Multiple sequence alignment - TraesCS3A01G276100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G276100 chr3A 100.000 7825 0 0 1 7825 505715626 505723450 0.000000e+00 14451.0
1 TraesCS3A01G276100 chr3A 88.024 501 53 4 5642 6142 643222700 643222207 3.150000e-163 586.0
2 TraesCS3A01G276100 chr3A 90.751 346 30 2 7456 7800 506228009 506228353 1.990000e-125 460.0
3 TraesCS3A01G276100 chr3A 91.892 74 6 0 7692 7765 649772458 649772531 3.860000e-18 104.0
4 TraesCS3A01G276100 chr3B 92.422 1412 72 14 744 2144 498360054 498361441 0.000000e+00 1982.0
5 TraesCS3A01G276100 chr3B 96.068 1119 39 2 2152 3266 498361497 498362614 0.000000e+00 1818.0
6 TraesCS3A01G276100 chr3B 95.632 1099 35 7 6133 7226 498365467 498366557 0.000000e+00 1751.0
7 TraesCS3A01G276100 chr3B 96.649 746 21 2 3835 4580 498363405 498364146 0.000000e+00 1236.0
8 TraesCS3A01G276100 chr3B 92.901 817 54 3 6380 7194 498665527 498666341 0.000000e+00 1184.0
9 TraesCS3A01G276100 chr3B 97.695 564 12 1 3268 3831 498362654 498363216 0.000000e+00 968.0
10 TraesCS3A01G276100 chr3B 96.468 538 14 4 4612 5149 498364138 498364670 0.000000e+00 883.0
11 TraesCS3A01G276100 chr3B 92.971 441 28 2 7388 7825 498366754 498367194 2.380000e-179 640.0
12 TraesCS3A01G276100 chr3B 89.574 470 21 10 92 544 498355880 498356338 8.810000e-159 571.0
13 TraesCS3A01G276100 chr3B 91.317 334 29 0 7456 7789 498727495 498727828 2.570000e-124 457.0
14 TraesCS3A01G276100 chr3B 92.720 261 11 4 6972 7226 498432443 498432701 3.450000e-98 370.0
15 TraesCS3A01G276100 chr3B 92.885 253 14 4 6133 6384 498664247 498664496 1.600000e-96 364.0
16 TraesCS3A01G276100 chr3B 94.059 202 11 1 6662 6863 498726164 498726364 9.860000e-79 305.0
17 TraesCS3A01G276100 chr3B 95.699 186 8 0 6490 6675 498719734 498719919 4.590000e-77 300.0
18 TraesCS3A01G276100 chr3B 89.140 221 10 7 5426 5642 498365054 498365264 6.020000e-66 263.0
19 TraesCS3A01G276100 chr3B 95.395 152 7 0 594 745 498359873 498360024 7.840000e-60 243.0
20 TraesCS3A01G276100 chr3B 89.262 149 4 4 7245 7392 498366545 498366682 8.070000e-40 176.0
21 TraesCS3A01G276100 chr3B 94.444 54 2 1 543 596 498356984 498357036 1.810000e-11 82.4
22 TraesCS3A01G276100 chr3B 100.000 28 0 0 3062 3089 498362610 498362583 1.400000e-02 52.8
23 TraesCS3A01G276100 chr3D 92.342 1345 72 13 744 2084 382746533 382747850 0.000000e+00 1884.0
24 TraesCS3A01G276100 chr3D 93.123 1047 60 7 2152 3190 382748185 382749227 0.000000e+00 1524.0
25 TraesCS3A01G276100 chr3D 94.688 979 39 5 6248 7226 382752083 382753048 0.000000e+00 1507.0
26 TraesCS3A01G276100 chr3D 92.418 1042 53 12 4612 5642 382750591 382751617 0.000000e+00 1463.0
27 TraesCS3A01G276100 chr3D 84.016 976 99 28 3300 4244 382749293 382750242 0.000000e+00 885.0
28 TraesCS3A01G276100 chr3D 86.448 701 71 16 3902 4580 382749901 382750599 0.000000e+00 747.0
29 TraesCS3A01G276100 chr3D 92.273 440 21 8 7388 7825 382806120 382806548 5.190000e-171 612.0
30 TraesCS3A01G276100 chr3D 91.196 443 30 7 7388 7825 382753249 382753687 1.880000e-165 593.0
31 TraesCS3A01G276100 chr3D 86.028 501 48 12 2322 2819 178562697 178562216 1.160000e-142 518.0
32 TraesCS3A01G276100 chr3D 92.486 346 18 5 92 436 382745492 382745830 9.130000e-134 488.0
33 TraesCS3A01G276100 chr3D 93.038 316 14 6 434 749 382746197 382746504 9.260000e-124 455.0
34 TraesCS3A01G276100 chr3D 90.801 337 29 2 7456 7791 383110345 383110680 4.310000e-122 449.0
35 TraesCS3A01G276100 chr3D 94.981 259 7 2 6972 7226 382805689 382805945 1.220000e-107 401.0
36 TraesCS3A01G276100 chr3D 91.892 148 10 2 7245 7392 382753036 382753181 1.030000e-48 206.0
37 TraesCS3A01G276100 chr3D 85.882 170 21 3 6392 6559 383109711 383109879 2.240000e-40 178.0
38 TraesCS3A01G276100 chr3D 91.892 74 6 0 7692 7765 515230617 515230690 3.860000e-18 104.0
39 TraesCS3A01G276100 chr3D 95.238 63 3 0 6197 6259 382751933 382751995 5.000000e-17 100.0
40 TraesCS3A01G276100 chr3D 80.769 78 13 2 7715 7791 143460172 143460096 8.480000e-05 60.2
41 TraesCS3A01G276100 chr5D 93.145 496 28 3 5639 6134 100553435 100552946 0.000000e+00 723.0
42 TraesCS3A01G276100 chr2D 92.600 500 36 1 5635 6134 627584777 627585275 0.000000e+00 717.0
43 TraesCS3A01G276100 chr1D 91.952 497 29 5 5639 6134 278526883 278526397 0.000000e+00 686.0
44 TraesCS3A01G276100 chr1D 76.282 312 61 10 1000 1306 433208887 433209190 3.780000e-33 154.0
45 TraesCS3A01G276100 chr6D 90.763 498 43 2 5642 6139 431853020 431853514 0.000000e+00 662.0
46 TraesCS3A01G276100 chr4B 90.400 500 42 2 5640 6139 427323503 427323996 0.000000e+00 652.0
47 TraesCS3A01G276100 chr6A 89.216 510 45 5 5634 6142 167670031 167669531 5.150000e-176 628.0
48 TraesCS3A01G276100 chr4D 89.222 501 42 8 5640 6139 22228124 22228613 4.010000e-172 616.0
49 TraesCS3A01G276100 chr1A 88.889 504 38 10 5634 6134 546568635 546569123 8.690000e-169 604.0
50 TraesCS3A01G276100 chr1A 80.473 169 33 0 1138 1306 531603797 531603965 6.370000e-26 130.0
51 TraesCS3A01G276100 chr7A 90.476 399 37 1 2344 2741 672008889 672008491 6.960000e-145 525.0
52 TraesCS3A01G276100 chr7A 90.385 260 25 0 2482 2741 501148890 501148631 7.520000e-90 342.0
53 TraesCS3A01G276100 chr5B 86.242 298 38 2 2344 2638 507064596 507064299 3.520000e-83 320.0
54 TraesCS3A01G276100 chr5B 88.732 142 16 0 2497 2638 507044459 507044318 2.900000e-39 174.0
55 TraesCS3A01G276100 chr1B 76.358 313 59 12 1000 1306 585069022 585069325 3.780000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G276100 chr3A 505715626 505723450 7824 False 14451.000000 14451 100.0000 1 7825 1 chr3A.!!$F1 7824
1 TraesCS3A01G276100 chr3B 498355880 498367194 11314 False 884.450000 1982 93.8100 92 7825 12 chr3B.!!$F3 7733
