Multiple sequence alignment - TraesCS3A01G275600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G275600 chr3A 100.000 3598 0 0 1 3598 505227185 505223588 0.000000e+00 6645.0
1 TraesCS3A01G275600 chr3A 100.000 2392 0 0 3963 6354 505223223 505220832 0.000000e+00 4418.0
2 TraesCS3A01G275600 chr3A 89.157 83 9 0 1054 1136 514316334 514316252 3.130000e-18 104.0
3 TraesCS3A01G275600 chr3A 87.500 64 5 1 1512 1575 359363021 359363081 3.180000e-08 71.3
4 TraesCS3A01G275600 chr3B 88.377 2581 166 73 703 3231 497714870 497712372 0.000000e+00 2981.0
5 TraesCS3A01G275600 chr3B 91.732 1403 70 21 4192 5563 497711430 497710043 0.000000e+00 1906.0
6 TraesCS3A01G275600 chr3B 91.149 644 39 8 5721 6348 497709841 497709200 0.000000e+00 857.0
7 TraesCS3A01G275600 chr3B 89.213 686 36 21 1 671 498053275 498052613 0.000000e+00 822.0
8 TraesCS3A01G275600 chr3B 92.775 346 19 2 3256 3598 497712380 497712038 4.420000e-136 496.0
9 TraesCS3A01G275600 chr3B 92.935 184 12 1 3963 4146 497711610 497711428 3.780000e-67 267.0
10 TraesCS3A01G275600 chr3B 87.952 83 10 0 1054 1136 519062414 519062332 1.460000e-16 99.0
11 TraesCS3A01G275600 chr3D 88.584 1638 106 50 712 2296 381995415 381993806 0.000000e+00 1914.0
12 TraesCS3A01G275600 chr3D 93.191 1307 65 14 2301 3598 381993522 381992231 0.000000e+00 1899.0
13 TraesCS3A01G275600 chr3D 93.019 1232 76 8 4192 5418 381992025 381990799 0.000000e+00 1790.0
14 TraesCS3A01G275600 chr3D 89.616 703 48 20 1 697 382098439 382097756 0.000000e+00 870.0
15 TraesCS3A01G275600 chr3D 94.975 398 15 3 5962 6354 381990240 381989843 2.520000e-173 619.0
16 TraesCS3A01G275600 chr3D 96.196 184 6 1 3963 4146 381992205 381992023 3.720000e-77 300.0
17 TraesCS3A01G275600 chr3D 89.157 83 9 0 1054 1136 394932065 394931983 3.130000e-18 104.0
18 TraesCS3A01G275600 chr1B 89.091 165 18 0 1518 1682 189325669 189325505 8.350000e-49 206.0
19 TraesCS3A01G275600 chr1A 89.091 165 18 0 1518 1682 138228117 138227953 8.350000e-49 206.0
20 TraesCS3A01G275600 chr1D 89.441 161 17 0 1518 1678 125070682 125070522 3.000000e-48 204.0
21 TraesCS3A01G275600 chr1D 87.500 64 7 1 2091 2153 462107289 462107352 8.840000e-09 73.1
22 TraesCS3A01G275600 chr4D 80.556 216 35 6 1946 2155 10752683 10752469 6.590000e-35 159.0
23 TraesCS3A01G275600 chr4D 86.000 100 12 1 6240 6337 358476936 358476837 8.710000e-19 106.0
24 TraesCS3A01G275600 chr4D 79.021 143 17 9 1949 2081 15330251 15330112 1.140000e-12 86.1
25 TraesCS3A01G275600 chr7A 88.542 96 11 0 6241 6336 250681377 250681282 4.020000e-22 117.0
26 TraesCS3A01G275600 chr7A 83.505 97 11 2 6241 6336 52966776 52966868 1.140000e-12 86.1
27 TraesCS3A01G275600 chr6D 86.458 96 10 1 6241 6336 96747893 96747801 1.130000e-17 102.0
28 TraesCS3A01G275600 chr6D 83.505 97 15 1 6241 6336 327364451 327364355 8.770000e-14 89.8
29 TraesCS3A01G275600 chr7B 84.158 101 12 4 6239 6337 680523227 680523325 1.890000e-15 95.3
