913 | 4445 | 7.282224 | AGTTCCATTTATGCTTATGTTCGCTAA | 59.718 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
3918 | 4450 | 8.623903 | TCATCAGTTCCATTTATGCTTATGTTC | 58.376 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3985 | 4517 | 5.112686 | GCATTTAGACAGTAACCAGAGAGG | 58.887 | 45.833 | 0.00 | 0.00 | 45.67 | 3.69 |
4089 | 4622 | 2.507110 | CTTGCGAGAGAAAGGGCCGA | 62.507 | 60.000 | 0.00 | 0.00 | 43.35 | 5.54 |
4128 | 4661 | 3.547513 | GGGTCCGGAAGATCCCCG | 61.548 | 72.222 | 15.62 | 15.08 | 40.31 | 5.73 |
4134 | 4667 | 1.756950 | CATCCTCGGGTCCGGAAGA | 60.757 | 63.158 | 5.23 | 5.45 | 40.25 | 2.87 |
4140 | 4673 | 0.326927 | TGTTTTCCATCCTCGGGTCC | 59.673 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4143 | 4676 | 3.427503 | CGAATTTGTTTTCCATCCTCGGG | 60.428 | 47.826 | 0.00 | 0.00 | 0.00 | 5.14 |
4301 | 4834 | 6.530120 | TCTTAGTCCTGTGCTGTCATTTAAA | 58.470 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
4302 | 4835 | 6.109156 | TCTTAGTCCTGTGCTGTCATTTAA | 57.891 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
4303 | 4836 | 5.738619 | TCTTAGTCCTGTGCTGTCATTTA | 57.261 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
4327 | 4862 | 5.049828 | GCAAAGGAAAATACATGGGCATAC | 58.950 | 41.667 | 0.00 | 0.00 | 0.00 | 2.39 |
4352 | 4887 | 2.706190 | GTGCTCTTACCACCTGGGATAT | 59.294 | 50.000 | 0.00 | 0.00 | 41.15 | 1.63 |
4353 | 4888 | 2.116238 | GTGCTCTTACCACCTGGGATA | 58.884 | 52.381 | 0.00 | 0.00 | 41.15 | 2.59 |
4357 | 4892 | 0.036010 | CCAGTGCTCTTACCACCTGG | 60.036 | 60.000 | 0.00 | 0.00 | 42.17 | 4.45 |
4447 | 4982 | 1.040339 | ACAGCCTGATCTCCTCGGTC | 61.040 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4547 | 5082 | 1.885388 | CCGACGCCTGTTGTTCACA | 60.885 | 57.895 | 0.00 | 0.00 | 0.00 | 3.58 |
4548 | 5083 | 1.828331 | GACCGACGCCTGTTGTTCAC | 61.828 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4549 | 5084 | 1.593209 | GACCGACGCCTGTTGTTCA | 60.593 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
4550 | 5085 | 2.654912 | CGACCGACGCCTGTTGTTC | 61.655 | 63.158 | 0.00 | 0.00 | 34.51 | 3.18 |
4551 | 5086 | 2.660552 | CGACCGACGCCTGTTGTT | 60.661 | 61.111 | 0.00 | 0.00 | 34.51 | 2.83 |
4649 | 5184 | 1.278127 | GACAAGGATTTCCGTCAGGGA | 59.722 | 52.381 | 1.20 | 0.00 | 45.40 | 4.20 |
4658 | 5193 | 0.107165 | CCGGGGAGGACAAGGATTTC | 60.107 | 60.000 | 0.00 | 0.00 | 45.00 | 2.17 |
4681 | 5216 | 9.612066 | TCCTGAAAGAATTGCAAAATTTACTTT | 57.388 | 25.926 | 1.71 | 9.02 | 34.07 | 2.66 |
4682 | 5217 | 9.264719 | CTCCTGAAAGAATTGCAAAATTTACTT | 57.735 | 29.630 | 1.71 | 0.61 | 34.07 | 2.24 |