2 TraesCS3A01G276100 chr3B 498664247 498666341 2094 False 774.000000 1184 92.8930 6133 7194 2 chr3B.!!$F4 1061
3 TraesCS3A01G276100 chr3B 498726164 498727828 1664 False 381.000000 457 92.6880 6662 7789 2 chr3B.!!$F5 1127
4 TraesCS3A01G276100 chr3D 382745492 382753687 8195 False 895.636364 1884 91.5350 92 7825 11 chr3D.!!$F2 7733
5 TraesCS3A01G276100 chr3D 382805689 382806548 859 False 506.500000 612 93.6270 6972 7825 2 chr3D.!!$F3 853
6 TraesCS3A01G276100 chr3D 383109711 383110680 969 False 313.500000 449 88.3415 6392 7791 2 chr3D.!!$F4 1399
7 TraesCS3A01G276100 chr6A 167669531 167670031 500 True 628.000000 628 89.2160 5634 6142 1 chr6A.!!$R1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 373 0.106521 AATGGCTTGTTTGGCGCTTT 59.893 45.000 7.64 0.0 35.06 3.51 F
370 376 0.249447 GGCTTGTTTGGCGCTTTCTT 60.249 50.000 7.64 0.0 0.00 2.52 F
583 1621 0.747283 CTGAGCTGTGGGCCTCATTC 60.747 60.000 9.01 10.4 43.05 2.67 F
1326 5236 1.066573 CACCATCCTCTGCTTCTTCGT 60.067 52.381 0.00 0.0 0.00 3.85 F
1897 5816 0.961019 TCCAGGCAATGAGTGTTTGC 59.039 50.000 0.00 0.0 46.82 3.68 F
2434 6626 1.203994 AGTGCATTTGATTGCTCTGCC 59.796 47.619 0.00 0.0 42.92 4.85 F
4125 8578 0.471780 TCTGTGAGCTCAGGTTGGGA 60.472 55.000 18.89 6.4 36.25 4.37 F
5387 9965 0.323725 GATCAGCCCTTTCCAGCCAA 60.324 55.000 0.00 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1257 5167 0.179065 TGATGAGCATCTTGAGCGGG 60.179 55.000 11.37 0.0 38.60 6.13 R
1402 5315 1.143073 ACAGAACTCCAAACCACCTCC 59.857 52.381 0.00 0.0 0.00 4.30 R
1572 5488 1.725641 CTGAAGGCGCACATAGAACA 58.274 50.000 10.83 0.0 0.00 3.18 R
2374 6566 2.268796 TCAGATGAGGTGGAATGGGA 57.731 50.000 0.00 0.0 0.00 4.37 R
3435 7669 0.529378 CATGAAACAGCAGGGAAGGC 59.471 55.000 0.00 0.0 0.00 4.35 R
4244 8697 2.034558 GCAACAGCTAAAAGCCAGTCAA 59.965 45.455 0.00 0.0 43.77 3.18 R
5621 10241 0.035458 AACTCACAGGAGAAAGCCCG 59.965 55.000 0.00 0.0 44.26 6.13 R
7234 13497 0.034756 CTCATGGTGGGTGTGTTCGA 59.965 55.000 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.546778 CTTAGGTAGCATCTTCCTTTTCTTC 57.453 40.000 0.00 0.00 33.40 2.87
34 35 5.770685 AGGTAGCATCTTCCTTTTCTTCT 57.229 39.130 0.00 0.00 26.37 2.85
35 36 6.133253 AGGTAGCATCTTCCTTTTCTTCTT 57.867 37.500 0.00 0.00 26.37 2.52
36 37 6.176896 AGGTAGCATCTTCCTTTTCTTCTTC 58.823 40.000 0.00 0.00 26.37 2.87
37 38 5.355630 GGTAGCATCTTCCTTTTCTTCTTCC 59.644 44.000 0.00 0.00 0.00 3.46
38 39 4.006319 AGCATCTTCCTTTTCTTCTTCCG 58.994 43.478 0.00 0.00 0.00 4.30
39 40 4.003648 GCATCTTCCTTTTCTTCTTCCGA 58.996 43.478 0.00 0.00 0.00 4.55
40 41 4.455877 GCATCTTCCTTTTCTTCTTCCGAA 59.544 41.667 0.00 0.00 0.00 4.30
41 42 5.124617 GCATCTTCCTTTTCTTCTTCCGAAT 59.875 40.000 0.00 0.00 0.00 3.34
42 43 6.349694 GCATCTTCCTTTTCTTCTTCCGAATT 60.350 38.462 0.00 0.00 0.00 2.17
43 44 6.560253 TCTTCCTTTTCTTCTTCCGAATTG 57.440 37.500 0.00 0.00 0.00 2.32
44 45 5.473504 TCTTCCTTTTCTTCTTCCGAATTGG 59.526 40.000 0.00 0.00 40.09 3.16
45 46 4.725490 TCCTTTTCTTCTTCCGAATTGGT 58.275 39.130 0.00 0.00 39.52 3.67
46 47 4.760204 TCCTTTTCTTCTTCCGAATTGGTC 59.240 41.667 0.00 0.00 39.52 4.02
47 48 4.762251 CCTTTTCTTCTTCCGAATTGGTCT 59.238 41.667 0.00 0.00 39.52 3.85
48 49 5.335191 CCTTTTCTTCTTCCGAATTGGTCTG 60.335 44.000 0.00 0.00 39.52 3.51
49 50 3.334583 TCTTCTTCCGAATTGGTCTGG 57.665 47.619 0.00 0.00 39.52 3.86
50 51 2.637872 TCTTCTTCCGAATTGGTCTGGT 59.362 45.455 0.00 0.00 39.52 4.00
51 52 3.835978 TCTTCTTCCGAATTGGTCTGGTA 59.164 43.478 0.00 0.00 39.52 3.25
52 53 3.887621 TCTTCCGAATTGGTCTGGTAG 57.112 47.619 0.00 0.00 39.52 3.18
53 54 2.093658 TCTTCCGAATTGGTCTGGTAGC 60.094 50.000 0.00 0.00 39.52 3.58
54 55 1.271856 TCCGAATTGGTCTGGTAGCA 58.728 50.000 0.00 0.00 39.52 3.49
55 56 1.837439 TCCGAATTGGTCTGGTAGCAT 59.163 47.619 0.00 0.00 39.52 3.79
56 57 2.158957 TCCGAATTGGTCTGGTAGCATC 60.159 50.000 0.00 0.00 39.52 3.91
57 58 2.158900 CCGAATTGGTCTGGTAGCATCT 60.159 50.000 0.00 0.00 35.03 2.90
58 59 3.535561 CGAATTGGTCTGGTAGCATCTT 58.464 45.455 0.00 0.00 35.03 2.40
59 60 3.557595 CGAATTGGTCTGGTAGCATCTTC 59.442 47.826 0.00 0.00 35.03 2.87
60 61 4.681781 CGAATTGGTCTGGTAGCATCTTCT 60.682 45.833 0.00 0.00 35.03 2.85
61 62 5.451937 CGAATTGGTCTGGTAGCATCTTCTA 60.452 44.000 0.00 0.00 35.03 2.10
62 63 6.506538 AATTGGTCTGGTAGCATCTTCTAT 57.493 37.500 0.00 0.00 35.03 1.98
63 64 5.537300 TTGGTCTGGTAGCATCTTCTATC 57.463 43.478 0.00 0.00 35.03 2.08
64 65 4.546674 TGGTCTGGTAGCATCTTCTATCA 58.453 43.478 0.00 0.00 0.00 2.15
65 66 5.150715 TGGTCTGGTAGCATCTTCTATCAT 58.849 41.667 0.00 0.00 30.07 2.45
66 67 5.604231 TGGTCTGGTAGCATCTTCTATCATT 59.396 40.000 0.00 0.00 30.07 2.57
67 68 5.931146 GGTCTGGTAGCATCTTCTATCATTG 59.069 44.000 0.00 0.00 30.07 2.82
68 69 6.239430 GGTCTGGTAGCATCTTCTATCATTGA 60.239 42.308 0.00 0.00 30.07 2.57
69 70 7.212976 GTCTGGTAGCATCTTCTATCATTGAA 58.787 38.462 0.00 0.00 30.07 2.69
70 71 7.877097 GTCTGGTAGCATCTTCTATCATTGAAT 59.123 37.037 0.00 0.00 30.07 2.57
71 72 8.435187 TCTGGTAGCATCTTCTATCATTGAATT 58.565 33.333 0.00 0.00 30.07 2.17
72 73 8.387190 TGGTAGCATCTTCTATCATTGAATTG 57.613 34.615 0.00 0.00 0.00 2.32
73 74 7.040892 TGGTAGCATCTTCTATCATTGAATTGC 60.041 37.037 8.10 8.10 35.02 3.56
74 75 6.954487 AGCATCTTCTATCATTGAATTGCA 57.046 33.333 14.75 0.00 36.14 4.08
75 76 7.342769 AGCATCTTCTATCATTGAATTGCAA 57.657 32.000 0.00 0.00 41.53 4.08
76 77 7.426410 AGCATCTTCTATCATTGAATTGCAAG 58.574 34.615 4.94 0.00 40.42 4.01
77 78 7.284716 AGCATCTTCTATCATTGAATTGCAAGA 59.715 33.333 4.94 0.00 40.42 3.02
78 79 7.378995 GCATCTTCTATCATTGAATTGCAAGAC 59.621 37.037 4.94 1.83 40.42 3.01
79 80 8.622157 CATCTTCTATCATTGAATTGCAAGACT 58.378 33.333 4.94 0.00 40.42 3.24
