Multiple sequence alignment - TraesCS3A01G276700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G276700 chr3A 100.000 5936 0 0 1 5936 506799050 506804985 0.000000e+00 10962.0
1 TraesCS3A01G276700 chr3A 84.351 1540 170 41 2714 4215 83691673 83693179 0.000000e+00 1443.0
2 TraesCS3A01G276700 chr3A 93.767 722 41 4 1 720 506779469 506780188 0.000000e+00 1081.0
3 TraesCS3A01G276700 chr3A 79.302 860 139 27 1379 2226 506915536 506916368 3.110000e-157 566.0
4 TraesCS3A01G276700 chr3A 76.796 905 172 21 1329 2229 505238512 505237642 1.940000e-129 473.0
5 TraesCS3A01G276700 chr3A 84.549 233 28 5 5710 5936 594521978 594522208 2.150000e-54 224.0
6 TraesCS3A01G276700 chr3A 82.843 204 29 3 4694 4891 83693368 83693571 1.700000e-40 178.0
7 TraesCS3A01G276700 chr3A 98.864 88 1 0 4604 4691 220743731 220743644 2.210000e-34 158.0
8 TraesCS3A01G276700 chr3D 92.891 3854 180 42 817 4607 384247216 384251038 0.000000e+00 5513.0
9 TraesCS3A01G276700 chr3D 92.773 844 46 13 4732 5567 384251114 384251950 0.000000e+00 1206.0
10 TraesCS3A01G276700 chr3D 78.197 954 149 43 1295 2226 384442046 384442962 6.720000e-154 555.0
11 TraesCS3A01G276700 chr3D 76.898 909 168 21 1327 2229 382118012 382117140 1.500000e-130 477.0
12 TraesCS3A01G276700 chr3D 76.831 915 170 24 1329 2237 382505414 382504536 1.500000e-130 477.0
13 TraesCS3A01G276700 chr3D 86.283 226 24 5 5712 5933 550744858 550744636 7.690000e-59 239.0
14 TraesCS3A01G276700 chr3D 85.577 104 6 5 5570 5673 384267648 384267742 3.790000e-17 100.0
15 TraesCS3A01G276700 chr3D 96.364 55 1 1 4686 4739 384251042 384251096 8.190000e-14 89.8
16 TraesCS3A01G276700 chr3B 93.633 2513 108 23 720 3204 499450176 499452664 0.000000e+00 3707.0
17 TraesCS3A01G276700 chr3B 94.845 1358 50 9 3268 4607 499452679 499454034 0.000000e+00 2102.0
18 TraesCS3A01G276700 chr3B 92.122 952 52 8 4732 5669 499454109 499455051 0.000000e+00 1321.0
19 TraesCS3A01G276700 chr3B 85.507 897 103 16 2714 3592 754377636 754378523 0.000000e+00 911.0
20 TraesCS3A01G276700 chr3B 85.779 661 71 12 2714 3356 356863244 356862589 0.000000e+00 678.0
21 TraesCS3A01G276700 chr3B 79.675 861 134 28 1379 2226 499628394 499629226 3.080000e-162 582.0
22 TraesCS3A01G276700 chr3B 86.667 465 53 7 3412 3870 356862590 356862129 1.910000e-139 507.0
23 TraesCS3A01G276700 chr3B 77.268 915 168 20 1329 2237 498065493 498064613 8.880000e-138 501.0
24 TraesCS3A01G276700 chr3B 82.562 281 19 16 3951 4215 356862102 356861836 2.780000e-53 220.0
25 TraesCS3A01G276700 chr3B 90.000 110 9 1 4604 4713 146948354 146948461 2.230000e-29 141.0
26 TraesCS3A01G276700 chr3B 90.654 107 8 2 4595 4701 242550980 242551084 2.230000e-29 141.0
27 TraesCS3A01G276700 chr3B 96.364 55 1 1 4686 4739 499454038 499454092 8.190000e-14 89.8
28 TraesCS3A01G276700 chr2A 90.897 725 56 8 3 720 170593915 170594636 0.000000e+00 965.0
29 TraesCS3A01G276700 chr2A 90.456 723 62 6 1 719 608672220 608672939 0.000000e+00 946.0
30 TraesCS3A01G276700 chr2A 89.751 722 69 5 1 720 475137442 475138160 0.000000e+00 918.0
31 TraesCS3A01G276700 chr6A 90.305 722 67 3 1 719 152232205 152231484 0.000000e+00 942.0
32 TraesCS3A01G276700 chr6A 89.903 723 69 4 1 720 152181535 152180814 0.000000e+00 928.0
33 TraesCS3A01G276700 chr6A 89.903 723 70 3 1 720 152243809 152243087 0.000000e+00 928.0
34 TraesCS3A01G276700 chr6A 79.832 238 33 13 5710 5936 615954658 615954425 6.160000e-35 159.0
35 TraesCS3A01G276700 chr6A 94.845 97 5 0 4596 4692 26975963 26976059 1.030000e-32 152.0
36 TraesCS3A01G276700 chr5A 90.193 724 64 6 1 720 661654432 661653712 0.000000e+00 937.0
37 TraesCS3A01G276700 chr5A 82.906 234 27 9 5713 5936 395879521 395879291 1.300000e-46 198.0
38 TraesCS3A01G276700 chr5A 88.542 96 11 0 3456 3551 219312150 219312245 3.760000e-22 117.0
39 TraesCS3A01G276700 chr7A 90.083 726 60 11 1 721 532209694 532208976 0.000000e+00 931.0
40 TraesCS3A01G276700 chr7A 85.973 663 69 11 2714 3356 13466087 13465429 0.000000e+00 688.0
41 TraesCS3A01G276700 chr7A 84.100 239 31 3 5704 5936 14295829 14296066 2.150000e-54 224.0
42 TraesCS3A01G276700 chr7A 82.500 240 35 2 5703 5936 14286665 14286903 2.800000e-48 204.0
43 TraesCS3A01G276700 chr4A 86.191 659 68 12 2714 3356 511083370 511082719 0.000000e+00 691.0
44 TraesCS3A01G276700 chr4A 86.364 462 56 6 3412 3870 511082720 511082263 1.150000e-136 497.0
45 TraesCS3A01G276700 chr4A 83.571 280 17 15 3951 4215 511082236 511081971 9.950000e-58 235.0
46 TraesCS3A01G276700 chr4A 85.238 210 25 2 5733 5936 13515609 13515400 1.680000e-50 211.0
47 TraesCS3A01G276700 chr4A 84.434 212 27 2 4686 4894 511081780 511081572 2.800000e-48 204.0
48 TraesCS3A01G276700 chr5B 82.128 235 26 9 5710 5933 514271269 514271498 2.820000e-43 187.0
49 TraesCS3A01G276700 chr7B 80.851 235 35 9 5710 5935 654863517 654863750 6.110000e-40 176.0
50 TraesCS3A01G276700 chr1D 85.714 161 20 2 3700 3859 491724535 491724377 3.680000e-37 167.0
51 TraesCS3A01G276700 chrUn 96.809 94 3 0 4601 4694 77489855 77489762 2.210000e-34 158.0
52 TraesCS3A01G276700 chr6B 94.059 101 6 0 4592 4692 716607882 716607782 2.860000e-33 154.0
53 TraesCS3A01G276700 chr4B 93.939 99 5 1 4597 4695 609928514 609928611 1.330000e-31 148.0
54 TraesCS3A01G276700 chr2D 91.509 106 5 4 4585 4689 366499485 366499383 6.200000e-30 143.0
55 TraesCS3A01G276700 chr7D 89.381 113 9 3 4581 4691 136013421 136013310 8.020000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G276700 chr3A 506799050 506804985 5935 False 10962.000000 10962 100.000000 1 5936 1 chr3A.!!$F2 5935
1 TraesCS3A01G276700 chr3A 506779469 506780188 719 False 1081.000000 1081 93.767000 1 720 1 chr3A.!!$F1 719
2 TraesCS3A01G276700 chr3A 83691673 83693571 1898 False 810.500000 1443 83.597000 2714 4891 2 chr3A.!!$F5 2177
3 TraesCS3A01G276700 chr3A 506915536 506916368 832 False 566.000000 566 79.302000 1379 2226 1 chr3A.!!$F3 847