4711 | 5246 | 9.885934 | GACAGAAAAGAAAGAAGGAATTTACTC | 57.114 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
4752 | 5287 | 7.649057 | CCGAAGTCTCTGTATTTTTCCTTTTT | 58.351 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
4757 | 5292 | 4.254492 | AGCCGAAGTCTCTGTATTTTTCC | 58.746 | 43.478 | 0.00 | 0.00 | 0.00 | 3.13 |
4775 | 5310 | 3.003173 | TGAGAACCCCTGGAGCCG | 61.003 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
4790 | 5325 | 9.078990 | CACCCATAATACAGTTACTCTATCTGA | 57.921 | 37.037 | 0.00 | 0.00 | 33.93 | 3.27 |
4797 | 5332 | 7.625828 | AAAAGCACCCATAATACAGTTACTC | 57.374 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4879 | 5414 | 0.547075 | ACCGAGCTCTACTGCCTAGA | 59.453 | 55.000 | 12.85 | 0.00 | 0.00 | 2.43 |
4880 | 5415 | 0.665835 | CACCGAGCTCTACTGCCTAG | 59.334 | 60.000 | 12.85 | 0.00 | 0.00 | 3.02 |
4881 | 5416 | 0.752009 | CCACCGAGCTCTACTGCCTA | 60.752 | 60.000 | 12.85 | 0.00 | 0.00 | 3.93 |
4882 | 5417 | 2.055042 | CCACCGAGCTCTACTGCCT | 61.055 | 63.158 | 12.85 | 0.00 | 0.00 | 4.75 |
4883 | 5418 | 2.496817 | CCACCGAGCTCTACTGCC | 59.503 | 66.667 | 12.85 | 0.00 | 0.00 | 4.85 |
4884 | 5419 | 1.889530 | AACCCACCGAGCTCTACTGC | 61.890 | 60.000 | 12.85 | 0.00 | 0.00 | 4.40 |
4885 | 5420 | 0.108615 | CAACCCACCGAGCTCTACTG | 60.109 | 60.000 | 12.85 | 3.77 | 0.00 | 2.74 |
4901 | 5436 | 2.109425 | AATACAAGGCCCGAGTCAAC | 57.891 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4969 | 5505 | 2.806608 | TAAGATCCACGGGATTACGC | 57.193 | 50.000 | 6.85 | 0.00 | 43.27 | 4.42 |
5019 | 5555 | 1.830408 | CCCACCGGCCTTTTGACAA | 60.830 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
5020 | 5556 | 2.203422 | CCCACCGGCCTTTTGACA | 60.203 | 61.111 | 0.00 | 0.00 | 0.00 | 3.58 |
5021 | 5557 | 1.971695 | CTCCCACCGGCCTTTTGAC | 60.972 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
5022 | 5558 | 2.434331 | CTCCCACCGGCCTTTTGA | 59.566 | 61.111 | 0.00 | 0.00 | 0.00 | 2.69 |
5043 | 5579 | 2.976494 | AAGTGGCAACGGGACAAGGG | 62.976 | 60.000 | 0.00 | 0.00 | 35.15 | 3.95 |
5108 | 5644 | 2.816204 | ATCTCAGCGATCCATCACAG | 57.184 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
5109 | 5645 | 3.200483 | CAAATCTCAGCGATCCATCACA | 58.800 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
5300 | 5836 | 2.642311 | TCCATAGGCACTTGAGGAACAA | 59.358 | 45.455 | 0.00 | 0.00 | 41.75 | 2.83 |
5301 | 5837 | 2.265367 | TCCATAGGCACTTGAGGAACA | 58.735 | 47.619 | 0.00 | 0.00 | 41.75 | 3.18 |
5302 | 5838 | 3.567478 | ATCCATAGGCACTTGAGGAAC | 57.433 | 47.619 | 0.00 | 0.00 | 41.75 | 3.62 |
5303 | 5839 | 4.473196 | TGTAATCCATAGGCACTTGAGGAA | 59.527 | 41.667 | 0.00 | 0.00 | 41.75 | 3.36 |