30 TraesCS3A01G275600 chr2A 82.474 97 17 0 6240 6336 464059980 464060076 1.140000e-12 86.1
31 TraesCS3A01G275600 chr2A 87.500 64 5 1 1512 1575 723641432 723641372 3.180000e-08 71.3
32 TraesCS3A01G275600 chr4B 90.625 64 3 2 1512 1575 65595712 65595652 1.470000e-11 82.4
33 TraesCS3A01G275600 chr4B 87.097 62 6 2 2079 2140 638699384 638699443 1.140000e-07 69.4
34 TraesCS3A01G275600 chr6A 93.878 49 3 0 1512 1560 384876046 384876094 2.460000e-09 75.0
35 TraesCS3A01G275600 chr7D 88.136 59 5 2 2034 2092 28579130 28579186 1.140000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G275600 chr3A 505220832 505227185 6353 True 5531.5 6645 100.0000 1 6354 2 chr3A.!!$R2 6353
1 TraesCS3A01G275600 chr3B 497709200 497714870 5670 True 1301.4 2981 91.3936 703 6348 5 chr3B.!!$R3 5645
2 TraesCS3A01G275600 chr3B 498052613 498053275 662 True 822.0 822 89.2130 1 671 1 chr3B.!!$R1 670
3 TraesCS3A01G275600 chr3D 381989843 381995415 5572 True 1304.4 1914 93.1930 712 6354 5 chr3D.!!$R3 5642
4 TraesCS3A01G275600 chr3D 382097756 382098439 683 True 870.0 870 89.6160 1 697 1 chr3D.!!$R1 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 523 0.031716 TGGAGGATGTGGGAGAGGAG 60.032 60.0 0.00 0.0 0.0 3.69 F
1444 1473 0.039472 TCAGGTCAGCTCAGCTCTCT 59.961 55.0 0.00 0.0 36.4 3.10 F
1720 1777 0.109532 TCAGTTTTCACATGGCCGGA 59.890 50.0 5.05 0.0 0.0 5.14 F
2494 2869 0.320421 TCCACTTCTGCTACGTTGGC 60.320 55.0 0.00 0.0 0.0 4.52 F
3996 4443 0.250793 ACCGGTCCGTAAATGATGCA 59.749 50.0 11.06 0.0 0.0 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 2290 0.032912 ATGCCCTGCACATGATGGAA 60.033 50.0 0.00 0.00 43.04 3.53 R
2355 2730 0.037419 GGCACGCCAAATGGAAACAT 60.037 50.0 2.98 0.00 44.63 2.71 R
2903 3283 0.252197 AGCCGTTCCCTGTGAATACC 59.748 55.0 0.00 0.00 34.90 2.73 R
4149 4596 0.179225 GAACACTATGTGCGCAACGG 60.179 55.0 14.00 5.44 36.98 4.44 R
5890 6525 0.464452 AACCTATCTTCGCCTTCCCG 59.536 55.0 0.00 0.00 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.085893 TAGCATTGCATCACACACCG 58.914 50.000 11.91 0.00 0.00 4.94
47 48 1.143305 CAACTGAAGCACACTCTCCG 58.857 55.000 0.00 0.00 0.00 4.63
57 58 0.541392 ACACTCTCCGGCATTGCATA 59.459 50.000 11.39 0.00 0.00 3.14
58 59 1.141657 ACACTCTCCGGCATTGCATAT 59.858 47.619 11.39 0.00 0.00 1.78
59 60 2.224606 CACTCTCCGGCATTGCATATT 58.775 47.619 11.39 0.00 0.00 1.28
60 61 2.620115 CACTCTCCGGCATTGCATATTT 59.380 45.455 11.39 0.00 0.00 1.40
61 62 2.620115 ACTCTCCGGCATTGCATATTTG 59.380 45.455 11.39 0.00 0.00 2.32
108 109 1.067354 CGCGTAACCTAACCTCCAACT 60.067 52.381 0.00 0.00 0.00 3.16
109 110 2.611224 CGCGTAACCTAACCTCCAACTT 60.611 50.000 0.00 0.00 0.00 2.66
399 400 1.219664 CCAAACGGCGGGAGACATA 59.780 57.895 13.24 0.00 38.29 2.29
452 456 4.717629 CGTTCAGGGCGCACGAGA 62.718 66.667 10.83 6.76 35.93 4.04
453 457 2.811317 GTTCAGGGCGCACGAGAG 60.811 66.667 10.83 0.00 0.00 3.20
