Multiple sequence alignment - TraesCS3A01G277400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G277400 chr3A 100.000 7783 0 0 1 7783 507294770 507286988 0.000000e+00 14373.0
1 TraesCS3A01G277400 chr3A 86.736 573 36 12 7226 7783 507273896 507273349 1.120000e-167 601.0
2 TraesCS3A01G277400 chr3B 91.032 2152 124 29 1688 3794 500546355 500544228 0.000000e+00 2841.0
3 TraesCS3A01G277400 chr3B 90.571 1750 105 31 6060 7783 500541805 500540090 0.000000e+00 2263.0
4 TraesCS3A01G277400 chr3B 88.099 1210 91 27 4894 6065 500543031 500541837 0.000000e+00 1387.0
5 TraesCS3A01G277400 chr3B 89.844 1093 64 22 3826 4890 500544234 500543161 0.000000e+00 1360.0
6 TraesCS3A01G277400 chr3B 93.679 791 29 6 903 1692 500547262 500546492 0.000000e+00 1164.0
7 TraesCS3A01G277400 chr3B 88.768 641 63 6 246 879 500548288 500547650 0.000000e+00 776.0
8 TraesCS3A01G277400 chr3B 88.911 514 33 11 7286 7783 500308494 500307989 5.160000e-171 612.0
9 TraesCS3A01G277400 chr3B 88.911 514 33 11 7286 7783 500317041 500316536 5.160000e-171 612.0
10 TraesCS3A01G277400 chr3B 92.079 101 3 5 3184 3281 474402100 474402002 3.790000e-28 137.0
11 TraesCS3A01G277400 chr3D 95.367 1662 61 10 1546 3199 384666382 384664729 0.000000e+00 2628.0
12 TraesCS3A01G277400 chr3D 91.638 1746 92 27 6060 7783 384661585 384659872 0.000000e+00 2366.0
13 TraesCS3A01G277400 chr3D 90.413 1210 94 13 4873 6065 384662821 384661617 0.000000e+00 1572.0
14 TraesCS3A01G277400 chr3D 92.562 726 27 13 755 1474 384667084 384666380 0.000000e+00 1016.0
15 TraesCS3A01G277400 chr3D 88.816 760 69 9 7 758 384849798 384849047 0.000000e+00 918.0
16 TraesCS3A01G277400 chr3D 85.250 800 44 13 3539 4293 384664483 384663713 0.000000e+00 756.0
17 TraesCS3A01G277400 chr3D 85.639 571 38 15 7226 7783 384656010 384655471 1.900000e-155 560.0
18 TraesCS3A01G277400 chr3D 83.030 495 39 19 4388 4873 384663334 384662876 2.610000e-109 407.0
19 TraesCS3A01G277400 chr3D 89.796 245 21 3 6709 6952 21769052 21769293 2.110000e-80 311.0
20 TraesCS3A01G277400 chr3D 93.069 202 9 4 3295 3496 384664683 384664487 2.750000e-74 291.0
21 TraesCS3A01G277400 chr3D 94.595 74 1 2 7226 7297 21769418 21769490 2.300000e-20 111.0
22 TraesCS3A01G277400 chr7D 90.204 245 20 3 6709 6952 544154650 544154891 4.530000e-82 316.0
23 TraesCS3A01G277400 chr7D 83.774 265 19 14 7111 7352 544154880 544155143 6.070000e-56 230.0
24 TraesCS3A01G277400 chr7D 78.472 144 25 5 118 259 61753801 61753940 1.080000e-13 89.8
25 TraesCS3A01G277400 chr7D 88.406 69 8 0 1601 1669 608860620 608860688 5.000000e-12 84.2
26 TraesCS3A01G277400 chr7A 88.115 244 25 3 6709 6951 675748976 675749216 3.550000e-73 287.0
27 TraesCS3A01G277400 chr7A 95.349 129 3 2 7226 7352 675749342 675749469 1.320000e-47 202.0
28 TraesCS3A01G277400 chr1B 84.488 303 22 15 7073 7352 659104031 659104331 7.690000e-70 276.0
29 TraesCS3A01G277400 chr1B 80.242 248 45 4 16 261 61007503 61007258 4.800000e-42 183.0
30 TraesCS3A01G277400 chr1B 90.278 72 7 0 1642 1713 433438981 433438910 2.310000e-15 95.3
31 TraesCS3A01G277400 chr4A 83.012 259 20 12 7111 7346 504676272 504676529 6.120000e-51 213.0
32 TraesCS3A01G277400 chr4A 94.681 94 4 1 3196 3288 594030190 594030097 2.260000e-30 145.0
33 TraesCS3A01G277400 chr2D 81.124 249 38 8 16 260 17458149 17458392 2.870000e-44 191.0
34 TraesCS3A01G277400 chr2D 95.699 93 4 0 3195 3287 512165838 512165930 4.860000e-32 150.0
35 TraesCS3A01G277400 chr6D 94.898 98 4 1 3197 3293 142148799 142148702 1.350000e-32 152.0
36 TraesCS3A01G277400 chr5D 94.624 93 5 0 3189 3281 188826527 188826619 2.260000e-30 145.0
37 TraesCS3A01G277400 chr5D 86.957 69 5 2 196 264 560389468 560389404 3.010000e-09 75.0
38 TraesCS3A01G277400 chr7B 95.402 87 4 0 3197 3283 428965929 428965843 1.050000e-28 139.0
39 TraesCS3A01G277400 chr7B 86.538 52 2 4 183 230 141009418 141009368 1.400000e-02 52.8
40 TraesCS3A01G277400 chr5B 93.548 93 6 0 3189 3281 217907675 217907767 1.050000e-28 139.0
41 TraesCS3A01G277400 chr5B 75.527 237 46 10 13 241 9296579 9296347 1.070000e-18 106.0
42 TraesCS3A01G277400 chr4B 93.548 93 3 2 3196 3288 22844122 22844033 1.360000e-27 135.0
43 TraesCS3A01G277400 chr2A 92.553 94 7 0 3196 3289 775976749 775976656 1.360000e-27 135.0
44 TraesCS3A01G277400 chr6B 88.776 98 11 0 1610 1707 60658419 60658516 3.810000e-23 121.0
45 TraesCS3A01G277400 chr1A 75.000 256 47 11 13 261 480443083 480443328 1.380000e-17 102.0
46 TraesCS3A01G277400 chr1A 79.104 134 18 7 1557 1689 158734951 158735075 5.000000e-12 84.2
47 TraesCS3A01G277400 chr2B 74.265 272 51 13 8 268 122737848 122738111 6.430000e-16 97.1
48 TraesCS3A01G277400 chr2B 93.750 48 3 0 7012 7059 676588082 676588035 1.080000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G277400 chr3A 507286988 507294770 7782 True 14373.000000 14373 100.000000 1 7783 1 chr3A.!!$R2 7782
1 TraesCS3A01G277400 chr3A 507273349 507273896 547 True 601.000000 601 86.736000 7226 7783 1 chr3A.!!$R1 557
2 TraesCS3A01G277400 chr3B 500540090 500548288 8198 True 1631.833333 2841 90.332167 246 7783 6 chr3B.!!$R4 7537
3 TraesCS3A01G277400 chr3B 500307989 500308494 505 True 612.000000 612 88.911000 7286 7783 1 chr3B.!!$R2 497
4 TraesCS3A01G277400 chr3B 500316536 500317041 505 True 612.000000 612 88.911000 7286 7783 1 chr3B.!!$R3 497
5 TraesCS3A01G277400 chr3D 384655471 384667084 11613 True 1199.500000 2628 89.621000 755 7783 8 chr3D.!!$R2 7028
6 TraesCS3A01G277400 chr3D 384849047 384849798 751 True 918.000000 918 88.816000 7 758 1 chr3D.!!$R1 751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 758 0.030297 ATGACTCCAGAGAGGGCCAT 60.030 55.000 6.18 0.0 45.11 4.40 F
1424 1823 0.240411 CTGTATCGCGGCTACCTACC 59.760 60.000 6.13 0.0 0.00 3.18 F
2957 3503 0.610232 ATCCCTTGCTGGTTGCTCAC 60.610 55.000 0.00 0.0 43.37 3.51 F
3982 4575 0.407139 AAAAGCTGCCCATCTGGACT 59.593 50.000 0.00 0.0 37.39 3.85 F
4331 4943 1.197492 CGCAGTAGTGAAAATGCAGCA 59.803 47.619 0.00 0.0 38.60 4.41 F
5447 6562 0.538977 GGTCATCCATGCCCATCTGG 60.539 60.000 0.00 0.0 37.09 3.86 F