4 TraesCS3A01G276700 chr3A 505237642 505238512 870 True 473.000000 473 76.796000 1329 2229 1 chr3A.!!$R2 900
5 TraesCS3A01G276700 chr3D 384247216 384251950 4734 False 2269.600000 5513 94.009333 817 5567 3 chr3D.!!$F3 4750
6 TraesCS3A01G276700 chr3D 384442046 384442962 916 False 555.000000 555 78.197000 1295 2226 1 chr3D.!!$F2 931
7 TraesCS3A01G276700 chr3D 382117140 382118012 872 True 477.000000 477 76.898000 1327 2229 1 chr3D.!!$R1 902
8 TraesCS3A01G276700 chr3D 382504536 382505414 878 True 477.000000 477 76.831000 1329 2237 1 chr3D.!!$R2 908
9 TraesCS3A01G276700 chr3B 499450176 499455051 4875 False 1804.950000 3707 94.241000 720 5669 4 chr3B.!!$F5 4949
10 TraesCS3A01G276700 chr3B 754377636 754378523 887 False 911.000000 911 85.507000 2714 3592 1 chr3B.!!$F4 878
11 TraesCS3A01G276700 chr3B 499628394 499629226 832 False 582.000000 582 79.675000 1379 2226 1 chr3B.!!$F3 847
12 TraesCS3A01G276700 chr3B 498064613 498065493 880 True 501.000000 501 77.268000 1329 2237 1 chr3B.!!$R1 908
13 TraesCS3A01G276700 chr3B 356861836 356863244 1408 True 468.333333 678 85.002667 2714 4215 3 chr3B.!!$R2 1501
14 TraesCS3A01G276700 chr2A 170593915 170594636 721 False 965.000000 965 90.897000 3 720 1 chr2A.!!$F1 717
15 TraesCS3A01G276700 chr2A 608672220 608672939 719 False 946.000000 946 90.456000 1 719 1 chr2A.!!$F3 718
16 TraesCS3A01G276700 chr2A 475137442 475138160 718 False 918.000000 918 89.751000 1 720 1 chr2A.!!$F2 719
17 TraesCS3A01G276700 chr6A 152231484 152232205 721 True 942.000000 942 90.305000 1 719 1 chr6A.!!$R2 718
18 TraesCS3A01G276700 chr6A 152180814 152181535 721 True 928.000000 928 89.903000 1 720 1 chr6A.!!$R1 719
19 TraesCS3A01G276700 chr6A 152243087 152243809 722 True 928.000000 928 89.903000 1 720 1 chr6A.!!$R3 719
20 TraesCS3A01G276700 chr5A 661653712 661654432 720 True 937.000000 937 90.193000 1 720 1 chr5A.!!$R2 719
21 TraesCS3A01G276700 chr7A 532208976 532209694 718 True 931.000000 931 90.083000 1 721 1 chr7A.!!$R2 720
22 TraesCS3A01G276700 chr7A 13465429 13466087 658 True 688.000000 688 85.973000 2714 3356 1 chr7A.!!$R1 642
23 TraesCS3A01G276700 chr4A 511081572 511083370 1798 True 406.750000 691 85.140000 2714 4894 4 chr4A.!!$R2 2180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 455 0.106167 GGGGAAATAAGGACCCTGCC 60.106 60.0 0.00 0.0 42.86 4.85 F
725 747 0.107703 CAGAATGCCGACAGCCCTAA 60.108 55.0 0.00 0.0 42.71 2.69 F
726 748 0.179000 AGAATGCCGACAGCCCTAAG 59.821 55.0 0.00 0.0 42.71 2.18 F
946 981 0.515564 AATCGTTGCAACACGTAGCC 59.484 50.0 28.01 0.0 41.16 3.93 F
2325 2383 0.401356 TGGGCAGCACTCTCATTTCA 59.599 50.0 0.00 0.0 0.00 2.69 F
2326 2384 0.807496 GGGCAGCACTCTCATTTCAC 59.193 55.0 0.00 0.0 0.00 3.18 F
3606 3694 0.676466 TTGGTGGCGCATAAGTCTGG 60.676 55.0 10.83 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 1922 0.029035 GCGTCGGTGTAGATGATCGT 59.971 55.0 0.00 0.00 0.00 3.73 R
1966 2024 0.187851 CCGTAGTAGAGGGTCCCCAT 59.812 60.0 3.51 0.00 38.92 4.00 R
2255 2313 0.379669 CATGATTCTTGGACCGCTGC 59.620 55.0 0.00 0.00 0.00 5.25 R
2330 2388 0.893270 CATTTCCCTGCGGGTCACAA 60.893 55.0 11.58 0.00 44.74 3.33 R
3606 3694 0.237498 CGAAAGGGAGCACGGTTTTC 59.763 55.0 0.00 0.00 0.00 2.29 R
3875 3970 0.575390 GTCGGCGATACAATGGAACG 59.425 55.0 14.79 0.00 0.00 3.95 R
5592 5767 0.460284 GTAGGCGCATACTGCAGTGT 60.460 55.0 29.57 20.69 45.36 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.557056 TGGACAGTACAGAGGAAGAACG 59.443 50.000 0.00 0.00 0.00 3.95
200 218 2.368875 GCCTCTCCCCGAATAATTGAGA 59.631 50.000 0.00 0.00 0.00 3.27
221 239 1.531739 GGAAGGGCGCCAACAATTGA 61.532 55.000 30.85 0.00 0.00 2.57
229 247 3.321497 GCGCCAACAATTGACCATTTTA 58.679 40.909 13.59 0.00 0.00 1.52
241 259 6.755542 TTGACCATTTTAAAGGGGAACATT 57.244 33.333 13.08 0.00 34.57 2.71
395 413 2.124736 GCGTGATGCCTTGGCCTA 60.125 61.111 3.32 0.00 37.76 3.93
437 455 0.106167 GGGGAAATAAGGACCCTGCC 60.106 60.000 0.00 0.00 42.86 4.85
482 500 0.178767 CCTGGCCTTGATCGTCATGA 59.821 55.000 3.32 0.00 0.00 3.07
499 517 0.904649 TGACTTGCGTCATGGGATCT 59.095 50.000 0.00 0.00 44.85 2.75
527 545 2.103263 GGTACCCTCGCATTGATCTCTT 59.897 50.000 0.00 0.00 0.00 2.85
563 585 2.411701 CCGATGACGCCGCTCTTA 59.588 61.111 0.00 0.00 38.29 2.10
668 690 3.535629 CTTCACCTGAGCCACGCCA 62.536 63.158 0.00 0.00 0.00 5.69
721 743 2.819984 TTCCCAGAATGCCGACAGCC 62.820 60.000 0.00 0.00 42.71 4.85
722 744 2.825836 CCAGAATGCCGACAGCCC 60.826 66.667 0.00 0.00 42.71 5.19
723 745 2.270205 CAGAATGCCGACAGCCCT 59.730 61.111 0.00 0.00 42.71 5.19
724 746 1.522092 CAGAATGCCGACAGCCCTA 59.478 57.895 0.00 0.00 42.71 3.53
725 747 0.107703 CAGAATGCCGACAGCCCTAA 60.108 55.000 0.00 0.00 42.71 2.69
726 748 0.179000 AGAATGCCGACAGCCCTAAG 59.821 55.000 0.00 0.00 42.71 2.18
727 749 0.815615 GAATGCCGACAGCCCTAAGG 60.816 60.000 0.00 0.00 42.71 2.69
728 750 1.562672 AATGCCGACAGCCCTAAGGT 61.563 55.000 0.00 0.00 42.71 3.50
745 767 1.002888 AGGTGCAATCTGTGAGTCCAG 59.997 52.381 0.00 3.04 0.00 3.86
828 850 4.756642 TCTTGTCACATTTGCTCAAGGTAG 59.243 41.667 12.89 0.00 36.23 3.18
829 851 3.411446 TGTCACATTTGCTCAAGGTAGG 58.589 45.455 0.00 0.00 0.00 3.18
834 856 4.631813 CACATTTGCTCAAGGTAGGAGTAC 59.368 45.833 0.00 0.00 34.83 2.73
836 858 5.720041 ACATTTGCTCAAGGTAGGAGTACTA 59.280 40.000 0.00 0.00 34.83 1.82
837 859 5.916661 TTTGCTCAAGGTAGGAGTACTAG 57.083 43.478 0.00 0.00 34.83 2.57
913 935 7.924412 TGAATAGGGTCATCGACATTAGTTTAC 59.076 37.037 0.00 0.00 33.68 2.01
915 937 5.903810 AGGGTCATCGACATTAGTTTACTC 58.096 41.667 0.00 0.00 33.68 2.59
946 981 0.515564 AATCGTTGCAACACGTAGCC 59.484 50.000 28.01 0.00 41.16 3.93
988 1023 1.134694 GAGGCGATTTTCGTGGCAC 59.865 57.895 7.79 7.79 42.81 5.01
1174 1226 2.743538 GCAGCAGCCGTGACATGA 60.744 61.111 0.00 0.00 33.58 3.07
1392 1447 2.665603 GCGCTCTTCCTCACCCTT 59.334 61.111 0.00 0.00 0.00 3.95