454 458 2.989253 TTCAGGGCGCACGAGAGA 60.989 61.111 10.83 0.62 0.00 3.10
455 459 2.994671 TTCAGGGCGCACGAGAGAG 61.995 63.158 10.83 0.00 0.00 3.20
456 460 4.504916 CAGGGCGCACGAGAGAGG 62.505 72.222 10.83 0.00 0.00 3.69
459 463 4.803426 GGCGCACGAGAGAGGGTG 62.803 72.222 10.83 0.00 37.00 4.61
460 464 4.803426 GCGCACGAGAGAGGGTGG 62.803 72.222 0.30 0.00 37.00 4.61
461 465 4.135153 CGCACGAGAGAGGGTGGG 62.135 72.222 0.00 0.00 40.06 4.61
462 466 2.680352 GCACGAGAGAGGGTGGGA 60.680 66.667 0.00 0.00 34.76 4.37
463 467 2.283529 GCACGAGAGAGGGTGGGAA 61.284 63.158 0.00 0.00 34.76 3.97
464 468 1.893786 CACGAGAGAGGGTGGGAAG 59.106 63.158 0.00 0.00 0.00 3.46
465 469 0.612174 CACGAGAGAGGGTGGGAAGA 60.612 60.000 0.00 0.00 0.00 2.87
466 470 0.114560 ACGAGAGAGGGTGGGAAGAA 59.885 55.000 0.00 0.00 0.00 2.52
467 471 0.820871 CGAGAGAGGGTGGGAAGAAG 59.179 60.000 0.00 0.00 0.00 2.85
468 472 1.199615 GAGAGAGGGTGGGAAGAAGG 58.800 60.000 0.00 0.00 0.00 3.46
469 473 0.793617 AGAGAGGGTGGGAAGAAGGA 59.206 55.000 0.00 0.00 0.00 3.36
470 474 1.199615 GAGAGGGTGGGAAGAAGGAG 58.800 60.000 0.00 0.00 0.00 3.69
471 475 0.793617 AGAGGGTGGGAAGAAGGAGA 59.206 55.000 0.00 0.00 0.00 3.71
472 476 1.199615 GAGGGTGGGAAGAAGGAGAG 58.800 60.000 0.00 0.00 0.00 3.20
473 477 0.912006 AGGGTGGGAAGAAGGAGAGC 60.912 60.000 0.00 0.00 0.00 4.09
474 478 1.219393 GGTGGGAAGAAGGAGAGCG 59.781 63.158 0.00 0.00 0.00 5.03
475 479 1.448717 GTGGGAAGAAGGAGAGCGC 60.449 63.158 0.00 0.00 0.00 5.92
476 480 2.202810 GGGAAGAAGGAGAGCGCG 60.203 66.667 0.00 0.00 0.00 6.86
477 481 2.888051 GGAAGAAGGAGAGCGCGC 60.888 66.667 26.66 26.66 0.00 6.86
478 482 3.251043 GAAGAAGGAGAGCGCGCG 61.251 66.667 28.44 28.44 0.00 6.86
479 483 3.973267 GAAGAAGGAGAGCGCGCGT 62.973 63.158 32.35 17.97 0.00 6.01
480 484 2.594119 GAAGAAGGAGAGCGCGCGTA 62.594 60.000 32.35 0.00 0.00 4.42
481 485 2.868999 AAGAAGGAGAGCGCGCGTAC 62.869 60.000 32.35 23.94 0.00 3.67
482 486 4.831307 AAGGAGAGCGCGCGTACG 62.831 66.667 32.35 11.84 44.07 3.67
493 497 4.908877 GCGTACGCGAGGAGAGGC 62.909 72.222 26.17 5.89 41.33 4.70
510 514 4.838152 CGGGCGGTGGAGGATGTG 62.838 72.222 0.00 0.00 0.00 3.21
511 515 4.489771 GGGCGGTGGAGGATGTGG 62.490 72.222 0.00 0.00 0.00 4.17
512 516 4.489771 GGCGGTGGAGGATGTGGG 62.490 72.222 0.00 0.00 0.00 4.61
513 517 3.399181 GCGGTGGAGGATGTGGGA 61.399 66.667 0.00 0.00 0.00 4.37
514 518 2.903357 CGGTGGAGGATGTGGGAG 59.097 66.667 0.00 0.00 0.00 4.30
515 519 1.685765 CGGTGGAGGATGTGGGAGA 60.686 63.158 0.00 0.00 0.00 3.71
516 520 1.680522 CGGTGGAGGATGTGGGAGAG 61.681 65.000 0.00 0.00 0.00 3.20
517 521 1.341156 GGTGGAGGATGTGGGAGAGG 61.341 65.000 0.00 0.00 0.00 3.69
518 522 0.325671 GTGGAGGATGTGGGAGAGGA 60.326 60.000 0.00 0.00 0.00 3.71
519 523 0.031716 TGGAGGATGTGGGAGAGGAG 60.032 60.000 0.00 0.00 0.00 3.69
520 524 1.406860 GGAGGATGTGGGAGAGGAGC 61.407 65.000 0.00 0.00 0.00 4.70
521 525 1.743321 GAGGATGTGGGAGAGGAGCG 61.743 65.000 0.00 0.00 0.00 5.03