5943 7064 1.557371 TGAATAAGTCCATGTGGCCGA 59.443 47.619 0.00 0.0 34.44 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2449 2993 0.179468 GGCAGGGGCAATTAGTCGTA 59.821 55.000 0.00 0.00 43.71 3.43 R
3266 3813 0.690077 AATGGTACTCCCTCCGTCCC 60.690 60.000 0.00 0.00 0.00 4.46 R
4714 5620 0.249447 TGTCTCTGTTGACCACTGCG 60.249 55.000 0.00 0.00 36.21 5.18 R
5429 6544 0.184451 ACCAGATGGGCATGGATGAC 59.816 55.000 3.48 0.00 42.05 3.06 R
5987 7112 0.447801 CACCCATAGAAGTTGTGCGC 59.552 55.000 0.00 0.00 0.00 6.09 R
6335 7503 0.249073 CCTCGTCCGGACTAATGCAG 60.249 60.000 30.92 14.47 0.00 4.41 R
6788 7960 1.067776 GTGCGCCTTAGTAGTGTCAGT 60.068 52.381 4.18 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.379302 AAGCTTTGAGACTCCAGGAATT 57.621 40.909 0.00 0.00 0.00 2.17
49 50 0.232303 CGTGTCTTTCACAACGAGCC 59.768 55.000 0.00 0.00 46.44 4.70
77 78 3.371166 CGCCCCTAGATACCCTTCAAAAA 60.371 47.826 0.00 0.00 0.00 1.94
86 87 7.284919 AGATACCCTTCAAAAACATCGTTTT 57.715 32.000 0.00 0.00 0.00 2.43
87 88 8.398878 AGATACCCTTCAAAAACATCGTTTTA 57.601 30.769 5.34 0.00 0.00 1.52
103 104 5.909477 TCGTTTTAGACTTCACTCTTTGGA 58.091 37.500 0.00 0.00 0.00 3.53
109 110 4.455606 AGACTTCACTCTTTGGACCTTTG 58.544 43.478 0.00 0.00 0.00 2.77
110 111 4.080299 AGACTTCACTCTTTGGACCTTTGT 60.080 41.667 0.00 0.00 0.00 2.83
150 151 1.059098 TGGAGGCTGTCATGTCTTGT 58.941 50.000 0.00 0.00 0.00 3.16
152 153 1.002430 GGAGGCTGTCATGTCTTGTGA 59.998 52.381 0.00 0.00 0.00 3.58
159 160 5.410924 GCTGTCATGTCTTGTGACTATACA 58.589 41.667 7.65 0.00 44.80 2.29
166 167 7.998964 TCATGTCTTGTGACTATACATCTCCTA 59.001 37.037 0.00 0.00 43.29 2.94
169 170 7.173390 TGTCTTGTGACTATACATCTCCTATCG 59.827 40.741 0.00 0.00 43.29 2.92
198 200 9.037737 GTATTATATGTGTAACTCGCCTTTTGA 57.962 33.333 0.00 0.00 38.04 2.69
221 223 8.034313 TGAGCCTTTGAGTAATATATTCAGGT 57.966 34.615 0.00 0.00 0.00 4.00
222 224 7.933577 TGAGCCTTTGAGTAATATATTCAGGTG 59.066 37.037 0.00 0.00 0.00 4.00
255 257 3.387699 ACCCCTTGGTGATTGTTCAAAAG 59.612 43.478 0.00 0.00 45.58 2.27
256 258 3.640967 CCCCTTGGTGATTGTTCAAAAGA 59.359 43.478 0.00 0.00 32.97 2.52
273 275 4.623932 AAAGAAAAAGGAAAGATGCCCC 57.376 40.909 0.00 0.00 0.00 5.80
274 276 3.258722 AGAAAAAGGAAAGATGCCCCA 57.741 42.857 0.00 0.00 0.00 4.96
295 297 4.080356 CCATTGATGAGTTCACTAGGGGAA 60.080 45.833 0.00 0.00 32.84 3.97
315 317 4.320275 GGAACGGAGTCAAAGATTTTGGTC 60.320 45.833 2.09 0.57 45.00 4.02
402 404 2.029828 GTGTAGGATGGGATAGCGACAG 60.030 54.545 0.00 0.00 0.00 3.51
462 464 9.754382 TTATTTCGTAGCTTACCGATTCTTATT 57.246 29.630 0.00 0.00 32.44 1.40
466 468 6.015688 TCGTAGCTTACCGATTCTTATTCCAT 60.016 38.462 0.00 0.00 0.00 3.41
497 499 1.532437 CGCTTGAAGCAGACATTCACA 59.468 47.619 18.22 0.00 42.58 3.58
536 538 5.133941 TGGTGTTGGTTCTGCAATACTTTA 58.866 37.500 0.00 0.00 0.00 1.85
543 545 6.399743 TGGTTCTGCAATACTTTACATCGTA 58.600 36.000 0.00 0.00 0.00 3.43
545 547 6.400422 GTTCTGCAATACTTTACATCGTACG 58.600 40.000 9.53 9.53 0.00 3.67
587 589 1.806542 GGCGACATTATATGGCACTGG 59.193 52.381 0.00 0.00 38.56 4.00
641 645 9.982291 GTTGCTAAGATTAAATCGTTGATGTTA 57.018 29.630 0.00 0.00 0.00 2.41
651 655 3.869065 TCGTTGATGTTAGATTGGGGTC 58.131 45.455 0.00 0.00 0.00 4.46
675 679 7.653713 GTCATTCCACATAAGATTAGACACGAT 59.346 37.037 0.00 0.00 0.00 3.73
700 704 8.684386 TCAAAATAAGGTAACAGATTGACACA 57.316 30.769 0.00 0.00 41.41 3.72
709 713 5.591643 AACAGATTGACACACGTTGTATC 57.408 39.130 3.83 5.05 39.17 2.24
710 714 4.627058 ACAGATTGACACACGTTGTATCA 58.373 39.130 12.20 5.99 39.17 2.15
713 717 6.871492 ACAGATTGACACACGTTGTATCATTA 59.129 34.615 12.20 0.00 33.38 1.90
736 745 6.727824 AAGTGTAGCATTGTTGTATGACTC 57.272 37.500 0.00 0.00 0.00 3.36
749 758 0.030297 ATGACTCCAGAGAGGGCCAT 60.030 55.000 6.18 0.00 45.11 4.40
750 759 0.252881 TGACTCCAGAGAGGGCCATT 60.253 55.000 6.18 0.00 45.11 3.16
764 773 5.901276 AGAGGGCCATTTTGTATTGATGAAT 59.099 36.000 6.18 0.00 0.00 2.57
776 785 9.958180 TTTGTATTGATGAATTTCTACCTCTCA 57.042 29.630 0.00 0.00 0.00 3.27
786 795 8.160765 TGAATTTCTACCTCTCAATTGTAACCA 58.839 33.333 5.13 0.00 0.00 3.67
894 1284 3.081993 GCTACAAAGCGGACGAGC 58.918 61.111 0.00 0.00 39.39 5.03
895 1285 2.453638 GCTACAAAGCGGACGAGCC 61.454 63.158 0.00 0.00 39.39 4.70
896 1286 1.080093 CTACAAAGCGGACGAGCCA 60.080 57.895 0.00 0.00 38.01 4.75
897 1287 0.669318 CTACAAAGCGGACGAGCCAA 60.669 55.000 0.00 0.00 38.01 4.52
898 1288 0.249953 TACAAAGCGGACGAGCCAAA 60.250 50.000 0.00 0.00 38.01 3.28
899 1289 1.207593 CAAAGCGGACGAGCCAAAG 59.792 57.895 0.00 0.00 38.01 2.77
900 1290 2.617274 AAAGCGGACGAGCCAAAGC 61.617 57.895 0.00 0.00 38.01 3.51
901 1291 3.825160 AAGCGGACGAGCCAAAGCA 62.825 57.895 0.00 0.00 43.56 3.91
942 1332 2.082140 AGGAAACCACAAAACCCCTC 57.918 50.000 0.00 0.00 0.00 4.30
943 1333 1.045407 GGAAACCACAAAACCCCTCC 58.955 55.000 0.00 0.00 0.00 4.30
944 1334 1.045407 GAAACCACAAAACCCCTCCC 58.955 55.000 0.00 0.00 0.00 4.30
945 1335 0.639943 AAACCACAAAACCCCTCCCT 59.360 50.000 0.00 0.00 0.00 4.20
1148 1547 3.160748 GGCCTCCCTGCTCTCCTC 61.161 72.222 0.00 0.00 0.00 3.71
1209 1608 1.749258 GCCTTTCGCGGGATTCCTT 60.749 57.895 6.13 0.00 0.00 3.36
1394 1793 5.321102 AGTGCTGGTACACATTCCATTTAA 58.679 37.500 0.00 0.00 43.23 1.52
1424 1823 0.240411 CTGTATCGCGGCTACCTACC 59.760 60.000 6.13 0.00 0.00 3.18
1459 1858 4.384056 AGCGTCATAGGAAATTCAGATGG 58.616 43.478 0.00 0.00 0.00 3.51
1538 1937 7.431376 CGAGCGTTACTCTGATATTTCTAAACA 59.569 37.037 0.00 0.00 43.85 2.83
1572 1971 7.955918 ACTCTTTAGGATGCAAATTTTTGACT 58.044 30.769 7.21 2.32 40.55 3.41
1573 1972 8.084684 ACTCTTTAGGATGCAAATTTTTGACTC 58.915 33.333 7.21 2.79 40.55 3.36
1574 1973 8.181904 TCTTTAGGATGCAAATTTTTGACTCT 57.818 30.769 7.21 1.85 40.55 3.24
1575 1974 9.295825 TCTTTAGGATGCAAATTTTTGACTCTA 57.704 29.630 7.21 1.06 40.55 2.43
1777 2319 3.242608 CGTTTCAAACTGGTCGTGATTGT 60.243 43.478 0.00 0.00 0.00 2.71
1792 2334 5.820423 TCGTGATTGTCATTTACCAATAGGG 59.180 40.000 0.00 0.00 44.81 3.53
1836 2378 6.949463 AGGGAGCTCTATTACTGGTAATCTAC 59.051 42.308 14.64 2.54 37.07 2.59
1887 2429 4.764172 AGTTCTGGGATGATTTTCTCTCG 58.236 43.478 0.00 0.00 0.00 4.04
1899 2441 7.394870 TGATTTTCTCTCGCGATAGTTTATG 57.605 36.000 19.44 1.43 39.35 1.90