5304 | 5840 | 4.037222 | TGTAATCCATAGGCACTTGAGGA | 58.963 | 43.478 | 0.00 | 0.00 | 41.75 | 3.71 |
5305 | 5841 | 4.384056 | CTGTAATCCATAGGCACTTGAGG | 58.616 | 47.826 | 0.00 | 0.00 | 41.75 | 3.86 |
5306 | 5842 | 4.384056 | CCTGTAATCCATAGGCACTTGAG | 58.616 | 47.826 | 0.00 | 0.00 | 41.75 | 3.02 |
5307 | 5843 | 4.422073 | CCTGTAATCCATAGGCACTTGA | 57.578 | 45.455 | 0.00 | 0.00 | 41.75 | 3.02 |
5314 | 5850 | 6.670027 | AGACTAATAGGCCTGTAATCCATAGG | 59.330 | 42.308 | 17.99 | 0.00 | 38.55 | 2.57 |
5315 | 5851 | 7.726033 | AGACTAATAGGCCTGTAATCCATAG | 57.274 | 40.000 | 17.99 | 8.80 | 0.00 | 2.23 |
5316 | 5852 | 8.375506 | CAAAGACTAATAGGCCTGTAATCCATA | 58.624 | 37.037 | 17.99 | 0.00 | 0.00 | 2.74 |
5317 | 5853 | 7.147302 | ACAAAGACTAATAGGCCTGTAATCCAT | 60.147 | 37.037 | 17.99 | 0.00 | 0.00 | 3.41 |
5318 | 5854 | 6.157994 | ACAAAGACTAATAGGCCTGTAATCCA | 59.842 | 38.462 | 17.99 | 0.00 | 0.00 | 3.41 |
5319 | 5855 | 6.592870 | ACAAAGACTAATAGGCCTGTAATCC | 58.407 | 40.000 | 17.99 | 0.26 | 0.00 | 3.01 |
5320 | 5856 | 9.780186 | ATTACAAAGACTAATAGGCCTGTAATC | 57.220 | 33.333 | 17.99 | 7.09 | 37.84 | 1.75 |
5321 | 5857 | 9.561069 | CATTACAAAGACTAATAGGCCTGTAAT | 57.439 | 33.333 | 17.99 | 18.33 | 40.54 | 1.89 |
5322 | 5858 | 8.545472 | ACATTACAAAGACTAATAGGCCTGTAA | 58.455 | 33.333 | 17.99 | 16.20 | 36.83 | 2.41 |
5323 | 5859 | 8.086143 | ACATTACAAAGACTAATAGGCCTGTA | 57.914 | 34.615 | 17.99 | 6.67 | 0.00 | 2.74 |
5324 | 5860 | 6.958767 | ACATTACAAAGACTAATAGGCCTGT | 58.041 | 36.000 | 17.99 | 5.57 | 0.00 | 4.00 |
5325 | 5861 | 7.336931 | ACAACATTACAAAGACTAATAGGCCTG | 59.663 | 37.037 | 17.99 | 0.00 | 0.00 | 4.85 |
5326 | 5862 | 7.402862 | ACAACATTACAAAGACTAATAGGCCT | 58.597 | 34.615 | 11.78 | 11.78 | 0.00 | 5.19 |
5327 | 5863 | 7.625828 | ACAACATTACAAAGACTAATAGGCC | 57.374 | 36.000 | 0.00 | 0.00 | 0.00 | 5.19 |
5354 | 5890 | 8.921353 | AGCAAGAGATTTAGCAATGATCTTAT | 57.079 | 30.769 | 0.00 | 0.00 | 29.60 | 1.73 |
5355 | 5891 | 9.836864 | TTAGCAAGAGATTTAGCAATGATCTTA | 57.163 | 29.630 | 0.00 | 0.00 | 29.60 | 2.10 |
5356 | 5892 | 8.619546 | GTTAGCAAGAGATTTAGCAATGATCTT | 58.380 | 33.333 | 0.00 | 0.00 | 30.25 | 2.40 |
5357 | 5893 | 7.772292 | TGTTAGCAAGAGATTTAGCAATGATCT | 59.228 | 33.333 | 0.00 | 0.00 | 33.05 | 2.75 |
5358 | 5894 | 7.923888 | TGTTAGCAAGAGATTTAGCAATGATC | 58.076 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
5359 | 5895 | 7.013083 | CCTGTTAGCAAGAGATTTAGCAATGAT | 59.987 | 37.037 | 0.00 | 0.00 | 0.00 | 2.45 |
5360 | 5896 | 6.317140 | CCTGTTAGCAAGAGATTTAGCAATGA | 59.683 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
5361 | 5897 | 6.317140 | TCCTGTTAGCAAGAGATTTAGCAATG | 59.683 | 38.462 | 0.00 | 0.00 | 0.00 | 2.82 |