522 526 2.107953 GATGTGGGAGAGGAGCGC 59.892 66.667 0.00 0.00 0.00 5.92
523 527 3.781770 GATGTGGGAGAGGAGCGCG 62.782 68.421 0.00 0.00 0.00 6.86
542 546 2.586792 GGCTCATGGCGGTTCTCT 59.413 61.111 0.00 0.00 42.94 3.10
543 547 1.817099 GGCTCATGGCGGTTCTCTG 60.817 63.158 0.00 0.00 42.94 3.35
544 548 2.467826 GCTCATGGCGGTTCTCTGC 61.468 63.158 0.00 0.00 44.51 4.26
545 549 1.220206 CTCATGGCGGTTCTCTGCT 59.780 57.895 0.00 0.00 44.62 4.24
546 550 0.809241 CTCATGGCGGTTCTCTGCTC 60.809 60.000 0.00 0.00 44.62 4.26
547 551 1.220206 CATGGCGGTTCTCTGCTCT 59.780 57.895 0.00 0.00 44.62 4.09
548 552 1.088340 CATGGCGGTTCTCTGCTCTG 61.088 60.000 0.00 0.00 44.62 3.35
549 553 2.817396 GGCGGTTCTCTGCTCTGC 60.817 66.667 0.00 0.00 44.62 4.26
550 554 2.264166 GCGGTTCTCTGCTCTGCT 59.736 61.111 0.00 0.00 42.20 4.24
551 555 1.809209 GCGGTTCTCTGCTCTGCTC 60.809 63.158 0.00 0.00 42.20 4.26
552 556 1.889454 CGGTTCTCTGCTCTGCTCT 59.111 57.895 0.00 0.00 0.00 4.09
553 557 0.458197 CGGTTCTCTGCTCTGCTCTG 60.458 60.000 0.00 0.00 0.00 3.35
554 558 0.740516 GGTTCTCTGCTCTGCTCTGC 60.741 60.000 0.00 0.00 0.00 4.26
555 559 0.247185 GTTCTCTGCTCTGCTCTGCT 59.753 55.000 0.00 0.00 0.00 4.24
556 560 0.975135 TTCTCTGCTCTGCTCTGCTT 59.025 50.000 0.00 0.00 0.00 3.91
557 561 0.531657 TCTCTGCTCTGCTCTGCTTC 59.468 55.000 0.00 0.00 0.00 3.86
558 562 0.802994 CTCTGCTCTGCTCTGCTTCG 60.803 60.000 0.00 0.00 0.00 3.79
559 563 1.810441 CTGCTCTGCTCTGCTTCGG 60.810 63.158 0.00 0.00 0.00 4.30
560 564 2.223200 CTGCTCTGCTCTGCTTCGGA 62.223 60.000 0.00 0.00 0.00 4.55
561 565 1.143620 GCTCTGCTCTGCTTCGGAT 59.856 57.895 0.00 0.00 0.00 4.18
562 566 0.461693 GCTCTGCTCTGCTTCGGATT 60.462 55.000 0.00 0.00 0.00 3.01
563 567 2.011046 GCTCTGCTCTGCTTCGGATTT 61.011 52.381 0.00 0.00 0.00 2.17
564 568 1.664659 CTCTGCTCTGCTTCGGATTTG 59.335 52.381 0.00 0.00 0.00 2.32
565 569 0.731417 CTGCTCTGCTTCGGATTTGG 59.269 55.000 0.00 0.00 0.00 3.28
566 570 1.308069 TGCTCTGCTTCGGATTTGGC 61.308 55.000 0.00 0.00 0.00 4.52
567 571 1.028868 GCTCTGCTTCGGATTTGGCT 61.029 55.000 0.00 0.00 0.00 4.75
568 572 0.731417 CTCTGCTTCGGATTTGGCTG 59.269 55.000 0.00 0.00 0.00 4.85
569 573 1.138247 CTGCTTCGGATTTGGCTGC 59.862 57.895 0.00 0.00 0.00 5.25
570 574 2.100991 GCTTCGGATTTGGCTGCG 59.899 61.111 0.00 0.00 0.00 5.18
571 575 2.100991 CTTCGGATTTGGCTGCGC 59.899 61.111 0.00 0.00 0.00 6.09
572 576 3.723364 CTTCGGATTTGGCTGCGCG 62.723 63.158 0.00 0.00 0.00 6.86
576 580 4.543084 GATTTGGCTGCGCGGCTC 62.543 66.667 37.68 27.68 39.32 4.70
593 597 2.916355 TCCGGATGGAGGAAGGAAG 58.084 57.895 0.00 0.00 40.17 3.46
594 598 0.691078 TCCGGATGGAGGAAGGAAGG 60.691 60.000 0.00 0.00 40.17 3.46
605 609 1.289530 GGAAGGAAGGAGGAGGAGAGA 59.710 57.143 0.00 0.00 0.00 3.10
607 611 1.693799 AGGAAGGAGGAGGAGAGAGT 58.306 55.000 0.00 0.00 0.00 3.24
608 612 1.287739 AGGAAGGAGGAGGAGAGAGTG 59.712 57.143 0.00 0.00 0.00 3.51
609 613 1.111277 GAAGGAGGAGGAGAGAGTGC 58.889 60.000 0.00 0.00 0.00 4.40