1927 2469 6.358118 TCACGGTGATTTATTATGTTCAGC 57.642 37.500 6.76 0.00 34.22 4.26
1953 2495 1.208293 ACGTTTGCAATTGGTTGGGTT 59.792 42.857 7.72 0.00 35.83 4.11
2182 2724 5.241403 TCTTAACAAAGAATGGAGAGGCA 57.759 39.130 0.00 0.00 0.00 4.75
2253 2795 3.446161 TGGATGTTCCTACTGTAAGACCG 59.554 47.826 0.00 0.00 37.46 4.79
2449 2993 5.413523 GTGGTATGATCCTTTACGGTTGTTT 59.586 40.000 0.00 0.00 0.00 2.83
2450 2994 6.594937 GTGGTATGATCCTTTACGGTTGTTTA 59.405 38.462 0.00 0.00 0.00 2.01
2451 2995 6.594937 TGGTATGATCCTTTACGGTTGTTTAC 59.405 38.462 0.00 0.00 0.00 2.01
2452 2996 5.789710 ATGATCCTTTACGGTTGTTTACG 57.210 39.130 0.00 0.00 0.00 3.18
2453 2997 4.880759 TGATCCTTTACGGTTGTTTACGA 58.119 39.130 0.00 0.00 0.00 3.43
2454 2998 4.685628 TGATCCTTTACGGTTGTTTACGAC 59.314 41.667 0.00 0.00 0.00 4.34
2455 2999 4.320608 TCCTTTACGGTTGTTTACGACT 57.679 40.909 0.00 0.00 0.00 4.18
2456 3000 5.446143 TCCTTTACGGTTGTTTACGACTA 57.554 39.130 0.00 0.00 0.00 2.59
2511 3057 4.323336 GTGGTTTATGTTAATTGCTGCACG 59.677 41.667 0.00 0.00 0.00 5.34
2512 3058 3.857093 GGTTTATGTTAATTGCTGCACGG 59.143 43.478 0.00 0.00 0.00 4.94
2513 3059 3.773860 TTATGTTAATTGCTGCACGGG 57.226 42.857 0.00 0.00 0.00 5.28
2516 3062 1.472082 TGTTAATTGCTGCACGGGATG 59.528 47.619 0.00 0.00 0.00 3.51
2549 3095 6.949578 ACGCACAAAATGATTATTTCCTTG 57.050 33.333 0.00 0.00 35.50 3.61
2713 3259 3.272574 CTCCTGATTTGAGCAAGCCTA 57.727 47.619 0.00 0.00 0.00 3.93
2727 3273 5.070001 AGCAAGCCTAACACAGAAACATTA 58.930 37.500 0.00 0.00 0.00 1.90
2771 3317 5.273208 TCTCTGTAATTACTCTCCTTGCCT 58.727 41.667 16.33 0.00 0.00 4.75
2806 3352 8.276252 TGAAATGCATATCACTCATATGATGG 57.724 34.615 5.72 1.66 45.33 3.51
2948 3494 3.496870 GGTACATCCCTTATCCCTTGCTG 60.497 52.174 0.00 0.00 0.00 4.41
2957 3503 0.610232 ATCCCTTGCTGGTTGCTCAC 60.610 55.000 0.00 0.00 43.37 3.51
3101 3647 2.632763 AGGAAGCTAGGTCAAGAGGT 57.367 50.000 0.00 0.00 0.00 3.85
3135 3681 7.179269 AGTTATTGCCACAGGAAAGGTATTAA 58.821 34.615 0.00 0.00 0.00 1.40
3136 3682 7.339466 AGTTATTGCCACAGGAAAGGTATTAAG 59.661 37.037 0.00 0.00 0.00 1.85
3184 3731 9.658799 CAATGACTAATTGTTCCTAGAAGAGAA 57.341 33.333 0.00 0.00 40.78 2.87
3210 3757 9.939424 AATAGTATTATATACTCCCTCAGTCCC 57.061 37.037 2.79 0.00 36.43 4.46
3212 3759 7.956357 AGTATTATATACTCCCTCAGTCCCAT 58.044 38.462 0.00 0.00 36.43 4.00
3225 3772 6.014499 CCCTCAGTCCCATAATATAAGACGTT 60.014 42.308 0.00 0.00 32.70 3.99
3226 3773 7.442656 CCTCAGTCCCATAATATAAGACGTTT 58.557 38.462 0.00 0.00 32.70 3.60
3229 3776 9.104965 TCAGTCCCATAATATAAGACGTTTTTG 57.895 33.333 0.00 0.00 32.70 2.44
3230 3777 7.855904 CAGTCCCATAATATAAGACGTTTTTGC 59.144 37.037 0.00 0.00 32.70 3.68
3231 3778 7.554835 AGTCCCATAATATAAGACGTTTTTGCA 59.445 33.333 0.00 0.00 32.70 4.08
3233 3780 8.402472 TCCCATAATATAAGACGTTTTTGCAAG 58.598 33.333 0.00 0.00 0.00 4.01
3235 3782 7.915397 CCATAATATAAGACGTTTTTGCAAGCT 59.085 33.333 0.00 0.00 0.00 3.74
3238 3785 8.841444 AATATAAGACGTTTTTGCAAGCTATG 57.159 30.769 0.00 0.00 0.00 2.23
3241 3788 5.682943 AGACGTTTTTGCAAGCTATGTTA 57.317 34.783 0.00 0.00 0.00 2.41
3256 3803 5.975138 CTATGTTAGCTTGCAAAAACGTC 57.025 39.130 13.85 0.43 0.00 4.34
3257 3804 4.568152 ATGTTAGCTTGCAAAAACGTCT 57.432 36.364 0.00 0.00 0.00 4.18
3258 3805 4.364415 TGTTAGCTTGCAAAAACGTCTT 57.636 36.364 0.00 0.00 0.00 3.01
3259 3806 5.487153 TGTTAGCTTGCAAAAACGTCTTA 57.513 34.783 0.00 0.00 0.00 2.10
3261 3808 7.192148 TGTTAGCTTGCAAAAACGTCTTATA 57.808 32.000 0.00 0.00 0.00 0.98
3262 3809 7.812648 TGTTAGCTTGCAAAAACGTCTTATAT 58.187 30.769 0.00 0.00 0.00 0.86
3264 3811 9.763465 GTTAGCTTGCAAAAACGTCTTATATTA 57.237 29.630 0.00 0.00 0.00 0.98
3266 3813 8.841444 AGCTTGCAAAAACGTCTTATATTATG 57.159 30.769 0.00 0.00 0.00 1.90
3267 3814 7.915397 AGCTTGCAAAAACGTCTTATATTATGG 59.085 33.333 0.00 0.00 0.00 2.74
3276 3824 4.142227 CGTCTTATATTATGGGACGGAGGG 60.142 50.000 17.59 0.46 43.69 4.30
3290 3838 2.169978 ACGGAGGGAGTACCATTTAAGC 59.830 50.000 0.00 0.00 43.89 3.09
3293 3841 3.053917 GGAGGGAGTACCATTTAAGCCAA 60.054 47.826 0.00 0.00 43.89 4.52
3446 3994 8.230486 CAGAAATGTACCAGTGATGAAGTTTAC 58.770 37.037 0.00 0.00 0.00 2.01
3476 4024 8.143835 CCCACTAAATCTTTCAGTCAAATGTTT 58.856 33.333 0.00 0.00 0.00 2.83
3477 4025 9.185192 CCACTAAATCTTTCAGTCAAATGTTTC 57.815 33.333 0.00 0.00 0.00 2.78
3478 4026 9.734620 CACTAAATCTTTCAGTCAAATGTTTCA 57.265 29.630 0.00 0.00 0.00 2.69
3500 4048 4.996758 CACCCTTGTTTCAAATCCCATTTC 59.003 41.667 0.00 0.00 0.00 2.17
3502 4050 5.221702 ACCCTTGTTTCAAATCCCATTTCAG 60.222 40.000 0.00 0.00 0.00 3.02
3503 4051 4.692155 CCTTGTTTCAAATCCCATTTCAGC 59.308 41.667 0.00 0.00 0.00 4.26
3504 4052 4.952071 TGTTTCAAATCCCATTTCAGCA 57.048 36.364 0.00 0.00 0.00 4.41
3505 4053 5.486735 TGTTTCAAATCCCATTTCAGCAT 57.513 34.783 0.00 0.00 0.00 3.79
3506 4054 5.867330 TGTTTCAAATCCCATTTCAGCATT 58.133 33.333 0.00 0.00 0.00 3.56
3507 4055 6.297582 TGTTTCAAATCCCATTTCAGCATTT 58.702 32.000 0.00 0.00 0.00 2.32
3523 4077 8.436046 TTCAGCATTTTTGTTTTGATAAGCTT 57.564 26.923 3.48 3.48 0.00 3.74
3659 4245 2.821307 GCTTGAAAGAAGCTCATCGG 57.179 50.000 0.00 0.00 40.01 4.18
3718 4304 2.497675 CACTGTACTGTATCAGGCAGGT 59.502 50.000 19.10 8.94 40.28 4.00
3719 4305 2.761208 ACTGTACTGTATCAGGCAGGTC 59.239 50.000 19.10 0.00 40.28 3.85
3725 4311 3.264193 ACTGTATCAGGCAGGTCATTGAA 59.736 43.478 1.90 0.00 38.22 2.69
3806 4392 0.678048 GCCTCTTCCCCATGACACAC 60.678 60.000 0.00 0.00 0.00 3.82
3895 4488 3.249189 TCTCAGGGCCCGCTGTTT 61.249 61.111 18.44 0.00 0.00 2.83
3900 4493 4.660938 GGGCCCGCTGTTTCCACT 62.661 66.667 5.69 0.00 0.00 4.00
3901 4494 3.365265 GGCCCGCTGTTTCCACTG 61.365 66.667 0.00 0.00 0.00 3.66
3902 4495 3.365265 GCCCGCTGTTTCCACTGG 61.365 66.667 0.00 0.00 0.00 4.00
3982 4575 0.407139 AAAAGCTGCCCATCTGGACT 59.593 50.000 0.00 0.00 37.39 3.85
4046 4658 6.817765 TCTGTGGTCTTGAATGGAATTAAC 57.182 37.500 0.00 0.00 36.07 2.01
4061 4673 4.695928 GGAATTAACGGAGCTCAGAAGTTT 59.304 41.667 21.22 6.76 0.00 2.66
4076 4688 7.095017 GCTCAGAAGTTTGCTCTTATGTTACTT 60.095 37.037 9.74 0.00 37.72 2.24
4331 4943 1.197492 CGCAGTAGTGAAAATGCAGCA 59.803 47.619 0.00 0.00 38.60 4.41