5362 | 5898 | 6.418101 | TCCTGTTAGCAAGAGATTTAGCAAT | 58.582 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
5363 | 5899 | 5.804639 | TCCTGTTAGCAAGAGATTTAGCAA | 58.195 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
5364 | 5900 | 5.420725 | TCCTGTTAGCAAGAGATTTAGCA | 57.579 | 39.130 | 0.00 | 0.00 | 0.00 | 3.49 |
5365 | 5901 | 6.934048 | AATCCTGTTAGCAAGAGATTTAGC | 57.066 | 37.500 | 0.00 | 0.00 | 0.00 | 3.09 |
5367 | 5903 | 9.174166 | GGTTTAATCCTGTTAGCAAGAGATTTA | 57.826 | 33.333 | 5.04 | 0.00 | 0.00 | 1.40 |
5368 | 5904 | 7.890655 | AGGTTTAATCCTGTTAGCAAGAGATTT | 59.109 | 33.333 | 4.20 | 0.00 | 36.35 | 2.17 |
5369 | 5905 | 7.406104 | AGGTTTAATCCTGTTAGCAAGAGATT | 58.594 | 34.615 | 4.20 | 5.08 | 36.35 | 2.40 |
5370 | 5906 | 6.963322 | AGGTTTAATCCTGTTAGCAAGAGAT | 58.037 | 36.000 | 4.20 | 0.00 | 36.35 | 2.75 |
5371 | 5907 | 6.013725 | TGAGGTTTAATCCTGTTAGCAAGAGA | 60.014 | 38.462 | 9.89 | 0.00 | 38.02 | 3.10 |
5372 | 5908 | 6.092807 | GTGAGGTTTAATCCTGTTAGCAAGAG | 59.907 | 42.308 | 9.89 | 0.00 | 38.02 | 2.85 |
5373 | 5909 | 5.938125 | GTGAGGTTTAATCCTGTTAGCAAGA | 59.062 | 40.000 | 9.89 | 0.00 | 38.02 | 3.02 |
5374 | 5910 | 5.123979 | GGTGAGGTTTAATCCTGTTAGCAAG | 59.876 | 44.000 | 9.89 | 0.00 | 38.02 | 4.01 |
5375 | 5911 | 5.007682 | GGTGAGGTTTAATCCTGTTAGCAA | 58.992 | 41.667 | 9.89 | 0.00 | 38.02 | 3.91 |
5376 | 5912 | 4.288626 | AGGTGAGGTTTAATCCTGTTAGCA | 59.711 | 41.667 | 9.89 | 0.00 | 38.02 | 3.49 |
5377 | 5913 | 4.844884 | AGGTGAGGTTTAATCCTGTTAGC | 58.155 | 43.478 | 9.89 | 6.11 | 38.02 | 3.09 |
5378 | 5914 | 5.880887 | GGAAGGTGAGGTTTAATCCTGTTAG | 59.119 | 44.000 | 9.89 | 0.00 | 38.02 | 2.34 |
5379 | 5915 | 5.550403 | AGGAAGGTGAGGTTTAATCCTGTTA | 59.450 | 40.000 | 9.89 | 0.00 | 38.02 | 2.41 |
5380 | 5916 | 4.354087 | AGGAAGGTGAGGTTTAATCCTGTT | 59.646 | 41.667 | 9.89 | 0.00 | 38.02 | 3.16 |
5381 | 5917 | 3.916989 | AGGAAGGTGAGGTTTAATCCTGT | 59.083 | 43.478 | 9.89 | 0.00 | 38.02 | 4.00 |
5382 | 5918 | 4.265073 | CAGGAAGGTGAGGTTTAATCCTG | 58.735 | 47.826 | 9.89 | 5.77 | 44.43 | 3.86 |
5383 | 5919 | 4.175962 | TCAGGAAGGTGAGGTTTAATCCT | 58.824 | 43.478 | 4.69 | 4.69 | 40.97 | 3.24 |
5384 | 5920 | 4.569719 | TCAGGAAGGTGAGGTTTAATCC | 57.430 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
5388 | 5924 | 9.892444 | TCTATATAATCAGGAAGGTGAGGTTTA | 57.108 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
5389 | 5925 | 8.798975 | TCTATATAATCAGGAAGGTGAGGTTT | 57.201 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
5390 | 5926 | 8.980832 | ATCTATATAATCAGGAAGGTGAGGTT | 57.019 | 34.615 | 0.00 | 0.00 | 0.00 | 3.50 |