610 614 0.325203 AAGGAGGAGGAGAGAGTGCC 60.325 60.000 0.00 0.00 0.00 5.01
611 615 2.124693 GGAGGAGGAGAGAGTGCCG 61.125 68.421 0.00 0.00 0.00 5.69
612 616 2.757917 AGGAGGAGAGAGTGCCGC 60.758 66.667 0.00 0.00 0.00 6.53
613 617 3.071206 GGAGGAGAGAGTGCCGCA 61.071 66.667 0.00 0.00 0.00 5.69
614 618 2.183046 GAGGAGAGAGTGCCGCAC 59.817 66.667 16.04 16.04 34.10 5.34
615 619 3.691744 GAGGAGAGAGTGCCGCACG 62.692 68.421 17.64 0.00 39.64 5.34
642 646 3.621805 GGGGCGGGTTGGGTTTTG 61.622 66.667 0.00 0.00 0.00 2.44
643 647 2.522193 GGGCGGGTTGGGTTTTGA 60.522 61.111 0.00 0.00 0.00 2.69
644 648 2.570284 GGGCGGGTTGGGTTTTGAG 61.570 63.158 0.00 0.00 0.00 3.02
645 649 1.529713 GGCGGGTTGGGTTTTGAGA 60.530 57.895 0.00 0.00 0.00 3.27
646 650 0.898326 GGCGGGTTGGGTTTTGAGAT 60.898 55.000 0.00 0.00 0.00 2.75
647 651 0.243636 GCGGGTTGGGTTTTGAGATG 59.756 55.000 0.00 0.00 0.00 2.90
648 652 0.887933 CGGGTTGGGTTTTGAGATGG 59.112 55.000 0.00 0.00 0.00 3.51
649 653 1.266178 GGGTTGGGTTTTGAGATGGG 58.734 55.000 0.00 0.00 0.00 4.00
650 654 1.266178 GGTTGGGTTTTGAGATGGGG 58.734 55.000 0.00 0.00 0.00 4.96
651 655 1.203125 GGTTGGGTTTTGAGATGGGGA 60.203 52.381 0.00 0.00 0.00 4.81
652 656 2.559705 GGTTGGGTTTTGAGATGGGGAT 60.560 50.000 0.00 0.00 0.00 3.85
653 657 2.760650 GTTGGGTTTTGAGATGGGGATC 59.239 50.000 0.00 0.00 0.00 3.36
654 658 1.064758 TGGGTTTTGAGATGGGGATCG 60.065 52.381 0.00 0.00 0.00 3.69
655 659 1.211949 GGGTTTTGAGATGGGGATCGA 59.788 52.381 0.00 0.00 0.00 3.59
656 660 2.565841 GGTTTTGAGATGGGGATCGAG 58.434 52.381 0.00 0.00 0.00 4.04
657 661 2.092914 GGTTTTGAGATGGGGATCGAGT 60.093 50.000 0.00 0.00 0.00 4.18
658 662 2.939103 GTTTTGAGATGGGGATCGAGTG 59.061 50.000 0.00 0.00 0.00 3.51
659 663 1.123077 TTGAGATGGGGATCGAGTGG 58.877 55.000 0.00 0.00 0.00 4.00
660 664 0.760567 TGAGATGGGGATCGAGTGGG 60.761 60.000 0.00 0.00 0.00 4.61
661 665 2.105806 GAGATGGGGATCGAGTGGGC 62.106 65.000 0.00 0.00 0.00 5.36
662 666 3.171388 ATGGGGATCGAGTGGGCC 61.171 66.667 0.00 0.00 0.00 5.80
692 696 4.181051 GCTTGGAAAGGCCTGTGT 57.819 55.556 5.69 0.00 46.35 3.72
693 697 2.429927 GCTTGGAAAGGCCTGTGTT 58.570 52.632 5.69 0.00 46.35 3.32
694 698 0.752658 GCTTGGAAAGGCCTGTGTTT 59.247 50.000 5.69 0.00 46.35 2.83
695 699 1.138859 GCTTGGAAAGGCCTGTGTTTT 59.861 47.619 5.69 0.00 46.35 2.43
696 700 2.419990 GCTTGGAAAGGCCTGTGTTTTT 60.420 45.455 5.69 0.00 46.35 1.94
697 701 3.457234 CTTGGAAAGGCCTGTGTTTTTC 58.543 45.455 5.69 4.81 41.27 2.29
698 702 1.760029 TGGAAAGGCCTGTGTTTTTCC 59.240 47.619 20.47 20.47 45.54 3.13
699 703 1.760029 GGAAAGGCCTGTGTTTTTCCA 59.240 47.619 21.80 0.00 44.98 3.53
700 704 2.224042 GGAAAGGCCTGTGTTTTTCCAG 60.224 50.000 21.80 0.00 44.98 3.86
819 831 2.201022 ACGGTGTCTTCGCTGTCCT 61.201 57.895 0.00 0.00 39.12 3.85
820 832 1.444553 CGGTGTCTTCGCTGTCCTC 60.445 63.158 0.00 0.00 0.00 3.71
821 833 1.079750 GGTGTCTTCGCTGTCCTCC 60.080 63.158 0.00 0.00 0.00 4.30