4346 4958 3.538591 TGCAGCATCTTTACTCATCCTG 58.461 45.455 0.00 0.00 0.00 3.86
4423 5319 7.992608 AGGTGCATATTTGTATGTTCTCATGTA 59.007 33.333 0.00 0.00 35.70 2.29
4444 5340 9.264719 CATGTATGTTCTGTAGAATGCATTCTA 57.735 33.333 34.91 34.91 44.80 2.10
4508 5405 8.902040 CTTGGAATAAAGCATACTTGAAGTTC 57.098 34.615 1.97 0.00 35.85 3.01
4533 5436 9.174166 TCCTTTAAAAACATATTCTGCTACTCC 57.826 33.333 0.00 0.00 0.00 3.85
4534 5437 8.956426 CCTTTAAAAACATATTCTGCTACTCCA 58.044 33.333 0.00 0.00 0.00 3.86
4577 5480 5.471456 GGTCTAGATCAATGGTGGCAATTAG 59.529 44.000 0.00 0.00 0.00 1.73
4584 5487 6.509418 TCAATGGTGGCAATTAGAACTTAC 57.491 37.500 0.00 0.00 0.00 2.34
4585 5488 6.007076 TCAATGGTGGCAATTAGAACTTACA 58.993 36.000 0.00 0.00 0.00 2.41
4595 5498 8.736244 GGCAATTAGAACTTACACCTTCAATAA 58.264 33.333 0.00 0.00 0.00 1.40
4605 5510 9.816787 ACTTACACCTTCAATAATAAAAAGGGA 57.183 29.630 5.11 0.00 42.12 4.20
4674 5579 4.834496 TGAGGCCTGTGAAATTTTGAGATT 59.166 37.500 12.00 0.00 0.00 2.40
4714 5620 1.227118 GCTTCTGGCTAGACCTCGC 60.227 63.158 0.00 0.00 40.22 5.03
4732 5638 1.560860 GCGCAGTGGTCAACAGAGAC 61.561 60.000 0.30 0.00 37.80 3.36
4770 5677 7.559486 TGGATGATGTGTATGGATATAAGCTC 58.441 38.462 0.00 0.00 0.00 4.09
4792 5699 6.345882 GCTCGAGTCTTTAGTGTTTGTTAGTG 60.346 42.308 15.13 0.00 0.00 2.74
4812 5719 9.099454 GTTAGTGAAGTCAAAATACCCATCTAG 57.901 37.037 0.00 0.00 0.00 2.43
4847 5754 3.019564 GACATAACCAGCCAGCAAAGAT 58.980 45.455 0.00 0.00 0.00 2.40
4906 5994 1.922545 GTACCGCTTATGGTGTCGAAC 59.077 52.381 0.00 0.00 43.68 3.95
4914 6002 2.930826 ATGGTGTCGAACTTGGTTCT 57.069 45.000 8.46 0.00 40.05 3.01
4935 6023 6.266131 TCTGAATAGGCCAACCATTCTTAT 57.734 37.500 5.01 0.00 39.06 1.73
4938 6026 6.299141 TGAATAGGCCAACCATTCTTATCTC 58.701 40.000 5.01 0.00 39.06 2.75
4943 6031 3.372025 GCCAACCATTCTTATCTCCCTGT 60.372 47.826 0.00 0.00 0.00 4.00
4962 6050 4.037923 CCTGTGTTCAAAAACTGGCTATGT 59.962 41.667 0.00 0.00 36.30 2.29
4973 6061 5.950544 AACTGGCTATGTATGTGTTCCTA 57.049 39.130 0.00 0.00 0.00 2.94
5006 6094 2.107366 TGCTGTCGATATCCCTGTTGA 58.893 47.619 0.00 0.00 0.00 3.18
5055 6143 4.380841 AGCTTGCACAAATATGACCATG 57.619 40.909 0.00 0.00 0.00 3.66
5067 6155 7.123098 ACAAATATGACCATGAAAAGCTGATGA 59.877 33.333 0.00 0.00 0.00 2.92
5069 6157 2.743664 TGACCATGAAAAGCTGATGACG 59.256 45.455 0.00 0.00 0.00 4.35
5128 6216 8.982091 ACTCACTTCTGTAATATGCTAGTCTA 57.018 34.615 0.00 0.00 0.00 2.59
5169 6260 6.847792 CACATGCTGTATATTAAAGCGAGTTG 59.152 38.462 0.00 0.00 39.88 3.16
5175 6266 7.794349 GCTGTATATTAAAGCGAGTTGTGATTC 59.206 37.037 0.00 0.00 0.00 2.52
5180 6271 7.801547 ATTAAAGCGAGTTGTGATTCATTTG 57.198 32.000 0.00 0.00 0.00 2.32
5217 6332 9.765795 AGTTAGGATTGTTCTATTGTAGTATGC 57.234 33.333 0.00 0.00 0.00 3.14
5225 6340 8.479313 TGTTCTATTGTAGTATGCTGTTTCAG 57.521 34.615 0.00 0.00 34.12 3.02
5290 6405 1.934589 TATTCCCATGAGCGTTGTCG 58.065 50.000 0.00 0.00 40.37 4.35
5306 6421 6.008364 CGTTGTCGCCATTTTCATAAATTC 57.992 37.500 0.00 0.00 31.63 2.17
5307 6422 5.275234 CGTTGTCGCCATTTTCATAAATTCG 60.275 40.000 0.00 0.00 31.63 3.34
5344 6459 2.630580 GGGCTGTTGGTTTATGGTTTGA 59.369 45.455 0.00 0.00 0.00 2.69
5429 6544 5.768164 ACTTGTGTTTTACTATGGTTGGAGG 59.232 40.000 0.00 0.00 0.00 4.30
5447 6562 0.538977 GGTCATCCATGCCCATCTGG 60.539 60.000 0.00 0.00 37.09 3.86
5451 6566 2.158623 TCATCCATGCCCATCTGGTAAC 60.159 50.000 0.00 0.00 36.04 2.50
5463 6578 4.227197 CATCTGGTAACTATCTCCCCAGT 58.773 47.826 0.00 0.00 42.63 4.00
5468 6583 7.598248 TCTGGTAACTATCTCCCCAGTAAATA 58.402 38.462 0.00 0.00 42.63 1.40
5480 6595 7.844779 TCTCCCCAGTAAATACTTCTACATCTT 59.155 37.037 0.00 0.00 33.46 2.40
5541 6661 8.896744 CATTCTTATATTCTTTGGAGCACAAGA 58.103 33.333 0.00 0.00 40.82 3.02
5586 6706 6.086222 CAGGATCGGTGTTTTTCTATGTTTG 58.914 40.000 0.00 0.00 0.00 2.93
5589 6709 5.103290 TCGGTGTTTTTCTATGTTTGAGC 57.897 39.130 0.00 0.00 0.00 4.26
5591 6711 5.240623 TCGGTGTTTTTCTATGTTTGAGCAT 59.759 36.000 0.00 0.00 0.00 3.79
5615 6735 5.103813 TCCATTGGTTGATTCTCTCCATGAT 60.104 40.000 1.86 0.00 0.00 2.45
5618 6738 4.520179 TGGTTGATTCTCTCCATGATGTG 58.480 43.478 0.00 0.00 0.00 3.21
5644 6764 4.507335 CCATGAACCTAAGGTATGATGGGG 60.507 50.000 0.00 0.00 34.68 4.96
5648 6768 5.732170 TGAACCTAAGGTATGATGGGGTTTA 59.268 40.000 0.00 0.00 35.99 2.01
5649 6769 5.641789 ACCTAAGGTATGATGGGGTTTAC 57.358 43.478 0.00 0.00 32.11 2.01
5650 6770 5.294473 ACCTAAGGTATGATGGGGTTTACT 58.706 41.667 0.00 0.00 32.11 2.24
5653 6773 7.575129 ACCTAAGGTATGATGGGGTTTACTTAT 59.425 37.037 0.00 0.00 32.11 1.73
5654 6774 8.101419 CCTAAGGTATGATGGGGTTTACTTATC 58.899 40.741 0.00 0.00 0.00 1.75
5656 6776 5.914716 AGGTATGATGGGGTTTACTTATCCA 59.085 40.000 0.00 0.00 0.00 3.41
5657 6777 6.566480 AGGTATGATGGGGTTTACTTATCCAT 59.434 38.462 0.00 0.00 40.52 3.41
5659 6779 7.393515 GGTATGATGGGGTTTACTTATCCATTC 59.606 40.741 0.00 0.00 38.23 2.67
5660 6780 6.590656 TGATGGGGTTTACTTATCCATTCT 57.409 37.500 0.00 0.00 38.23 2.40
5685 6805 9.492973 CTTTTGTGAATCCCAAATGTTTCTATT 57.507 29.630 0.00 0.00 32.28 1.73
5687 6807 8.421249 TTGTGAATCCCAAATGTTTCTATTCT 57.579 30.769 0.00 0.00 0.00 2.40
5740 6860 7.660617 CAGGCTGAAATAGTGTCATCTATTGAT 59.339 37.037 9.42 0.00 39.58 2.57
5788 6908 6.970484 ACAGGTGCTGTACTTATTTTCAAAG 58.030 36.000 0.00 0.00 43.46 2.77
5793 6913 8.244113 GGTGCTGTACTTATTTTCAAAGCTATT 58.756 33.333 0.00 0.00 0.00 1.73
5838 6958 8.702819 TCTGAGATCAGTTCTGTATGAATCATT 58.297 33.333 0.00 0.00 44.12 2.57
5866 6987 7.746703 ACTAGTTCCTTCACTTCAAACCTTAT 58.253 34.615 0.00 0.00 0.00 1.73
5885 7006 8.492415 ACCTTATAGCATAAGGATTAGTGACA 57.508 34.615 27.58 0.00 45.24 3.58
5943 7064 1.557371 TGAATAAGTCCATGTGGCCGA 59.443 47.619 0.00 0.00 34.44 5.54
5962 7087 5.355910 GGCCGACCAAAGATTTAATAGTTCA 59.644 40.000 0.00 0.00 35.26 3.18
6118 7285 6.276091 AGAAAAGATTTGGCAGTTTGAGAAC 58.724 36.000 0.00 0.00 35.97 3.01
6147 7315 6.696411 AGATCTGTTATAGCTTGACTATGCC 58.304 40.000 0.00 0.00 41.83 4.40
6230 7398 3.264574 GCCATACTGGACAAAGGCA 57.735 52.632 0.00 0.00 40.96 4.75
6234 7402 3.316308 GCCATACTGGACAAAGGCAATAG 59.684 47.826 0.00 0.00 40.96 1.73
6254 7422 2.175715 AGAAGAAAGGGCTGGTGTTCTT 59.824 45.455 0.00 0.00 41.74 2.52
