Multiple sequence alignment - TraesCS3A01G277800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G277800 chr3A 100.000 5348 0 0 1 5348 507470215 507464868 0.000000e+00 9877.0
1 TraesCS3A01G277800 chr3A 97.826 184 4 0 4921 5104 379828216 379828399 8.640000e-83 318.0
2 TraesCS3A01G277800 chr3A 93.970 199 12 0 4911 5109 520694097 520693899 8.700000e-78 302.0
3 TraesCS3A01G277800 chr3D 94.962 1866 65 10 2686 4527 385425208 385423348 0.000000e+00 2898.0
4 TraesCS3A01G277800 chr3D 90.952 2111 103 41 643 2699 385428018 385425942 0.000000e+00 2760.0
5 TraesCS3A01G277800 chr3D 85.992 514 48 13 1 514 385428648 385428159 3.670000e-146 529.0
6 TraesCS3A01G277800 chr3D 89.706 408 21 4 4518 4920 385421382 385420991 8.000000e-138 501.0
7 TraesCS3A01G277800 chr3D 90.244 246 14 6 5104 5348 385421000 385420764 4.020000e-81 313.0
8 TraesCS3A01G277800 chr3B 91.947 1962 97 30 539 2460 501391698 501389758 0.000000e+00 2691.0
9 TraesCS3A01G277800 chr3B 91.449 1263 64 15 2861 4093 501389346 501388098 0.000000e+00 1694.0
10 TraesCS3A01G277800 chr3B 93.040 546 29 1 1 537 501392286 501391741 0.000000e+00 789.0
11 TraesCS3A01G277800 chr3B 92.204 372 22 6 4101 4468 501388033 501387665 2.210000e-143 520.0
12 TraesCS3A01G277800 chr3B 88.636 308 28 4 2468 2772 501389682 501389379 8.460000e-98 368.0
13 TraesCS3A01G277800 chr7A 96.040 202 7 1 4913 5113 162899900 162900101 1.440000e-85 327.0
14 TraesCS3A01G277800 chr7A 96.739 184 6 0 4921 5104 99147684 99147867 1.870000e-79 307.0
15 TraesCS3A01G277800 chr7A 95.556 45 2 0 558 602 688368171 688368127 7.430000e-09 73.1
16 TraesCS3A01G277800 chr7A 87.302 63 6 2 546 606 661638912 661638850 2.670000e-08 71.3
17 TraesCS3A01G277800 chr5A 94.898 196 8 2 4914 5109 31286180 31286373 6.730000e-79 305.0
18 TraesCS3A01G277800 chr5A 96.703 182 6 0 4921 5102 631653958 631653777 2.420000e-78 303.0
19 TraesCS3A01G277800 chr5A 95.676 185 8 0 4921 5105 25074990 25075174 1.130000e-76 298.0
20 TraesCS3A01G277800 chr5A 95.699 186 7 1 4921 5106 684631870 684631686 1.130000e-76 298.0
21 TraesCS3A01G277800 chr5A 85.484 62 3 6 558 616 650273964 650273906 5.780000e-05 60.2
22 TraesCS3A01G277800 chr2A 96.703 182 6 0 4921 5102 755275354 755275535 2.420000e-78 303.0
23 TraesCS3A01G277800 chr4B 92.308 52 4 0 4845 4896 19985909 19985858 2.070000e-09 75.0
24 TraesCS3A01G277800 chr1B 91.071 56 3 2 546 600 512989102 512989048 2.070000e-09 75.0
25 TraesCS3A01G277800 chrUn 97.619 42 1 0 558 599 357034052 357034011 7.430000e-09 73.1
26 TraesCS3A01G277800 chrUn 93.478 46 3 0 558 603 83668064 83668109 9.610000e-08 69.4
27 TraesCS3A01G277800 chr1D 97.619 42 1 0 558 599 411590277 411590236 7.430000e-09 73.1
28 TraesCS3A01G277800 chr2B 93.478 46 3 0 556 601 796974866 796974911 9.610000e-08 69.4
29 TraesCS3A01G277800 chr4D 94.286 35 2 0 4844 4878 10644041 10644075 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G277800 chr3A 507464868 507470215 5347 True 9877.0 9877 100.0000 1 5348 1 chr3A.!!$R1 5347
1 TraesCS3A01G277800 chr3D 385420764 385428648 7884 True 1400.2 2898 90.3712 1 5348 5 chr3D.!!$R1 5347
2 TraesCS3A01G277800 chr3B 501387665 501392286 4621 True 1212.4 2691 91.4552 1 4468 5 chr3B.!!$R1 4467

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.927537 TGCACGAAAACTGTGACTCG 59.072 50.0 0.00 5.28 39.73 4.18 F
1866 1997 0.110486 TGGAGCCTGGTGGAAAAGAC 59.890 55.0 0.00 0.00 34.57 3.01 F
2148 2281 0.738412 GCATCATTTGGCAGTGGCAC 60.738 55.0 20.46 10.29 43.71 5.01 F
2360 2499 0.739462 GATGTCGAATCCGTGTGCCA 60.739 55.0 0.00 0.00 37.05 4.92 F
3753 4738 0.747283 GCAGAAGCAGGACTCCATGG 60.747 60.0 4.97 4.97 41.58 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2023 2155 0.106268 TGCACAGGGAAAGGCAAGAA 60.106 50.000 0.00 0.0 32.54 2.52 R
3509 4494 0.323360 CCGGAATTCCAGCCAAAGGA 60.323 55.000 24.09 0.0 35.14 3.36 R
4031 5021 1.958579 GGTTTGTGGGTAACTGGAACC 59.041 52.381 0.00 0.0 36.19 3.62 R
4167 5217 2.553602 TGCTGCACATCACCAAAAGTAG 59.446 45.455 0.00 0.0 0.00 2.57 R
5002 8033 0.248054 CAAACCACGTCAGCACACAC 60.248 55.000 0.00 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.927537 TGCACGAAAACTGTGACTCG 59.072 50.000 0.00 5.28 39.73 4.18
114 115 3.053842 AGGATGTTGATCAAGCTGGACAT 60.054 43.478 8.80 8.29 0.00 3.06
115 116 3.066342 GGATGTTGATCAAGCTGGACATG 59.934 47.826 8.80 0.00 0.00 3.21
200 201 2.852495 TTCGATGTTGCGCCCTCTCC 62.852 60.000 4.18 0.00 0.00 3.71
201 202 2.586792 GATGTTGCGCCCTCTCCT 59.413 61.111 4.18 0.00 0.00 3.69
202 203 1.522580 GATGTTGCGCCCTCTCCTC 60.523 63.158 4.18 0.00 0.00 3.71
277 281 1.139947 GAAGACGCGGAGGAGGAAG 59.860 63.158 12.47 0.00 0.00 3.46
280 284 3.398353 GACGCGGAGGAGGAAGACG 62.398 68.421 12.47 0.00 0.00 4.18
297 301 2.813179 CGACAGCGGCTGTAATGGC 61.813 63.158 33.45 20.02 45.44 4.40
321 325 2.356125 CCCTTCCTCACACCCATAGTTG 60.356 54.545 0.00 0.00 0.00 3.16
332 336 4.532126 ACACCCATAGTTGATCTGTCTCAA 59.468 41.667 0.00 0.00 32.84 3.02
375 379 1.601430 GATGCCGATTCCAGCTTCTTC 59.399 52.381 0.00 0.00 32.15 2.87
420 424 1.075542 TGTAGTTGATGCCGCTTTCG 58.924 50.000 0.00 0.00 0.00 3.46
463 467 6.733280 GCGTTTCATTTTTGCTGACATTATTG 59.267 34.615 0.00 0.00 0.00 1.90
466 470 5.177326 TCATTTTTGCTGACATTATTGGGC 58.823 37.500 0.00 0.00 0.00 5.36
479 483 1.559368 ATTGGGCTTGTTATGCAGCA 58.441 45.000 0.00 0.00 0.00 4.41
485 489 3.431207 GGGCTTGTTATGCAGCATGATTT 60.431 43.478 18.81 0.00 39.69 2.17
566 623 9.952030 TCTACTACTCCTCTGTATAATGATCTG 57.048 37.037 0.00 0.00 0.00 2.90
573 630 5.053140 TCTGTATAATGATCTGAGCGCTC 57.947 43.478 30.42 30.42 0.00 5.03
582 639 7.593875 AATGATCTGAGCGCTCTTATATTTC 57.406 36.000 35.27 21.40 0.00 2.17
623 680 9.646522 ACTTATATAGGCAAAATTGGAGATTGT 57.353 29.630 0.00 0.00 0.00 2.71