80 81 7.982224 TCTTCTATCATTGAATTGCAAGACTG 58.018 34.615 4.94 0.00 40.42 3.51
81 82 7.609146 TCTTCTATCATTGAATTGCAAGACTGT 59.391 33.333 4.94 0.00 40.42 3.55
82 83 8.791327 TTCTATCATTGAATTGCAAGACTGTA 57.209 30.769 4.94 0.00 40.42 2.74
83 84 8.969260 TCTATCATTGAATTGCAAGACTGTAT 57.031 30.769 4.94 0.00 40.42 2.29
86 87 7.019774 TCATTGAATTGCAAGACTGTATAGC 57.980 36.000 4.94 0.00 40.42 2.97
87 88 6.598850 TCATTGAATTGCAAGACTGTATAGCA 59.401 34.615 4.94 0.00 40.42 3.49
88 89 5.801350 TGAATTGCAAGACTGTATAGCAC 57.199 39.130 4.94 0.00 34.56 4.40
89 90 4.329801 TGAATTGCAAGACTGTATAGCACG 59.670 41.667 4.94 0.00 34.56 5.34
90 91 3.313012 TTGCAAGACTGTATAGCACGT 57.687 42.857 0.00 0.00 34.56 4.49
97 98 6.201044 GCAAGACTGTATAGCACGTATTGAAT 59.799 38.462 0.00 0.00 36.17 2.57
142 143 2.154427 AAACGAAAAGCGGCGAGACG 62.154 55.000 12.98 10.82 46.49 4.18
315 317 0.667792 GATCACCGAGGCGCTATTCC 60.668 60.000 7.64 0.00 0.00 3.01
320 322 1.488261 CCGAGGCGCTATTCCGTTTC 61.488 60.000 7.64 0.00 0.00 2.78
334 336 1.888736 GTTTCGTAGCGGAGAGGGT 59.111 57.895 0.00 0.00 0.00 4.34
357 359 3.064324 GCGGAGGCAATGGCTTGT 61.064 61.111 11.53 0.00 38.98 3.16
367 373 0.106521 AATGGCTTGTTTGGCGCTTT 59.893 45.000 7.64 0.00 35.06 3.51
368 374 0.319813 ATGGCTTGTTTGGCGCTTTC 60.320 50.000 7.64 0.00 35.06 2.62
369 375 1.363807 GGCTTGTTTGGCGCTTTCT 59.636 52.632 7.64 0.00 0.00 2.52
370 376 0.249447 GGCTTGTTTGGCGCTTTCTT 60.249 50.000 7.64 0.00 0.00 2.52
379 385 2.096594 CGCTTTCTTTCGCTCGCC 59.903 61.111 0.00 0.00 0.00 5.54
551 1589 3.444916 CTCGCTTCCGCTTAACTAATCA 58.555 45.455 0.00 0.00 0.00 2.57
583 1621 0.747283 CTGAGCTGTGGGCCTCATTC 60.747 60.000 9.01 10.40 43.05 2.67
599 4476 4.082571 CCTCATTCCCAATTCTGTGACAAC 60.083 45.833 0.00 0.00 0.00 3.32
600 4477 3.501828 TCATTCCCAATTCTGTGACAACG 59.498 43.478 0.00 0.00 0.00 4.10
635 4512 2.724839 GCCGAGTTGCAATTTACGACAG 60.725 50.000 0.59 0.00 0.00 3.51
694 4571 6.959311 CACACACATAATAACCTCGTAAAAGC 59.041 38.462 0.00 0.00 0.00 3.51
715 4592 2.960129 GAGATTACACCCCGCGCG 60.960 66.667 25.67 25.67 0.00 6.86
809 4719 2.273557 CAGGGGTACATCCGTAAAACG 58.726 52.381 0.00 0.00 42.11 3.60
927 4837 4.154347 GCAGGACAGAGCGGGAGG 62.154 72.222 0.00 0.00 0.00 4.30
928 4838 3.465403 CAGGACAGAGCGGGAGGG 61.465 72.222 0.00 0.00 0.00 4.30
929 4839 3.673597 AGGACAGAGCGGGAGGGA 61.674 66.667 0.00 0.00 0.00 4.20
930 4840 3.151022 GGACAGAGCGGGAGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
931 4841 3.151022 GACAGAGCGGGAGGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
1176 5086 2.743928 CTGGAGCAGACGTTGGCC 60.744 66.667 0.00 0.00 32.44 5.36
1310 5220 3.956314 GCCCACCGGGTAACACCA 61.956 66.667 6.32 0.00 46.51 4.17
1326 5236 1.066573 CACCATCCTCTGCTTCTTCGT 60.067 52.381 0.00 0.00 0.00 3.85
1327 5237 1.625818 ACCATCCTCTGCTTCTTCGTT 59.374 47.619 0.00 0.00 0.00 3.85
1351 5264 3.791539 CTCATCGCTGAGTGGCAC 58.208 61.111 10.29 10.29 43.35 5.01
1353 5266 3.190849 CATCGCTGAGTGGCACGG 61.191 66.667 12.71 7.89 0.00 4.94
1402 5315 1.135689 GGCTGGAAATTGCGTAGTGTG 60.136 52.381 0.00 0.00 0.00 3.82
1572 5488 2.146920 TTTTCCTCACCGGGTTGTTT 57.853 45.000 6.32 0.00 0.00 2.83
1584 5500 2.664424 CGGGTTGTTTGTTCTATGTGCG 60.664 50.000 0.00 0.00 0.00 5.34
1721 5638 3.054878 ACGTCACATACTGTTCGGTTTC 58.945 45.455 0.00 0.00 32.27 2.78
1825 5742 4.397481 ACCTACTTGTCGGGCTTATTAC 57.603 45.455 0.00 0.00 0.00 1.89
1897 5816 0.961019 TCCAGGCAATGAGTGTTTGC 59.039 50.000 0.00 0.00 46.82 3.68
1987 5908 5.104693 ACCGACACCTCAAATATTGTCCATA 60.105 40.000 0.00 0.00 35.89 2.74
2015 5936 7.951347 ATGATGTTGCCTTCTTAGAAAGAAT 57.049 32.000 2.76 0.00 45.75 2.40
2047 5968 9.575868 TGATTGGGTTATACTTTTGTTTCTACA 57.424 29.630 0.00 0.00 0.00 2.74
2075 5996 7.426929 TGTTTGAGACTGAAAAATCTAGAGC 57.573 36.000 0.00 0.00 0.00 4.09
2223 6415 9.683870 ATTATCTCTTTCTGAAATCTTCTGCTT 57.316 29.630 2.88 0.00 0.00 3.91
2252 6444 4.287067 TCCTCTGCTTTAATGACTTGTCCT 59.713 41.667 0.00 0.00 0.00 3.85
2374 6566 4.702131 GCTGTCCAACAATATGAAGAGGTT 59.298 41.667 0.00 0.00 0.00 3.50
2434 6626 1.203994 AGTGCATTTGATTGCTCTGCC 59.796 47.619 0.00 0.00 42.92 4.85
2458 6650 7.773690 GCCAAGTCCCTTGTATTAGATTTCTTA 59.226 37.037 3.53 0.00 39.58 2.10
2840 7033 9.136323 GAAATTCCCTGTTCATCTTAATATGGT 57.864 33.333 1.41 0.00 0.00 3.55
2874 7067 7.020827 TCTCACATTTTATTCCTCTGAACCT 57.979 36.000 0.00 0.00 32.13 3.50
2889 7082 9.225682 TCCTCTGAACCTACTTATTAATTGGAT 57.774 33.333 0.00 0.00 0.00 3.41
3112 7306 7.059202 TGATGTGATAGATATGCTTGTCAGT 57.941 36.000 0.00 0.00 0.00 3.41
3119 7313 8.518702 TGATAGATATGCTTGTCAGTACTCATC 58.481 37.037 0.00 0.00 0.00 2.92
3259 7453 9.561270 GAAAAGTAATCTTTCTAAACATGCTCC 57.439 33.333 0.00 0.00 42.26 4.70
3266 7460 6.064060 TCTTTCTAAACATGCTCCATATGGG 58.936 40.000 21.78 13.13 35.41 4.00
3290 7522 7.386851 GGAGATGCCTATAAAACTGCAGTATA 58.613 38.462 22.01 16.62 37.12 1.47
3435 7669 3.370978 ACCACGATAAGTTGCGATCTTTG 59.629 43.478 6.92 0.00 0.00 2.77
3470 7704 4.454728 TTCATGGCAACTTATTTCCTGC 57.545 40.909 0.00 0.00 37.61 4.85
3507 7741 7.577979 TGGTGTTACTTTAAGCATCGTTTTAG 58.422 34.615 0.00 0.00 0.00 1.85
3663 7905 3.864789 ATAATCTGGCCTCACCGAATT 57.135 42.857 3.32 0.00 43.94 2.17
3877 8304 5.525012 TGAATGCTTATCACTGGAGAATTCG 59.475 40.000 0.00 0.00 0.00 3.34
3951 8404 7.788026 TGTATCGTTATAATCTCAACCCACTT 58.212 34.615 0.00 0.00 0.00 3.16
4045 8498 3.813166 TCGAGGCTTCTTTTAACCTTGTG 59.187 43.478 0.00 0.00 35.51 3.33
4125 8578 0.471780 TCTGTGAGCTCAGGTTGGGA 60.472 55.000 18.89 6.40 36.25 4.37
4252 8705 7.315142 TCATCTTAAACATTTCATTGACTGGC 58.685 34.615 0.00 0.00 0.00 4.85
4288 8741 5.564259 GCCATTTCCTATGCATTCTGATGAC 60.564 44.000 3.54 0.00 35.16 3.06