822 834 1.444553 GTGTCTTCGCTGTCCTCCG 60.445 63.158 0.00 0.00 0.00 4.63
823 835 2.507324 GTCTTCGCTGTCCTCCGC 60.507 66.667 0.00 0.00 0.00 5.54
824 836 2.989253 TCTTCGCTGTCCTCCGCA 60.989 61.111 0.00 0.00 0.00 5.69
859 871 2.091852 CTGGTGCTTCTCCAGTTCTC 57.908 55.000 6.74 0.00 45.09 2.87
860 872 0.687354 TGGTGCTTCTCCAGTTCTCC 59.313 55.000 0.00 0.00 0.00 3.71
1138 1153 1.218047 GTCTGCATCGCCAGGTACA 59.782 57.895 0.00 0.00 33.64 2.90
1142 1157 0.827368 TGCATCGCCAGGTACATACA 59.173 50.000 0.00 0.00 0.00 2.29
1143 1158 1.217882 GCATCGCCAGGTACATACAC 58.782 55.000 0.00 0.00 0.00 2.90
1144 1159 1.487482 CATCGCCAGGTACATACACG 58.513 55.000 0.00 0.00 0.00 4.49
1145 1160 0.249322 ATCGCCAGGTACATACACGC 60.249 55.000 0.00 0.00 0.00 5.34
1146 1161 1.153726 CGCCAGGTACATACACGCA 60.154 57.895 0.00 0.00 0.00 5.24
1147 1162 0.529773 CGCCAGGTACATACACGCAT 60.530 55.000 0.00 0.00 0.00 4.73
1179 1206 0.961019 TTGTTCCATTGGTGCTCTGC 59.039 50.000 1.86 0.00 0.00 4.26
1199 1226 0.864377 TCGCCGTCGATCGTTGATTC 60.864 55.000 15.94 0.35 40.21 2.52
1203 1230 2.215812 GCCGTCGATCGTTGATTCTTAC 59.784 50.000 15.94 1.24 37.94 2.34
1425 1454 4.262635 CGCTATATGTTCCTCATGGACCTT 60.263 45.833 0.00 0.00 43.06 3.50
1439 1468 4.613929 CCTTCAGGTCAGCTCAGC 57.386 61.111 0.00 0.00 0.00 4.26
1440 1469 1.981636 CCTTCAGGTCAGCTCAGCT 59.018 57.895 0.00 0.00 40.77 4.24
1442 1471 0.896923 CTTCAGGTCAGCTCAGCTCT 59.103 55.000 0.00 0.00 36.40 4.09
1444 1473 0.039472 TCAGGTCAGCTCAGCTCTCT 59.961 55.000 0.00 0.00 36.40 3.10
1445 1474 0.457035 CAGGTCAGCTCAGCTCTCTC 59.543 60.000 0.00 0.00 36.40 3.20
1447 1476 1.433064 GTCAGCTCAGCTCTCTCCG 59.567 63.158 0.00 0.00 36.40 4.63
1448 1477 1.752310 TCAGCTCAGCTCTCTCCGG 60.752 63.158 0.00 0.00 36.40 5.14
1449 1478 1.752310 CAGCTCAGCTCTCTCCGGA 60.752 63.158 2.93 2.93 36.40 5.14
1450 1479 1.752694 AGCTCAGCTCTCTCCGGAC 60.753 63.158 0.00 0.00 30.62 4.79
1451 1480 2.049185 GCTCAGCTCTCTCCGGACA 61.049 63.158 0.00 0.00 0.00 4.02
1452 1481 1.391157 GCTCAGCTCTCTCCGGACAT 61.391 60.000 0.00 0.00 0.00 3.06
1453 1482 0.385029 CTCAGCTCTCTCCGGACATG 59.615 60.000 0.00 0.00 0.00 3.21
1454 1483 1.227205 CAGCTCTCTCCGGACATGC 60.227 63.158 0.00 2.67 0.00 4.06
1455 1484 2.279120 GCTCTCTCCGGACATGCG 60.279 66.667 0.00 0.00 0.00 4.73
1456 1485 3.069980 GCTCTCTCCGGACATGCGT 62.070 63.158 0.00 0.00 0.00 5.24
1462 1491 3.576356 CCGGACATGCGTGCATCC 61.576 66.667 5.64 5.64 33.90 3.51
1463 1492 2.512286 CGGACATGCGTGCATCCT 60.512 61.111 5.64 0.00 33.90 3.24
1464 1493 2.528743 CGGACATGCGTGCATCCTC 61.529 63.158 5.64 2.71 33.90 3.71
1465 1494 1.153289 GGACATGCGTGCATCCTCT 60.153 57.895 5.64 0.00 33.90 3.69
1466 1495 0.745845 GGACATGCGTGCATCCTCTT 60.746 55.000 5.64 0.00 33.90 2.85
1467 1496 1.473257 GGACATGCGTGCATCCTCTTA 60.473 52.381 5.64 0.00 33.90 2.10
1468 1497 1.863454 GACATGCGTGCATCCTCTTAG 59.137 52.381 5.64 0.00 33.90 2.18