678 738 1.228533 TTACACCTTTTTCCGCGTCC 58.771 50.000 4.92 0.00 0.00 4.79
695 755 2.034685 CGTCCGAATATCAGCTTCAGGA 59.965 50.000 0.00 0.00 0.00 3.86
699 759 4.405680 TCCGAATATCAGCTTCAGGAGAAA 59.594 41.667 0.00 0.00 32.35 2.52
704 764 7.439356 CGAATATCAGCTTCAGGAGAAAATGTA 59.561 37.037 0.00 0.00 32.35 2.29
706 766 4.579869 TCAGCTTCAGGAGAAAATGTACC 58.420 43.478 0.00 0.00 32.35 3.34
781 849 1.662044 CCAGCAGTTGGGCTTTCAC 59.338 57.895 0.00 0.00 42.71 3.18
842 910 1.153489 CAGAGTCCAGTGCGATGGG 60.153 63.158 7.13 0.00 41.01 4.00
853 921 2.393768 GCGATGGGCACACAGACAG 61.394 63.158 0.00 0.00 42.87 3.51
854 922 1.004560 CGATGGGCACACAGACAGT 60.005 57.895 0.00 0.00 0.00 3.55
1019 1088 2.168496 CATGGATGGGATCATGAAGGC 58.832 52.381 0.00 0.00 42.25 4.35
1070 1145 3.058432 GGCCCTACTTTTGTTTTCTCGTC 60.058 47.826 0.00 0.00 0.00 4.20
1090 1165 3.624861 GTCTTGATTTGATGATCGTGCCT 59.375 43.478 0.00 0.00 0.00 4.75
1100 1175 3.612247 ATCGTGCCTGGCGCTCTTT 62.612 57.895 27.76 8.68 36.86 2.52
1101 1176 3.357079 CGTGCCTGGCGCTCTTTT 61.357 61.111 27.76 0.00 36.86 2.27
1102 1177 2.563427 GTGCCTGGCGCTCTTTTC 59.437 61.111 24.33 0.00 38.78 2.29
1206 1281 1.066908 CCAGAGATCGAGCAGAAGGTC 59.933 57.143 2.38 0.00 38.87 3.85
1234 1317 1.466950 TCGTGTTTCATTCATTCGCCC 59.533 47.619 0.00 0.00 0.00 6.13
1243 1326 3.311322 TCATTCATTCGCCCGTGTAATTC 59.689 43.478 0.00 0.00 0.00 2.17
1244 1327 1.658994 TCATTCGCCCGTGTAATTCC 58.341 50.000 0.00 0.00 0.00 3.01
1248 1331 3.569690 GCCCGTGTAATTCCGCCG 61.570 66.667 0.00 0.00 0.00 6.46
1249 1332 2.125431 CCCGTGTAATTCCGCCGT 60.125 61.111 0.00 0.00 0.00 5.68
1250 1333 1.141449 CCCGTGTAATTCCGCCGTA 59.859 57.895 0.00 0.00 0.00 4.02
1252 1335 1.485032 CCGTGTAATTCCGCCGTAGC 61.485 60.000 0.00 0.00 0.00 3.58
1282 1365 2.401583 TGTCCATGGTGTATCTGTGC 57.598 50.000 12.58 0.00 0.00 4.57
1293 1376 4.700213 GGTGTATCTGTGCTGTTTTACCAT 59.300 41.667 0.00 0.00 0.00 3.55
1296 1379 6.149474 GTGTATCTGTGCTGTTTTACCATCTT 59.851 38.462 0.00 0.00 0.00 2.40
1450 1540 9.612066 ATTCTCCTCACTTGATCTCTTTAAATC 57.388 33.333 0.00 0.00 0.00 2.17
1453 1543 7.261325 TCCTCACTTGATCTCTTTAAATCGAG 58.739 38.462 0.00 3.26 38.74 4.04
1455 1545 6.341316 TCACTTGATCTCTTTAAATCGAGGG 58.659 40.000 8.13 4.80 37.92 4.30
1464 1554 7.848128 TCTCTTTAAATCGAGGGTATTGAGTT 58.152 34.615 5.02 0.00 34.11 3.01
1745 1865 0.305922 GCTCACAGATTGCGGTATGC 59.694 55.000 0.00 0.00 46.70 3.14
1866 1997 0.110486 TGGAGCCTGGTGGAAAAGAC 59.890 55.000 0.00 0.00 34.57 3.01
1893 2024 1.444895 CAATGTGCGCAAGAAGGCC 60.445 57.895 14.00 0.00 43.02 5.19
2040 2172 1.251251 CCTTCTTGCCTTTCCCTGTG 58.749 55.000 0.00 0.00 0.00 3.66
2077 2210 6.462073 GCAATTTGCATGGATCATATGTTC 57.538 37.500 16.35 3.85 44.26 3.18
2148 2281 0.738412 GCATCATTTGGCAGTGGCAC 60.738 55.000 20.46 10.29 43.71 5.01
2188 2321 2.743928 GGGAGCACAGCTGGTTCG 60.744 66.667 19.93 4.48 39.88 3.95
2288 2427 5.885912 AGCACTAGACAAAGGTCAAAAGAAA 59.114 36.000 0.00 0.00 46.80 2.52
2341 2480 1.135286 GCAAAAGGAGGCTCCAAATCG 60.135 52.381 33.86 18.77 39.61 3.34
2342 2481 2.436417 CAAAAGGAGGCTCCAAATCGA 58.564 47.619 33.86 0.00 39.61 3.59
2360 2499 0.739462 GATGTCGAATCCGTGTGCCA 60.739 55.000 0.00 0.00 37.05 4.92
2367 2506 4.927782 TCCGTGTGCCACACCTGC 62.928 66.667 21.57 0.00 45.93 4.85
2563 2770 2.749621 GGTATGTGCCTATTATGCTGGC 59.250 50.000 0.00 0.00 46.26 4.85
2587 2794 4.119862 TCACTTATCATTCTGCTTACCGC 58.880 43.478 0.00 0.00 39.77 5.68
2670 2877 4.202245 AGTGCCGTCAGCTATTTCTTAA 57.798 40.909 0.00 0.00 44.23 1.85
2671 2878 3.933332 AGTGCCGTCAGCTATTTCTTAAC 59.067 43.478 0.00 0.00 44.23 2.01
2673 2880 4.392138 GTGCCGTCAGCTATTTCTTAACTT 59.608 41.667 0.00 0.00 44.23 2.66
2696 2907 7.224753 ACTTTATCAAACATACTCACCATAGCG 59.775 37.037 0.00 0.00 0.00 4.26
2761 3718 9.840427 ATTTTCTTTTATTTGACATACTCACCG 57.160 29.630 0.00 0.00 0.00 4.94
2882 3839 3.121030 GGTAGTGCTGCTGTGCCG 61.121 66.667 0.00 0.00 0.00 5.69
2921 3878 2.555757 GTTTGCAGATTTCCAGTCAGCT 59.444 45.455 0.00 0.00 0.00 4.24
2995 3958 7.998964 TCTTGACCTTCTTCAAAAGTTATCCTT 59.001 33.333 0.00 0.00 35.07 3.36
3222 4186 3.608316 TGGCCATTTTGCATACTTTCC 57.392 42.857 0.00 0.00 0.00 3.13
3509 4494 3.111853 TCAAGTGACACAGCTTTCGAT 57.888 42.857 8.59 0.00 0.00 3.59
3534 4519 1.657751 GGCTGGAATTCCGGTGAAGC 61.658 60.000 29.82 24.86 44.34 3.86
3581 4566 4.941873 GGTGTATGGTCTTCAAGTAAAGGG 59.058 45.833 0.00 0.00 0.00 3.95
3622 4607 2.311854 ATGGTTCTCCTGGGGCCAG 61.312 63.158 4.39 0.33 43.26 4.85
3665 4650 0.875059 CGGAGGAGTTGAACTTTGGC 59.125 55.000 0.00 0.00 0.00 4.52
3672 4657 1.202405 AGTTGAACTTTGGCGCCTTTG 60.202 47.619 29.70 18.79 0.00 2.77
3753 4738 0.747283 GCAGAAGCAGGACTCCATGG 60.747 60.000 4.97 4.97 41.58 3.66
3812 4797 1.202568 GGCAAATCTAGCATTTGGGCC 60.203 52.381 19.96 15.20 38.91 5.80
3867 4854 1.497161 AGCTGCCCGTAAGTATCCTT 58.503 50.000 0.00 0.00 34.56 3.36
3868 4855 2.674420 AGCTGCCCGTAAGTATCCTTA 58.326 47.619 0.00 0.00 31.89 2.69
3934 4922 4.522975 GTGGCTGCCCATACCCCC 62.523 72.222 17.53 0.00 44.51 5.40
3937 4925 3.804329 GCTGCCCATACCCCCGAA 61.804 66.667 0.00 0.00 0.00 4.30
3943 4933 1.981256 CCCATACCCCCGAATTTCTG 58.019 55.000 0.00 0.00 0.00 3.02
3945 4935 1.409521 CCATACCCCCGAATTTCTGCA 60.410 52.381 0.00 0.00 0.00 4.41
3966 4956 4.807304 GCATCCCTGTTGCAAAATCATTAG 59.193 41.667 0.00 0.00 39.90 1.73
4031 5021 3.804325 AGAACATGAGTTGTCGACTTGTG 59.196 43.478 17.92 9.30 39.19 3.33
4121 5169 2.928757 CTGGCATCTTGCGCTAGATATC 59.071 50.000 29.32 23.39 46.21 1.63
4167 5217 3.641437 AAGTAGCTCATGATCGCTCTC 57.359 47.619 12.35 7.96 37.68 3.20
4168 5218 2.862541 AGTAGCTCATGATCGCTCTCT 58.137 47.619 12.35 9.78 37.68 3.10
4213 5263 1.634973 TGGTTGATCCTTCAGATGCCA 59.365 47.619 0.00 0.00 34.42 4.92