4311 8764 6.896883 ACGGCCTTAATCTTTTAGGTTATCT 58.103 36.000 0.00 0.00 0.00 1.98
4387 8888 2.124151 ACATTGGCTGGCGGGATC 60.124 61.111 0.00 0.00 0.00 3.36
4570 9071 2.023673 CTTTTGCACCTTGTCCAGTCA 58.976 47.619 0.00 0.00 0.00 3.41
4571 9072 2.363306 TTTGCACCTTGTCCAGTCAT 57.637 45.000 0.00 0.00 0.00 3.06
4572 9073 3.500448 TTTGCACCTTGTCCAGTCATA 57.500 42.857 0.00 0.00 0.00 2.15
4573 9074 3.719268 TTGCACCTTGTCCAGTCATAT 57.281 42.857 0.00 0.00 0.00 1.78
4574 9075 4.835284 TTGCACCTTGTCCAGTCATATA 57.165 40.909 0.00 0.00 0.00 0.86
4575 9076 5.372343 TTGCACCTTGTCCAGTCATATAT 57.628 39.130 0.00 0.00 0.00 0.86
4576 9077 6.493189 TTGCACCTTGTCCAGTCATATATA 57.507 37.500 0.00 0.00 0.00 0.86
4577 9078 6.686484 TGCACCTTGTCCAGTCATATATAT 57.314 37.500 0.00 0.00 0.00 0.86
4578 9079 7.790782 TGCACCTTGTCCAGTCATATATATA 57.209 36.000 0.00 0.00 0.00 0.86
4579 9080 8.379428 TGCACCTTGTCCAGTCATATATATAT 57.621 34.615 0.00 0.00 0.00 0.86
4580 9081 9.487442 TGCACCTTGTCCAGTCATATATATATA 57.513 33.333 4.90 4.92 0.00 0.86
5092 9602 8.923609 AGATATAATCTAGATTGCGTGACATG 57.076 34.615 25.22 0.00 38.00 3.21
5104 9614 3.678072 TGCGTGACATGCTTACTCTAAAC 59.322 43.478 19.96 0.00 0.00 2.01
5192 9770 9.673454 AAACTAAAATCAATGAGTTAACGGTTC 57.327 29.630 0.00 0.00 31.96 3.62
5193 9771 8.385898 ACTAAAATCAATGAGTTAACGGTTCA 57.614 30.769 0.00 0.00 0.00 3.18
5195 9773 5.880054 AATCAATGAGTTAACGGTTCAGG 57.120 39.130 0.00 0.00 0.00 3.86
5202 9780 4.070009 GAGTTAACGGTTCAGGATTTGGT 58.930 43.478 0.00 0.00 0.00 3.67
5215 9793 6.548321 TCAGGATTTGGTAGTATTTGGTTGT 58.452 36.000 0.00 0.00 0.00 3.32
5241 9819 3.997021 GTCTGGTCTCCATAGTTTGTGTG 59.003 47.826 0.00 0.00 30.82 3.82
5258 9836 8.194104 AGTTTGTGTGCACTGTTATTAATGAAA 58.806 29.630 19.41 0.00 0.00 2.69
5329 9907 5.393027 CCATTTTAGTTTTCTAGCGCATGGT 60.393 40.000 11.47 0.00 33.61 3.55
5336 9914 1.462616 TCTAGCGCATGGTGCAAAAT 58.537 45.000 11.47 0.00 45.36 1.82
5337 9915 2.637947 TCTAGCGCATGGTGCAAAATA 58.362 42.857 11.47 0.00 45.36 1.40
5339 9917 1.994916 AGCGCATGGTGCAAAATAAC 58.005 45.000 11.47 0.00 45.36 1.89
5341 9919 0.639756 CGCATGGTGCAAAATAACGC 59.360 50.000 2.63 0.00 45.36 4.84
5354 9932 7.527183 GTGCAAAATAACGCTTTCTGAAATTTC 59.473 33.333 11.41 11.41 0.00 2.17
5363 9941 5.105063 GCTTTCTGAAATTTCCTGTATGCC 58.895 41.667 15.48 0.00 0.00 4.40
5387 9965 0.323725 GATCAGCCCTTTCCAGCCAA 60.324 55.000 0.00 0.00 0.00 4.52
5404 9982 5.163683 CCAGCCAACTCAGAAGTTTATCATG 60.164 44.000 0.00 0.00 43.28 3.07
5417 9995 9.768662 AGAAGTTTATCATGAACTTTGCAAATT 57.231 25.926 13.23 3.91 44.81 1.82
5429 10007 7.669722 TGAACTTTGCAAATTATAAGGGTCTCT 59.330 33.333 13.23 0.00 0.00 3.10
5435 10013 9.778741 TTGCAAATTATAAGGGTCTCTAGTATG 57.221 33.333 0.00 0.00 0.00 2.39
5473 10090 2.026262 GGCTACTGGATTTGGACCTTGA 60.026 50.000 0.00 0.00 0.00 3.02
5500 10117 2.615493 CCAGACTCCCACTACGCAAAAT 60.615 50.000 0.00 0.00 0.00 1.82
5504 10121 5.354234 CAGACTCCCACTACGCAAAATAAAT 59.646 40.000 0.00 0.00 0.00 1.40
5505 10122 6.537301 CAGACTCCCACTACGCAAAATAAATA 59.463 38.462 0.00 0.00 0.00 1.40
5506 10123 7.065324 CAGACTCCCACTACGCAAAATAAATAA 59.935 37.037 0.00 0.00 0.00 1.40
5507 10124 7.608761 AGACTCCCACTACGCAAAATAAATAAA 59.391 33.333 0.00 0.00 0.00 1.40
5508 10125 8.113173 ACTCCCACTACGCAAAATAAATAAAA 57.887 30.769 0.00 0.00 0.00 1.52
5509 10126 8.578151 ACTCCCACTACGCAAAATAAATAAAAA 58.422 29.630 0.00 0.00 0.00 1.94
5555 10173 0.902516 ACTCTGCTCACTGTCCCCTC 60.903 60.000 0.00 0.00 0.00 4.30
5621 10241 8.633075 TGTTCTGTCTTTCAATGAAATGAAAC 57.367 30.769 9.02 9.74 42.68 2.78
5625 10245 4.385748 GTCTTTCAATGAAATGAAACGGGC 59.614 41.667 9.02 0.00 42.68 6.13
5659 10279 2.128771 TAGAGCAACTCCAATTGGGC 57.871 50.000 24.29 18.54 36.21 5.36
5722 10342 1.862602 GAAAAGTCGGCCCAACGCAT 61.863 55.000 0.00 0.00 40.31 4.73
5742 10362 3.322706 GACCCAAATGGACGTGCGC 62.323 63.158 0.00 0.00 37.39 6.09
5745 10365 2.096406 CAAATGGACGTGCGCTCG 59.904 61.111 28.17 28.17 0.00 5.03
5758 10378 2.737376 GCTCGTTTTCGTCCGCCT 60.737 61.111 0.00 0.00 44.46 5.52
5760 10380 1.663702 CTCGTTTTCGTCCGCCTGT 60.664 57.895 0.00 0.00 44.46 4.00
5783 10403 1.685355 CCCATTCCCGGCCCATTTTC 61.685 60.000 0.00 0.00 0.00 2.29
5787 10407 3.518068 CCCGGCCCATTTTCGAGC 61.518 66.667 0.00 0.00 0.00 5.03
5794 10414 1.102978 CCCATTTTCGAGCCGGATTT 58.897 50.000 5.05 0.00 0.00 2.17
5819 10439 2.126071 CGCGGACACAAGACGGAT 60.126 61.111 0.00 0.00 0.00 4.18
5842 10462 2.982744 GCGTGCTTGCCCTCTTTCC 61.983 63.158 0.00 0.00 0.00 3.13
5849 10469 2.124507 TTGCCCTCTTTCCTCACCGG 62.125 60.000 0.00 0.00 0.00 5.28
5854 10474 2.227089 CTCTTTCCTCACCGGACCCG 62.227 65.000 9.46 0.66 42.97 5.28
5871 10491 2.672996 GCTGGTCGGTGGCACATT 60.673 61.111 20.82 0.00 44.52 2.71
5872 10492 2.981560 GCTGGTCGGTGGCACATTG 61.982 63.158 20.82 8.68 44.52 2.82
5873 10493 2.282110 TGGTCGGTGGCACATTGG 60.282 61.111 20.82 5.45 44.52 3.16
5884 10504 0.743097 GCACATTGGATTGGCCTCTC 59.257 55.000 3.32 0.00 37.63 3.20
5887 10507 1.572415 ACATTGGATTGGCCTCTCCAT 59.428 47.619 22.57 12.78 46.04 3.41
5896 10516 4.314522 TTGGCCTCTCCATATCAAACAA 57.685 40.909 3.32 0.00 46.04 2.83
5905 10525 4.331968 TCCATATCAAACAACACACCCTC 58.668 43.478 0.00 0.00 0.00 4.30
5928 10551 3.257561 CCTGCTTCGTCGCCGATG 61.258 66.667 0.00 0.00 43.80 3.84
5973 10655 9.512435 GATAAAAAGATAGTTCTAGCGTACACA 57.488 33.333 0.00 0.00 0.00 3.72
5974 10656 7.813852 AAAAAGATAGTTCTAGCGTACACAG 57.186 36.000 0.00 0.00 0.00 3.66
5975 10657 5.502153 AAGATAGTTCTAGCGTACACAGG 57.498 43.478 0.00 0.00 0.00 4.00
6007 10689 1.612463 ACCAACTACTCGTCGCTTTCT 59.388 47.619 0.00 0.00 0.00 2.52
6033 10715 2.287668 CCGACTCGGTAATGTCATCCTC 60.288 54.545 9.51 0.00 42.73 3.71