5391 | 5927 | 7.621683 | GGATCTATATAATCAGGAAGGTGAGGT | 59.378 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
5392 | 5928 | 7.843760 | AGGATCTATATAATCAGGAAGGTGAGG | 59.156 | 40.741 | 0.00 | 0.00 | 0.00 | 3.86 |
5393 | 5929 | 8.694540 | CAGGATCTATATAATCAGGAAGGTGAG | 58.305 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
5394 | 5930 | 7.124901 | GCAGGATCTATATAATCAGGAAGGTGA | 59.875 | 40.741 | 0.00 | 0.00 | 0.00 | 4.02 |
5395 | 5931 | 7.271511 | GCAGGATCTATATAATCAGGAAGGTG | 58.728 | 42.308 | 0.00 | 0.00 | 0.00 | 4.00 |
5396 | 5932 | 6.385467 | GGCAGGATCTATATAATCAGGAAGGT | 59.615 | 42.308 | 0.00 | 0.00 | 0.00 | 3.50 |
5397 | 5933 | 6.183361 | GGGCAGGATCTATATAATCAGGAAGG | 60.183 | 46.154 | 0.00 | 0.00 | 0.00 | 3.46 |
5398 | 5934 | 6.385176 | TGGGCAGGATCTATATAATCAGGAAG | 59.615 | 42.308 | 0.00 | 0.00 | 0.00 | 3.46 |
5399 | 5935 | 6.271537 | TGGGCAGGATCTATATAATCAGGAA | 58.728 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
5400 | 5936 | 5.853700 | TGGGCAGGATCTATATAATCAGGA | 58.146 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
5401 | 5937 | 6.070021 | TGTTGGGCAGGATCTATATAATCAGG | 60.070 | 42.308 | 0.00 | 1.89 | 0.00 | 3.86 |
5402 | 5938 | 6.950842 | TGTTGGGCAGGATCTATATAATCAG | 58.049 | 40.000 | 0.00 | 2.37 | 0.00 | 2.90 |
5403 | 5939 | 6.950842 | CTGTTGGGCAGGATCTATATAATCA | 58.049 | 40.000 | 0.00 | 0.00 | 41.42 | 2.57 |
5420 | 5956 | 1.547372 | CCTCAATGAAAGCCTGTTGGG | 59.453 | 52.381 | 0.00 | 0.00 | 38.36 | 4.12 |
5421 | 5957 | 1.547372 | CCCTCAATGAAAGCCTGTTGG | 59.453 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
5422 | 5958 | 2.242043 | ACCCTCAATGAAAGCCTGTTG | 58.758 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
5423 | 5959 | 2.683211 | ACCCTCAATGAAAGCCTGTT | 57.317 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5424 | 5960 | 2.912956 | TCTACCCTCAATGAAAGCCTGT | 59.087 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
5425 | 5961 | 3.634397 | TCTACCCTCAATGAAAGCCTG | 57.366 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
5426 | 5962 | 3.846588 | TCTTCTACCCTCAATGAAAGCCT | 59.153 | 43.478 | 0.00 | 0.00 | 0.00 | 4.58 |
5427 | 5963 | 4.222124 | TCTTCTACCCTCAATGAAAGCC | 57.778 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
5428 | 5964 | 6.765915 | AATTCTTCTACCCTCAATGAAAGC | 57.234 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
5429 | 5965 | 8.887717 | CACTAATTCTTCTACCCTCAATGAAAG | 58.112 | 37.037 | 0.00 | 0.00 | 0.00 | 2.62 |
5430 | 5966 | 8.602424 | TCACTAATTCTTCTACCCTCAATGAAA | 58.398 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
5431 | 5967 | 8.146053 | TCACTAATTCTTCTACCCTCAATGAA | 57.854 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