4222 5272 1.207089 CTTCAGATGCCAGGGTCGTTA 59.793 52.381 0.00 0.00 0.00 3.18
4261 5311 1.352352 CTGAGGAGAAAGCCCCAGAAA 59.648 52.381 0.00 0.00 0.00 2.52
4345 5395 1.000274 GTGGTGAAAGCCGCATTTTCT 60.000 47.619 6.64 0.00 38.79 2.52
4504 5555 4.398044 TGAGTAGATGTATCGCAGAACACA 59.602 41.667 0.00 0.00 43.58 3.72
4557 7583 8.700722 ATGATTTTGTATGCATTAAAAAGCGA 57.299 26.923 20.47 14.11 32.16 4.93
4559 7585 9.149225 TGATTTTGTATGCATTAAAAAGCGAAT 57.851 25.926 20.47 8.65 32.16 3.34
4560 7586 9.412390 GATTTTGTATGCATTAAAAAGCGAATG 57.588 29.630 19.11 0.00 36.35 2.67
4561 7587 8.526218 TTTTGTATGCATTAAAAAGCGAATGA 57.474 26.923 3.54 0.00 35.46 2.57
4594 7622 6.091441 GCAGTGACTGGATAAACTAAAGTGAG 59.909 42.308 15.24 0.00 31.21 3.51
4603 7631 7.037586 TGGATAAACTAAAGTGAGGGTCAGAAT 60.038 37.037 0.00 0.00 0.00 2.40
4604 7632 7.496263 GGATAAACTAAAGTGAGGGTCAGAATC 59.504 40.741 0.00 0.00 0.00 2.52
4605 7633 4.457834 ACTAAAGTGAGGGTCAGAATCG 57.542 45.455 0.00 0.00 0.00 3.34
4606 7634 2.100605 AAAGTGAGGGTCAGAATCGC 57.899 50.000 0.00 0.00 0.00 4.58
4607 7635 0.108615 AAGTGAGGGTCAGAATCGCG 60.109 55.000 0.00 0.00 0.00 5.87
4608 7636 2.167861 GTGAGGGTCAGAATCGCGC 61.168 63.158 0.00 0.00 0.00 6.86
4609 7637 2.956964 GAGGGTCAGAATCGCGCG 60.957 66.667 26.76 26.76 0.00 6.86
4610 7638 3.411418 GAGGGTCAGAATCGCGCGA 62.411 63.158 36.65 36.65 0.00 5.87
4611 7639 2.956964 GGGTCAGAATCGCGCGAG 60.957 66.667 36.99 23.53 0.00 5.03
4612 7640 2.956964 GGTCAGAATCGCGCGAGG 60.957 66.667 36.99 24.71 0.00 4.63
4613 7641 3.621394 GTCAGAATCGCGCGAGGC 61.621 66.667 36.99 28.98 38.69 4.70
4614 7642 3.826754 TCAGAATCGCGCGAGGCT 61.827 61.111 36.99 30.63 40.44 4.58
4615 7643 3.326210 CAGAATCGCGCGAGGCTC 61.326 66.667 36.99 29.50 40.44 4.70
4616 7644 4.914420 AGAATCGCGCGAGGCTCG 62.914 66.667 36.99 31.40 43.89 5.03
4711 7739 3.426568 GGTGCGCCTTCTGTCTGC 61.427 66.667 9.68 0.00 0.00 4.26
4718 7746 0.037447 GCCTTCTGTCTGCTCCCTTT 59.963 55.000 0.00 0.00 0.00 3.11
4728 7756 2.391389 GCTCCCTTTTCGTGAGCCG 61.391 63.158 0.00 0.00 44.45 5.52
4730 7758 2.358737 CCCTTTTCGTGAGCCGCT 60.359 61.111 0.00 0.00 36.19 5.52
4761 7789 1.882912 ACAAGTCTCATTGCGCTCAA 58.117 45.000 9.73 0.00 36.51 3.02
4798 7826 2.813061 CTTTGTTGCAACCCTGAACAG 58.187 47.619 26.14 6.39 31.50 3.16
4859 7890 1.953686 TGTACCTTTGCAACAAGCCTC 59.046 47.619 0.00 0.00 44.83 4.70
4888 7919 2.475187 GCTCAGTGCTTCGCAACATTAG 60.475 50.000 0.00 0.00 41.47 1.73
4905 7936 0.771127 TAGCCTTGTTGGAGTGCCTT 59.229 50.000 0.00 0.00 38.35 4.35
4910 7941 2.023673 CTTGTTGGAGTGCCTTGAACA 58.976 47.619 0.00 0.00 34.31 3.18
4911 7942 2.136298 TGTTGGAGTGCCTTGAACAA 57.864 45.000 0.00 0.00 34.31 2.83
4912 7943 2.665165 TGTTGGAGTGCCTTGAACAAT 58.335 42.857 0.00 0.00 34.31 2.71
4913 7944 3.030291 TGTTGGAGTGCCTTGAACAATT 58.970 40.909 0.00 0.00 34.31 2.32
4914 7945 3.450457 TGTTGGAGTGCCTTGAACAATTT 59.550 39.130 0.00 0.00 34.31 1.82
4915 7946 4.081198 TGTTGGAGTGCCTTGAACAATTTT 60.081 37.500 0.00 0.00 34.31 1.82
4916 7947 4.751767 TGGAGTGCCTTGAACAATTTTT 57.248 36.364 0.00 0.00 34.31 1.94
4934 7965 3.636282 TTTTTCCGGCTTTGCTAGAAC 57.364 42.857 0.00 0.00 0.00 3.01
4935 7966 2.561478 TTTCCGGCTTTGCTAGAACT 57.439 45.000 0.00 0.00 0.00 3.01
4936 7967 2.094762 TTCCGGCTTTGCTAGAACTC 57.905 50.000 0.00 0.00 0.00 3.01
4937 7968 0.973632 TCCGGCTTTGCTAGAACTCA 59.026 50.000 0.00 0.00 0.00 3.41
4938 7969 1.555075 TCCGGCTTTGCTAGAACTCAT 59.445 47.619 0.00 0.00 0.00 2.90
4939 7970 1.936547 CCGGCTTTGCTAGAACTCATC 59.063 52.381 0.00 0.00 0.00 2.92
4940 7971 2.419297 CCGGCTTTGCTAGAACTCATCT 60.419 50.000 0.00 0.00 42.48 2.90
4941 7972 3.181475 CCGGCTTTGCTAGAACTCATCTA 60.181 47.826 0.00 0.00 39.71 1.98
4960 7991 9.243637 CTCATCTAGCTGAGTTTTAGTTATGTC 57.756 37.037 14.26 0.00 38.27 3.06
4961 7992 8.972127 TCATCTAGCTGAGTTTTAGTTATGTCT 58.028 33.333 0.00 0.00 0.00 3.41
4962 7993 9.243637 CATCTAGCTGAGTTTTAGTTATGTCTC 57.756 37.037 0.00 0.00 0.00 3.36
4963 7994 8.349568 TCTAGCTGAGTTTTAGTTATGTCTCA 57.650 34.615 0.00 0.00 0.00 3.27
4964 7995 8.972127 TCTAGCTGAGTTTTAGTTATGTCTCAT 58.028 33.333 0.00 0.00 32.73 2.90
4965 7996 9.593134 CTAGCTGAGTTTTAGTTATGTCTCATT 57.407 33.333 0.00 0.00 32.73 2.57
4966 7997 8.485976 AGCTGAGTTTTAGTTATGTCTCATTC 57.514 34.615 0.00 0.00 32.73 2.67
4967 7998 8.097038 AGCTGAGTTTTAGTTATGTCTCATTCA 58.903 33.333 0.00 0.00 32.73 2.57
4968 7999 8.171840 GCTGAGTTTTAGTTATGTCTCATTCAC 58.828 37.037 0.00 0.00 32.73 3.18
4969 8000 9.429359 CTGAGTTTTAGTTATGTCTCATTCACT 57.571 33.333 0.00 0.00 32.73 3.41
4970 8001 9.778741 TGAGTTTTAGTTATGTCTCATTCACTT 57.221 29.630 0.00 0.00 0.00 3.16
4978 8009 9.331282 AGTTATGTCTCATTCACTTTTATAGCC 57.669 33.333 0.00 0.00 0.00 3.93
4979 8010 9.109393 GTTATGTCTCATTCACTTTTATAGCCA 57.891 33.333 0.00 0.00 0.00 4.75
4980 8011 9.851686 TTATGTCTCATTCACTTTTATAGCCAT 57.148 29.630 0.00 0.00 0.00 4.40
4981 8012 8.757982 ATGTCTCATTCACTTTTATAGCCATT 57.242 30.769 0.00 0.00 0.00 3.16
4982 8013 7.988737 TGTCTCATTCACTTTTATAGCCATTG 58.011 34.615 0.00 0.00 0.00 2.82
4983 8014 7.067372 TGTCTCATTCACTTTTATAGCCATTGG 59.933 37.037 0.00 0.00 0.00 3.16
4984 8015 7.283127 GTCTCATTCACTTTTATAGCCATTGGA 59.717 37.037 6.95 0.00 0.00 3.53
4985 8016 8.000709 TCTCATTCACTTTTATAGCCATTGGAT 58.999 33.333 6.95 1.78 0.00 3.41
4986 8017 8.537728 TCATTCACTTTTATAGCCATTGGATT 57.462 30.769 6.95 0.00 0.00 3.01
4987 8018 8.415553 TCATTCACTTTTATAGCCATTGGATTG 58.584 33.333 6.95 0.00 0.00 2.67
4988 8019 7.953005 TTCACTTTTATAGCCATTGGATTGA 57.047 32.000 6.95 0.00 0.00 2.57
4989 8020 8.537728 TTCACTTTTATAGCCATTGGATTGAT 57.462 30.769 6.95 0.00 0.00 2.57
4990 8021 9.639563 TTCACTTTTATAGCCATTGGATTGATA 57.360 29.630 6.95 0.00 0.00 2.15