6080 10762 0.456995 CTGCTCGTCTTCGAAGTCCC 60.457 60.000 23.85 12.44 45.61 4.46
6089 10771 2.424705 TTCGAAGTCCCAACCCGACG 62.425 60.000 0.00 0.00 35.33 5.12
6096 10778 2.025418 CCCAACCCGACGTTTCTCG 61.025 63.158 0.00 0.00 46.00 4.04
6120 10802 3.005155 AGCTTCAGTTTCAATTGAGTGGC 59.995 43.478 8.41 7.66 0.00 5.01
6134 10816 4.634703 TGGCCTGCTTCCGCGAAA 62.635 61.111 8.23 0.00 39.65 3.46
6175 10859 8.481641 CCATGACACAAAATTCATTAATATGCG 58.518 33.333 0.00 0.00 29.64 4.73
6176 10860 9.022915 CATGACACAAAATTCATTAATATGCGT 57.977 29.630 0.00 0.00 29.64 5.24
6177 10861 8.392124 TGACACAAAATTCATTAATATGCGTG 57.608 30.769 0.00 0.00 0.00 5.34
6188 10872 8.202745 TCATTAATATGCGTGTGTGTTCATTA 57.797 30.769 0.00 0.00 0.00 1.90
6266 11049 8.919777 ACCTGTAGAAACTTTATTAAGCAAGT 57.080 30.769 0.00 0.00 34.60 3.16
6267 11050 8.784043 ACCTGTAGAAACTTTATTAAGCAAGTG 58.216 33.333 3.44 0.00 33.38 3.16
6309 11092 0.104120 CAGGACGCCGGATATGTCAA 59.896 55.000 5.05 0.00 34.32 3.18
6448 12267 5.042463 TGACCTTCAACAACCAATGACTA 57.958 39.130 0.00 0.00 0.00 2.59
6466 12285 5.869753 GACTACTTGTCACATGCTTGAAT 57.130 39.130 6.60 0.00 44.73 2.57
6695 12515 4.116328 TTCAGCTCCCGCGTCGAG 62.116 66.667 14.33 14.33 42.32 4.04
6828 12648 1.471684 ACAATGTCGTCGAGTAGTCCC 59.528 52.381 0.00 0.00 0.00 4.46
6873 12693 1.503994 GGCTTCTTGCTTTCGCCTC 59.496 57.895 0.00 0.00 42.39 4.70
6902 12722 6.012745 ACTTATTTTGCCATTTCTCTCCACT 58.987 36.000 0.00 0.00 0.00 4.00
6929 12805 3.126000 GCTAGTCTTGTGCCAATGAGTTC 59.874 47.826 0.00 0.00 0.00 3.01
7117 13340 7.841282 AAGGAGGGTGGTATATATATGATCG 57.159 40.000 5.44 0.00 0.00 3.69
7149 13372 9.825972 TCGAAACATTTATGATTTCTTCTGTTC 57.174 29.630 0.00 0.00 31.63 3.18
7226 13489 2.294890 CTCCTCCACCATGAGCAGT 58.705 57.895 0.00 0.00 0.00 4.40
7228 13491 1.004044 CTCCTCCACCATGAGCAGTTT 59.996 52.381 0.00 0.00 0.00 2.66
7229 13492 1.425066 TCCTCCACCATGAGCAGTTTT 59.575 47.619 0.00 0.00 0.00 2.43
7230 13493 2.158475 TCCTCCACCATGAGCAGTTTTT 60.158 45.455 0.00 0.00 0.00 1.94
7249 13512 1.835494 TTTTTCGAACACACCCACCA 58.165 45.000 0.00 0.00 0.00 4.17
7250 13513 2.060050 TTTTCGAACACACCCACCAT 57.940 45.000 0.00 0.00 0.00 3.55
7251 13514 1.313772 TTTCGAACACACCCACCATG 58.686 50.000 0.00 0.00 0.00 3.66
7252 13515 0.470341 TTCGAACACACCCACCATGA 59.530 50.000 0.00 0.00 0.00 3.07
7253 13516 0.034756 TCGAACACACCCACCATGAG 59.965 55.000 0.00 0.00 0.00 2.90
7254 13517 1.577328 CGAACACACCCACCATGAGC 61.577 60.000 0.00 0.00 0.00 4.26
7255 13518 0.537143 GAACACACCCACCATGAGCA 60.537 55.000 0.00 0.00 0.00 4.26
7256 13519 0.538057 AACACACCCACCATGAGCAG 60.538 55.000 0.00 0.00 0.00 4.24
7375 13639 1.271379 TGGAGCTAGGTTTGGACTTGC 60.271 52.381 0.00 0.00 37.04 4.01
7379 13643 1.069227 GCTAGGTTTGGACTTGCAACG 60.069 52.381 0.00 0.00 36.83 4.10
7393 13868 0.739112 GCAACGCTCTCCTCTCCTTG 60.739 60.000 0.00 0.00 0.00 3.61
7467 14014 0.402121 GGAGTCACCTTGCCCTTCTT 59.598 55.000 0.00 0.00 35.41 2.52
7647 14199 0.534412 ATGCTTCCTCCTGACTCGTG 59.466 55.000 0.00 0.00 0.00 4.35
7649 14201 1.216710 CTTCCTCCTGACTCGTGCC 59.783 63.158 0.00 0.00 0.00 5.01
7791 14343 1.663388 TGTTACCGCACTCTGCACG 60.663 57.895 0.00 0.00 45.36 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 7.334858 AGAAGAAAAGGAAGATGCTACCTAAG 58.665 38.462 0.00 0.00 33.34 2.18
11 12 6.875972 AGAAGAAAAGGAAGATGCTACCTA 57.124 37.500 0.00 0.00 33.34 3.08
12 13 5.770685 AGAAGAAAAGGAAGATGCTACCT 57.229 39.130 0.00 0.00 35.36 3.08
13 14 5.355630 GGAAGAAGAAAAGGAAGATGCTACC 59.644 44.000 0.00 0.00 0.00 3.18
14 15 5.064071 CGGAAGAAGAAAAGGAAGATGCTAC 59.936 44.000 0.00 0.00 0.00 3.58
15 16 5.046591 TCGGAAGAAGAAAAGGAAGATGCTA 60.047 40.000 0.00 0.00 37.03 3.49
16 17 4.006319 CGGAAGAAGAAAAGGAAGATGCT 58.994 43.478 0.00 0.00 0.00 3.79
17 18 4.003648 TCGGAAGAAGAAAAGGAAGATGC 58.996 43.478 0.00 0.00 37.03 3.91
32 33 2.093658 GCTACCAGACCAATTCGGAAGA 60.094 50.000 0.00 0.00 38.63 2.87
33 34 2.280628 GCTACCAGACCAATTCGGAAG 58.719 52.381 0.00 0.00 38.63 3.46
34 35 1.626321 TGCTACCAGACCAATTCGGAA 59.374 47.619 0.00 0.00 38.63 4.30
35 36 1.271856 TGCTACCAGACCAATTCGGA 58.728 50.000 1.54 0.00 38.63 4.55
36 37 2.158900 AGATGCTACCAGACCAATTCGG 60.159 50.000 0.00 0.00 42.50 4.30
37 38 3.185246 AGATGCTACCAGACCAATTCG 57.815 47.619 0.00 0.00 0.00 3.34
38 39 4.775236 AGAAGATGCTACCAGACCAATTC 58.225 43.478 0.00 0.00 0.00 2.17
39 40 4.851639 AGAAGATGCTACCAGACCAATT 57.148 40.909 0.00 0.00 0.00 2.32
40 41 5.604231 TGATAGAAGATGCTACCAGACCAAT 59.396 40.000 0.00 0.00 0.00 3.16
41 42 4.962362 TGATAGAAGATGCTACCAGACCAA 59.038 41.667 0.00 0.00 0.00 3.67
42 43 4.546674 TGATAGAAGATGCTACCAGACCA 58.453 43.478 0.00 0.00 0.00 4.02
43 44 5.736951 ATGATAGAAGATGCTACCAGACC 57.263 43.478 0.00 0.00 0.00 3.85
44 45 6.753180 TCAATGATAGAAGATGCTACCAGAC 58.247 40.000 0.00 0.00 0.00 3.51
45 46 6.983906 TCAATGATAGAAGATGCTACCAGA 57.016 37.500 0.00 0.00 0.00 3.86
46 47 8.504815 CAATTCAATGATAGAAGATGCTACCAG 58.495 37.037 0.00 0.00 0.00 4.00
47 48 7.040892 GCAATTCAATGATAGAAGATGCTACCA 60.041 37.037 0.00 0.00 38.08 3.25
48 49 7.040892 TGCAATTCAATGATAGAAGATGCTACC 60.041 37.037 13.73 0.00 40.00 3.18
49 50 7.868775 TGCAATTCAATGATAGAAGATGCTAC 58.131 34.615 13.73 0.00 40.00 3.58
50 51 8.454570 TTGCAATTCAATGATAGAAGATGCTA 57.545 30.769 0.00 7.05 40.00 3.49
51 52 6.954487 TGCAATTCAATGATAGAAGATGCT 57.046 33.333 13.73 0.00 40.00 3.79
52 53 7.378995 GTCTTGCAATTCAATGATAGAAGATGC 59.621 37.037 0.00 0.00 39.87 3.91
53 54 8.622157 AGTCTTGCAATTCAATGATAGAAGATG 58.378 33.333 0.00 0.00 33.57 2.90
54 55 8.622157 CAGTCTTGCAATTCAATGATAGAAGAT 58.378 33.333 0.00 0.00 33.57 2.40
55 56 7.609146 ACAGTCTTGCAATTCAATGATAGAAGA 59.391 33.333 0.00 0.00 33.57 2.87