6335 7503 4.012374 TGAAGATTTTGCTGGACCATCTC 58.988 43.478 0.00 0.00 0.00 2.75
6344 7512 2.158842 GCTGGACCATCTCTGCATTAGT 60.159 50.000 0.00 0.00 0.00 2.24
6367 7535 3.879295 CCGGACGAGGTATAAGTTGTCTA 59.121 47.826 0.00 0.00 0.00 2.59
6376 7544 6.269974 AGGTATAAGTTGTCTAAGTTCCCCT 58.730 40.000 0.00 0.00 32.00 4.79
6377 7545 7.425003 AGGTATAAGTTGTCTAAGTTCCCCTA 58.575 38.462 0.00 0.00 32.00 3.53
6398 7566 2.592102 ACATCTTCCATGGTGCAAGT 57.408 45.000 12.58 3.89 0.00 3.16
6426 7594 4.225208 GTTGCTGCATTTTCTTCTCTCAC 58.775 43.478 1.84 0.00 0.00 3.51
6429 7597 4.214971 TGCTGCATTTTCTTCTCTCACTTC 59.785 41.667 0.00 0.00 0.00 3.01
6447 7615 8.307483 TCTCACTTCCTTCAGTTACAAATCTAG 58.693 37.037 0.00 0.00 0.00 2.43
6481 7649 9.435688 AATTTCCTTTGTTCTAAATAACATGGC 57.564 29.630 0.00 0.00 39.04 4.40
6482 7650 6.524101 TCCTTTGTTCTAAATAACATGGCC 57.476 37.500 0.00 0.00 39.04 5.36
6483 7651 6.013379 TCCTTTGTTCTAAATAACATGGCCA 58.987 36.000 8.56 8.56 39.04 5.36
6484 7652 6.495181 TCCTTTGTTCTAAATAACATGGCCAA 59.505 34.615 10.96 0.00 39.04 4.52
6485 7653 7.015682 TCCTTTGTTCTAAATAACATGGCCAAA 59.984 33.333 10.96 0.00 39.04 3.28
6486 7654 7.659390 CCTTTGTTCTAAATAACATGGCCAAAA 59.341 33.333 10.96 0.00 39.04 2.44
6544 7716 4.379499 GCTTCCGTTGAATCCTCGAAATTT 60.379 41.667 0.00 0.00 0.00 1.82
6548 7720 7.204496 TCCGTTGAATCCTCGAAATTTTAAA 57.796 32.000 0.00 0.00 0.00 1.52
6549 7721 7.649973 TCCGTTGAATCCTCGAAATTTTAAAA 58.350 30.769 2.51 2.51 0.00 1.52
6560 7732 7.589587 CCTCGAAATTTTAAAATTTGTTTGGCC 59.410 33.333 32.99 19.86 45.70 5.36
6561 7733 7.126398 TCGAAATTTTAAAATTTGTTTGGCCG 58.874 30.769 32.99 27.09 45.70 6.13
6573 7745 0.745128 TTTGGCCGCCAATACTACCG 60.745 55.000 25.37 0.00 43.55 4.02
6575 7747 2.502577 GCCGCCAATACTACCGGT 59.497 61.111 13.98 13.98 42.54 5.28
6576 7748 1.741525 GCCGCCAATACTACCGGTA 59.258 57.895 14.95 14.95 42.54 4.02
6788 7960 2.297880 TGACTACGCTTTCTAACAGCCA 59.702 45.455 0.00 0.00 33.29 4.75
7010 8182 8.333235 TCCACTGGGAAATATTTGTAGTTGTAT 58.667 33.333 5.17 0.00 41.32 2.29
7067 8244 3.858247 ACAACTTTAGTACTGGATCGGC 58.142 45.455 5.39 0.00 0.00 5.54
7185 8363 0.774276 TGGTCAAAGGCCATGTACCA 59.226 50.000 19.45 19.45 34.73 3.25
7266 8446 3.881937 ACCGGTCTCTATTTACACACC 57.118 47.619 0.00 0.00 0.00 4.16
7280 8463 3.492421 ACACACCGAATCAATCAATGC 57.508 42.857 0.00 0.00 0.00 3.56
7282 8465 2.424601 CACACCGAATCAATCAATGCCT 59.575 45.455 0.00 0.00 0.00 4.75
7321 8504 5.541868 TCTTCCTGAAGAACATGAGAGAAGT 59.458 40.000 7.12 0.00 43.79 3.01
7346 8529 7.817418 AAAAGCCTCTTAGTACATTTGACAA 57.183 32.000 0.00 0.00 0.00 3.18
7600 8796 1.228245 GCAAGCTGTCTGGTTCCCA 60.228 57.895 0.00 0.00 33.63 4.37
7603 8799 1.004044 CAAGCTGTCTGGTTCCCATCT 59.996 52.381 0.00 0.00 33.63 2.90
7645 13240 2.168521 CGGCTTGATCTTCTTGTAGGGA 59.831 50.000 0.00 0.00 0.00 4.20
7708 13303 2.087009 CGCGAACGACTGGGACTTC 61.087 63.158 0.00 0.00 43.93 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.644347 TCCTGGAGTCTCAAAGCTTTTATAG 58.356 40.000 9.53 7.73 0.00 1.31
1 2 6.620877 TCCTGGAGTCTCAAAGCTTTTATA 57.379 37.500 9.53 0.00 0.00 0.98
2 3 5.505181 TCCTGGAGTCTCAAAGCTTTTAT 57.495 39.130 9.53 0.00 0.00 1.40
3 4 4.974645 TCCTGGAGTCTCAAAGCTTTTA 57.025 40.909 9.53 0.00 0.00 1.52
4 5 3.864789 TCCTGGAGTCTCAAAGCTTTT 57.135 42.857 9.53 0.00 0.00 2.27
5 6 3.864789 TTCCTGGAGTCTCAAAGCTTT 57.135 42.857 5.69 5.69 0.00 3.51
14 15 2.494073 GACACGAGAATTCCTGGAGTCT 59.506 50.000 10.75 10.75 37.89 3.24
49 50 0.674534 GGTATCTAGGGGCGAGTGTG 59.325 60.000 0.00 0.00 0.00 3.82
56 57 3.945640 TTTTGAAGGGTATCTAGGGGC 57.054 47.619 0.00 0.00 0.00 5.80
77 78 6.202954 CCAAAGAGTGAAGTCTAAAACGATGT 59.797 38.462 0.00 0.00 0.00 3.06
86 87 5.130477 ACAAAGGTCCAAAGAGTGAAGTCTA 59.870 40.000 0.00 0.00 0.00 2.59
87 88 4.080299 ACAAAGGTCCAAAGAGTGAAGTCT 60.080 41.667 0.00 0.00 0.00 3.24
103 104 8.168058 ACTTACATGGTCCTTAAATACAAAGGT 58.832 33.333 0.00 0.00 43.42 3.50
109 110 9.490379 CTCCATACTTACATGGTCCTTAAATAC 57.510 37.037 0.00 0.00 44.98 1.89
110 111 8.656806 CCTCCATACTTACATGGTCCTTAAATA 58.343 37.037 0.00 0.00 44.98 1.40
166 167 7.701078 GGCGAGTTACACATATAATACATCGAT 59.299 37.037 0.00 0.00 0.00 3.59
169 170 8.758633 AAGGCGAGTTACACATATAATACATC 57.241 34.615 0.00 0.00 0.00 3.06
175 176 6.036735 GCTCAAAAGGCGAGTTACACATATAA 59.963 38.462 0.00 0.00 32.83 0.98
177 178 4.332819 GCTCAAAAGGCGAGTTACACATAT 59.667 41.667 0.00 0.00 32.83 1.78
198 200 7.227156 CCACCTGAATATATTACTCAAAGGCT 58.773 38.462 0.00 0.00 0.00 4.58
233 235 6.341127 TTCTTTTGAACAATCACCAAGGGGT 61.341 40.000 0.00 0.00 40.06 4.95
238 240 7.390027 TCCTTTTTCTTTTGAACAATCACCAA 58.610 30.769 0.00 0.00 38.30 3.67
255 257 4.020307 TCAATGGGGCATCTTTCCTTTTTC 60.020 41.667 0.00 0.00 0.00 2.29
256 258 3.909364 TCAATGGGGCATCTTTCCTTTTT 59.091 39.130 0.00 0.00 0.00 1.94
273 275 4.760530 TCCCCTAGTGAACTCATCAATG 57.239 45.455 0.00 0.00 40.50 2.82
274 276 4.383118 CGTTCCCCTAGTGAACTCATCAAT 60.383 45.833 16.08 0.00 40.50 2.57
295 297 3.146847 GGACCAAAATCTTTGACTCCGT 58.853 45.455 0.69 0.00 0.00 4.69
339 341 8.519526 CATTGACAAGGCAACCTAGTTTATTAA 58.480 33.333 0.00 0.00 31.13 1.40
344 346 3.573967 CCATTGACAAGGCAACCTAGTTT 59.426 43.478 0.00 0.00 31.13 2.66
374 376 1.887797 TCCCATCCTACACGGGAAAT 58.112 50.000 0.00 0.00 46.20 2.17
416 418 9.148104 GAAATAATACTACAGTCGTGTTTCCTT 57.852 33.333 0.00 0.00 38.19 3.36
421 423 7.430502 GCTACGAAATAATACTACAGTCGTGTT 59.569 37.037 6.10 0.00 40.19 3.32
466 468 1.327460 GCTTCAAGCGCATCATTACGA 59.673 47.619 11.47 0.00 0.00 3.43
487 489 4.082408 CCTTGCATCAATGTGTGAATGTCT 60.082 41.667 0.00 0.00 40.50 3.41
536 538 3.005050 TGAAGAGTTTGACCGTACGATGT 59.995 43.478 18.76 6.89 0.00 3.06
543 545 1.947456 GCCTTTGAAGAGTTTGACCGT 59.053 47.619 0.00 0.00 0.00 4.83
545 547 4.363138 CAAAGCCTTTGAAGAGTTTGACC 58.637 43.478 11.83 0.00 43.26 4.02
587 589 3.438297 TCATAGGTTGAGCGAGCTAAC 57.562 47.619 0.00 3.64 33.76 2.34
641 645 4.478317 TCTTATGTGGAATGACCCCAATCT 59.522 41.667 0.00 0.00 38.00 2.40
644 648 4.879295 ATCTTATGTGGAATGACCCCAA 57.121 40.909 0.00 0.00 38.00 4.12
651 655 7.653311 TGATCGTGTCTAATCTTATGTGGAATG 59.347 37.037 0.00 0.00 0.00 2.67