1469 1498 1.224075 CATGCGTGCATCCTCTTAGG 58.776 55.000 3.96 0.00 33.90 2.69
1470 1499 0.533755 ATGCGTGCATCCTCTTAGGC 60.534 55.000 0.51 0.00 34.61 3.93
1472 1501 0.533755 GCGTGCATCCTCTTAGGCAT 60.534 55.000 0.00 0.00 38.57 4.40
1473 1502 1.224075 CGTGCATCCTCTTAGGCATG 58.776 55.000 0.00 0.00 38.57 4.06
1475 1504 2.216898 GTGCATCCTCTTAGGCATGTC 58.783 52.381 0.00 0.00 38.57 3.06
1476 1505 1.839354 TGCATCCTCTTAGGCATGTCA 59.161 47.619 0.00 0.00 34.61 3.58
1477 1506 2.440627 TGCATCCTCTTAGGCATGTCAT 59.559 45.455 0.00 0.00 34.61 3.06
1478 1507 3.072944 GCATCCTCTTAGGCATGTCATC 58.927 50.000 0.00 0.00 34.61 2.92
1480 1509 4.746089 GCATCCTCTTAGGCATGTCATCTT 60.746 45.833 0.00 0.00 34.61 2.40
1481 1510 5.374921 CATCCTCTTAGGCATGTCATCTTT 58.625 41.667 0.00 0.00 34.61 2.52
1484 1513 4.574013 CCTCTTAGGCATGTCATCTTTCAC 59.426 45.833 0.00 0.00 0.00 3.18
1485 1514 4.517285 TCTTAGGCATGTCATCTTTCACC 58.483 43.478 0.00 0.00 0.00 4.02
1489 1518 2.165030 GGCATGTCATCTTTCACCCTTG 59.835 50.000 0.00 0.00 0.00 3.61
1490 1519 2.165030 GCATGTCATCTTTCACCCTTGG 59.835 50.000 0.00 0.00 0.00 3.61
1491 1520 1.909700 TGTCATCTTTCACCCTTGGC 58.090 50.000 0.00 0.00 0.00 4.52
1492 1521 0.804989 GTCATCTTTCACCCTTGGCG 59.195 55.000 0.00 0.00 0.00 5.69
1493 1522 0.400213 TCATCTTTCACCCTTGGCGT 59.600 50.000 0.00 0.00 0.00 5.68
1494 1523 1.202879 TCATCTTTCACCCTTGGCGTT 60.203 47.619 0.00 0.00 0.00 4.84
1496 1525 0.181587 TCTTTCACCCTTGGCGTTGA 59.818 50.000 0.00 0.00 0.00 3.18
1525 1562 3.558931 TCTGTTTGTTTGCAGGAGAGA 57.441 42.857 0.00 0.00 33.81 3.10
1528 1565 4.889409 TCTGTTTGTTTGCAGGAGAGAAAT 59.111 37.500 0.00 0.00 33.81 2.17
1645 1693 2.102438 CATCTTCAGGCGCTCGCAA 61.102 57.895 16.36 1.22 44.11 4.85
1648 1696 4.314440 TTCAGGCGCTCGCAAGGT 62.314 61.111 16.36 0.00 44.11 3.50
1690 1738 6.083925 GACAAGTACGTGTCTGATCATTTC 57.916 41.667 27.93 4.78 43.82 2.17
1691 1739 5.538118 ACAAGTACGTGTCTGATCATTTCA 58.462 37.500 8.75 0.00 0.00 2.69
1692 1740 5.405571 ACAAGTACGTGTCTGATCATTTCAC 59.594 40.000 8.75 5.52 0.00 3.18
1693 1741 5.392767 AGTACGTGTCTGATCATTTCACT 57.607 39.130 16.93 10.24 0.00 3.41
1694 1742 5.784177 AGTACGTGTCTGATCATTTCACTT 58.216 37.500 16.93 12.70 0.00 3.16
1695 1743 6.920817 AGTACGTGTCTGATCATTTCACTTA 58.079 36.000 16.93 12.02 0.00 2.24
1696 1744 7.375834 AGTACGTGTCTGATCATTTCACTTAA 58.624 34.615 16.93 5.70 0.00 1.85
1697 1745 6.712241 ACGTGTCTGATCATTTCACTTAAG 57.288 37.500 16.93 0.00 0.00 1.85
1698 1746 6.223852 ACGTGTCTGATCATTTCACTTAAGT 58.776 36.000 1.12 1.12 0.00 2.24
1699 1747 6.706270 ACGTGTCTGATCATTTCACTTAAGTT 59.294 34.615 5.07 0.00 0.00 2.66
1700 1748 7.226720 ACGTGTCTGATCATTTCACTTAAGTTT 59.773 33.333 5.07 0.00 0.00 2.66
1701 1749 8.070171 CGTGTCTGATCATTTCACTTAAGTTTT 58.930 33.333 5.07 0.00 0.00 2.43
1702 1750 9.387123 GTGTCTGATCATTTCACTTAAGTTTTC 57.613 33.333 5.07 0.00 0.00 2.29
1703 1751 9.119418 TGTCTGATCATTTCACTTAAGTTTTCA 57.881 29.630 5.07 1.39 0.00 2.69