4991 8022 9.066892 TCACTTTTATAGCCATTGGATTGATAC 57.933 33.333 6.95 0.00 0.00 2.24
4992 8023 9.071276 CACTTTTATAGCCATTGGATTGATACT 57.929 33.333 6.95 0.00 0.00 2.12
5001 8032 7.555554 AGCCATTGGATTGATACTATAAGATGC 59.444 37.037 6.95 0.00 0.00 3.91
5002 8033 7.466455 GCCATTGGATTGATACTATAAGATGCG 60.466 40.741 6.95 0.00 0.00 4.73
5003 8034 7.550551 CCATTGGATTGATACTATAAGATGCGT 59.449 37.037 0.00 0.00 0.00 5.24
5004 8035 7.889589 TTGGATTGATACTATAAGATGCGTG 57.110 36.000 0.00 0.00 0.00 5.34
5005 8036 6.993079 TGGATTGATACTATAAGATGCGTGT 58.007 36.000 0.00 0.00 0.00 4.49
5006 8037 6.868339 TGGATTGATACTATAAGATGCGTGTG 59.132 38.462 0.00 0.00 0.00 3.82
5007 8038 6.868864 GGATTGATACTATAAGATGCGTGTGT 59.131 38.462 0.00 0.00 0.00 3.72
5008 8039 7.148738 GGATTGATACTATAAGATGCGTGTGTG 60.149 40.741 0.00 0.00 0.00 3.82
5009 8040 4.982295 TGATACTATAAGATGCGTGTGTGC 59.018 41.667 0.00 0.00 0.00 4.57
5010 8041 3.526931 ACTATAAGATGCGTGTGTGCT 57.473 42.857 0.00 0.00 35.36 4.40
5011 8042 3.190079 ACTATAAGATGCGTGTGTGCTG 58.810 45.455 0.00 0.00 35.36 4.41
5012 8043 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
5013 8044 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
5014 8045 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
5015 8046 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
5016 8047 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
5017 8048 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
5018 8049 2.584970 CGTGTGTGCTGACGTGGT 60.585 61.111 0.00 0.00 0.00 4.16
5019 8050 2.171079 CGTGTGTGCTGACGTGGTT 61.171 57.895 0.00 0.00 0.00 3.67
5020 8051 1.701545 CGTGTGTGCTGACGTGGTTT 61.702 55.000 0.00 0.00 0.00 3.27
5021 8052 0.248054 GTGTGTGCTGACGTGGTTTG 60.248 55.000 0.00 0.00 0.00 2.93
5022 8053 0.675208 TGTGTGCTGACGTGGTTTGT 60.675 50.000 0.00 0.00 0.00 2.83
5023 8054 1.292061 GTGTGCTGACGTGGTTTGTA 58.708 50.000 0.00 0.00 0.00 2.41
5024 8055 1.260561 GTGTGCTGACGTGGTTTGTAG 59.739 52.381 0.00 0.00 0.00 2.74
5025 8056 1.134640 TGTGCTGACGTGGTTTGTAGT 60.135 47.619 0.00 0.00 0.00 2.73
5026 8057 2.101082 TGTGCTGACGTGGTTTGTAGTA 59.899 45.455 0.00 0.00 0.00 1.82
5027 8058 2.473984 GTGCTGACGTGGTTTGTAGTAC 59.526 50.000 0.00 0.00 0.00 2.73
5028 8059 2.064014 GCTGACGTGGTTTGTAGTACC 58.936 52.381 0.00 0.00 36.17 3.34
5029 8060 2.546373 GCTGACGTGGTTTGTAGTACCA 60.546 50.000 0.00 0.00 43.20 3.25
5030 8061 3.863400 GCTGACGTGGTTTGTAGTACCAT 60.863 47.826 0.00 0.00 46.63 3.55
5031 8062 4.312443 CTGACGTGGTTTGTAGTACCATT 58.688 43.478 0.00 0.00 46.63 3.16
5032 8063 4.706035 TGACGTGGTTTGTAGTACCATTT 58.294 39.130 0.00 0.00 46.63 2.32
5033 8064 4.751098 TGACGTGGTTTGTAGTACCATTTC 59.249 41.667 0.00 0.00 46.63 2.17
5034 8065 4.964593 ACGTGGTTTGTAGTACCATTTCT 58.035 39.130 0.00 0.00 46.63 2.52
5035 8066 6.100404 ACGTGGTTTGTAGTACCATTTCTA 57.900 37.500 0.00 0.00 46.63 2.10
5036 8067 6.704310 ACGTGGTTTGTAGTACCATTTCTAT 58.296 36.000 0.00 0.00 46.63 1.98
5037 8068 6.815142 ACGTGGTTTGTAGTACCATTTCTATC 59.185 38.462 0.00 0.00 46.63 2.08
5038 8069 7.039882 CGTGGTTTGTAGTACCATTTCTATCT 58.960 38.462 0.00 0.00 46.63 1.98
5039 8070 7.010183 CGTGGTTTGTAGTACCATTTCTATCTG 59.990 40.741 0.00 0.00 46.63 2.90
5040 8071 7.822822 GTGGTTTGTAGTACCATTTCTATCTGT 59.177 37.037 0.00 0.00 46.63 3.41
5041 8072 8.380099 TGGTTTGTAGTACCATTTCTATCTGTT 58.620 33.333 0.00 0.00 40.65 3.16
5042 8073 9.227777 GGTTTGTAGTACCATTTCTATCTGTTT 57.772 33.333 0.00 0.00 35.67 2.83
5046 8077 9.787435 TGTAGTACCATTTCTATCTGTTTTTGT 57.213 29.630 0.00 0.00 0.00 2.83
5052 8083 9.533253 ACCATTTCTATCTGTTTTTGTTTTCAG 57.467 29.630 0.00 0.00 0.00 3.02
5053 8084 8.981647 CCATTTCTATCTGTTTTTGTTTTCAGG 58.018 33.333 0.00 0.00 0.00 3.86
5054 8085 9.533253 CATTTCTATCTGTTTTTGTTTTCAGGT 57.467 29.630 0.00 0.00 0.00 4.00
5055 8086 8.925161 TTTCTATCTGTTTTTGTTTTCAGGTG 57.075 30.769 0.00 0.00 0.00 4.00
5056 8087 7.873719 TCTATCTGTTTTTGTTTTCAGGTGA 57.126 32.000 0.00 0.00 0.00 4.02
5057 8088 8.287439 TCTATCTGTTTTTGTTTTCAGGTGAA 57.713 30.769 0.00 0.00 0.00 3.18
5058 8089 8.912988 TCTATCTGTTTTTGTTTTCAGGTGAAT 58.087 29.630 0.00 0.00 33.54 2.57
5059 8090 7.775397 ATCTGTTTTTGTTTTCAGGTGAATG 57.225 32.000 0.00 0.00 33.54 2.67
5060 8091 6.105333 TCTGTTTTTGTTTTCAGGTGAATGG 58.895 36.000 0.00 0.00 33.54 3.16
5061 8092 5.181748 TGTTTTTGTTTTCAGGTGAATGGG 58.818 37.500 0.00 0.00 33.54 4.00
5062 8093 5.046304 TGTTTTTGTTTTCAGGTGAATGGGA 60.046 36.000 0.00 0.00 33.54 4.37
5063 8094 4.664150 TTTGTTTTCAGGTGAATGGGAC 57.336 40.909 0.00 0.00 33.54 4.46
5064 8095 2.593026 TGTTTTCAGGTGAATGGGACC 58.407 47.619 0.00 0.00 33.54 4.46
5065 8096 2.091610 TGTTTTCAGGTGAATGGGACCA 60.092 45.455 0.00 0.00 35.76 4.02
5066 8097 2.962421 GTTTTCAGGTGAATGGGACCAA 59.038 45.455 0.00 0.00 35.76 3.67
5067 8098 3.320610 TTTCAGGTGAATGGGACCAAA 57.679 42.857 0.00 0.00 35.76 3.28
5068 8099 3.541242 TTCAGGTGAATGGGACCAAAT 57.459 42.857 0.00 0.00 35.76 2.32
5069 8100 3.541242 TCAGGTGAATGGGACCAAATT 57.459 42.857 0.00 0.00 35.76 1.82
5070 8101 4.666412 TCAGGTGAATGGGACCAAATTA 57.334 40.909 0.00 0.00 35.76 1.40
5071 8102 5.205517 TCAGGTGAATGGGACCAAATTAT 57.794 39.130 0.00 0.00 35.76 1.28
5072 8103 6.334378 TCAGGTGAATGGGACCAAATTATA 57.666 37.500 0.00 0.00 35.76 0.98
5073 8104 6.921412 TCAGGTGAATGGGACCAAATTATAT 58.079 36.000 0.00 0.00 35.76 0.86
5074 8105 7.004086 TCAGGTGAATGGGACCAAATTATATC 58.996 38.462 0.00 0.00 35.76 1.63
5075 8106 7.006509 CAGGTGAATGGGACCAAATTATATCT 58.993 38.462 0.00 0.00 35.76 1.98
5076 8107 7.175641 CAGGTGAATGGGACCAAATTATATCTC 59.824 40.741 0.00 0.00 35.76 2.75
5077 8108 7.004086 GGTGAATGGGACCAAATTATATCTCA 58.996 38.462 0.00 0.00 33.25 3.27
5078 8109 7.671398 GGTGAATGGGACCAAATTATATCTCAT 59.329 37.037 0.00 0.00 33.60 2.90