1558 1613 1.762858 GTGCTCCTCTCCTACCCCC 60.763 68.421 0.00 0.00 0.00 5.40
1568 1623 2.687566 CTACCCCCTCCACCGCTT 60.688 66.667 0.00 0.00 0.00 4.68
2054 2112 3.177920 CTGCGAGCGTCTGAGCAC 61.178 66.667 0.00 0.00 40.15 4.40
2279 2337 1.683011 CGGTCCAAGAATCATGGGCTT 60.683 52.381 9.07 0.00 42.32 4.35
2308 2366 8.506168 TCTTTTTGTCTAGCCTACATTATTGG 57.494 34.615 0.00 0.00 0.00 3.16
2325 2383 0.401356 TGGGCAGCACTCTCATTTCA 59.599 50.000 0.00 0.00 0.00 2.69
2326 2384 0.807496 GGGCAGCACTCTCATTTCAC 59.193 55.000 0.00 0.00 0.00 3.18
2327 2385 1.612726 GGGCAGCACTCTCATTTCACT 60.613 52.381 0.00 0.00 0.00 3.41
2328 2386 1.736681 GGCAGCACTCTCATTTCACTC 59.263 52.381 0.00 0.00 0.00 3.51
2330 2388 2.614987 GCAGCACTCTCATTTCACTCCT 60.615 50.000 0.00 0.00 0.00 3.69
2378 2436 4.425577 AGCAACCATCGAAAATGTCTTC 57.574 40.909 0.00 0.00 0.00 2.87
2396 2454 3.526931 TTCGCTGTGATAGAAGGGAAG 57.473 47.619 0.00 0.00 39.57 3.46
2458 2516 4.703645 TCCGTAGATTCTGACAGTCAAG 57.296 45.455 4.41 0.00 0.00 3.02
2477 2535 7.063191 CAGTCAAGTCTGATAATGAAGTCAGTG 59.937 40.741 2.72 0.00 41.92 3.66
2524 2582 7.277319 CGAGTAGTTCCTTTACTTTATCAACCC 59.723 40.741 0.00 0.00 31.74 4.11
2533 2591 3.844640 ACTTTATCAACCCAAGCCAACT 58.155 40.909 0.00 0.00 0.00 3.16
2534 2592 3.573967 ACTTTATCAACCCAAGCCAACTG 59.426 43.478 0.00 0.00 0.00 3.16
2547 2607 2.649816 AGCCAACTGGAAGGGTAAAGAT 59.350 45.455 0.00 0.00 39.30 2.40
2580 2646 2.425312 AGGCGATCGCTAGATTCTATGG 59.575 50.000 36.25 0.00 41.60 2.74
2587 2653 7.451429 CGATCGCTAGATTCTATGGAATTTTG 58.549 38.462 0.26 2.92 41.68 2.44
2619 2685 1.043816 GCATCGGATTCTCCCTGAGA 58.956 55.000 0.00 0.00 36.86 3.27
2626 2692 2.768527 GGATTCTCCCTGAGACATGTCA 59.231 50.000 27.02 7.83 38.51 3.58
2663 2730 5.984926 ACAATGTTAAATTTGCCTCTGTGTG 59.015 36.000 0.00 0.00 0.00 3.82
2668 2735 6.533367 TGTTAAATTTGCCTCTGTGTGTTTTC 59.467 34.615 0.00 0.00 0.00 2.29
2674 2741 4.493547 TGCCTCTGTGTGTTTTCTTTTTG 58.506 39.130 0.00 0.00 0.00 2.44
2718 2785 1.600957 CATCGTGATGCCTGGACATTC 59.399 52.381 0.00 0.00 31.39 2.67
2794 2866 7.446625 ACCTTATTGATATCTGTTCTGAATGCC 59.553 37.037 3.98 0.00 0.00 4.40
2845 2917 5.754890 TGACTCGGTACCTACTTTTGTTTTC 59.245 40.000 10.90 0.00 0.00 2.29
2848 2920 5.058490 TCGGTACCTACTTTTGTTTTCAGG 58.942 41.667 10.90 0.00 32.21 3.86
2967 3039 3.921767 TTGCTCGCGTGCTCTCAGG 62.922 63.158 30.29 2.36 0.00 3.86
3116 3188 2.620367 GGACATATCAGTGTTTGGGCCA 60.620 50.000 0.00 0.00 31.16 5.36
3125 3197 1.002011 GTTTGGGCCAGGAGGTCTC 60.002 63.158 6.23 0.00 40.27 3.36
3175 3247 4.281435 TGAATTGATCAAGGAAGCAAGCAA 59.719 37.500 14.54 0.00 34.30 3.91
3186 3258 6.603940 AGGAAGCAAGCAAAATGGTATTTA 57.396 33.333 0.00 0.00 0.00 1.40
3191 3263 6.466812 AGCAAGCAAAATGGTATTTAAGCTT 58.533 32.000 3.48 3.48 41.27 3.74
3200 3272 5.890424 TGGTATTTAAGCTTTGCACCTAC 57.110 39.130 3.20 0.00 0.00 3.18
3242 3324 4.261197 CGTGAGCAGCACTGAGTACATATA 60.261 45.833 0.81 0.00 45.49 0.86
3249 3331 6.442952 CAGCACTGAGTACATATAAGAGACC 58.557 44.000 0.00 0.00 0.00 3.85
3418 3506 6.458751 GGTCATATAATTCTGTTGTGGCACAG 60.459 42.308 20.97 9.74 44.96 3.66
3433 3521 3.135895 TGGCACAGATGAGTGATCATGAT 59.864 43.478 8.25 8.25 42.05 2.45
3491 3579 3.733077 GCTCCGATTTTCAGATTGCAAGG 60.733 47.826 4.94 0.00 0.00 3.61
3573 3661 5.831997 TCGACATGTCTTATGGACTATGTG 58.168 41.667 22.95 3.06 44.74 3.21
3602 3690 1.165270 GTTCTTGGTGGCGCATAAGT 58.835 50.000 10.83 0.00 0.00 2.24
3606 3694 0.676466 TTGGTGGCGCATAAGTCTGG 60.676 55.000 10.83 0.00 0.00 3.86
3667 3761 9.663904 TCATTTTAAAAAGAAATCAGTCGACTG 57.336 29.630 34.76 34.76 45.08 3.51
3875 3970 7.401484 TTCAAATTCAAAAAGTACAATCGGC 57.599 32.000 0.00 0.00 0.00 5.54
3884 3979 2.006888 AGTACAATCGGCGTTCCATTG 58.993 47.619 14.98 14.98 37.13 2.82
3910 4005 3.270877 GCCGACTAATCCATTTGACTGT 58.729 45.455 0.00 0.00 0.00 3.55
4198 4315 3.498397 AGCTCCAACAATTACTTGACACG 59.502 43.478 0.00 0.00 36.20 4.49
4218 4335 0.391130 TGGACTATGTGCCGTCTTGC 60.391 55.000 0.00 0.00 0.00 4.01
4322 4439 3.435186 GCTTGAGAAGGCGGCCAC 61.435 66.667 23.09 14.62 0.00 5.01
4395 4512 3.004734 CAGCTTTCACCGAAATTTCCAGT 59.995 43.478 12.54 7.56 30.85 4.00
4404 4521 7.595604 TCACCGAAATTTCCAGTTATAAAACC 58.404 34.615 12.54 0.00 36.15 3.27
4477 4594 1.284982 CGAGGGAACGCACACTGAAG 61.285 60.000 0.00 0.00 0.00 3.02
4529 4646 2.357517 AGCGAGCCTTCACCAACG 60.358 61.111 0.00 0.00 0.00 4.10
4586 4707 1.550524 TGGTGAGTAGCATCGAAGCTT 59.449 47.619 21.43 3.10 43.70 3.74
4607 4728 3.861840 TCAGGCTTGTTGCATAGTACTC 58.138 45.455 0.00 0.00 45.15 2.59
4609 4730 2.092914 AGGCTTGTTGCATAGTACTCCC 60.093 50.000 0.00 0.00 45.15 4.30
4610 4731 2.092914 GGCTTGTTGCATAGTACTCCCT 60.093 50.000 0.00 0.00 45.15 4.20
4611 4732 3.198872 GCTTGTTGCATAGTACTCCCTC 58.801 50.000 0.00 0.00 42.31 4.30
4612 4733 3.798202 CTTGTTGCATAGTACTCCCTCC 58.202 50.000 0.00 0.00 0.00 4.30
4613 4734 1.754803 TGTTGCATAGTACTCCCTCCG 59.245 52.381 0.00 0.00 0.00 4.63
4614 4735 1.755380 GTTGCATAGTACTCCCTCCGT 59.245 52.381 0.00 0.00 0.00 4.69
4615 4736 2.954318 GTTGCATAGTACTCCCTCCGTA 59.046 50.000 0.00 0.00 0.00 4.02
4616 4737 3.301794 TGCATAGTACTCCCTCCGTAA 57.698 47.619 0.00 0.00 0.00 3.18
4617 4738 3.634504 TGCATAGTACTCCCTCCGTAAA 58.365 45.455 0.00 0.00 0.00 2.01
4618 4739 3.382546 TGCATAGTACTCCCTCCGTAAAC 59.617 47.826 0.00 0.00 0.00 2.01
4619 4740 3.635836 GCATAGTACTCCCTCCGTAAACT 59.364 47.826 0.00 0.00 0.00 2.66
4620 4741 4.823989 GCATAGTACTCCCTCCGTAAACTA 59.176 45.833 0.00 0.00 0.00 2.24
4621 4742 5.300286 GCATAGTACTCCCTCCGTAAACTAA 59.700 44.000 0.00 0.00 0.00 2.24
4622 4743 6.015603 GCATAGTACTCCCTCCGTAAACTAAT 60.016 42.308 0.00 0.00 0.00 1.73
4623 4744 7.175641 GCATAGTACTCCCTCCGTAAACTAATA 59.824 40.741 0.00 0.00 0.00 0.98
4624 4745 9.240734 CATAGTACTCCCTCCGTAAACTAATAT 57.759 37.037 0.00 0.00 0.00 1.28
4627 4748 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