56 57 7.759465 ACAGTCTTGCAATTCAATGATAGAAG 58.241 34.615 0.00 0.00 33.57 2.85
57 58 7.692460 ACAGTCTTGCAATTCAATGATAGAA 57.308 32.000 0.00 0.00 33.57 2.10
58 59 8.969260 ATACAGTCTTGCAATTCAATGATAGA 57.031 30.769 0.00 0.00 33.57 1.98
60 61 8.777413 GCTATACAGTCTTGCAATTCAATGATA 58.223 33.333 0.00 0.00 33.57 2.15
61 62 7.283807 TGCTATACAGTCTTGCAATTCAATGAT 59.716 33.333 0.00 0.00 33.57 2.45
62 63 6.598850 TGCTATACAGTCTTGCAATTCAATGA 59.401 34.615 0.00 0.00 33.57 2.57
63 64 6.690098 GTGCTATACAGTCTTGCAATTCAATG 59.310 38.462 0.00 0.00 35.34 2.82
64 65 6.457392 CGTGCTATACAGTCTTGCAATTCAAT 60.457 38.462 0.00 0.00 35.34 2.57
65 66 5.163864 CGTGCTATACAGTCTTGCAATTCAA 60.164 40.000 0.00 0.00 35.34 2.69
66 67 4.329801 CGTGCTATACAGTCTTGCAATTCA 59.670 41.667 0.00 0.00 35.34 2.57
67 68 4.330074 ACGTGCTATACAGTCTTGCAATTC 59.670 41.667 0.00 0.00 35.34 2.17
68 69 4.253685 ACGTGCTATACAGTCTTGCAATT 58.746 39.130 0.00 0.00 35.34 2.32
69 70 3.861840 ACGTGCTATACAGTCTTGCAAT 58.138 40.909 0.00 0.00 35.34 3.56
70 71 3.313012 ACGTGCTATACAGTCTTGCAA 57.687 42.857 0.00 0.00 35.34 4.08
71 72 4.649088 ATACGTGCTATACAGTCTTGCA 57.351 40.909 0.00 0.00 0.00 4.08
72 73 5.041287 TCAATACGTGCTATACAGTCTTGC 58.959 41.667 0.00 0.00 0.00 4.01
73 74 7.700322 ATTCAATACGTGCTATACAGTCTTG 57.300 36.000 0.00 0.00 0.00 3.02
74 75 7.254455 GCAATTCAATACGTGCTATACAGTCTT 60.254 37.037 0.00 0.00 34.13 3.01
75 76 6.201044 GCAATTCAATACGTGCTATACAGTCT 59.799 38.462 0.00 0.00 34.13 3.24
76 77 6.019075 TGCAATTCAATACGTGCTATACAGTC 60.019 38.462 0.00 0.00 37.87 3.51
77 78 5.815222 TGCAATTCAATACGTGCTATACAGT 59.185 36.000 0.00 0.00 37.87 3.55
78 79 6.285790 TGCAATTCAATACGTGCTATACAG 57.714 37.500 0.00 0.00 37.87 2.74
79 80 6.536941 TCTTGCAATTCAATACGTGCTATACA 59.463 34.615 0.00 0.00 37.87 2.29
80 81 6.846283 GTCTTGCAATTCAATACGTGCTATAC 59.154 38.462 0.00 0.00 37.87 1.47
81 82 6.761242 AGTCTTGCAATTCAATACGTGCTATA 59.239 34.615 0.00 0.00 37.01 1.31
82 83 5.586243 AGTCTTGCAATTCAATACGTGCTAT 59.414 36.000 0.00 0.00 37.01 2.97
83 84 4.935205 AGTCTTGCAATTCAATACGTGCTA 59.065 37.500 0.00 0.00 37.01 3.49
84 85 3.753272 AGTCTTGCAATTCAATACGTGCT 59.247 39.130 0.00 0.00 37.01 4.40
85 86 3.848019 CAGTCTTGCAATTCAATACGTGC 59.152 43.478 0.00 0.00 37.01 5.34
86 87 5.034554 ACAGTCTTGCAATTCAATACGTG 57.965 39.130 0.00 0.00 37.01 4.49
87 88 6.985188 ATACAGTCTTGCAATTCAATACGT 57.015 33.333 0.00 0.00 37.01 3.57
88 89 7.065894 GCTATACAGTCTTGCAATTCAATACG 58.934 38.462 0.00 0.00 37.01 3.06
89 90 7.852945 GTGCTATACAGTCTTGCAATTCAATAC 59.147 37.037 0.00 0.00 35.34 1.89
90 91 7.254421 CGTGCTATACAGTCTTGCAATTCAATA 60.254 37.037 0.00 0.00 35.34 1.90
97 98 3.313012 ACGTGCTATACAGTCTTGCAA 57.687 42.857 0.00 0.00 35.34 4.08
152 153 2.118076 CCAAGAGGGCAGGGCAAA 59.882 61.111 0.00 0.00 0.00 3.68
315 317 1.226603 CCCTCTCCGCTACGAAACG 60.227 63.158 0.00 0.00 0.00 3.60
320 322 2.482333 CCTCACCCTCTCCGCTACG 61.482 68.421 0.00 0.00 0.00 3.51
334 336 2.586245 CATTGCCTCCGCTCCTCA 59.414 61.111 0.00 0.00 35.36 3.86
357 359 4.626225 GCGAAAGAAAGCGCCAAA 57.374 50.000 2.29 0.00 46.93 3.28
476 867 2.124695 GGATCGGGCCCACTGTTC 60.125 66.667 24.92 10.05 0.00 3.18
551 1589 2.158696 ACAGCTCAGCAGAAAGGAAGTT 60.159 45.455 0.00 0.00 0.00 2.66
583 1621 4.822036 TTTACGTTGTCACAGAATTGGG 57.178 40.909 0.00 0.00 0.00 4.12
587 1625 8.547967 AGTAATCATTTACGTTGTCACAGAAT 57.452 30.769 0.00 0.00 42.14 2.40
599 4476 3.369385 ACTCGGCGAGTAATCATTTACG 58.631 45.455 38.49 11.51 41.51 3.18
600 4477 4.550255 GCAACTCGGCGAGTAATCATTTAC 60.550 45.833 39.15 15.64 42.59 2.01
635 4512 3.304829 AGGAGAGAGAGAATAAGGGTGC 58.695 50.000 0.00 0.00 0.00 5.01
694 4571 0.806102 CGCGGGGTGTAATCTCACAG 60.806 60.000 0.00 0.00 39.76 3.66
715 4592 4.986708 TCCCGGGCTTTTGTGGGC 62.987 66.667 18.49 0.00 41.65 5.36
778 4688 3.291101 TACCCCTGCTCGTGAACGC 62.291 63.158 0.00 0.00 39.60 4.84
809 4719 2.558380 ATCCCCTCGCCTTTGGAAGC 62.558 60.000 0.00 0.00 0.00 3.86
932 4842 3.117171 GCGACACTGCAGCCTCTG 61.117 66.667 15.27 7.10 34.15 3.35
933 4843 3.619767 TGCGACACTGCAGCCTCT 61.620 61.111 15.27 0.00 40.62 3.69
976 4886 2.526046 AACCTCAACAGACCCCCGG 61.526 63.158 0.00 0.00 0.00 5.73
977 4887 1.302511 CAACCTCAACAGACCCCCG 60.303 63.158 0.00 0.00 0.00 5.73
978 4888 0.537371 CACAACCTCAACAGACCCCC 60.537 60.000 0.00 0.00 0.00 5.40
980 4890 1.507141 CGCACAACCTCAACAGACCC 61.507 60.000 0.00 0.00 0.00 4.46
981 4891 0.531974 TCGCACAACCTCAACAGACC 60.532 55.000 0.00 0.00 0.00 3.85
982 4892 1.195448 CATCGCACAACCTCAACAGAC 59.805 52.381 0.00 0.00 0.00 3.51
983 4893 1.511850 CATCGCACAACCTCAACAGA 58.488 50.000 0.00 0.00 0.00 3.41
984 4894 0.518636 CCATCGCACAACCTCAACAG 59.481 55.000 0.00 0.00 0.00 3.16
985 4895 1.514678 GCCATCGCACAACCTCAACA 61.515 55.000 0.00 0.00 34.03 3.33
1257 5167 0.179065 TGATGAGCATCTTGAGCGGG 60.179 55.000 11.37 0.00 38.60 6.13
1310 5220 3.057946 GCAAAAACGAAGAAGCAGAGGAT 60.058 43.478 0.00 0.00 0.00 3.24
1326 5236 2.481568 CACTCAGCGATGAGAGCAAAAA 59.518 45.455 35.32 0.00 39.14 1.94
1327 5237 2.071540 CACTCAGCGATGAGAGCAAAA 58.928 47.619 35.32 0.00 39.14 2.44
1402 5315 1.143073 ACAGAACTCCAAACCACCTCC 59.857 52.381 0.00 0.00 0.00 4.30
1561 5477 2.882137 CACATAGAACAAACAACCCGGT 59.118 45.455 0.00 0.00 0.00 5.28
1572 5488 1.725641 CTGAAGGCGCACATAGAACA 58.274 50.000 10.83 0.00 0.00 3.18
1584 5500 5.899299 AGATATTCACAAATTGCTGAAGGC 58.101 37.500 13.34 7.69 42.22 4.35
1721 5638 5.888724 TCTCTACTCATCCTCCAAACACTAG 59.111 44.000 0.00 0.00 0.00 2.57
1825 5742 6.382869 CCTTAATGGTTTGAGCCTTGATAG 57.617 41.667 0.00 0.00 0.00 2.08
1951 5872 9.760077 ATTTGAGGTGTCGGTAGTATAAAATAG 57.240 33.333 0.00 0.00 0.00 1.73
1987 5908 8.641541 TCTTTCTAAGAAGGCAACATCATTTTT 58.358 29.630 0.00 0.00 36.56 1.94