5432 | 5968 | 7.733773 | TCACTAATTCTTCTACCCTCAATGA | 57.266 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5461 | 5997 | 9.434420 | GTGAGCTATCTCTTGAGCAATTATAAT | 57.566 | 33.333 | 0.00 | 0.00 | 41.36 | 1.28 |
5462 | 5998 | 8.646004 | AGTGAGCTATCTCTTGAGCAATTATAA | 58.354 | 33.333 | 0.00 | 0.00 | 41.36 | 0.98 |
5463 | 5999 | 8.187913 | AGTGAGCTATCTCTTGAGCAATTATA | 57.812 | 34.615 | 0.00 | 0.00 | 41.36 | 0.98 |
5464 | 6000 | 7.015487 | AGAGTGAGCTATCTCTTGAGCAATTAT | 59.985 | 37.037 | 12.58 | 0.00 | 41.36 | 1.28 |
5465 | 6001 | 6.323482 | AGAGTGAGCTATCTCTTGAGCAATTA | 59.677 | 38.462 | 12.58 | 0.00 | 41.36 | 1.40 |
5466 | 6002 | 5.129155 | AGAGTGAGCTATCTCTTGAGCAATT | 59.871 | 40.000 | 12.58 | 0.00 | 41.36 | 2.32 |
5467 | 6003 | 4.650588 | AGAGTGAGCTATCTCTTGAGCAAT | 59.349 | 41.667 | 12.58 | 0.00 | 41.36 | 3.56 |
5468 | 6004 | 4.022603 | AGAGTGAGCTATCTCTTGAGCAA | 58.977 | 43.478 | 12.58 | 0.00 | 41.36 | 3.91 |
5469 | 6005 | 3.630168 | AGAGTGAGCTATCTCTTGAGCA | 58.370 | 45.455 | 12.58 | 0.00 | 41.36 | 4.26 |
5470 | 6006 | 4.654091 | AAGAGTGAGCTATCTCTTGAGC | 57.346 | 45.455 | 23.40 | 0.00 | 45.50 | 4.26 |
5471 | 6007 | 6.319658 | AGAGAAAGAGTGAGCTATCTCTTGAG | 59.680 | 42.308 | 24.22 | 0.00 | 46.20 | 3.02 |
5472 | 6008 | 6.186957 | AGAGAAAGAGTGAGCTATCTCTTGA | 58.813 | 40.000 | 24.22 | 0.00 | 46.20 | 3.02 |
5473 | 6009 | 6.319658 | AGAGAGAAAGAGTGAGCTATCTCTTG | 59.680 | 42.308 | 24.22 | 0.00 | 46.20 | 3.02 |
5475 | 6011 | 6.006275 | AGAGAGAAAGAGTGAGCTATCTCT | 57.994 | 41.667 | 12.58 | 12.58 | 41.98 | 3.10 |
5476 | 6012 | 5.822519 | TGAGAGAGAAAGAGTGAGCTATCTC | 59.177 | 44.000 | 0.00 | 0.00 | 42.82 | 2.75 |
5477 | 6013 | 5.754782 | TGAGAGAGAAAGAGTGAGCTATCT | 58.245 | 41.667 | 0.00 | 0.00 | 32.19 | 1.98 |
5478 | 6014 | 6.449635 | TTGAGAGAGAAAGAGTGAGCTATC | 57.550 | 41.667 | 0.00 | 0.00 | 0.00 | 2.08 |
5479 | 6015 | 6.849085 | TTTGAGAGAGAAAGAGTGAGCTAT | 57.151 | 37.500 | 0.00 | 0.00 | 0.00 | 2.97 |
5480 | 6016 | 6.663093 | AGATTTGAGAGAGAAAGAGTGAGCTA | 59.337 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
5481 | 6017 | 5.481473 | AGATTTGAGAGAGAAAGAGTGAGCT | 59.519 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
5482 | 6018 | 5.723295 | AGATTTGAGAGAGAAAGAGTGAGC | 58.277 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
5483 | 6019 | 6.591062 | CCAAGATTTGAGAGAGAAAGAGTGAG | 59.409 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
5484 | 6020 | 6.268617 | TCCAAGATTTGAGAGAGAAAGAGTGA | 59.731 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