5079 8110 8.734386 GTGAATGGGACCAAATTATATCTCATC 58.266 37.037 0.00 0.00 30.88 2.92
5080 8111 8.672329 TGAATGGGACCAAATTATATCTCATCT 58.328 33.333 0.00 0.00 30.88 2.90
5083 8114 8.972662 TGGGACCAAATTATATCTCATCTAGA 57.027 34.615 0.00 0.00 39.02 2.43
5084 8115 9.566331 TGGGACCAAATTATATCTCATCTAGAT 57.434 33.333 0.00 0.00 46.95 1.98
5085 8116 9.829507 GGGACCAAATTATATCTCATCTAGATG 57.170 37.037 24.32 24.32 44.95 2.90
5096 8127 4.731313 TCATCTAGATGAGTCCTAGGCA 57.269 45.455 27.93 5.44 42.42 4.75
5097 8128 4.402829 TCATCTAGATGAGTCCTAGGCAC 58.597 47.826 27.93 3.51 42.42 5.01
5098 8129 4.105537 TCATCTAGATGAGTCCTAGGCACT 59.894 45.833 27.93 8.73 42.42 4.40
5099 8130 4.093472 TCTAGATGAGTCCTAGGCACTC 57.907 50.000 23.77 23.77 41.75 3.51
5100 8131 2.080654 AGATGAGTCCTAGGCACTCC 57.919 55.000 25.80 17.10 39.78 3.85
5101 8132 1.044611 GATGAGTCCTAGGCACTCCC 58.955 60.000 25.80 18.36 39.78 4.30
5102 8133 0.339859 ATGAGTCCTAGGCACTCCCA 59.660 55.000 25.80 16.20 39.78 4.37
5107 8138 2.649816 AGTCCTAGGCACTCCCATTTTT 59.350 45.455 2.96 0.00 41.75 1.94
5129 8160 0.316522 TCTATGCCTGATCTGCTCGC 59.683 55.000 8.84 1.79 0.00 5.03
5147 8178 1.202290 CGCTGAACCTTTGCAACAACT 60.202 47.619 0.00 0.00 0.00 3.16
5194 8225 1.967319 TGAGTCTTGTTGCAACCCTC 58.033 50.000 26.14 22.46 0.00 4.30
5311 8342 6.577103 TGTTGCAATCCTCAAACAACATTTA 58.423 32.000 0.59 0.00 43.99 1.40
5314 8345 8.558700 GTTGCAATCCTCAAACAACATTTATTT 58.441 29.630 0.59 0.00 40.20 1.40
5315 8346 8.309163 TGCAATCCTCAAACAACATTTATTTC 57.691 30.769 0.00 0.00 0.00 2.17
5316 8347 7.930325 TGCAATCCTCAAACAACATTTATTTCA 59.070 29.630 0.00 0.00 0.00 2.69
5317 8348 8.772705 GCAATCCTCAAACAACATTTATTTCAA 58.227 29.630 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.942410 TTTCGTGCACGTCCAGTAGC 60.942 55.000 35.74 0.00 40.80 3.58
12 13 0.650512 AGTCACAGTTTTCGTGCACG 59.349 50.000 32.76 32.76 41.45 5.34
16 17 0.232303 GCCGAGTCACAGTTTTCGTG 59.768 55.000 0.00 0.00 35.63 4.35
65 66 5.182001 GTGTGCTGTGGAATATCAAAGTCTT 59.818 40.000 0.00 0.00 0.00 3.01
114 115 0.527113 CATGTTCCATTTCGGCAGCA 59.473 50.000 0.00 0.00 33.14 4.41
115 116 0.179129 CCATGTTCCATTTCGGCAGC 60.179 55.000 0.00 0.00 33.14 5.25
139 140 0.322546 GACATGGGTTCCACCACCTC 60.323 60.000 0.00 0.00 44.72 3.85
200 201 2.290122 ATCGGCGCTCTCTTGTGGAG 62.290 60.000 7.64 0.00 43.12 3.86
201 202 2.351244 ATCGGCGCTCTCTTGTGGA 61.351 57.895 7.64 0.00 0.00 4.02
202 203 2.169789 CATCGGCGCTCTCTTGTGG 61.170 63.158 7.64 0.00 0.00 4.17
277 281 1.421410 CCATTACAGCCGCTGTCGTC 61.421 60.000 28.95 0.00 41.21 4.20
280 284 2.813179 CGCCATTACAGCCGCTGTC 61.813 63.158 28.95 13.55 41.21 3.51
297 301 4.410400 GGGTGTGAGGAAGGGGCG 62.410 72.222 0.00 0.00 0.00 6.13
321 325 4.704540 TCCTCTCTGACTTTGAGACAGATC 59.295 45.833 9.79 0.00 43.73 2.75
332 336 5.541868 TCATGTCTCTTTTCCTCTCTGACTT 59.458 40.000 0.00 0.00 0.00 3.01
375 379 7.724490 TCTAATCCCTACATATCTGGACATG 57.276 40.000 0.00 0.00 0.00 3.21
420 424 1.450312 CCAATCACGGCAGACTCCC 60.450 63.158 0.00 0.00 0.00 4.30
463 467 1.105457 TCATGCTGCATAACAAGCCC 58.895 50.000 15.78 0.00 0.00 5.19
466 470 4.497966 CGACAAATCATGCTGCATAACAAG 59.502 41.667 15.78 8.23 0.00 3.16
537 552 9.733556 ATCATTATACAGAGGAGTAGTAGAGTG 57.266 37.037 0.00 0.00 0.00 3.51
559 616 6.934056 AGAAATATAAGAGCGCTCAGATCAT 58.066 36.000 36.87 22.66 37.82 2.45
566 623 7.863375 TCTCTGTAAAGAAATATAAGAGCGCTC 59.137 37.037 30.01 30.01 0.00 5.03
638 695 8.355169 GTGTAAATACAACACCTATCTCCGATA 58.645 37.037 0.00 0.00 41.10 2.92
653 713 4.275443 ACGCGGAAAAAGGTGTAAATACAA 59.725 37.500 12.47 0.00 38.04 2.41
666 726 2.605818 CTGATATTCGGACGCGGAAAAA 59.394 45.455 12.47 0.00 0.00 1.94
667 727 2.198406 CTGATATTCGGACGCGGAAAA 58.802 47.619 12.47 0.00 0.00 2.29
668 728 1.847818 CTGATATTCGGACGCGGAAA 58.152 50.000 12.47 0.00 0.00 3.13
678 738 6.259608 ACATTTTCTCCTGAAGCTGATATTCG 59.740 38.462 0.00 0.00 33.28 3.34
716 776 0.795085 CTTCGCCTGAAGTTGCTCAG 59.205 55.000 0.00 0.00 45.38 3.35
741 801 2.369394 GGGCCACATTTTCTACTCCTG 58.631 52.381 4.39 0.00 0.00 3.86
808 876 2.360852 TGTCTCGGACCGTCTCCC 60.361 66.667 14.79 0.00 35.21 4.30
809 877 1.370587 CTCTGTCTCGGACCGTCTCC 61.371 65.000 14.79 1.36 35.33 3.71
823 891 1.593787 CCATCGCACTGGACTCTGT 59.406 57.895 0.00 0.00 38.69 3.41
1019 1088 2.579787 GGACGGTGTGATCGAGCG 60.580 66.667 12.94 12.94 40.12 5.03
1070 1145 3.242969 CCAGGCACGATCATCAAATCAAG 60.243 47.826 0.00 0.00 0.00 3.02
1090 1165 2.293399 GGAAAAGAAGAAAAGAGCGCCA 59.707 45.455 2.29 0.00 0.00 5.69
1100 1175 1.512156 GCGCACGGGGAAAAGAAGAA 61.512 55.000 0.30 0.00 0.00 2.52
1101 1176 1.964373 GCGCACGGGGAAAAGAAGA 60.964 57.895 0.30 0.00 0.00 2.87
1102 1177 2.561373 GCGCACGGGGAAAAGAAG 59.439 61.111 0.30 0.00 0.00 2.85
1133 1208 4.776322 TGCGCAACAGGGGATCGG 62.776 66.667 8.16 0.00 0.00 4.18
1206 1281 5.648033 ATGAATGAAACACGATCGATCAG 57.352 39.130 24.34 17.80 0.00 2.90
1234 1317 0.802994 TGCTACGGCGGAATTACACG 60.803 55.000 13.24 0.58 42.25 4.49
1243 1326 0.672401 TTTCTTCCTTGCTACGGCGG 60.672 55.000 13.24 0.00 42.25 6.13
1244 1327 1.062587 CATTTCTTCCTTGCTACGGCG 59.937 52.381 4.80 4.80 42.25 6.46
1248 1331 4.096984 CCATGGACATTTCTTCCTTGCTAC 59.903 45.833 5.56 0.00 37.10 3.58
1249 1332 4.263905 ACCATGGACATTTCTTCCTTGCTA 60.264 41.667 21.47 0.00 37.10 3.49
1250 1333 3.094572 CCATGGACATTTCTTCCTTGCT 58.905 45.455 5.56 0.00 37.10 3.91
1252 1335 3.828451 ACACCATGGACATTTCTTCCTTG 59.172 43.478 21.47 3.47 37.81 3.61
1282 1365 8.981647 CAAAATTTCAGGAAGATGGTAAAACAG 58.018 33.333 0.00 0.00 0.00 3.16
1293 1376 4.975631 TCGGGTACAAAATTTCAGGAAGA 58.024 39.130 0.00 0.00 0.00 2.87
1296 1379 5.433526 CCTATCGGGTACAAAATTTCAGGA 58.566 41.667 0.00 0.00 0.00 3.86
1561 1656 3.945285 CCTTATACAGGTGACGCCAATTT 59.055 43.478 7.99 0.00 37.99 1.82