2055 5976 4.382040 CCCGCTCTAGATTTTTCAGTCTCA 60.382 45.833 0.00 0.00 0.00 3.27
2071 5992 5.353394 TGTTATCAAATACTTCCCGCTCT 57.647 39.130 0.00 0.00 0.00 4.09
2075 5996 6.479001 AGACGATTGTTATCAAATACTTCCCG 59.521 38.462 0.00 0.00 37.11 5.14
2169 6358 8.517878 CAAGATCTTTCACTTTTGGACACATAT 58.482 33.333 4.86 0.00 0.00 1.78
2170 6359 7.719193 TCAAGATCTTTCACTTTTGGACACATA 59.281 33.333 4.86 0.00 0.00 2.29
2171 6360 6.547141 TCAAGATCTTTCACTTTTGGACACAT 59.453 34.615 4.86 0.00 0.00 3.21
2172 6361 5.885352 TCAAGATCTTTCACTTTTGGACACA 59.115 36.000 4.86 0.00 0.00 3.72
2173 6362 6.377327 TCAAGATCTTTCACTTTTGGACAC 57.623 37.500 4.86 0.00 0.00 3.67
2174 6363 7.587037 ATTCAAGATCTTTCACTTTTGGACA 57.413 32.000 4.86 0.00 0.00 4.02
2223 6415 8.103305 ACAAGTCATTAAAGCAGAGGAAAGATA 58.897 33.333 0.00 0.00 0.00 1.98
2252 6444 3.643320 CCATGCTCATCCCTGAAGTAGTA 59.357 47.826 0.00 0.00 0.00 1.82
2374 6566 2.268796 TCAGATGAGGTGGAATGGGA 57.731 50.000 0.00 0.00 0.00 4.37
2889 7082 9.548631 AGCCCTAGTGCTATAAGATAATTTCTA 57.451 33.333 0.00 0.00 40.56 2.10
3112 7306 8.953313 TGACAGTAGAAAGAAATACGATGAGTA 58.047 33.333 0.00 0.00 40.03 2.59
3259 7453 6.094603 GCAGTTTTATAGGCATCTCCCATATG 59.905 42.308 0.00 0.00 34.51 1.78
3266 7460 8.091449 AGTATACTGCAGTTTTATAGGCATCTC 58.909 37.037 27.06 6.15 35.45 2.75
3290 7522 7.686434 TCCACTTTTGGCTAGAGTAATTTAGT 58.314 34.615 0.00 0.00 43.56 2.24
3408 7642 2.222213 TCGCAACTTATCGTGGTTTGTG 59.778 45.455 0.00 0.00 0.00 3.33
3435 7669 0.529378 CATGAAACAGCAGGGAAGGC 59.471 55.000 0.00 0.00 0.00 4.35
3470 7704 4.142609 AGTAACACCATGTATGCTCCAG 57.857 45.455 0.00 0.00 0.00 3.86
3507 7741 7.337689 TGATGGCAATTCAAGTGGATATATAGC 59.662 37.037 0.00 0.00 0.00 2.97
3663 7905 5.273208 AGAAGAGAATGGTTCCTACTGCTA 58.727 41.667 0.00 0.00 0.00 3.49
3877 8304 8.557029 AGTGCTACAACTATACAAGAAAAACAC 58.443 33.333 0.00 0.00 0.00 3.32
3899 8326 9.928236 GATAAATCAGAAATAGTTGAGAAGTGC 57.072 33.333 0.00 0.00 0.00 4.40
4125 8578 2.158623 TCAGTTCAGCCACCACATCTTT 60.159 45.455 0.00 0.00 0.00 2.52
4244 8697 2.034558 GCAACAGCTAAAAGCCAGTCAA 59.965 45.455 0.00 0.00 43.77 3.18
4288 8741 9.152595 GATAGATAACCTAAAAGATTAAGGCCG 57.847 37.037 0.00 0.00 0.00 6.13
4311 8764 7.014230 TGTCAGATCGTTCCATCAACATAGATA 59.986 37.037 0.00 0.00 34.20 1.98
4387 8888 5.407691 AGCAACGACATCATTATCAGCATAG 59.592 40.000 0.00 0.00 0.00 2.23
5068 9578 7.490725 AGCATGTCACGCAATCTAGATTATATC 59.509 37.037 17.53 6.84 0.00 1.63
5079 9589 2.932614 AGAGTAAGCATGTCACGCAATC 59.067 45.455 0.00 0.00 0.00 2.67
5084 9594 6.752351 ACATAGTTTAGAGTAAGCATGTCACG 59.248 38.462 0.00 0.00 0.00 4.35
5165 9739 9.673454 AACCGTTAACTCATTGATTTTAGTTTC 57.327 29.630 3.71 0.00 34.23 2.78
5166 9740 9.673454 GAACCGTTAACTCATTGATTTTAGTTT 57.327 29.630 3.71 0.00 34.23 2.66
5167 9741 8.842280 TGAACCGTTAACTCATTGATTTTAGTT 58.158 29.630 3.71 0.00 36.26 2.24
5169 9743 7.962918 CCTGAACCGTTAACTCATTGATTTTAG 59.037 37.037 3.71 0.00 0.00 1.85
5170 9744 7.662258 TCCTGAACCGTTAACTCATTGATTTTA 59.338 33.333 3.71 0.00 0.00 1.52
5171 9745 6.488683 TCCTGAACCGTTAACTCATTGATTTT 59.511 34.615 3.71 0.00 0.00 1.82
5172 9746 6.001460 TCCTGAACCGTTAACTCATTGATTT 58.999 36.000 3.71 0.00 0.00 2.17
5180 9758 4.070009 ACCAAATCCTGAACCGTTAACTC 58.930 43.478 3.71 0.00 0.00 3.01
5181 9759 4.094830 ACCAAATCCTGAACCGTTAACT 57.905 40.909 3.71 0.00 0.00 2.24
5188 9766 5.949952 ACCAAATACTACCAAATCCTGAACC 59.050 40.000 0.00 0.00 0.00 3.62
5192 9770 6.834168 ACAACCAAATACTACCAAATCCTG 57.166 37.500 0.00 0.00 0.00 3.86
5193 9771 7.614192 CCTAACAACCAAATACTACCAAATCCT 59.386 37.037 0.00 0.00 0.00 3.24
5195 9773 8.344446 ACCTAACAACCAAATACTACCAAATC 57.656 34.615 0.00 0.00 0.00 2.17
5202 9780 6.499350 AGACCAGACCTAACAACCAAATACTA 59.501 38.462 0.00 0.00 0.00 1.82
5215 9793 5.046591 CACAAACTATGGAGACCAGACCTAA 60.047 44.000 0.00 0.00 36.75 2.69
5300 9878 5.121768 GCGCTAGAAAACTAAAATGGAGTCA 59.878 40.000 0.00 0.00 0.00 3.41
5307 9885 5.640732 CACCATGCGCTAGAAAACTAAAAT 58.359 37.500 9.73 0.00 0.00 1.82
5329 9907 7.307101 GGAAATTTCAGAAAGCGTTATTTTGCA 60.307 33.333 19.49 0.00 0.00 4.08
5336 9914 7.526608 CATACAGGAAATTTCAGAAAGCGTTA 58.473 34.615 19.49 0.00 0.00 3.18
5337 9915 4.918810 ACAGGAAATTTCAGAAAGCGTT 57.081 36.364 19.49 0.00 0.00 4.84
5339 9917 4.795278 GCATACAGGAAATTTCAGAAAGCG 59.205 41.667 19.49 3.86 0.00 4.68
5341 9919 6.521151 AGGCATACAGGAAATTTCAGAAAG 57.479 37.500 19.49 6.75 0.00 2.62
5354 9932 1.816961 GCTGATCCCAAGGCATACAGG 60.817 57.143 0.00 0.00 0.00 4.00
5387 9965 7.229306 TGCAAAGTTCATGATAAACTTCTGAGT 59.771 33.333 10.86 0.00 44.13 3.41
5404 9982 8.056407 AGAGACCCTTATAATTTGCAAAGTTC 57.944 34.615 18.18 7.25 0.00 3.01
5429 10007 3.196901 ACAAACTCGCCATGGTCATACTA 59.803 43.478 14.67 0.00 0.00 1.82
5435 10013 1.875963 CCACAAACTCGCCATGGTC 59.124 57.895 14.67 4.79 0.00 4.02
5473 10090 0.413832 TAGTGGGAGTCTGGGAGCTT 59.586 55.000 0.00 0.00 0.00 3.74
5506 10123 9.513906 TTTTCCTTCTTTCATTTTCCTGTTTTT 57.486 25.926 0.00 0.00 0.00 1.94
5507 10124 9.513906 TTTTTCCTTCTTTCATTTTCCTGTTTT 57.486 25.926 0.00 0.00 0.00 2.43
5537 10154 0.902048 TGAGGGGACAGTGAGCAGAG 60.902 60.000 0.00 0.00 0.00 3.35
5541 10158 1.298014 CCTTGAGGGGACAGTGAGC 59.702 63.158 0.00 0.00 0.00 4.26
5542 10159 1.298014 GCCTTGAGGGGACAGTGAG 59.702 63.158 0.00 0.00 35.18 3.51
5555 10173 4.348168 AGATTAGTGTATGGTAGGGCCTTG 59.652 45.833 13.45 0.00 38.35 3.61
5593 10212 8.400184 TCATTTCATTGAAAGACAGAACAGAT 57.600 30.769 16.34 0.00 34.92 2.90
5621 10241 0.035458 AACTCACAGGAGAAAGCCCG 59.965 55.000 0.00 0.00 44.26 6.13
5625 10245 4.527509 TGCTCTAACTCACAGGAGAAAG 57.472 45.455 0.00 0.00 44.26 2.62
5659 10279 3.550992 CGCGGACGAAATGGGTCG 61.551 66.667 0.00 0.00 46.54 4.79