4628 4749 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
4629 4750 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4630 4751 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4631 4752 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
4632 4753 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
4633 4754 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
4634 4755 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
4684 4805 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
4723 4845 2.224066 ACTGAAGTGACTCCGAAACTGG 60.224 50.000 0.00 0.00 0.00 4.00
4739 4886 0.734889 CTGGCCACGGTGATGATTTC 59.265 55.000 10.28 0.00 0.00 2.17
4843 4996 2.310233 GCGCAGAAGCTCAACACGA 61.310 57.895 0.30 0.00 39.10 4.35
4887 5040 1.942657 CATGAGATTTACAGGGGTGCG 59.057 52.381 0.00 0.00 0.00 5.34
4917 5070 2.930562 AAGGCCTCTGCGGTCCTT 60.931 61.111 5.23 9.59 41.51 3.36
4920 5073 2.435059 GCCTCTGCGGTCCTTGAC 60.435 66.667 0.00 0.00 34.25 3.18
4970 5128 1.600076 AGCACAGCACAGCAAGGAG 60.600 57.895 0.00 0.00 0.00 3.69
5004 5162 5.590663 GCAAATAAGTAGGGAGAGGGAAAAG 59.409 44.000 0.00 0.00 0.00 2.27
5012 5170 3.268072 AGGGAGAGGGAAAAGGAATCAAG 59.732 47.826 0.00 0.00 0.00 3.02
5077 5236 5.299028 TCTCTCTTGAGAGTAGCAGCAATAG 59.701 44.000 22.34 2.48 43.73 1.73
5080 5239 5.655488 TCTTGAGAGTAGCAGCAATAGTTC 58.345 41.667 0.00 0.00 0.00 3.01
5147 5307 2.815647 CCCTTTCGCCGTCAGAGC 60.816 66.667 0.00 0.00 0.00 4.09
5230 5390 3.687060 TATTGGCGTCGTGTCCCACTG 62.687 57.143 0.00 0.00 31.34 3.66
5233 5393 2.970639 CGTCGTGTCCCACTGGAT 59.029 61.111 0.00 0.00 44.28 3.41
5330 5491 4.090057 GCAGCTGGTTCGCCGTTC 62.090 66.667 17.12 0.00 41.18 3.95
5397 5565 2.042639 CCTGGGCCTGGGAAATGG 60.043 66.667 21.11 0.00 0.00 3.16
5402 5570 0.335019 GGGCCTGGGAAATGGTAAGT 59.665 55.000 0.84 0.00 0.00 2.24
5403 5571 1.567175 GGGCCTGGGAAATGGTAAGTA 59.433 52.381 0.84 0.00 0.00 2.24
5404 5572 2.651455 GGCCTGGGAAATGGTAAGTAC 58.349 52.381 0.00 0.00 0.00 2.73
5405 5573 2.285977 GCCTGGGAAATGGTAAGTACG 58.714 52.381 0.00 0.00 0.00 3.67
5406 5574 2.914059 CCTGGGAAATGGTAAGTACGG 58.086 52.381 0.00 0.00 0.00 4.02
5407 5575 2.502538 CCTGGGAAATGGTAAGTACGGA 59.497 50.000 0.00 0.00 0.00 4.69
5408 5576 3.431766 CCTGGGAAATGGTAAGTACGGAG 60.432 52.174 0.00 0.00 0.00 4.63
5436 5604 1.024579 AAGAAATAGGGTGCACGCGG 61.025 55.000 25.95 0.00 0.00 6.46
5451 5619 1.341531 ACGCGGAAGATTCTATGAGGG 59.658 52.381 12.47 0.00 0.00 4.30
5467 5635 3.276846 GGCGACGTGTGCAGGTTT 61.277 61.111 11.10 0.00 0.00 3.27
5468 5636 2.052237 GCGACGTGTGCAGGTTTG 60.052 61.111 0.00 0.00 0.00 2.93
5492 5660 2.158900 CCAATAAGAGTGGATCGTGCCT 60.159 50.000 0.00 0.00 38.54 4.75
5588 5763 3.000041 CGGCTGTTATCTTGCTTACACA 59.000 45.455 0.00 0.00 0.00 3.72
5592 5767 4.690748 GCTGTTATCTTGCTTACACAGTGA 59.309 41.667 7.81 0.00 35.17 3.41
5632 5807 4.433615 ACACATGTAAAGTCTCCGCATAG 58.566 43.478 0.00 0.00 0.00 2.23
5647 5822 2.093310 CGCATAGAGTTCAAGTGCACAG 59.907 50.000 21.04 11.41 35.63 3.66
5661 5836 0.109873 GCACAGTGCTCATCAAGTGC 60.110 55.000 18.92 0.00 45.33 4.40
5671 5846 5.922053 TGCTCATCAAGTGCATTATAGACT 58.078 37.500 0.00 0.00 41.43 3.24
5672 5847 6.351711 TGCTCATCAAGTGCATTATAGACTT 58.648 36.000 0.00 0.00 41.43 3.01
5673 5848 6.825213 TGCTCATCAAGTGCATTATAGACTTT 59.175 34.615 0.00 0.00 41.43 2.66
5674 5849 7.337689 TGCTCATCAAGTGCATTATAGACTTTT 59.662 33.333 0.00 0.00 41.43 2.27
5675 5850 8.186821 GCTCATCAAGTGCATTATAGACTTTTT 58.813 33.333 0.00 0.00 36.75 1.94
5689 5864 3.442441 TTTTTGGTGGAGCGCAGG 58.558 55.556 11.47 0.00 0.00 4.85
5690 5865 1.152860 TTTTTGGTGGAGCGCAGGA 60.153 52.632 11.47 0.00 0.00 3.86
5691 5866 0.753479 TTTTTGGTGGAGCGCAGGAA 60.753 50.000 11.47 0.00 0.00 3.36
5692 5867 0.753479 TTTTGGTGGAGCGCAGGAAA 60.753 50.000 11.47 0.00 0.00 3.13
5693 5868 0.753479 TTTGGTGGAGCGCAGGAAAA 60.753 50.000 11.47 0.00 0.00 2.29
5694 5869 0.539438 TTGGTGGAGCGCAGGAAAAT 60.539 50.000 11.47 0.00 0.00 1.82
5695 5870 0.960364 TGGTGGAGCGCAGGAAAATC 60.960 55.000 11.47 0.00 0.00 2.17
5696 5871 1.657751 GGTGGAGCGCAGGAAAATCC 61.658 60.000 11.47 6.39 36.58 3.01
5697 5872 1.378514 TGGAGCGCAGGAAAATCCC 60.379 57.895 11.47 0.00 37.19 3.85
5698 5873 2.121538 GGAGCGCAGGAAAATCCCC 61.122 63.158 11.47 0.00 37.19 4.81
5699 5874 2.438434 AGCGCAGGAAAATCCCCG 60.438 61.111 11.47 0.00 37.19 5.73
5700 5875 2.437716 GCGCAGGAAAATCCCCGA 60.438 61.111 0.30 0.00 37.19 5.14
5701 5876 2.761195 GCGCAGGAAAATCCCCGAC 61.761 63.158 0.30 0.76 37.19 4.79
5702 5877 2.112815 CGCAGGAAAATCCCCGACC 61.113 63.158 2.06 0.00 37.19 4.79
5703 5878 1.753078 GCAGGAAAATCCCCGACCC 60.753 63.158 0.00 0.00 37.19 4.46
5704 5879 1.076995 CAGGAAAATCCCCGACCCC 60.077 63.158 0.00 0.00 37.19 4.95
5705 5880 1.230182 AGGAAAATCCCCGACCCCT 60.230 57.895 0.00 0.00 37.19 4.79
5706 5881 1.226542 GGAAAATCCCCGACCCCTC 59.773 63.158 0.00 0.00 0.00 4.30
5707 5882 1.226542 GAAAATCCCCGACCCCTCC 59.773 63.158 0.00 0.00 0.00 4.30
5708 5883 1.230182 AAAATCCCCGACCCCTCCT 60.230 57.895 0.00 0.00 0.00 3.69
5709 5884 0.849540 AAAATCCCCGACCCCTCCTT 60.850 55.000 0.00 0.00 0.00 3.36
5710 5885 1.279749 AAATCCCCGACCCCTCCTTC 61.280 60.000 0.00 0.00 0.00 3.46
5711 5886 3.715848 ATCCCCGACCCCTCCTTCC 62.716 68.421 0.00 0.00 0.00 3.46
5714 5889 4.416601 CCGACCCCTCCTTCCCCT 62.417 72.222 0.00 0.00 0.00 4.79
5715 5890 2.764547 CGACCCCTCCTTCCCCTC 60.765 72.222 0.00 0.00 0.00 4.30
5716 5891 2.367107 GACCCCTCCTTCCCCTCC 60.367 72.222 0.00 0.00 0.00 4.30
5717 5892 4.040198 ACCCCTCCTTCCCCTCCC 62.040 72.222 0.00 0.00 0.00 4.30
5719 5894 4.089757 CCCTCCTTCCCCTCCCGA 62.090 72.222 0.00 0.00 0.00 5.14
5720 5895 2.764547 CCTCCTTCCCCTCCCGAC 60.765 72.222 0.00 0.00 0.00 4.79
5721 5896 2.764547 CTCCTTCCCCTCCCGACC 60.765 72.222 0.00 0.00 0.00 4.79
5722 5897 4.410033 TCCTTCCCCTCCCGACCC 62.410 72.222 0.00 0.00 0.00 4.46