675 679 8.564574 GTGTGTCAATCTGTTACCTTATTTTGA 58.435 33.333 0.00 0.00 0.00 2.69
683 687 3.746045 ACGTGTGTCAATCTGTTACCT 57.254 42.857 0.00 0.00 0.00 3.08
700 704 7.333423 ACAATGCTACACTTAATGATACAACGT 59.667 33.333 0.00 0.00 0.00 3.99
709 713 8.668353 AGTCATACAACAATGCTACACTTAATG 58.332 33.333 0.00 0.00 0.00 1.90
710 714 8.792830 AGTCATACAACAATGCTACACTTAAT 57.207 30.769 0.00 0.00 0.00 1.40
713 717 5.643777 GGAGTCATACAACAATGCTACACTT 59.356 40.000 0.00 0.00 0.00 3.16
736 745 2.806945 TACAAAATGGCCCTCTCTGG 57.193 50.000 0.00 0.00 0.00 3.86
750 759 9.958180 TGAGAGGTAGAAATTCATCAATACAAA 57.042 29.630 0.00 0.00 0.00 2.83
793 802 7.173047 GTGTGGCAAAAATGAGTTTATTCCAAT 59.827 33.333 0.00 0.00 0.00 3.16
797 806 7.475771 TTGTGTGGCAAAAATGAGTTTATTC 57.524 32.000 0.00 0.00 33.53 1.75
826 837 3.706086 AGTTTGTGCCTTTGTGGAAGATT 59.294 39.130 0.00 0.00 37.57 2.40
891 1281 0.038801 GTTTGGCTCTGCTTTGGCTC 60.039 55.000 0.00 0.00 39.59 4.70
892 1282 0.468771 AGTTTGGCTCTGCTTTGGCT 60.469 50.000 0.00 0.00 39.59 4.75
893 1283 1.247567 TAGTTTGGCTCTGCTTTGGC 58.752 50.000 0.00 0.00 39.26 4.52
894 1284 4.051237 GTTTTAGTTTGGCTCTGCTTTGG 58.949 43.478 0.00 0.00 0.00 3.28
895 1285 4.051237 GGTTTTAGTTTGGCTCTGCTTTG 58.949 43.478 0.00 0.00 0.00 2.77
896 1286 3.704061 TGGTTTTAGTTTGGCTCTGCTTT 59.296 39.130 0.00 0.00 0.00 3.51
897 1287 3.295973 TGGTTTTAGTTTGGCTCTGCTT 58.704 40.909 0.00 0.00 0.00 3.91
898 1288 2.944129 TGGTTTTAGTTTGGCTCTGCT 58.056 42.857 0.00 0.00 0.00 4.24
899 1289 3.726291 TTGGTTTTAGTTTGGCTCTGC 57.274 42.857 0.00 0.00 0.00 4.26
900 1290 5.514274 TCTTTGGTTTTAGTTTGGCTCTG 57.486 39.130 0.00 0.00 0.00 3.35
901 1291 5.069119 CCTTCTTTGGTTTTAGTTTGGCTCT 59.931 40.000 0.00 0.00 0.00 4.09
1209 1608 1.813753 GAAGCCGCGTATGCCAGAA 60.814 57.895 4.92 0.00 38.08 3.02
1394 1793 2.223829 CCGCGATACAGAGAGGTTTGAT 60.224 50.000 8.23 0.00 0.00 2.57
1459 1858 7.171337 ACACAATACAACTTTTGCCATCATTTC 59.829 33.333 0.00 0.00 0.00 2.17
1513 1912 8.630278 TGTTTAGAAATATCAGAGTAACGCTC 57.370 34.615 0.00 0.00 44.45 5.03
1553 1952 8.514594 CACTTAGAGTCAAAAATTTGCATCCTA 58.485 33.333 0.98 0.00 38.05 2.94
1554 1953 7.014615 ACACTTAGAGTCAAAAATTTGCATCCT 59.985 33.333 0.98 0.00 38.05 3.24
1567 1966 4.280174 GTCACAGGGTACACTTAGAGTCAA 59.720 45.833 0.00 0.00 0.00 3.18
1570 1969 3.163467 GGTCACAGGGTACACTTAGAGT 58.837 50.000 0.00 0.00 0.00 3.24
1572 1971 2.111255 AGGGTCACAGGGTACACTTAGA 59.889 50.000 0.00 0.00 0.00 2.10
1573 1972 2.496470 GAGGGTCACAGGGTACACTTAG 59.504 54.545 0.00 0.00 26.73 2.18
1574 1973 2.532843 GAGGGTCACAGGGTACACTTA 58.467 52.381 0.00 0.00 26.73 2.24
1575 1974 1.349067 GAGGGTCACAGGGTACACTT 58.651 55.000 0.00 0.00 26.73 3.16
1777 2319 5.163237 GGTGCTACTCCCTATTGGTAAATGA 60.163 44.000 0.00 0.00 34.77 2.57
1887 2429 3.050619 CGTGAGGGACATAAACTATCGC 58.949 50.000 0.00 0.00 0.00 4.58
1927 2469 2.808244 ACCAATTGCAAACGTGAACAG 58.192 42.857 1.71 0.00 0.00 3.16
1953 2495 8.062065 AGGAAAACAAAGATCAACAAACACTA 57.938 30.769 0.00 0.00 0.00 2.74
2100 2642 3.689649 CCTCAACCTTTTCATACTTCCCG 59.310 47.826 0.00 0.00 0.00 5.14
2182 2724 2.546795 GCATATCAGTAGCGCAGTCCTT 60.547 50.000 11.47 0.00 0.00 3.36
2358 2902 1.283793 CCTTGCAGCTGTTTCCACG 59.716 57.895 16.64 2.11 0.00 4.94
2394 2938 3.629398 GCAGTTCATCAAGAAGGGTATGG 59.371 47.826 0.00 0.00 36.78 2.74
2449 2993 0.179468 GGCAGGGGCAATTAGTCGTA 59.821 55.000 0.00 0.00 43.71 3.43
2450 2994 1.077716 GGCAGGGGCAATTAGTCGT 60.078 57.895 0.00 0.00 43.71 4.34
2451 2995 1.823899 GGGCAGGGGCAATTAGTCG 60.824 63.158 0.00 0.00 43.71 4.18
2452 2996 1.455773 GGGGCAGGGGCAATTAGTC 60.456 63.158 0.00 0.00 43.71 2.59
2453 2997 2.689813 GGGGCAGGGGCAATTAGT 59.310 61.111 0.00 0.00 43.71 2.24
2454 2998 2.123295 GGGGGCAGGGGCAATTAG 60.123 66.667 0.00 0.00 43.71 1.73
2511 3057 8.751335 CATTTTGTGCGTAATAAATAACATCCC 58.249 33.333 0.00 0.00 0.00 3.85
2512 3058 9.509855 TCATTTTGTGCGTAATAAATAACATCC 57.490 29.630 0.00 0.00 0.00 3.51
2549 3095 4.357996 GCCACGAACCTAGTACAGAATAC 58.642 47.826 0.00 0.00 0.00 1.89
2713 3259 8.635765 AACATACCATCTAATGTTTCTGTGTT 57.364 30.769 0.00 0.00 42.22 3.32
2739 3285 6.779860 AGAGTAATTACAGAGAGGCCAAAAA 58.220 36.000 17.65 0.00 0.00 1.94
2747 3293 5.362430 AGGCAAGGAGAGTAATTACAGAGAG 59.638 44.000 17.65 2.94 0.00 3.20
2771 3317 6.656270 AGTGATATGCATTTCAAGACACAGAA 59.344 34.615 19.59 0.00 31.96 3.02
2948 3494 7.092716 AGTGAAAATATCAAATGTGAGCAACC 58.907 34.615 0.00 0.00 40.50 3.77
3018 3564 4.882842 TGAGCAATGTACCTAGTCACAA 57.117 40.909 0.00 0.00 0.00 3.33
3101 3647 6.477253 TCCTGTGGCAATAACTATGTTTACA 58.523 36.000 0.00 0.00 0.00 2.41
3135 3681 3.381590 GTCAAACAGCAAGGGAAAACTCT 59.618 43.478 0.00 0.00 0.00 3.24
3136 3682 3.490933 GGTCAAACAGCAAGGGAAAACTC 60.491 47.826 0.00 0.00 0.00 3.01
3184 3731 9.939424 GGGACTGAGGGAGTATATAATACTATT 57.061 37.037 0.00 0.00 33.83 1.73
3185 3732 9.081508 TGGGACTGAGGGAGTATATAATACTAT 57.918 37.037 0.00 0.00 33.83 2.12
3186 3733 8.472682 TGGGACTGAGGGAGTATATAATACTA 57.527 38.462 0.00 0.00 33.83 1.82
3210 3757 8.841444 AGCTTGCAAAAACGTCTTATATTATG 57.159 30.769 0.00 0.00 0.00 1.90
3212 3759 9.929722 CATAGCTTGCAAAAACGTCTTATATTA 57.070 29.630 0.00 0.00 0.00 0.98
3217 3764 5.682943 ACATAGCTTGCAAAAACGTCTTA 57.317 34.783 0.00 0.00 0.00 2.10
3219 3766 4.568152 AACATAGCTTGCAAAAACGTCT 57.432 36.364 0.00 0.00 0.00 4.18
3235 3782 5.682943 AGACGTTTTTGCAAGCTAACATA 57.317 34.783 16.37 0.00 0.00 2.29
3238 3785 8.669394 AATATAAGACGTTTTTGCAAGCTAAC 57.331 30.769 0.00 5.28 0.00 2.34
3241 3788 7.915397 CCATAATATAAGACGTTTTTGCAAGCT 59.085 33.333 0.00 0.00 0.00 3.74
3244 3791 8.185505 GTCCCATAATATAAGACGTTTTTGCAA 58.814 33.333 0.00 0.00 0.00 4.08
3245 3792 7.466185 CGTCCCATAATATAAGACGTTTTTGCA 60.466 37.037 13.04 0.00 43.89 4.08
3246 3793 6.849305 CGTCCCATAATATAAGACGTTTTTGC 59.151 38.462 13.04 0.00 43.89 3.68
3247 3794 7.225145 TCCGTCCCATAATATAAGACGTTTTTG 59.775 37.037 17.31 7.05 46.62 2.44
3251 3798 5.047519 CCTCCGTCCCATAATATAAGACGTT 60.048 44.000 17.31 0.00 46.62 3.99
3252 3799 4.461781 CCTCCGTCCCATAATATAAGACGT 59.538 45.833 17.31 0.00 46.62 4.34