5699 10319 0.591659 GTTGGGCCGACTTTTCTGTC 59.408 55.000 17.07 0.00 0.00 3.51
5738 10358 3.399770 CGGACGAAAACGAGCGCA 61.400 61.111 11.47 0.00 0.00 6.09
5739 10359 4.771812 GCGGACGAAAACGAGCGC 62.772 66.667 0.00 0.00 0.00 5.92
5742 10362 1.615107 GACAGGCGGACGAAAACGAG 61.615 60.000 0.00 0.00 0.00 4.18
5745 10365 1.662446 TCGACAGGCGGACGAAAAC 60.662 57.895 9.73 0.00 41.33 2.43
5758 10378 4.090588 GCCGGGAATGGGTCGACA 62.091 66.667 18.91 0.00 0.00 4.35
5783 10403 3.913573 CGACGCAAATCCGGCTCG 61.914 66.667 0.00 0.00 33.03 5.03
5803 10423 2.740714 GCATCCGTCTTGTGTCCGC 61.741 63.158 0.00 0.00 0.00 5.54
5827 10447 0.250901 GTGAGGAAAGAGGGCAAGCA 60.251 55.000 0.00 0.00 0.00 3.91
5828 10448 0.962855 GGTGAGGAAAGAGGGCAAGC 60.963 60.000 0.00 0.00 0.00 4.01
5831 10451 2.592993 CCGGTGAGGAAAGAGGGCA 61.593 63.158 0.00 0.00 45.00 5.36
5854 10474 2.672996 AATGTGCCACCGACCAGC 60.673 61.111 0.00 0.00 0.00 4.85
5858 10478 0.171007 CAATCCAATGTGCCACCGAC 59.829 55.000 0.00 0.00 0.00 4.79
5884 10504 3.126858 CGAGGGTGTGTTGTTTGATATGG 59.873 47.826 0.00 0.00 0.00 2.74
5887 10507 2.147958 GCGAGGGTGTGTTGTTTGATA 58.852 47.619 0.00 0.00 0.00 2.15
5947 10570 9.512435 TGTGTACGCTAGAACTATCTTTTTATC 57.488 33.333 8.10 0.00 37.10 1.75
5973 10655 6.704937 CGAGTAGTTGGTCTTTTCTTTTACCT 59.295 38.462 0.00 0.00 32.99 3.08
5974 10656 6.481313 ACGAGTAGTTGGTCTTTTCTTTTACC 59.519 38.462 0.00 0.00 0.00 2.85
5975 10657 7.474398 ACGAGTAGTTGGTCTTTTCTTTTAC 57.526 36.000 0.00 0.00 0.00 2.01
6033 10715 0.866061 CGCCTACATTCAGACGTCGG 60.866 60.000 10.46 10.03 0.00 4.79
6089 10771 5.652744 TTGAAACTGAAGCTACGAGAAAC 57.347 39.130 0.00 0.00 0.00 2.78
6096 10778 5.693814 CCACTCAATTGAAACTGAAGCTAC 58.306 41.667 9.88 0.00 0.00 3.58
6134 10816 4.697352 GTGTCATGGTATCACTGAAAAGCT 59.303 41.667 0.00 0.00 0.00 3.74
6149 10833 8.481641 CGCATATTAATGAATTTTGTGTCATGG 58.518 33.333 0.00 0.00 34.70 3.66
6175 10859 2.549754 AGCACTGCTAATGAACACACAC 59.450 45.455 0.21 0.00 36.99 3.82
6176 10860 2.849942 AGCACTGCTAATGAACACACA 58.150 42.857 0.21 0.00 36.99 3.72
6177 10861 3.499918 AGAAGCACTGCTAATGAACACAC 59.500 43.478 3.33 0.00 38.25 3.82
6188 10872 1.808945 CGATTGGAAAGAAGCACTGCT 59.191 47.619 0.00 0.00 42.56 4.24
6264 11047 7.657336 CAATACCACAATTGAAAGTTACCACT 58.343 34.615 13.59 0.00 38.84 4.00
6265 11048 6.364976 GCAATACCACAATTGAAAGTTACCAC 59.635 38.462 13.59 0.00 38.84 4.16
6266 11049 6.040955 TGCAATACCACAATTGAAAGTTACCA 59.959 34.615 13.59 0.00 38.84 3.25
6267 11050 6.451393 TGCAATACCACAATTGAAAGTTACC 58.549 36.000 13.59 0.00 38.84 2.85
6309 11092 1.282738 TGAGGTGTCATGATGCATGGT 59.717 47.619 2.46 0.00 41.66 3.55
6448 12267 6.389830 TGTAAATTCAAGCATGTGACAAGT 57.610 33.333 0.00 0.00 0.00 3.16
6466 12285 5.864418 AGTATCGGCAACCTAGATGTAAA 57.136 39.130 0.00 0.00 0.00 2.01
6828 12648 0.823460 GAGCTCACTCCCTCTCCTTG 59.177 60.000 9.40 0.00 36.90 3.61
6873 12693 6.789262 AGAGAAATGGCAAAATAAGTGATCG 58.211 36.000 0.00 0.00 0.00 3.69
7111 13334 8.720562 TCATAAATGTTTCGATTATGCGATCAT 58.279 29.630 9.77 0.00 40.35 2.45
7112 13335 8.082334 TCATAAATGTTTCGATTATGCGATCA 57.918 30.769 9.77 0.00 40.35 2.92
7149 13372 8.576442 TGCATATATATAGTATGTGGATCACGG 58.424 37.037 0.00 0.00 37.14 4.94
7230 13493 1.835494 TGGTGGGTGTGTTCGAAAAA 58.165 45.000 0.00 0.00 0.00 1.94
7231 13494 1.678627 CATGGTGGGTGTGTTCGAAAA 59.321 47.619 0.00 0.00 0.00 2.29
7232 13495 1.134068 TCATGGTGGGTGTGTTCGAAA 60.134 47.619 0.00 0.00 0.00 3.46
7233 13496 0.470341 TCATGGTGGGTGTGTTCGAA 59.530 50.000 0.00 0.00 0.00 3.71
7234 13497 0.034756 CTCATGGTGGGTGTGTTCGA 59.965 55.000 0.00 0.00 0.00 3.71
7235 13498 1.577328 GCTCATGGTGGGTGTGTTCG 61.577 60.000 0.00 0.00 0.00 3.95
7236 13499 0.537143 TGCTCATGGTGGGTGTGTTC 60.537 55.000 0.00 0.00 0.00 3.18
7237 13500 0.538057 CTGCTCATGGTGGGTGTGTT 60.538 55.000 0.00 0.00 0.00 3.32
7238 13501 1.073722 CTGCTCATGGTGGGTGTGT 59.926 57.895 0.00 0.00 0.00 3.72
7239 13502 2.338015 GCTGCTCATGGTGGGTGTG 61.338 63.158 0.00 0.00 0.00 3.82
7240 13503 1.200760 TAGCTGCTCATGGTGGGTGT 61.201 55.000 4.91 0.00 0.00 4.16
7241 13504 0.745845 GTAGCTGCTCATGGTGGGTG 60.746 60.000 4.91 0.00 0.00 4.61
7242 13505 1.604378 GTAGCTGCTCATGGTGGGT 59.396 57.895 4.91 0.00 0.00 4.51
7243 13506 1.153086 GGTAGCTGCTCATGGTGGG 60.153 63.158 4.91 0.00 0.00 4.61
7244 13507 0.182061 ATGGTAGCTGCTCATGGTGG 59.818 55.000 4.91 0.00 0.00 4.61
7245 13508 1.306148 CATGGTAGCTGCTCATGGTG 58.694 55.000 18.58 5.76 35.82 4.17
7246 13509 3.794737 CATGGTAGCTGCTCATGGT 57.205 52.632 18.58 0.00 35.82 3.55
7248 13511 2.336945 TTCCATGGTAGCTGCTCATG 57.663 50.000 19.13 19.13 38.30 3.07
7249 13512 2.174210 ACATTCCATGGTAGCTGCTCAT 59.826 45.455 12.58 1.03 33.60 2.90
7250 13513 1.561076 ACATTCCATGGTAGCTGCTCA 59.439 47.619 12.58 0.00 33.60 4.26
7251 13514 1.945394 CACATTCCATGGTAGCTGCTC 59.055 52.381 12.58 0.00 33.60 4.26
7252 13515 1.409241 CCACATTCCATGGTAGCTGCT 60.409 52.381 12.58 7.57 32.08 4.24
7253 13516 1.027357 CCACATTCCATGGTAGCTGC 58.973 55.000 12.58 0.00 32.08 5.25
7254 13517 1.064463 ACCCACATTCCATGGTAGCTG 60.064 52.381 12.58 7.74 35.23 4.24
7255 13518 1.298953 ACCCACATTCCATGGTAGCT 58.701 50.000 12.58 0.00 35.23 3.32
7256 13519 3.290948 TTACCCACATTCCATGGTAGC 57.709 47.619 12.58 0.00 34.96 3.58
7375 13639 0.891373 TCAAGGAGAGGAGAGCGTTG 59.109 55.000 0.00 0.00 0.00 4.10
7379 13643 3.030291 TCTGAATCAAGGAGAGGAGAGC 58.970 50.000 0.00 0.00 0.00 4.09
7467 14014 4.724602 GCTCCGAGCAGACGCACA 62.725 66.667 15.78 0.00 41.89 4.57
7543 14095 2.464459 GCTAGGCGTGATGTGCACC 61.464 63.158 15.69 0.00 44.85 5.01
7791 14343 2.042686 TCACACCTTCATATGCTGGC 57.957 50.000 11.97 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.