5767 5942 4.195334 GCGGCCATCACCCATCCT 62.195 66.667 2.24 0.00 0.00 3.24
5768 5943 2.111878 CGGCCATCACCCATCCTC 59.888 66.667 2.24 0.00 0.00 3.71
5769 5944 2.517919 GGCCATCACCCATCCTCC 59.482 66.667 0.00 0.00 0.00 4.30
5770 5945 2.517919 GCCATCACCCATCCTCCC 59.482 66.667 0.00 0.00 0.00 4.30
5771 5946 3.138728 GCCATCACCCATCCTCCCC 62.139 68.421 0.00 0.00 0.00 4.81
5772 5947 1.386485 CCATCACCCATCCTCCCCT 60.386 63.158 0.00 0.00 0.00 4.79
5773 5948 1.422161 CCATCACCCATCCTCCCCTC 61.422 65.000 0.00 0.00 0.00 4.30
5774 5949 1.460305 ATCACCCATCCTCCCCTCG 60.460 63.158 0.00 0.00 0.00 4.63
5775 5950 2.257541 ATCACCCATCCTCCCCTCGT 62.258 60.000 0.00 0.00 0.00 4.18
5776 5951 2.041819 ACCCATCCTCCCCTCGTC 60.042 66.667 0.00 0.00 0.00 4.20
5777 5952 2.844839 CCCATCCTCCCCTCGTCC 60.845 72.222 0.00 0.00 0.00 4.79
5778 5953 2.283809 CCATCCTCCCCTCGTCCT 59.716 66.667 0.00 0.00 0.00 3.85
5779 5954 1.834822 CCATCCTCCCCTCGTCCTC 60.835 68.421 0.00 0.00 0.00 3.71
5780 5955 1.834822 CATCCTCCCCTCGTCCTCC 60.835 68.421 0.00 0.00 0.00 4.30
5781 5956 3.438615 ATCCTCCCCTCGTCCTCCG 62.439 68.421 0.00 0.00 38.13 4.63
5834 6009 4.796231 CGTCGGACGAAGGCCCTG 62.796 72.222 25.29 0.00 46.05 4.45
5835 6010 3.692406 GTCGGACGAAGGCCCTGT 61.692 66.667 0.00 0.00 0.00 4.00
5836 6011 3.691342 TCGGACGAAGGCCCTGTG 61.691 66.667 0.00 0.00 0.00 3.66
5837 6012 4.760047 CGGACGAAGGCCCTGTGG 62.760 72.222 0.00 0.00 0.00 4.17
5855 6030 4.180946 CGCGACGGACCTCCTCTG 62.181 72.222 0.00 0.00 0.00 3.35
5856 6031 3.827898 GCGACGGACCTCCTCTGG 61.828 72.222 0.00 0.00 0.00 3.86
5857 6032 3.827898 CGACGGACCTCCTCTGGC 61.828 72.222 0.00 0.00 0.00 4.85
5858 6033 3.827898 GACGGACCTCCTCTGGCG 61.828 72.222 0.00 0.00 0.00 5.69
5859 6034 4.680537 ACGGACCTCCTCTGGCGT 62.681 66.667 0.00 0.00 0.00 5.68
5860 6035 3.827898 CGGACCTCCTCTGGCGTC 61.828 72.222 0.00 0.00 0.00 5.19
5861 6036 3.462678 GGACCTCCTCTGGCGTCC 61.463 72.222 6.85 6.85 35.69 4.79
5862 6037 3.462678 GACCTCCTCTGGCGTCCC 61.463 72.222 0.00 0.00 0.00 4.46
5865 6040 3.522731 CTCCTCTGGCGTCCCGAG 61.523 72.222 9.33 9.33 34.01 4.63
5866 6041 3.997400 CTCCTCTGGCGTCCCGAGA 62.997 68.421 15.35 0.00 35.28 4.04
5867 6042 2.835431 CCTCTGGCGTCCCGAGAT 60.835 66.667 15.35 0.00 35.28 2.75
5868 6043 2.725008 CTCTGGCGTCCCGAGATC 59.275 66.667 10.36 0.00 35.28 2.75
5869 6044 1.826054 CTCTGGCGTCCCGAGATCT 60.826 63.158 10.36 0.00 35.28 2.75
5870 6045 2.069465 CTCTGGCGTCCCGAGATCTG 62.069 65.000 0.00 0.00 35.28 2.90
5871 6046 2.044352 TGGCGTCCCGAGATCTGA 60.044 61.111 0.00 0.00 0.00 3.27
5872 6047 2.069465 CTGGCGTCCCGAGATCTGAG 62.069 65.000 0.00 0.00 0.00 3.35
5873 6048 2.725008 GCGTCCCGAGATCTGAGG 59.275 66.667 0.00 3.07 0.00 3.86
5874 6049 2.725008 CGTCCCGAGATCTGAGGC 59.275 66.667 0.00 0.00 0.00 4.70
5875 6050 1.826054 CGTCCCGAGATCTGAGGCT 60.826 63.158 0.00 0.00 0.00 4.58
5876 6051 1.739049 GTCCCGAGATCTGAGGCTG 59.261 63.158 0.00 0.00 0.00 4.85
5877 6052 2.130426 TCCCGAGATCTGAGGCTGC 61.130 63.158 0.00 0.00 0.00 5.25
5878 6053 2.027314 CCGAGATCTGAGGCTGCG 59.973 66.667 0.00 0.00 0.00 5.18
5879 6054 2.027314 CGAGATCTGAGGCTGCGG 59.973 66.667 0.00 0.00 0.00 5.69
5880 6055 2.280052 GAGATCTGAGGCTGCGGC 60.280 66.667 9.72 9.72 37.82 6.53
5881 6056 4.218578 AGATCTGAGGCTGCGGCG 62.219 66.667 12.29 0.51 39.81 6.46
5894 6069 4.208686 CGGCGGCCTGACCTAGAC 62.209 72.222 18.34 0.00 35.61 2.59
5895 6070 3.075005 GGCGGCCTGACCTAGACA 61.075 66.667 12.87 0.00 35.61 3.41
5896 6071 2.435693 GGCGGCCTGACCTAGACAT 61.436 63.158 12.87 0.00 35.61 3.06
5897 6072 1.068250 GCGGCCTGACCTAGACATC 59.932 63.158 0.00 0.00 35.61 3.06
5898 6073 1.742768 CGGCCTGACCTAGACATCC 59.257 63.158 0.00 0.00 35.61 3.51
5899 6074 0.757188 CGGCCTGACCTAGACATCCT 60.757 60.000 0.00 0.00 35.61 3.24
5900 6075 1.501582 GGCCTGACCTAGACATCCTT 58.498 55.000 0.00 0.00 34.51 3.36
5901 6076 1.139853 GGCCTGACCTAGACATCCTTG 59.860 57.143 0.00 0.00 34.51 3.61
5902 6077 1.474143 GCCTGACCTAGACATCCTTGC 60.474 57.143 0.00 0.00 0.00 4.01
5903 6078 1.833630 CCTGACCTAGACATCCTTGCA 59.166 52.381 0.00 0.00 0.00 4.08
5904 6079 2.237143 CCTGACCTAGACATCCTTGCAA 59.763 50.000 0.00 0.00 0.00 4.08
5905 6080 3.307691 CCTGACCTAGACATCCTTGCAAA 60.308 47.826 0.00 0.00 0.00 3.68
5906 6081 3.937706 CTGACCTAGACATCCTTGCAAAG 59.062 47.826 0.00 0.00 45.69 2.77
5917 6092 2.858622 TTGCAAAGAGGATGGCGAG 58.141 52.632 0.00 0.00 0.00 5.03
5918 6093 1.308069 TTGCAAAGAGGATGGCGAGC 61.308 55.000 0.00 0.00 0.00 5.03
5919 6094 1.746615 GCAAAGAGGATGGCGAGCA 60.747 57.895 0.00 0.00 0.00 4.26
5920 6095 1.712977 GCAAAGAGGATGGCGAGCAG 61.713 60.000 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.269520 CTGTCCATCATCGGCCCCAA 62.270 60.000 0.00 0.00 0.00 4.12
19 20 2.952310 TCCTCTGTACTGTCCATCATCG 59.048 50.000 0.00 0.00 0.00 3.84
200 218 2.730129 AATTGTTGGCGCCCTTCCCT 62.730 55.000 26.77 0.89 0.00 4.20
221 239 7.865530 ACTAAATGTTCCCCTTTAAAATGGT 57.134 32.000 3.34 0.00 0.00 3.55
229 247 9.596308 AATAACTTGTACTAAATGTTCCCCTTT 57.404 29.630 0.00 0.00 0.00 3.11
260 278 0.250295 CAGCCGAAGACCACCTTTGA 60.250 55.000 0.00 0.00 38.32 2.69
336 354 3.316573 GAGACCAAGACCAGCCGGG 62.317 68.421 2.18 0.00 44.81 5.73
395 413 2.203818 TGCAAAGGGGGCAAGCAT 60.204 55.556 0.00 0.00 38.54 3.79
553 573 0.741221 AAGCTTCCTTAAGAGCGGCG 60.741 55.000 0.51 0.51 34.37 6.46
563 585 1.292541 GACGACGGGAAGCTTCCTT 59.707 57.895 37.72 27.39 46.72 3.36
649 671 2.343758 GCGTGGCTCAGGTGAAGA 59.656 61.111 0.00 0.00 0.00 2.87
651 673 3.555324 TGGCGTGGCTCAGGTGAA 61.555 61.111 0.00 0.00 0.00 3.18
652 674 4.314440 GTGGCGTGGCTCAGGTGA 62.314 66.667 0.00 0.00 0.00 4.02
700 722 0.804989 CTGTCGGCATTCTGGGAAAC 59.195 55.000 0.00 0.00 0.00 2.78
701 723 0.960364 GCTGTCGGCATTCTGGGAAA 60.960 55.000 0.00 0.00 41.35 3.13
721 743 3.265791 GACTCACAGATTGCACCTTAGG 58.734 50.000 0.00 0.00 0.00 2.69