5485 | 6021 | 6.462500 | TCCAAGATTTGAGAGAGAAAGAGTG | 58.538 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5486 | 6022 | 6.678568 | TCCAAGATTTGAGAGAGAAAGAGT | 57.321 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
5487 | 6023 | 7.443575 | TGTTTCCAAGATTTGAGAGAGAAAGAG | 59.556 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
5488 | 6024 | 7.282585 | TGTTTCCAAGATTTGAGAGAGAAAGA | 58.717 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
5489 | 6025 | 7.502120 | TGTTTCCAAGATTTGAGAGAGAAAG | 57.498 | 36.000 | 0.00 | 0.00 | 0.00 | 2.62 |
5490 | 6026 | 7.720957 | TCATGTTTCCAAGATTTGAGAGAGAAA | 59.279 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
5491 | 6027 | 7.226441 | TCATGTTTCCAAGATTTGAGAGAGAA | 58.774 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
5492 | 6028 | 6.772605 | TCATGTTTCCAAGATTTGAGAGAGA | 58.227 | 36.000 | 0.00 | 0.00 | 0.00 | 3.10 |
5493 | 6029 | 7.473366 | CATCATGTTTCCAAGATTTGAGAGAG | 58.527 | 38.462 | 0.00 | 0.00 | 26.81 | 3.20 |
5494 | 6030 | 6.127814 | GCATCATGTTTCCAAGATTTGAGAGA | 60.128 | 38.462 | 0.00 | 0.00 | 26.81 | 3.10 |
5495 | 6031 | 6.034591 | GCATCATGTTTCCAAGATTTGAGAG | 58.965 | 40.000 | 0.00 | 0.00 | 26.81 | 3.20 |
5496 | 6032 | 5.105635 | GGCATCATGTTTCCAAGATTTGAGA | 60.106 | 40.000 | 0.00 | 0.00 | 26.81 | 3.27 |
5497 | 6033 | 5.105473 | AGGCATCATGTTTCCAAGATTTGAG | 60.105 | 40.000 | 0.00 | 0.00 | 26.81 | 3.02 |
5498 | 6034 | 4.773674 | AGGCATCATGTTTCCAAGATTTGA | 59.226 | 37.500 | 0.00 | 0.00 | 26.81 | 2.69 |
5499 | 6035 | 5.080969 | AGGCATCATGTTTCCAAGATTTG | 57.919 | 39.130 | 0.00 | 0.00 | 26.81 | 2.32 |
5500 | 6036 | 5.246656 | TGAAGGCATCATGTTTCCAAGATTT | 59.753 | 36.000 | 0.00 | 0.00 | 31.50 | 2.17 |
5501 | 6037 | 4.773674 | TGAAGGCATCATGTTTCCAAGATT | 59.226 | 37.500 | 0.00 | 0.00 | 31.50 | 2.40 |
5502 | 6038 | 4.346730 | TGAAGGCATCATGTTTCCAAGAT | 58.653 | 39.130 | 0.00 | 0.00 | 31.50 | 2.40 |
5503 | 6039 | 3.765381 | TGAAGGCATCATGTTTCCAAGA | 58.235 | 40.909 | 0.00 | 0.00 | 31.50 | 3.02 |
5514 | 6050 | 8.533657 | AGATCAATTTTTAACATGAAGGCATCA | 58.466 | 29.630 | 0.00 | 0.00 | 43.67 | 3.07 |
5515 | 6051 | 8.937634 | AGATCAATTTTTAACATGAAGGCATC | 57.062 | 30.769 | 0.00 | 0.00 | 30.68 | 3.91 |
5516 | 6052 | 9.158233 | CAAGATCAATTTTTAACATGAAGGCAT | 57.842 | 29.630 | 0.00 | 0.00 | 34.29 | 4.40 |
5517 | 6053 | 7.118101 | GCAAGATCAATTTTTAACATGAAGGCA | 59.882 | 33.333 | 0.00 | 0.00 | 0.00 | 4.75 |
5518 | 6054 | 7.332678 | AGCAAGATCAATTTTTAACATGAAGGC | 59.667 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
5519 | 6055 | 8.767478 | AGCAAGATCAATTTTTAACATGAAGG | 57.233 | 30.769 | 0.00 | 0.00 | 0.00 | 3.46 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.