1590 1685 2.307768 ACGGATAATTCCAGCTCGAGA 58.692 47.619 18.75 0.00 42.74 4.04
1745 1865 3.300667 GAAACGAGCCACAGCAGCG 62.301 63.158 0.00 0.00 43.56 5.18
1866 1997 2.176546 CGCACATTGAGCCCAACG 59.823 61.111 0.31 0.00 34.72 4.10
1893 2024 2.096069 CACAATGACCAGAACAGCTTCG 60.096 50.000 0.00 0.00 0.00 3.79
2020 2152 0.113190 ACAGGGAAAGGCAAGAAGGG 59.887 55.000 0.00 0.00 0.00 3.95
2023 2155 0.106268 TGCACAGGGAAAGGCAAGAA 60.106 50.000 0.00 0.00 32.54 2.52
2024 2156 0.112995 ATGCACAGGGAAAGGCAAGA 59.887 50.000 0.00 0.00 40.02 3.02
2077 2210 0.991920 ATGACACCCCCAAGTACCTG 59.008 55.000 0.00 0.00 0.00 4.00
2148 2281 1.134037 AGCGACTACCAGAGGAGTAGG 60.134 57.143 3.26 0.00 41.28 3.18
2188 2321 1.740664 GAACGAGGCGGTTTCCCTC 60.741 63.158 0.00 0.00 44.35 4.30
2288 2427 7.558444 AGAGCTATTTGCACTCTTAGTAGTAGT 59.442 37.037 0.00 0.00 45.94 2.73
2341 2480 0.739462 TGGCACACGGATTCGACATC 60.739 55.000 0.00 0.00 40.11 3.06
2342 2481 1.295101 TGGCACACGGATTCGACAT 59.705 52.632 0.00 0.00 40.11 3.06
2354 2493 1.823470 GAACAGCAGGTGTGGCACA 60.823 57.895 17.96 17.96 40.26 4.57
2360 2499 1.064758 TGAACTTGGAACAGCAGGTGT 60.065 47.619 0.00 0.00 42.39 4.16
2367 2506 4.199310 TCCTTTCTGTGAACTTGGAACAG 58.801 43.478 0.00 0.00 42.39 3.16
2563 2770 6.220579 CGGTAAGCAGAATGATAAGTGATG 57.779 41.667 0.00 0.00 39.69 3.07
2587 2794 4.160626 ACTTTGGCTCTTAGCTAGGTAGTG 59.839 45.833 2.43 0.32 41.99 2.74
2670 2877 7.224753 CGCTATGGTGAGTATGTTTGATAAAGT 59.775 37.037 0.00 0.00 0.00 2.66
2671 2878 7.567571 CGCTATGGTGAGTATGTTTGATAAAG 58.432 38.462 0.00 0.00 0.00 1.85
2673 2880 5.465390 GCGCTATGGTGAGTATGTTTGATAA 59.535 40.000 0.00 0.00 0.00 1.75
2696 2907 4.273480 TCTCGGCTAAATAATCAAGCAAGC 59.727 41.667 0.00 0.00 38.01 4.01
2761 3718 4.868314 AGGTAAGTGAGGACAACACTAC 57.132 45.455 0.00 0.00 46.01 2.73
2882 3839 4.670175 GCAAACGCAAACAAATCAATTTCC 59.330 37.500 0.00 0.00 0.00 3.13
2921 3878 1.675310 CGTTGCTGCCTCCAATGGA 60.675 57.895 0.48 0.48 0.00 3.41
2995 3958 7.119709 TGTGCTACAAAGATATTGCTAGGTA 57.880 36.000 0.00 0.00 0.00 3.08
3078 4041 8.792633 TCCTATCACCATTTTTGTGAAACTAAG 58.207 33.333 0.00 0.00 45.15 2.18
3138 4102 6.992123 TGTCAATTATACAGTCCAATAGCCTG 59.008 38.462 0.00 0.00 0.00 4.85
3190 4154 4.306600 CAAAATGGCCAACCTGTAGAAAC 58.693 43.478 10.96 0.00 36.63 2.78
3198 4162 2.539302 AGTATGCAAAATGGCCAACCT 58.461 42.857 10.96 0.00 36.63 3.50
3256 4220 3.800506 GCCAGCAAATAGATCAATGTTGC 59.199 43.478 12.75 12.75 43.83 4.17
3437 4401 1.539065 CCACGCACTGAGAACTCTGTT 60.539 52.381 10.72 0.00 39.29 3.16
3509 4494 0.323360 CCGGAATTCCAGCCAAAGGA 60.323 55.000 24.09 0.00 35.14 3.36
3534 4519 6.082338 CAGAAGAGTTTGATCCATTGAAACG 58.918 40.000 0.00 0.00 35.23 3.60
3581 4566 3.002348 GTGTTGGTTCAGTAACAGCTGAC 59.998 47.826 23.35 9.33 44.23 3.51
3622 4607 2.161211 GGACTGCAATCAGAACTCTTGC 59.839 50.000 0.00 10.01 42.95 4.01
3672 4657 2.106938 TGATCCCTCATGCGACGC 59.893 61.111 14.19 14.19 0.00 5.19
3680 4665 4.451150 GCCGTGCGTGATCCCTCA 62.451 66.667 0.00 0.00 0.00 3.86
3703 4688 3.244387 TGACTCGTTCATGGATTTGGTGA 60.244 43.478 0.00 0.00 0.00 4.02
3753 4738 3.117589 CAGCTGGTTTTGATGCTGC 57.882 52.632 5.57 0.00 44.72 5.25
3868 4855 9.547753 ACAAATAAATCGTCATTAGCAGAGTAT 57.452 29.630 0.00 0.00 0.00 2.12
3934 4922 2.733227 GCAACAGGGATGCAGAAATTCG 60.733 50.000 0.00 0.00 43.29 3.34
3935 4923 2.884827 GCAACAGGGATGCAGAAATTC 58.115 47.619 0.00 0.00 43.29 2.17
3943 4933 2.747396 TGATTTTGCAACAGGGATGC 57.253 45.000 0.00 0.00 44.08 3.91
3945 4935 4.467082 TGCTAATGATTTTGCAACAGGGAT 59.533 37.500 0.00 0.00 39.96 3.85
3966 4956 7.206981 ACCATAACTCATGTTATAGCATTGC 57.793 36.000 0.00 0.00 44.78 3.56
4023 5013 2.140717 GGTAACTGGAACCACAAGTCG 58.859 52.381 0.00 0.00 36.96 4.18
4031 5021 1.958579 GGTTTGTGGGTAACTGGAACC 59.041 52.381 0.00 0.00 36.19 3.62
4121 5169 4.778534 ACAGTCAAGAAATGCAGGAATG 57.221 40.909 0.00 0.00 0.00 2.67
4167 5217 2.553602 TGCTGCACATCACCAAAAGTAG 59.446 45.455 0.00 0.00 0.00 2.57
4168 5218 2.580962 TGCTGCACATCACCAAAAGTA 58.419 42.857 0.00 0.00 0.00 2.24
4504 5555 6.929625 AGCATCTCTATAACGCAGATTACAT 58.070 36.000 0.00 0.00 0.00 2.29
4550 7576 3.779759 TGCACAAAGTTCATTCGCTTTT 58.220 36.364 0.00 0.00 33.19 2.27
4554 7580 2.046313 CACTGCACAAAGTTCATTCGC 58.954 47.619 0.00 0.00 0.00 4.70
4555 7581 3.002656 AGTCACTGCACAAAGTTCATTCG 59.997 43.478 0.00 0.00 0.00 3.34
4557 7583 3.067180 CCAGTCACTGCACAAAGTTCATT 59.933 43.478 0.00 0.00 0.00 2.57
4559 7585 2.016318 CCAGTCACTGCACAAAGTTCA 58.984 47.619 0.00 0.00 0.00 3.18
4560 7586 2.288666 TCCAGTCACTGCACAAAGTTC 58.711 47.619 0.00 0.00 0.00 3.01
4561 7587 2.418368 TCCAGTCACTGCACAAAGTT 57.582 45.000 0.00 0.00 0.00 2.66
4594 7622 2.956964 CTCGCGCGATTCTGACCC 60.957 66.667 34.86 0.00 0.00 4.46
4606 7634 3.041940 AACAAACCGAGCCTCGCG 61.042 61.111 9.01 0.00 38.82 5.87
4607 7635 1.959226 TCAACAAACCGAGCCTCGC 60.959 57.895 9.01 0.00 38.82 5.03
4608 7636 0.600255 AGTCAACAAACCGAGCCTCG 60.600 55.000 7.25 7.25 40.07 4.63
4609 7637 0.868406 CAGTCAACAAACCGAGCCTC 59.132 55.000 0.00 0.00 0.00 4.70
4610 7638 1.166531 GCAGTCAACAAACCGAGCCT 61.167 55.000 0.00 0.00 0.00 4.58
4611 7639 1.282875 GCAGTCAACAAACCGAGCC 59.717 57.895 0.00 0.00 0.00 4.70
4612 7640 1.082756 CGCAGTCAACAAACCGAGC 60.083 57.895 0.00 0.00 0.00 5.03
4613 7641 1.455786 CTACGCAGTCAACAAACCGAG 59.544 52.381 0.00 0.00 43.93 4.63
4614 7642 1.067364 TCTACGCAGTCAACAAACCGA 59.933 47.619 0.00 0.00 43.93 4.69
4615 7643 1.493772 TCTACGCAGTCAACAAACCG 58.506 50.000 0.00 0.00 43.93 4.44
4616 7644 3.955771 TTTCTACGCAGTCAACAAACC 57.044 42.857 0.00 0.00 43.93 3.27
4617 7645 4.675114 CCAATTTCTACGCAGTCAACAAAC 59.325 41.667 0.00 0.00 43.93 2.93