722 744 3.265791 GGACTCACAGATTGCACCTTAG 58.734 50.000 0.00 0.00 0.00 2.18
723 745 2.637382 TGGACTCACAGATTGCACCTTA 59.363 45.455 0.00 0.00 0.00 2.69
724 746 1.421268 TGGACTCACAGATTGCACCTT 59.579 47.619 0.00 0.00 0.00 3.50
725 747 1.002888 CTGGACTCACAGATTGCACCT 59.997 52.381 0.00 0.00 40.97 4.00
726 748 1.271054 ACTGGACTCACAGATTGCACC 60.271 52.381 0.00 0.00 40.97 5.01
727 749 2.175878 ACTGGACTCACAGATTGCAC 57.824 50.000 0.00 0.00 40.97 4.57
728 750 2.104622 TGAACTGGACTCACAGATTGCA 59.895 45.455 0.00 0.00 40.97 4.08
729 751 2.771089 TGAACTGGACTCACAGATTGC 58.229 47.619 0.00 0.00 40.97 3.56
730 752 4.635223 TCTTGAACTGGACTCACAGATTG 58.365 43.478 0.00 0.00 40.97 2.67
731 753 4.590647 TCTCTTGAACTGGACTCACAGATT 59.409 41.667 0.00 0.00 40.97 2.40
732 754 4.155709 TCTCTTGAACTGGACTCACAGAT 58.844 43.478 0.00 0.00 40.97 2.90
733 755 3.566351 TCTCTTGAACTGGACTCACAGA 58.434 45.455 0.00 0.00 40.97 3.41
850 872 8.195165 ACTTATCTCCAGATCCAAATCGATTA 57.805 34.615 11.83 0.00 36.97 1.75
860 882 8.881262 TCCCTAAATAAACTTATCTCCAGATCC 58.119 37.037 0.00 0.00 36.05 3.36
883 905 2.632996 TGTCGATGACCCTATTCATCCC 59.367 50.000 7.38 0.64 46.37 3.85
891 913 6.238566 CGAGTAAACTAATGTCGATGACCCTA 60.239 42.308 0.00 0.00 32.32 3.53
913 935 3.782250 GCAACGATTCAACTGCATACGAG 60.782 47.826 0.00 0.00 34.87 4.18
915 937 2.159720 TGCAACGATTCAACTGCATACG 60.160 45.455 0.00 0.00 39.77 3.06
1069 1108 1.310933 ACGGTACTGTAGCACCCTCG 61.311 60.000 16.31 2.47 0.00 4.63
1086 1138 1.078214 ACTCCACCATGGCATCACG 60.078 57.895 13.04 0.00 37.47 4.35
1119 1171 6.004574 CACTCTGCCTGTGTATATAGGAGTA 58.995 44.000 6.45 0.00 37.37 2.59
1120 1172 4.830046 CACTCTGCCTGTGTATATAGGAGT 59.170 45.833 6.45 0.00 37.37 3.85
1121 1173 4.219507 CCACTCTGCCTGTGTATATAGGAG 59.780 50.000 6.45 1.77 37.37 3.69
1122 1174 4.152647 CCACTCTGCCTGTGTATATAGGA 58.847 47.826 6.45 0.00 37.37 2.94
1123 1175 3.306364 GCCACTCTGCCTGTGTATATAGG 60.306 52.174 0.00 0.00 38.17 2.57
1124 1176 3.321968 TGCCACTCTGCCTGTGTATATAG 59.678 47.826 0.00 0.00 33.92 1.31
1200 1252 2.359850 TTGCCGTGGCCAGACATC 60.360 61.111 5.11 0.00 41.09 3.06
1542 1597 1.152419 GAGGGGGTAGGAGAGGAGC 60.152 68.421 0.00 0.00 0.00 4.70
1558 1613 2.125350 GGAGAGCAAGCGGTGGAG 60.125 66.667 0.00 0.00 0.00 3.86
1605 1663 0.119155 TGTCCTGGGTGAGGGAGAAT 59.881 55.000 0.00 0.00 43.06 2.40
1864 1922 0.029035 GCGTCGGTGTAGATGATCGT 59.971 55.000 0.00 0.00 0.00 3.73
1953 2011 3.197790 CCCATCTGAACGCCGCTG 61.198 66.667 0.00 0.00 0.00 5.18
1966 2024 0.187851 CCGTAGTAGAGGGTCCCCAT 59.812 60.000 3.51 0.00 38.92 4.00
1977 2035 1.063166 GTCGCCGTTCCCGTAGTAG 59.937 63.158 0.00 0.00 0.00 2.57
2255 2313 0.379669 CATGATTCTTGGACCGCTGC 59.620 55.000 0.00 0.00 0.00 5.25
2279 2337 5.818678 TGTAGGCTAGACAAAAAGAGGAA 57.181 39.130 0.00 0.00 0.00 3.36
2308 2366 1.736681 GAGTGAAATGAGAGTGCTGCC 59.263 52.381 0.00 0.00 0.00 4.85
2325 2383 2.743718 CTGCGGGTCACAAGGAGT 59.256 61.111 0.00 0.00 0.00 3.85
2326 2384 2.046892 CCTGCGGGTCACAAGGAG 60.047 66.667 2.29 0.00 0.00 3.69
2327 2385 3.636231 CCCTGCGGGTCACAAGGA 61.636 66.667 11.58 0.00 38.25 3.36
2328 2386 2.690653 TTTCCCTGCGGGTCACAAGG 62.691 60.000 11.58 0.00 44.74 3.61
2330 2388 0.893270 CATTTCCCTGCGGGTCACAA 60.893 55.000 11.58 0.00 44.74 3.33
2378 2436 1.757118 TCCTTCCCTTCTATCACAGCG 59.243 52.381 0.00 0.00 0.00 5.18
2396 2454 3.636153 ATTTACCTGTCAGGCTCTTCC 57.364 47.619 19.40 0.00 39.63 3.46
2458 2516 8.723942 ATTTACCACTGACTTCATTATCAGAC 57.276 34.615 8.18 0.00 44.32 3.51
2477 2535 3.624410 CGGGCTGTAACACCTAATTTACC 59.376 47.826 0.00 0.00 0.00 2.85
2524 2582 2.286365 TTACCCTTCCAGTTGGCTTG 57.714 50.000 0.00 0.00 34.44 4.01
2547 2607 7.372714 TCTAGCGATCGCCTTATAAAATGTAA 58.627 34.615 34.89 6.05 43.17 2.41
2566 2626 8.594881 AGTACAAAATTCCATAGAATCTAGCG 57.405 34.615 0.00 0.00 42.03 4.26
2580 2646 7.348201 CGATGCTTGATCCTAGTACAAAATTC 58.652 38.462 0.00 0.00 0.00 2.17
2587 2653 4.792521 ATCCGATGCTTGATCCTAGTAC 57.207 45.455 0.00 0.00 0.00 2.73
2619 2685 4.460263 TGTTAGTTCTGGCTTTGACATGT 58.540 39.130 0.00 0.00 0.00 3.21
2626 2692 9.830975 AAATTTAACATTGTTAGTTCTGGCTTT 57.169 25.926 9.10 1.25 0.00 3.51
2663 2730 7.814107 TGATCACATATCTGCCAAAAAGAAAAC 59.186 33.333 0.00 0.00 0.00 2.43
2668 2735 7.591165 CCTATGATCACATATCTGCCAAAAAG 58.409 38.462 0.00 0.00 38.17 2.27
2674 2741 4.212143 TGCCTATGATCACATATCTGCC 57.788 45.455 0.00 0.00 38.17 4.85
2718 2785 3.781307 TTGGGATCGACTGCCCCG 61.781 66.667 15.13 0.00 44.03 5.73
2794 2866 4.698780 TCCTTGATTCAGCAAAGATGTCTG 59.301 41.667 0.00 0.00 34.22 3.51
2845 2917 2.435586 CAGCCTCTCCGCAACCTG 60.436 66.667 0.00 0.00 0.00 4.00
2848 2920 2.435059 GGACAGCCTCTCCGCAAC 60.435 66.667 0.00 0.00 0.00 4.17
2967 3039 3.503748 ACACCTGAGAATAAGCAAAGCAC 59.496 43.478 0.00 0.00 0.00 4.40
3116 3188 2.765807 CGGGGCATGAGACCTCCT 60.766 66.667 0.00 0.00 45.05 3.69
3175 3247 6.358974 AGGTGCAAAGCTTAAATACCATTT 57.641 33.333 18.49 2.41 0.00 2.32
3186 3258 1.915141 ATGCTGTAGGTGCAAAGCTT 58.085 45.000 0.00 0.00 44.01 3.74
3191 3263 7.393234 AGTTTAAATTCTATGCTGTAGGTGCAA 59.607 33.333 0.00 0.00 44.01 4.08
3200 3272 6.684555 GCTCACGAAGTTTAAATTCTATGCTG 59.315 38.462 3.71 1.22 41.61 4.41
3242 3324 6.436027 TGGAATCTATGTAGACAGGTCTCTT 58.564 40.000 5.00 0.15 40.93 2.85
3433 3521 6.265196 AGTGTGTTCCAAATCAAATGAAGCTA 59.735 34.615 0.00 0.00 0.00 3.32
3573 3661 3.642705 GCCACCAAGAACATTTTCACTC 58.357 45.455 0.00 0.00 33.72 3.51
3602 3690 1.072505 GGGAGCACGGTTTTCCAGA 59.927 57.895 9.24 0.00 40.70 3.86
3606 3694 0.237498 CGAAAGGGAGCACGGTTTTC 59.763 55.000 0.00 0.00 0.00 2.29
3653 3747 2.289444 TGGTTCCCAGTCGACTGATTTC 60.289 50.000 40.21 26.68 46.59 2.17
3662 3756 5.018539 TGTAAAGATATGGTTCCCAGTCG 57.981 43.478 0.00 0.00 36.75 4.18
3667 3761 5.066505 CACAAGCTGTAAAGATATGGTTCCC 59.933 44.000 0.00 0.00 0.00 3.97
3875 3970 0.575390 GTCGGCGATACAATGGAACG 59.425 55.000 14.79 0.00 0.00 3.95