3254 3801 5.021458 TCCCTCCGTCCCATAATATAAGAC 58.979 45.833 0.00 0.00 0.00 3.01
3255 3802 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3256 3803 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3257 3804 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3258 3805 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3259 3806 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3261 3808 2.606378 GTACTCCCTCCGTCCCATAAT 58.394 52.381 0.00 0.00 0.00 1.28
3262 3809 1.412074 GGTACTCCCTCCGTCCCATAA 60.412 57.143 0.00 0.00 0.00 1.90
3264 3811 1.075450 GGTACTCCCTCCGTCCCAT 60.075 63.158 0.00 0.00 0.00 4.00
3266 3813 0.690077 AATGGTACTCCCTCCGTCCC 60.690 60.000 0.00 0.00 0.00 4.46
3267 3814 1.201424 AAATGGTACTCCCTCCGTCC 58.799 55.000 0.00 0.00 0.00 4.79
3276 3824 8.451908 ACAATCTATTGGCTTAAATGGTACTC 57.548 34.615 7.56 0.00 41.96 2.59
3290 3838 5.601662 ACATGTACCGAGACAATCTATTGG 58.398 41.667 0.00 0.00 41.96 3.16
3293 3841 7.818997 TCTAACATGTACCGAGACAATCTAT 57.181 36.000 0.00 0.00 31.83 1.98
3336 3884 8.544687 TCTCCAATCTCTAGAAAGATCAATCA 57.455 34.615 0.00 0.00 34.90 2.57
3364 3912 0.752054 CAGCTAAGAGAGGGCCTCAG 59.248 60.000 33.86 22.90 44.40 3.35
3446 3994 8.792830 TTTGACTGAAAGATTTAGTGGGATAG 57.207 34.615 0.00 0.00 37.43 2.08
3463 4011 4.277476 ACAAGGGTGAAACATTTGACTGA 58.723 39.130 0.00 0.00 39.98 3.41
3476 4024 3.320610 TGGGATTTGAAACAAGGGTGA 57.679 42.857 0.00 0.00 0.00 4.02
3477 4025 4.622260 AATGGGATTTGAAACAAGGGTG 57.378 40.909 0.00 0.00 0.00 4.61
3478 4026 4.657969 TGAAATGGGATTTGAAACAAGGGT 59.342 37.500 0.00 0.00 31.47 4.34
3523 4077 7.686438 AGTGTTCAATGCAATGTCACTAATA 57.314 32.000 23.03 1.08 36.09 0.98
3528 4082 6.475076 TGTTTAAGTGTTCAATGCAATGTCAC 59.525 34.615 17.98 17.98 0.00 3.67
3581 4148 4.222810 GGCAATCCCATCTTGTAAAAACCT 59.777 41.667 0.00 0.00 0.00 3.50
3659 4245 4.332268 GCAAGACTCATTGACTCCATTCTC 59.668 45.833 0.00 0.00 31.55 2.87
3718 4304 7.386059 TGTCTAGCAACTGACTTATTCAATGA 58.614 34.615 0.00 0.00 32.21 2.57
3719 4305 7.601073 TGTCTAGCAACTGACTTATTCAATG 57.399 36.000 0.00 0.00 32.21 2.82
3754 4340 1.075374 AGCAAGTGGCCAATGTTCCTA 59.925 47.619 7.24 0.00 46.50 2.94
3756 4342 0.037975 CAGCAAGTGGCCAATGTTCC 60.038 55.000 7.24 0.00 46.50 3.62
3797 4383 1.303074 AGGCAGCTGGTGTGTCATG 60.303 57.895 17.12 0.00 0.00 3.07
3798 4384 1.002868 GAGGCAGCTGGTGTGTCAT 60.003 57.895 17.12 0.00 0.00 3.06
3806 4392 4.514441 CAGTCTAATAAATGAGGCAGCTGG 59.486 45.833 17.12 0.00 0.00 4.85
3885 4478 2.741486 TACCAGTGGAAACAGCGGGC 62.741 60.000 18.40 0.00 44.46 6.13
3895 4488 4.447138 AAAAAGATGTGGTACCAGTGGA 57.553 40.909 16.93 0.00 0.00 4.02
3957 4550 2.487762 CAGATGGGCAGCTTTTCGTAAA 59.512 45.455 0.00 0.00 0.00 2.01
3982 4575 1.496857 TCATCCAAACACCAAGGGTCA 59.503 47.619 0.00 0.00 31.02 4.02
4026 4619 4.698304 TCCGTTAATTCCATTCAAGACCAC 59.302 41.667 0.00 0.00 0.00 4.16
4046 4658 1.074752 GAGCAAACTTCTGAGCTCCG 58.925 55.000 12.15 4.74 45.79 4.63
4061 4673 9.826574 ACGGAAATAATAAGTAACATAAGAGCA 57.173 29.630 0.00 0.00 0.00 4.26
4116 4728 8.632679 TGGATAGAAAACAATTATCAGCATTCC 58.367 33.333 0.00 0.00 0.00 3.01
4444 5340 6.460953 GGTGTCAATTTGGTTATGTGTCAAGT 60.461 38.462 0.00 0.00 0.00 3.16
4449 5345 4.479158 AGGGTGTCAATTTGGTTATGTGT 58.521 39.130 0.00 0.00 0.00 3.72
4450 5346 6.386654 GTTAGGGTGTCAATTTGGTTATGTG 58.613 40.000 0.00 0.00 0.00 3.21
4508 5405 8.956426 TGGAGTAGCAGAATATGTTTTTAAAGG 58.044 33.333 0.00 0.00 0.00 3.11
4543 5446 9.212641 CACCATTGATCTAGACCTATTGTAATG 57.787 37.037 0.00 0.00 0.00 1.90
4548 5451 4.999950 GCCACCATTGATCTAGACCTATTG 59.000 45.833 0.00 0.00 0.00 1.90
4564 5467 4.705023 GGTGTAAGTTCTAATTGCCACCAT 59.295 41.667 0.00 0.00 0.00 3.55
4585 5488 9.816787 TGTAGTTCCCTTTTTATTATTGAAGGT 57.183 29.630 0.00 0.00 37.53 3.50
4595 5498 7.881232 TCAAATCGACTGTAGTTCCCTTTTTAT 59.119 33.333 0.00 0.00 0.00 1.40
4596 5499 7.172019 GTCAAATCGACTGTAGTTCCCTTTTTA 59.828 37.037 0.00 0.00 41.81 1.52
4605 5510 4.233123 TGACGTCAAATCGACTGTAGTT 57.767 40.909 17.62 0.00 42.98 2.24
4610 5515 1.266550 CGCATGACGTCAAATCGACTG 60.267 52.381 24.13 15.15 42.98 3.51
4629 5534 5.008217 TCAAATGTGGGTTTTGAGTAACTCG 59.992 40.000 0.00 0.00 37.97 4.18
4674 5579 2.357034 GCCTTGACAGGTTCGCGA 60.357 61.111 3.71 3.71 43.18 5.87
4714 5620 0.249447 TGTCTCTGTTGACCACTGCG 60.249 55.000 0.00 0.00 36.21 5.18
4732 5638 7.104043 ACACATCATCCAAAATAATGACCTG 57.896 36.000 0.00 0.00 34.88 4.00
4763 5670 6.456501 ACAAACACTAAAGACTCGAGCTTAT 58.543 36.000 13.61 9.93 0.00 1.73
4764 5671 5.839621 ACAAACACTAAAGACTCGAGCTTA 58.160 37.500 13.61 7.16 0.00 3.09
4770 5677 7.222224 ACTTCACTAACAAACACTAAAGACTCG 59.778 37.037 0.00 0.00 0.00 4.18
4792 5699 8.794335 AAAGACTAGATGGGTATTTTGACTTC 57.206 34.615 0.00 0.00 0.00 3.01
4812 5719 7.224949 GGCTGGTTATGTCACTCTAATAAAGAC 59.775 40.741 0.00 0.00 0.00 3.01
4906 5994 2.755103 GGTTGGCCTATTCAGAACCAAG 59.245 50.000 12.74 0.00 38.03 3.61
4914 6002 6.266131 AGATAAGAATGGTTGGCCTATTCA 57.734 37.500 18.19 9.45 36.07 2.57
4935 6023 3.287222 CCAGTTTTTGAACACAGGGAGA 58.713 45.455 0.00 0.00 0.00 3.71
4938 6026 1.756538 AGCCAGTTTTTGAACACAGGG 59.243 47.619 0.00 0.00 0.00 4.45
4943 6031 6.264292 ACACATACATAGCCAGTTTTTGAACA 59.736 34.615 0.00 0.00 0.00 3.18
4973 6061 2.826128 TCGACAGCACACTTCCTATTCT 59.174 45.455 0.00 0.00 0.00 2.40
5055 6143 5.034554 TCAAATGACGTCATCAGCTTTTC 57.965 39.130 30.06 0.00 41.91 2.29
5067 6155 4.186926 CTCATGGTCTCATCAAATGACGT 58.813 43.478 0.00 0.00 35.06 4.34
5069 6157 4.521146 ACCTCATGGTCTCATCAAATGAC 58.479 43.478 0.00 0.00 44.78 3.06
5128 6216 3.441572 GCATGTGAGGTAGCATCAAGTTT 59.558 43.478 0.00 0.00 0.00 2.66
5196 6311 8.438676 AACAGCATACTACAATAGAACAATCC 57.561 34.615 0.00 0.00 0.00 3.01
5216 6331 8.986477 ACAATGGTTTATATTTCTGAAACAGC 57.014 30.769 4.73 0.00 35.26 4.40
5290 6405 8.633075 TGAAGATTCGAATTTATGAAAATGGC 57.367 30.769 12.81 0.00 35.46 4.40
5301 6416 6.405842 GCCCCTACAATTGAAGATTCGAATTT 60.406 38.462 13.59 3.29 0.00 1.82
5304 6419 3.945285 GCCCCTACAATTGAAGATTCGAA 59.055 43.478 13.59 0.00 0.00 3.71
5306 6421 3.313526 CAGCCCCTACAATTGAAGATTCG 59.686 47.826 13.59 0.00 0.00 3.34