4618 7646 4.336993 ACCAATTTCTACGCAGTCAACAAA 59.663 37.500 0.00 0.00 43.93 2.83
4704 7732 1.151668 CACGAAAAGGGAGCAGACAG 58.848 55.000 0.00 0.00 0.00 3.51
4705 7733 0.756294 TCACGAAAAGGGAGCAGACA 59.244 50.000 0.00 0.00 0.00 3.41
4728 7756 1.301165 CTTGTTGCAAAGGCCCAGC 60.301 57.895 0.00 0.95 40.13 4.85
4730 7758 0.396974 AGACTTGTTGCAAAGGCCCA 60.397 50.000 0.00 0.00 35.62 5.36
4756 7784 0.780002 CGTGTTGCAAAGCATTGAGC 59.220 50.000 5.73 0.00 46.19 4.26
4761 7789 0.670162 AAGCTCGTGTTGCAAAGCAT 59.330 45.000 19.98 7.99 38.76 3.79
4809 7840 5.005779 CAGAATTGGACGACTAGCATACAAC 59.994 44.000 0.00 0.00 0.00 3.32
4817 7848 3.849911 TCAAGCAGAATTGGACGACTAG 58.150 45.455 0.00 0.00 0.00 2.57
4888 7919 0.823356 TCAAGGCACTCCAACAAGGC 60.823 55.000 0.00 0.00 38.49 4.35
4914 7945 3.219281 AGTTCTAGCAAAGCCGGAAAAA 58.781 40.909 5.05 0.00 0.00 1.94
4915 7946 2.812011 GAGTTCTAGCAAAGCCGGAAAA 59.188 45.455 5.05 0.00 0.00 2.29
4916 7947 2.224426 TGAGTTCTAGCAAAGCCGGAAA 60.224 45.455 5.05 0.00 0.00 3.13
4917 7948 1.346395 TGAGTTCTAGCAAAGCCGGAA 59.654 47.619 5.05 0.00 0.00 4.30
4918 7949 0.973632 TGAGTTCTAGCAAAGCCGGA 59.026 50.000 5.05 0.00 0.00 5.14
4919 7950 1.936547 GATGAGTTCTAGCAAAGCCGG 59.063 52.381 0.00 0.00 0.00 6.13
4920 7951 2.898705 AGATGAGTTCTAGCAAAGCCG 58.101 47.619 0.00 0.00 30.96 5.52
4935 7966 8.972127 AGACATAACTAAAACTCAGCTAGATGA 58.028 33.333 10.81 10.81 0.00 2.92
4936 7967 9.243637 GAGACATAACTAAAACTCAGCTAGATG 57.756 37.037 0.24 0.24 0.00 2.90
4937 7968 8.972127 TGAGACATAACTAAAACTCAGCTAGAT 58.028 33.333 0.00 0.00 32.04 1.98
4938 7969 8.349568 TGAGACATAACTAAAACTCAGCTAGA 57.650 34.615 0.00 0.00 32.04 2.43
4939 7970 9.593134 AATGAGACATAACTAAAACTCAGCTAG 57.407 33.333 0.00 0.00 37.70 3.42
4940 7971 9.587772 GAATGAGACATAACTAAAACTCAGCTA 57.412 33.333 0.00 0.00 37.70 3.32
4941 7972 8.097038 TGAATGAGACATAACTAAAACTCAGCT 58.903 33.333 0.00 0.00 37.70 4.24
4942 7973 8.171840 GTGAATGAGACATAACTAAAACTCAGC 58.828 37.037 0.00 0.00 37.70 4.26
4943 7974 9.429359 AGTGAATGAGACATAACTAAAACTCAG 57.571 33.333 0.00 0.00 37.70 3.35
4944 7975 9.778741 AAGTGAATGAGACATAACTAAAACTCA 57.221 29.630 0.00 0.00 38.44 3.41
4952 7983 9.331282 GGCTATAAAAGTGAATGAGACATAACT 57.669 33.333 0.00 0.00 0.00 2.24
4953 7984 9.109393 TGGCTATAAAAGTGAATGAGACATAAC 57.891 33.333 0.00 0.00 0.00 1.89
4954 7985 9.851686 ATGGCTATAAAAGTGAATGAGACATAA 57.148 29.630 0.00 0.00 29.38 1.90
4955 7986 9.851686 AATGGCTATAAAAGTGAATGAGACATA 57.148 29.630 0.00 0.00 30.97 2.29
4956 7987 8.627403 CAATGGCTATAAAAGTGAATGAGACAT 58.373 33.333 0.00 0.00 32.53 3.06
4957 7988 7.067372 CCAATGGCTATAAAAGTGAATGAGACA 59.933 37.037 0.00 0.00 0.00 3.41
4958 7989 7.283127 TCCAATGGCTATAAAAGTGAATGAGAC 59.717 37.037 0.00 0.00 0.00 3.36
4959 7990 7.345691 TCCAATGGCTATAAAAGTGAATGAGA 58.654 34.615 0.00 0.00 0.00 3.27
4960 7991 7.572523 TCCAATGGCTATAAAAGTGAATGAG 57.427 36.000 0.00 0.00 0.00 2.90
4961 7992 8.415553 CAATCCAATGGCTATAAAAGTGAATGA 58.584 33.333 0.00 0.00 0.00 2.57
4962 7993 8.415553 TCAATCCAATGGCTATAAAAGTGAATG 58.584 33.333 0.00 0.00 0.00 2.67
4963 7994 8.537728 TCAATCCAATGGCTATAAAAGTGAAT 57.462 30.769 0.00 0.00 0.00 2.57
4964 7995 7.953005 TCAATCCAATGGCTATAAAAGTGAA 57.047 32.000 0.00 0.00 0.00 3.18
4965 7996 9.066892 GTATCAATCCAATGGCTATAAAAGTGA 57.933 33.333 0.00 0.00 0.00 3.41
4966 7997 9.071276 AGTATCAATCCAATGGCTATAAAAGTG 57.929 33.333 0.00 0.00 0.00 3.16
4975 8006 7.555554 GCATCTTATAGTATCAATCCAATGGCT 59.444 37.037 0.00 0.00 0.00 4.75
4976 8007 7.466455 CGCATCTTATAGTATCAATCCAATGGC 60.466 40.741 0.00 0.00 0.00 4.40
4977 8008 7.550551 ACGCATCTTATAGTATCAATCCAATGG 59.449 37.037 0.00 0.00 0.00 3.16
4978 8009 8.385858 CACGCATCTTATAGTATCAATCCAATG 58.614 37.037 0.00 0.00 0.00 2.82
4979 8010 8.097038 ACACGCATCTTATAGTATCAATCCAAT 58.903 33.333 0.00 0.00 0.00 3.16
4980 8011 7.384932 CACACGCATCTTATAGTATCAATCCAA 59.615 37.037 0.00 0.00 0.00 3.53
4981 8012 6.868339 CACACGCATCTTATAGTATCAATCCA 59.132 38.462 0.00 0.00 0.00 3.41
4982 8013 6.868864 ACACACGCATCTTATAGTATCAATCC 59.131 38.462 0.00 0.00 0.00 3.01
4983 8014 7.620188 GCACACACGCATCTTATAGTATCAATC 60.620 40.741 0.00 0.00 0.00 2.67
4984 8015 6.146184 GCACACACGCATCTTATAGTATCAAT 59.854 38.462 0.00 0.00 0.00 2.57
4985 8016 5.462068 GCACACACGCATCTTATAGTATCAA 59.538 40.000 0.00 0.00 0.00 2.57
4986 8017 4.982295 GCACACACGCATCTTATAGTATCA 59.018 41.667 0.00 0.00 0.00 2.15
4987 8018 5.117745 CAGCACACACGCATCTTATAGTATC 59.882 44.000 0.00 0.00 0.00 2.24
4988 8019 4.984785 CAGCACACACGCATCTTATAGTAT 59.015 41.667 0.00 0.00 0.00 2.12
4989 8020 4.097286 TCAGCACACACGCATCTTATAGTA 59.903 41.667 0.00 0.00 0.00 1.82
4990 8021 3.119137 TCAGCACACACGCATCTTATAGT 60.119 43.478 0.00 0.00 0.00 2.12
4991 8022 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
4992 8023 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
4993 8024 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
4994 8025 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
4995 8026 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
4996 8027 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
4997 8028 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
4998 8029 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
4999 8030 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
5000 8031 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
5001 8032 1.701545 AAACCACGTCAGCACACACG 61.702 55.000 0.00 0.00 41.90 4.49
5002 8033 0.248054 CAAACCACGTCAGCACACAC 60.248 55.000 0.00 0.00 0.00 3.82
5003 8034 0.675208 ACAAACCACGTCAGCACACA 60.675 50.000 0.00 0.00 0.00 3.72
5004 8035 1.260561 CTACAAACCACGTCAGCACAC 59.739 52.381 0.00 0.00 0.00 3.82
5005 8036 1.134640 ACTACAAACCACGTCAGCACA 60.135 47.619 0.00 0.00 0.00 4.57