3884 3979 4.150098 GTCAAATGGATTAGTCGGCGATAC 59.850 45.833 14.79 0.61 0.00 2.24
3910 4005 2.738139 CGCCACTGCACGATCACA 60.738 61.111 0.00 0.00 37.32 3.58
3999 4094 5.584913 AGAGAAGATACCTCCAGTTCAGAA 58.415 41.667 0.00 0.00 0.00 3.02
4198 4315 1.359848 CAAGACGGCACATAGTCCAC 58.640 55.000 0.00 0.00 0.00 4.02
4218 4335 4.020662 ACTTTTGAGCTCTCCTGGAGTAAG 60.021 45.833 22.50 14.75 43.62 2.34
4322 4439 5.182001 ACCTTCTTCTCCATGTGAATTTTCG 59.818 40.000 0.00 0.00 0.00 3.46
4395 4512 7.610305 GTCATGAGGAAAGTGGAGGTTTTATAA 59.390 37.037 0.00 0.00 0.00 0.98
4404 4521 5.121811 CCTATTGTCATGAGGAAAGTGGAG 58.878 45.833 0.00 0.00 31.45 3.86
4477 4594 1.202200 CGGTCGTTCATCTCTCTGACC 60.202 57.143 0.00 0.00 41.87 4.02
4586 4707 3.369471 GGAGTACTATGCAACAAGCCTGA 60.369 47.826 0.00 0.00 44.83 3.86
4607 4728 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
4658 4779 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
4659 4780 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
4660 4781 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
4666 4787 9.490083 ACAAGTACTCCCTCTGTAAACTAATAT 57.510 33.333 0.00 0.00 0.00 1.28
4667 4788 8.890410 ACAAGTACTCCCTCTGTAAACTAATA 57.110 34.615 0.00 0.00 0.00 0.98
4668 4789 7.674772 AGACAAGTACTCCCTCTGTAAACTAAT 59.325 37.037 0.00 0.00 0.00 1.73
4669 4790 7.008941 AGACAAGTACTCCCTCTGTAAACTAA 58.991 38.462 0.00 0.00 0.00 2.24
4670 4791 6.433404 CAGACAAGTACTCCCTCTGTAAACTA 59.567 42.308 12.94 0.00 0.00 2.24
4671 4792 5.244178 CAGACAAGTACTCCCTCTGTAAACT 59.756 44.000 12.94 0.00 0.00 2.66
4672 4793 5.243283 TCAGACAAGTACTCCCTCTGTAAAC 59.757 44.000 17.56 1.09 31.94 2.01
4673 4794 5.391256 TCAGACAAGTACTCCCTCTGTAAA 58.609 41.667 17.56 3.70 31.94 2.01
4674 4795 4.994282 TCAGACAAGTACTCCCTCTGTAA 58.006 43.478 17.56 4.20 31.94 2.41
4675 4796 4.652679 TCAGACAAGTACTCCCTCTGTA 57.347 45.455 17.56 7.69 31.94 2.74
4676 4797 3.527507 TCAGACAAGTACTCCCTCTGT 57.472 47.619 17.56 9.67 31.94 3.41
4677 4798 3.829601 AGTTCAGACAAGTACTCCCTCTG 59.170 47.826 14.23 14.23 0.00 3.35
4678 4799 3.829601 CAGTTCAGACAAGTACTCCCTCT 59.170 47.826 0.00 0.00 0.00 3.69
4679 4800 3.827302 TCAGTTCAGACAAGTACTCCCTC 59.173 47.826 0.00 0.00 0.00 4.30
4680 4801 3.845860 TCAGTTCAGACAAGTACTCCCT 58.154 45.455 0.00 0.00 0.00 4.20
4681 4802 4.039366 AGTTCAGTTCAGACAAGTACTCCC 59.961 45.833 0.00 0.00 0.00 4.30
4682 4803 4.985409 CAGTTCAGTTCAGACAAGTACTCC 59.015 45.833 0.00 0.00 0.00 3.85
4683 4804 5.833082 TCAGTTCAGTTCAGACAAGTACTC 58.167 41.667 0.00 0.00 0.00 2.59
4684 4805 5.854010 TCAGTTCAGTTCAGACAAGTACT 57.146 39.130 0.00 0.00 0.00 2.73
4723 4845 1.936547 GAGAGAAATCATCACCGTGGC 59.063 52.381 0.00 0.00 0.00 5.01
4739 4886 2.883386 GCATAAATCTGCCAAGGGAGAG 59.117 50.000 15.59 3.34 45.33 3.20
4917 5070 2.892374 CATCATGTTAGACTGCCGTCA 58.108 47.619 11.07 0.00 42.73 4.35
4920 5073 0.940126 GGCATCATGTTAGACTGCCG 59.060 55.000 0.00 0.00 42.57 5.69
4926 5079 3.318275 GTCTACTCCGGCATCATGTTAGA 59.682 47.826 0.00 0.00 0.00 2.10
4970 5128 4.095334 CCCTACTTATTTGCACCGGTAAAC 59.905 45.833 6.87 0.00 31.29 2.01
5004 5162 5.824624 TCATTATGAGCCAAGTCTTGATTCC 59.175 40.000 14.42 1.45 0.00 3.01
5012 5170 4.811024 TCGTCAATCATTATGAGCCAAGTC 59.189 41.667 0.29 0.00 0.00 3.01
5090 5249 7.041984 GCTAACTTATTGGCGCTACTCTAATTT 60.042 37.037 7.64 3.01 32.12 1.82
5092 5251 5.927115 GCTAACTTATTGGCGCTACTCTAAT 59.073 40.000 7.64 0.00 32.12 1.73
5094 5253 4.868067 GCTAACTTATTGGCGCTACTCTA 58.132 43.478 7.64 0.00 32.12 2.43
5147 5307 3.242543 GCTGACCAATTTGATGAGCTACG 60.243 47.826 0.00 0.00 0.00 3.51
5397 5565 9.962783 ATTTCTTGATGTATACTCCGTACTTAC 57.037 33.333 4.17 0.00 0.00 2.34
5402 5570 7.727186 ACCCTATTTCTTGATGTATACTCCGTA 59.273 37.037 4.17 0.00 0.00 4.02
5403 5571 6.553852 ACCCTATTTCTTGATGTATACTCCGT 59.446 38.462 4.17 0.00 0.00 4.69
5404 5572 6.868864 CACCCTATTTCTTGATGTATACTCCG 59.131 42.308 4.17 0.00 0.00 4.63
5405 5573 6.651225 GCACCCTATTTCTTGATGTATACTCC 59.349 42.308 4.17 0.00 0.00 3.85
5406 5574 7.171678 GTGCACCCTATTTCTTGATGTATACTC 59.828 40.741 5.22 0.36 0.00 2.59
5407 5575 6.992715 GTGCACCCTATTTCTTGATGTATACT 59.007 38.462 5.22 0.00 0.00 2.12
5408 5576 6.073765 CGTGCACCCTATTTCTTGATGTATAC 60.074 42.308 12.15 0.00 0.00 1.47
5409 5577 5.989168 CGTGCACCCTATTTCTTGATGTATA 59.011 40.000 12.15 0.00 0.00 1.47
5436 5604 2.034812 ACGTCGCCCTCATAGAATCTTC 59.965 50.000 0.00 0.00 0.00 2.87
5451 5619 1.841663 ATCAAACCTGCACACGTCGC 61.842 55.000 0.00 0.00 0.00 5.19
5515 5690 4.378030 CGTCTAAGAAATCGCCACGTATAC 59.622 45.833 0.00 0.00 0.00 1.47
5588 5763 1.016130 GCGCATACTGCAGTGTCACT 61.016 55.000 29.57 0.00 45.36 3.41
5592 5767 0.460284 GTAGGCGCATACTGCAGTGT 60.460 55.000 29.57 20.69 45.36 3.55
5606 5781 3.187700 CGGAGACTTTACATGTGTAGGC 58.812 50.000 9.11 7.70 0.00 3.93
5608 5783 3.845178 TGCGGAGACTTTACATGTGTAG 58.155 45.455 9.11 8.01 0.00 2.74
5609 5784 3.945981 TGCGGAGACTTTACATGTGTA 57.054 42.857 9.11 0.00 0.00 2.90
5632 5807 3.833706 GCACTGTGCACTTGAACTC 57.166 52.632 26.70 0.00 44.26 3.01
5647 5822 5.757320 AGTCTATAATGCACTTGATGAGCAC 59.243 40.000 0.00 0.00 44.43 4.40
5672 5847 0.753479 TTCCTGCGCTCCACCAAAAA 60.753 50.000 9.73 0.00 0.00 1.94
5673 5848 0.753479 TTTCCTGCGCTCCACCAAAA 60.753 50.000 9.73 0.00 0.00 2.44
5674 5849 0.753479 TTTTCCTGCGCTCCACCAAA 60.753 50.000 9.73 0.00 0.00 3.28
5675 5850 0.539438 ATTTTCCTGCGCTCCACCAA 60.539 50.000 9.73 0.00 0.00 3.67
5676 5851 0.960364 GATTTTCCTGCGCTCCACCA 60.960 55.000 9.73 0.00 0.00 4.17
5677 5852 1.657751 GGATTTTCCTGCGCTCCACC 61.658 60.000 9.73 0.00 32.53 4.61
5678 5853 1.657751 GGGATTTTCCTGCGCTCCAC 61.658 60.000 9.73 0.00 36.57 4.02
5679 5854 1.378514 GGGATTTTCCTGCGCTCCA 60.379 57.895 9.73 0.00 36.57 3.86
5680 5855 2.121538 GGGGATTTTCCTGCGCTCC 61.122 63.158 9.73 4.79 36.57 4.70
5681 5856 2.472909 CGGGGATTTTCCTGCGCTC 61.473 63.158 9.73 0.00 36.57 5.03