5307 6422 4.273318 ACAGCCCCTACAATTGAAGATTC 58.727 43.478 13.59 0.00 0.00 2.52
5429 6544 0.184451 ACCAGATGGGCATGGATGAC 59.816 55.000 3.48 0.00 42.05 3.06
5438 6553 2.303311 GGGAGATAGTTACCAGATGGGC 59.697 54.545 3.48 0.00 42.05 5.36
5447 6562 9.145442 AGAAGTATTTACTGGGGAGATAGTTAC 57.855 37.037 0.00 0.00 36.50 2.50
5451 6566 8.707796 TGTAGAAGTATTTACTGGGGAGATAG 57.292 38.462 0.00 0.00 36.50 2.08
5468 6583 8.367911 TGTCACTAATGTTGAAGATGTAGAAGT 58.632 33.333 0.00 0.00 0.00 3.01
5480 6595 7.935520 TGCAAATAAAGTGTCACTAATGTTGA 58.064 30.769 5.77 0.00 0.00 3.18
5541 6661 6.272324 TCCTGGCTAAATGCTACTAATGGTAT 59.728 38.462 0.00 0.00 42.39 2.73
5586 6706 4.205587 AGAGAATCAACCAATGGATGCTC 58.794 43.478 6.16 6.91 43.67 4.26
5589 6709 4.529897 TGGAGAGAATCAACCAATGGATG 58.470 43.478 6.16 4.31 39.92 3.51
5591 6711 4.227982 TCATGGAGAGAATCAACCAATGGA 59.772 41.667 6.16 0.00 44.20 3.41
5615 6735 5.722441 TCATACCTTAGGTTCATGGTACACA 59.278 40.000 10.01 0.00 38.16 3.72
5618 6738 6.231211 CCATCATACCTTAGGTTCATGGTAC 58.769 44.000 10.01 0.00 37.80 3.34
5648 6768 6.953520 TGGGATTCACAAAAGAATGGATAAGT 59.046 34.615 0.00 0.00 38.30 2.24
5649 6769 7.408756 TGGGATTCACAAAAGAATGGATAAG 57.591 36.000 0.00 0.00 38.30 1.73
5650 6770 7.789202 TTGGGATTCACAAAAGAATGGATAA 57.211 32.000 0.00 0.00 38.30 1.75
5653 6773 6.043012 ACATTTGGGATTCACAAAAGAATGGA 59.957 34.615 20.18 0.00 40.74 3.41
5654 6774 6.232692 ACATTTGGGATTCACAAAAGAATGG 58.767 36.000 20.18 8.56 40.74 3.16
5656 6776 8.212995 AGAAACATTTGGGATTCACAAAAGAAT 58.787 29.630 20.18 10.02 40.74 2.40
5657 6777 7.563906 AGAAACATTTGGGATTCACAAAAGAA 58.436 30.769 20.18 0.00 40.74 2.52
5659 6779 9.492973 AATAGAAACATTTGGGATTCACAAAAG 57.507 29.630 17.47 15.37 40.74 2.27
5660 6780 9.487790 GAATAGAAACATTTGGGATTCACAAAA 57.512 29.630 17.47 0.49 40.74 2.44
5693 6813 5.361857 CCTGCAAGAAGAATCCCATGTAAAT 59.638 40.000 0.00 0.00 34.07 1.40
5793 6913 8.275015 TCTCAGACTTGTAATTGACACAAAAA 57.725 30.769 0.00 0.00 37.96 1.94
5797 6917 6.758254 TGATCTCAGACTTGTAATTGACACA 58.242 36.000 0.00 0.00 37.96 3.72
5838 6958 7.571025 AGGTTTGAAGTGAAGGAACTAGTAAA 58.429 34.615 0.00 0.00 38.49 2.01
5866 6987 9.905713 AAGAAAATGTCACTAATCCTTATGCTA 57.094 29.630 0.00 0.00 0.00 3.49
5980 7105 0.941542 AGAAGTTGTGCGCGCTAAAA 59.058 45.000 33.29 20.05 0.00 1.52
5987 7112 0.447801 CACCCATAGAAGTTGTGCGC 59.552 55.000 0.00 0.00 0.00 6.09
5989 7114 2.488153 GTTCCACCCATAGAAGTTGTGC 59.512 50.000 0.00 0.00 0.00 4.57
5994 7121 5.652452 GCTTATTTGTTCCACCCATAGAAGT 59.348 40.000 0.00 0.00 0.00 3.01
5995 7122 5.888161 AGCTTATTTGTTCCACCCATAGAAG 59.112 40.000 0.00 0.00 0.00 2.85
6033 7160 9.334947 ACTATGTCCATATATAAATGCAGATGC 57.665 33.333 0.00 0.00 42.50 3.91
6089 7255 7.330262 TCAAACTGCCAAATCTTTTCTTCTTT 58.670 30.769 0.00 0.00 0.00 2.52
6105 7272 4.691216 AGATCTTAACGTTCTCAAACTGCC 59.309 41.667 2.82 0.00 32.95 4.85
6118 7285 9.900710 ATAGTCAAGCTATAACAGATCTTAACG 57.099 33.333 0.00 0.00 38.56 3.18
6147 7315 9.778993 CACTAGTTTCTGGACATGAAAATTATG 57.221 33.333 0.00 0.00 35.54 1.90
6230 7398 4.043435 AGAACACCAGCCCTTTCTTCTATT 59.957 41.667 0.00 0.00 0.00 1.73
6234 7402 2.278332 AGAACACCAGCCCTTTCTTC 57.722 50.000 0.00 0.00 0.00 2.87
6335 7503 0.249073 CCTCGTCCGGACTAATGCAG 60.249 60.000 30.92 14.47 0.00 4.41
6344 7512 2.684881 GACAACTTATACCTCGTCCGGA 59.315 50.000 0.00 0.00 0.00 5.14
6367 7535 5.073691 CCATGGAAGATGTATAGGGGAACTT 59.926 44.000 5.56 0.00 0.00 2.66
6376 7544 5.104569 TGACTTGCACCATGGAAGATGTATA 60.105 40.000 21.47 2.17 46.92 1.47
6377 7545 4.202441 GACTTGCACCATGGAAGATGTAT 58.798 43.478 21.47 0.00 46.92 2.29
6398 7566 5.603596 AGAAGAAAATGCAGCAACATTTGA 58.396 33.333 15.20 0.00 46.80 2.69
6426 7594 8.930760 CAAGACTAGATTTGTAACTGAAGGAAG 58.069 37.037 0.00 0.00 0.00 3.46
6455 7623 9.435688 GCCATGTTATTTAGAACAAAGGAAATT 57.564 29.630 13.07 0.00 42.39 1.82
6459 7627 6.013379 TGGCCATGTTATTTAGAACAAAGGA 58.987 36.000 0.00 0.00 42.39 3.36
6460 7628 6.279513 TGGCCATGTTATTTAGAACAAAGG 57.720 37.500 0.00 7.37 42.39 3.11
6461 7629 8.600449 TTTTGGCCATGTTATTTAGAACAAAG 57.400 30.769 6.09 0.00 42.39 2.77
6463 7631 9.566432 AAATTTTGGCCATGTTATTTAGAACAA 57.434 25.926 6.09 0.00 42.39 2.83
6502 7670 8.095169 ACGGAAGCTTAGGGTATTATCTATTTG 58.905 37.037 0.00 0.00 0.00 2.32
6503 7671 8.203681 ACGGAAGCTTAGGGTATTATCTATTT 57.796 34.615 0.00 0.00 0.00 1.40
6508 7676 5.850614 TCAACGGAAGCTTAGGGTATTATC 58.149 41.667 0.00 0.00 0.00 1.75
6513 7681 3.118519 GGATTCAACGGAAGCTTAGGGTA 60.119 47.826 0.00 0.00 39.36 3.69
6544 7716 3.194005 TGGCGGCCAAACAAATTTTAA 57.806 38.095 21.55 0.00 0.00 1.52
6560 7732 2.466846 CAAGTACCGGTAGTATTGGCG 58.533 52.381 22.18 3.87 32.28 5.69
6561 7733 2.207590 GCAAGTACCGGTAGTATTGGC 58.792 52.381 22.18 18.02 31.19 4.52
6576 7748 9.908152 GGTTACAAAGTTAGAAATAATGCAAGT 57.092 29.630 0.00 0.00 0.00 3.16
6788 7960 1.067776 GTGCGCCTTAGTAGTGTCAGT 60.068 52.381 4.18 0.00 0.00 3.41
6880 8052 2.030805 GCTGTGAACACAACCCTGAATC 60.031 50.000 8.93 0.00 41.33 2.52
7010 8182 7.665559 GCAACAAGTAATATGGATCATAGGGAA 59.334 37.037 0.00 0.00 29.42 3.97
7067 8244 5.186198 AGATGGAAGAATGTTTTACTCCCG 58.814 41.667 0.00 0.00 0.00 5.14
7185 8363 6.611613 TCTAAGATCCGAATTATGAGCCAT 57.388 37.500 0.00 0.00 0.00 4.40
7266 8446 3.628942 TCAGGAAGGCATTGATTGATTCG 59.371 43.478 0.00 0.00 0.00 3.34
7280 8463 5.587844 CAGGAAGACATATTGTTCAGGAAGG 59.412 44.000 0.00 0.00 0.00 3.46
7282 8465 6.373005 TCAGGAAGACATATTGTTCAGGAA 57.627 37.500 0.00 0.00 0.00 3.36
7321 8504 8.911918 TTGTCAAATGTACTAAGAGGCTTTTA 57.088 30.769 0.00 0.00 0.00 1.52
7346 8529 1.789523 TCTTGGCGGGAGTATTAGCT 58.210 50.000 0.00 0.00 0.00 3.32
7515 8702 1.220169 CTCCTGCGCGAATCTGATGG 61.220 60.000 12.10 0.00 0.00 3.51
7600 8796 3.305950 GCAGGAGCAACATCGATCTAGAT 60.306 47.826 4.47 4.47 41.58 1.98
7603 8799 2.515926 GCAGGAGCAACATCGATCTA 57.484 50.000 0.00 0.00 41.58 1.98
7626 13221 4.161377 AGAGTCCCTACAAGAAGATCAAGC 59.839 45.833 0.00 0.00 0.00 4.01
7645 13240 1.836802 GAGGATCTGCCCAAGAAGAGT 59.163 52.381 0.00 0.00 38.79 3.24
7708 13303 2.601763 GCTGTCAAAATACTACGACGGG 59.398 50.000 0.00 0.00 35.68 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.