5006 8037 1.578583 ACTACAAACCACGTCAGCAC 58.421 50.000 0.00 0.00 0.00 4.40
5007 8038 2.546373 GGTACTACAAACCACGTCAGCA 60.546 50.000 0.00 0.00 36.96 4.41
5008 8039 2.064014 GGTACTACAAACCACGTCAGC 58.936 52.381 0.00 0.00 36.96 4.26
5009 8040 3.374220 TGGTACTACAAACCACGTCAG 57.626 47.619 0.00 0.00 42.10 3.51
5016 8047 8.788325 AACAGATAGAAATGGTACTACAAACC 57.212 34.615 0.00 0.00 37.53 3.27
5020 8051 9.787435 ACAAAAACAGATAGAAATGGTACTACA 57.213 29.630 0.00 0.00 0.00 2.74
5026 8057 9.533253 CTGAAAACAAAAACAGATAGAAATGGT 57.467 29.630 0.00 0.00 32.90 3.55
5027 8058 8.981647 CCTGAAAACAAAAACAGATAGAAATGG 58.018 33.333 0.00 0.00 32.90 3.16
5028 8059 9.533253 ACCTGAAAACAAAAACAGATAGAAATG 57.467 29.630 0.00 0.00 32.90 2.32
5029 8060 9.533253 CACCTGAAAACAAAAACAGATAGAAAT 57.467 29.630 0.00 0.00 32.90 2.17
5030 8061 8.744652 TCACCTGAAAACAAAAACAGATAGAAA 58.255 29.630 0.00 0.00 32.90 2.52
5031 8062 8.287439 TCACCTGAAAACAAAAACAGATAGAA 57.713 30.769 0.00 0.00 32.90 2.10
5032 8063 7.873719 TCACCTGAAAACAAAAACAGATAGA 57.126 32.000 0.00 0.00 32.90 1.98
5033 8064 8.971321 CATTCACCTGAAAACAAAAACAGATAG 58.029 33.333 0.00 0.00 37.61 2.08
5034 8065 7.925483 CCATTCACCTGAAAACAAAAACAGATA 59.075 33.333 0.00 0.00 37.61 1.98
5035 8066 6.762661 CCATTCACCTGAAAACAAAAACAGAT 59.237 34.615 0.00 0.00 37.61 2.90
5036 8067 6.105333 CCATTCACCTGAAAACAAAAACAGA 58.895 36.000 0.00 0.00 37.61 3.41
5037 8068 5.294060 CCCATTCACCTGAAAACAAAAACAG 59.706 40.000 0.00 0.00 37.61 3.16
5038 8069 5.046304 TCCCATTCACCTGAAAACAAAAACA 60.046 36.000 0.00 0.00 37.61 2.83
5039 8070 5.293324 GTCCCATTCACCTGAAAACAAAAAC 59.707 40.000 0.00 0.00 37.61 2.43
5040 8071 5.423886 GTCCCATTCACCTGAAAACAAAAA 58.576 37.500 0.00 0.00 37.61 1.94
5041 8072 4.141824 GGTCCCATTCACCTGAAAACAAAA 60.142 41.667 0.00 0.00 37.61 2.44
5042 8073 3.386402 GGTCCCATTCACCTGAAAACAAA 59.614 43.478 0.00 0.00 37.61 2.83
5043 8074 2.962421 GGTCCCATTCACCTGAAAACAA 59.038 45.455 0.00 0.00 37.61 2.83
5044 8075 2.091610 TGGTCCCATTCACCTGAAAACA 60.092 45.455 0.00 0.00 37.61 2.83
5045 8076 2.593026 TGGTCCCATTCACCTGAAAAC 58.407 47.619 0.00 0.00 37.61 2.43
5046 8077 3.320610 TTGGTCCCATTCACCTGAAAA 57.679 42.857 0.00 0.00 37.61 2.29
5047 8078 3.320610 TTTGGTCCCATTCACCTGAAA 57.679 42.857 0.00 0.00 37.61 2.69
5048 8079 3.541242 ATTTGGTCCCATTCACCTGAA 57.459 42.857 0.00 0.00 38.56 3.02
5049 8080 3.541242 AATTTGGTCCCATTCACCTGA 57.459 42.857 0.00 0.00 34.66 3.86
5050 8081 7.006509 AGATATAATTTGGTCCCATTCACCTG 58.993 38.462 0.00 0.00 34.66 4.00
5051 8082 7.147141 TGAGATATAATTTGGTCCCATTCACCT 60.147 37.037 0.00 0.00 34.66 4.00
5052 8083 7.004086 TGAGATATAATTTGGTCCCATTCACC 58.996 38.462 0.00 0.00 0.00 4.02
5053 8084 8.641498 ATGAGATATAATTTGGTCCCATTCAC 57.359 34.615 0.00 0.00 0.00 3.18
5054 8085 8.672329 AGATGAGATATAATTTGGTCCCATTCA 58.328 33.333 0.00 0.00 0.00 2.57
5057 8088 9.566331 TCTAGATGAGATATAATTTGGTCCCAT 57.434 33.333 0.00 0.00 0.00 4.00
5058 8089 8.972662 TCTAGATGAGATATAATTTGGTCCCA 57.027 34.615 0.00 0.00 0.00 4.37
5059 8090 9.829507 CATCTAGATGAGATATAATTTGGTCCC 57.170 37.037 25.78 0.00 43.52 4.46
5075 8106 4.105537 AGTGCCTAGGACTCATCTAGATGA 59.894 45.833 29.17 29.17 44.83 2.92
5076 8107 4.406456 AGTGCCTAGGACTCATCTAGATG 58.594 47.826 24.32 24.32 37.08 2.90
5077 8108 4.508405 GGAGTGCCTAGGACTCATCTAGAT 60.508 50.000 27.98 0.00 41.50 1.98
5078 8109 3.181438 GGAGTGCCTAGGACTCATCTAGA 60.181 52.174 27.98 0.00 41.50 2.43
5079 8110 3.153919 GGAGTGCCTAGGACTCATCTAG 58.846 54.545 27.98 0.00 41.50 2.43
5080 8111 2.158445 GGGAGTGCCTAGGACTCATCTA 60.158 54.545 27.98 1.01 41.50 1.98
5081 8112 1.412361 GGGAGTGCCTAGGACTCATCT 60.412 57.143 27.98 13.12 41.50 2.90
5082 8113 1.044611 GGGAGTGCCTAGGACTCATC 58.955 60.000 27.98 20.30 41.50 2.92
5083 8114 0.339859 TGGGAGTGCCTAGGACTCAT 59.660 55.000 27.98 7.60 41.50 2.90
5084 8115 0.339859 ATGGGAGTGCCTAGGACTCA 59.660 55.000 27.98 17.09 41.50 3.41
5085 8116 1.501582 AATGGGAGTGCCTAGGACTC 58.498 55.000 23.03 23.03 39.38 3.36
5086 8117 1.972588 AAATGGGAGTGCCTAGGACT 58.027 50.000 14.75 13.12 0.00 3.85
5087 8118 2.808906 AAAATGGGAGTGCCTAGGAC 57.191 50.000 14.75 8.11 0.00 3.85
5107 8138 3.461061 CGAGCAGATCAGGCATAGAAAA 58.539 45.455 11.35 0.00 0.00 2.29
5113 8144 1.227586 CAGCGAGCAGATCAGGCAT 60.228 57.895 11.35 0.00 0.00 4.40
5129 8160 3.108144 CGAAGTTGTTGCAAAGGTTCAG 58.892 45.455 0.00 0.00 0.00 3.02
5161 8192 1.610522 AGACTCATGTTGCAAAGTGCC 59.389 47.619 0.00 0.00 44.23 5.01
5220 8251 0.938008 GACTTACTAATGGCTGCCGC 59.062 55.000 14.98 0.00 0.00 6.53
5221 8252 2.604046 AGACTTACTAATGGCTGCCG 57.396 50.000 14.98 1.58 0.00 5.69
5222 8253 4.010349 ACAAAGACTTACTAATGGCTGCC 58.990 43.478 12.87 12.87 0.00 4.85
5223 8254 6.148811 TGTTACAAAGACTTACTAATGGCTGC 59.851 38.462 0.00 0.00 0.00 5.25
5224 8255 7.667043 TGTTACAAAGACTTACTAATGGCTG 57.333 36.000 0.00 0.00 0.00 4.85
5225 8256 7.094762 GCTTGTTACAAAGACTTACTAATGGCT 60.095 37.037 0.00 0.00 0.00 4.75
5226 8257 7.021790 GCTTGTTACAAAGACTTACTAATGGC 58.978 38.462 0.00 0.00 0.00 4.40
5227 8258 7.095355 ACGCTTGTTACAAAGACTTACTAATGG 60.095 37.037 0.00 0.00 0.00 3.16
5228 8259 7.793902 ACGCTTGTTACAAAGACTTACTAATG 58.206 34.615 0.00 0.00 0.00 1.90
5229 8260 7.148853 CGACGCTTGTTACAAAGACTTACTAAT 60.149 37.037 0.00 0.00 0.00 1.73
5230 8261 6.142798 CGACGCTTGTTACAAAGACTTACTAA 59.857 38.462 0.00 0.00 0.00 2.24
5231 8262 5.626543 CGACGCTTGTTACAAAGACTTACTA 59.373 40.000 0.00 0.00 0.00 1.82
5232 8263 4.443394 CGACGCTTGTTACAAAGACTTACT 59.557 41.667 0.00 0.00 0.00 2.24
5278 8309 3.582647 TGAGGATTGCAACAAGACTCCTA 59.417 43.478 15.33 4.10 33.36 2.94
5316 8347 2.983791 GCCAATGGCTGCCACATT 59.016 55.556 25.99 13.01 46.69 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.