5682 5857 2.438434 CGGGGATTTTCCTGCGCT 60.438 61.111 9.73 0.00 36.57 5.92
5683 5858 2.437716 TCGGGGATTTTCCTGCGC 60.438 61.111 0.00 0.00 36.57 6.09
5684 5859 2.112815 GGTCGGGGATTTTCCTGCG 61.113 63.158 0.00 0.00 36.57 5.18
5685 5860 1.753078 GGGTCGGGGATTTTCCTGC 60.753 63.158 0.00 0.00 36.57 4.85
5686 5861 1.076995 GGGGTCGGGGATTTTCCTG 60.077 63.158 0.00 0.00 36.57 3.86
5687 5862 1.230182 AGGGGTCGGGGATTTTCCT 60.230 57.895 0.00 0.00 36.57 3.36
5688 5863 1.226542 GAGGGGTCGGGGATTTTCC 59.773 63.158 0.00 0.00 35.23 3.13
5689 5864 1.226542 GGAGGGGTCGGGGATTTTC 59.773 63.158 0.00 0.00 0.00 2.29
5690 5865 0.849540 AAGGAGGGGTCGGGGATTTT 60.850 55.000 0.00 0.00 0.00 1.82
5691 5866 1.230182 AAGGAGGGGTCGGGGATTT 60.230 57.895 0.00 0.00 0.00 2.17
5692 5867 1.693103 GAAGGAGGGGTCGGGGATT 60.693 63.158 0.00 0.00 0.00 3.01
5693 5868 2.040779 GAAGGAGGGGTCGGGGAT 60.041 66.667 0.00 0.00 0.00 3.85
5694 5869 4.410033 GGAAGGAGGGGTCGGGGA 62.410 72.222 0.00 0.00 0.00 4.81
5697 5872 4.416601 AGGGGAAGGAGGGGTCGG 62.417 72.222 0.00 0.00 0.00 4.79
5698 5873 2.764547 GAGGGGAAGGAGGGGTCG 60.765 72.222 0.00 0.00 0.00 4.79
5699 5874 2.367107 GGAGGGGAAGGAGGGGTC 60.367 72.222 0.00 0.00 0.00 4.46
5700 5875 4.040198 GGGAGGGGAAGGAGGGGT 62.040 72.222 0.00 0.00 0.00 4.95
5702 5877 4.089757 TCGGGAGGGGAAGGAGGG 62.090 72.222 0.00 0.00 0.00 4.30
5703 5878 2.764547 GTCGGGAGGGGAAGGAGG 60.765 72.222 0.00 0.00 0.00 4.30
5704 5879 2.764547 GGTCGGGAGGGGAAGGAG 60.765 72.222 0.00 0.00 0.00 3.69
5705 5880 4.410033 GGGTCGGGAGGGGAAGGA 62.410 72.222 0.00 0.00 0.00 3.36
5750 5925 4.195334 AGGATGGGTGATGGCCGC 62.195 66.667 0.00 0.00 0.00 6.53
5751 5926 2.111878 GAGGATGGGTGATGGCCG 59.888 66.667 0.00 0.00 0.00 6.13
5752 5927 2.517919 GGAGGATGGGTGATGGCC 59.482 66.667 0.00 0.00 0.00 5.36
5753 5928 2.517919 GGGAGGATGGGTGATGGC 59.482 66.667 0.00 0.00 0.00 4.40
5754 5929 1.386485 AGGGGAGGATGGGTGATGG 60.386 63.158 0.00 0.00 0.00 3.51
5755 5930 1.762522 CGAGGGGAGGATGGGTGATG 61.763 65.000 0.00 0.00 0.00 3.07
5756 5931 1.460305 CGAGGGGAGGATGGGTGAT 60.460 63.158 0.00 0.00 0.00 3.06
5757 5932 2.041922 CGAGGGGAGGATGGGTGA 60.042 66.667 0.00 0.00 0.00 4.02
5758 5933 2.365635 ACGAGGGGAGGATGGGTG 60.366 66.667 0.00 0.00 0.00 4.61
5759 5934 2.041819 GACGAGGGGAGGATGGGT 60.042 66.667 0.00 0.00 0.00 4.51
5760 5935 2.844839 GGACGAGGGGAGGATGGG 60.845 72.222 0.00 0.00 0.00 4.00
5761 5936 1.834822 GAGGACGAGGGGAGGATGG 60.835 68.421 0.00 0.00 0.00 3.51
5762 5937 1.834822 GGAGGACGAGGGGAGGATG 60.835 68.421 0.00 0.00 0.00 3.51
5763 5938 2.609920 GGAGGACGAGGGGAGGAT 59.390 66.667 0.00 0.00 0.00 3.24
5817 5992 4.796231 CAGGGCCTTCGTCCGACG 62.796 72.222 14.94 14.94 44.19 5.12
5818 5993 3.692406 ACAGGGCCTTCGTCCGAC 61.692 66.667 1.32 0.00 0.00 4.79
5819 5994 3.691342 CACAGGGCCTTCGTCCGA 61.691 66.667 1.32 0.00 0.00 4.55
5820 5995 4.760047 CCACAGGGCCTTCGTCCG 62.760 72.222 1.32 0.00 0.00 4.79
5838 6013 4.180946 CAGAGGAGGTCCGTCGCG 62.181 72.222 0.00 0.00 42.08 5.87
5839 6014 3.827898 CCAGAGGAGGTCCGTCGC 61.828 72.222 0.00 0.00 42.08 5.19
5840 6015 3.827898 GCCAGAGGAGGTCCGTCG 61.828 72.222 0.00 0.00 42.08 5.12
5841 6016 3.827898 CGCCAGAGGAGGTCCGTC 61.828 72.222 0.00 0.00 42.08 4.79
5842 6017 4.680537 ACGCCAGAGGAGGTCCGT 62.681 66.667 0.00 0.00 42.08 4.69
5843 6018 3.827898 GACGCCAGAGGAGGTCCG 61.828 72.222 0.00 0.00 42.08 4.79
5844 6019 3.462678 GGACGCCAGAGGAGGTCC 61.463 72.222 9.85 9.85 39.40 4.46
5845 6020 3.462678 GGGACGCCAGAGGAGGTC 61.463 72.222 0.00 0.00 0.00 3.85
5858 6033 1.739049 CAGCCTCAGATCTCGGGAC 59.261 63.158 13.10 5.98 0.00 4.46
5859 6034 2.130426 GCAGCCTCAGATCTCGGGA 61.130 63.158 13.10 0.00 0.00 5.14
5860 6035 2.420890 GCAGCCTCAGATCTCGGG 59.579 66.667 9.12 7.68 0.00 5.14
5861 6036 2.027314 CGCAGCCTCAGATCTCGG 59.973 66.667 0.00 0.00 0.00 4.63
5862 6037 2.027314 CCGCAGCCTCAGATCTCG 59.973 66.667 0.00 0.00 0.00 4.04
5863 6038 2.280052 GCCGCAGCCTCAGATCTC 60.280 66.667 0.00 0.00 0.00 2.75
5864 6039 4.218578 CGCCGCAGCCTCAGATCT 62.219 66.667 0.00 0.00 34.57 2.75
5877 6052 4.208686 GTCTAGGTCAGGCCGCCG 62.209 72.222 3.05 0.00 43.70 6.46
5878 6053 2.370647 GATGTCTAGGTCAGGCCGCC 62.371 65.000 0.00 0.00 43.70 6.13
5879 6054 1.068250 GATGTCTAGGTCAGGCCGC 59.932 63.158 0.00 0.00 43.70 6.53
5880 6055 0.757188 AGGATGTCTAGGTCAGGCCG 60.757 60.000 0.00 0.00 43.70 6.13
5881 6056 1.139853 CAAGGATGTCTAGGTCAGGCC 59.860 57.143 0.00 0.00 37.58 5.19
5882 6057 1.474143 GCAAGGATGTCTAGGTCAGGC 60.474 57.143 0.00 0.00 0.00 4.85
5883 6058 1.833630 TGCAAGGATGTCTAGGTCAGG 59.166 52.381 0.00 0.00 0.00 3.86
5884 6059 3.616956 TTGCAAGGATGTCTAGGTCAG 57.383 47.619 0.00 0.00 0.00 3.51
5885 6060 3.582647 TCTTTGCAAGGATGTCTAGGTCA 59.417 43.478 7.24 0.00 0.00 4.02
5886 6061 4.187694 CTCTTTGCAAGGATGTCTAGGTC 58.812 47.826 12.10 0.00 0.00 3.85
5887 6062 3.054802 CCTCTTTGCAAGGATGTCTAGGT 60.055 47.826 12.10 0.00 35.83 3.08
5888 6063 3.198635 TCCTCTTTGCAAGGATGTCTAGG 59.801 47.826 12.10 8.65 38.01 3.02
5889 6064 4.478206 TCCTCTTTGCAAGGATGTCTAG 57.522 45.455 12.10 0.00 38.01 2.43
5896 6071 0.677731 CGCCATCCTCTTTGCAAGGA 60.678 55.000 11.15 11.15 46.68 3.36
5897 6072 0.677731 TCGCCATCCTCTTTGCAAGG 60.678 55.000 1.35 1.35 35.05 3.61
5898 6073 0.731417 CTCGCCATCCTCTTTGCAAG 59.269 55.000 0.00 0.00 0.00 4.01
5899 6074 1.308069 GCTCGCCATCCTCTTTGCAA 61.308 55.000 0.00 0.00 0.00 4.08
5900 6075 1.746615 GCTCGCCATCCTCTTTGCA 60.747 57.895 0.00 0.00 0.00 4.08
5901 6076 1.712977 CTGCTCGCCATCCTCTTTGC 61.713 60.000 0.00 0.00 0.00 3.68
5902 6077 1.712977 GCTGCTCGCCATCCTCTTTG 61.713 60.000 0.00 0.00 0.00 2.77
5903 6078 1.451028 GCTGCTCGCCATCCTCTTT 60.451 57.895 0.00 0.00 0.00 2.52
5904 6079 2.188994 GCTGCTCGCCATCCTCTT 59.811 61.111 0.00 0.00 0.00 2.85
5905 6080 4.218578 CGCTGCTCGCCATCCTCT 62.219 66.667 0.00 0.00 34.21 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.