1704 1752 9.604626 GTCTGATCATTTCACTTAAGTTTTCAG 57.395 33.333 5.07 10.13 0.00 3.02
1718 1775 2.791383 TTTCAGTTTTCACATGGCCG 57.209 45.000 0.00 0.00 0.00 6.13
1720 1777 0.109532 TCAGTTTTCACATGGCCGGA 59.890 50.000 5.05 0.00 0.00 5.14
1734 1791 1.980052 CCGGAGGCCAGTTTCTGTA 59.020 57.895 5.01 0.00 46.14 2.74
1752 1820 3.990092 TGTATCAAGTGAGTGAAACGCT 58.010 40.909 0.00 0.00 45.86 5.07
1763 1831 1.063488 GAAACGCTTGCGTGGTGTT 59.937 52.632 21.31 11.59 38.77 3.32
1778 1846 1.242076 GTGTTCCTGTTGCTGATGCT 58.758 50.000 0.00 0.00 40.48 3.79
1797 1865 1.854280 CTAGGGGGAGAGTACTGGAGT 59.146 57.143 0.00 0.00 0.00 3.85
1883 1951 1.965754 GCCTCGGAGATCTTGGCTGT 61.966 60.000 17.20 0.00 40.36 4.40
1900 1968 1.273606 CTGTCAGGTCAGTCACGGAAT 59.726 52.381 0.00 0.00 0.00 3.01
1906 1977 5.411669 GTCAGGTCAGTCACGGAATTATTTT 59.588 40.000 0.00 0.00 0.00 1.82
1910 1981 6.715264 AGGTCAGTCACGGAATTATTTTCTTT 59.285 34.615 0.00 0.00 0.00 2.52
1911 1982 7.881232 AGGTCAGTCACGGAATTATTTTCTTTA 59.119 33.333 0.00 0.00 0.00 1.85
1942 2016 2.008242 TTGGCTTGGTGCTTACCATT 57.992 45.000 0.00 0.00 39.86 3.16
1998 2072 7.857734 TTTTAGCCATAGACGAAATTCATCA 57.142 32.000 0.00 0.00 0.00 3.07
1999 2073 7.482654 TTTAGCCATAGACGAAATTCATCAG 57.517 36.000 0.00 0.00 0.00 2.90
2000 2074 5.028549 AGCCATAGACGAAATTCATCAGT 57.971 39.130 0.00 0.00 0.00 3.41
2001 2075 4.813161 AGCCATAGACGAAATTCATCAGTG 59.187 41.667 0.00 0.00 0.00 3.66
2002 2076 4.811024 GCCATAGACGAAATTCATCAGTGA 59.189 41.667 0.00 0.00 0.00 3.41
2003 2077 5.468072 GCCATAGACGAAATTCATCAGTGAT 59.532 40.000 0.00 0.00 33.56 3.06
2004 2078 6.017605 GCCATAGACGAAATTCATCAGTGATT 60.018 38.462 1.86 0.00 33.56 2.57
2005 2079 7.467811 GCCATAGACGAAATTCATCAGTGATTT 60.468 37.037 1.86 0.00 33.56 2.17
2006 2080 8.400947 CCATAGACGAAATTCATCAGTGATTTT 58.599 33.333 1.86 1.76 39.39 1.82
2007 2081 9.218359 CATAGACGAAATTCATCAGTGATTTTG 57.782 33.333 1.86 2.93 37.79 2.44
2008 2082 7.439157 AGACGAAATTCATCAGTGATTTTGA 57.561 32.000 1.86 0.00 37.79 2.69
2019 2093 9.131416 TCATCAGTGATTTTGATTTTCATTTCG 57.869 29.630 1.86 0.00 33.14 3.46
2027 2101 6.523676 TTTGATTTTCATTTCGGTCAAAGC 57.476 33.333 0.00 0.00 32.50 3.51
2047 2121 5.004922 AGCACCGAAATTTTCACTTGAAA 57.995 34.783 9.66 0.07 41.77 2.69
2048 2122 4.803613 AGCACCGAAATTTTCACTTGAAAC 59.196 37.500 9.66 0.00 43.01 2.78
2055 2129 7.434897 CCGAAATTTTCACTTGAAACTGATTGA 59.565 33.333 9.66 0.00 43.01 2.57
2141 2215 6.378582 TGCTGAAATATTTTGACCGAAAGAC 58.621 36.000 1.43 0.00 0.00 3.01
2178 2262 7.496704 AATGAAATTTCGATGAAATCACACG 57.503 32.000 13.34 5.78 40.77 4.49
2184 2278 4.840401 TCGATGAAATCACACGAATGAC 57.160 40.909 10.53 0.00 45.97 3.06
2187 2281 4.493057 CGATGAAATCACACGAATGACCAG 60.493 45.833 0.00 0.00 45.97 4.00
2196 2290 3.282021 CACGAATGACCAGGAATGGAAT 58.718 45.455 0.31 0.00 0.00 3.01
2213 2308 1.068127 GAATTCCATCATGTGCAGGGC 59.932 52.381 0.00 0.00 0.00 5.19
2287 2382 2.939103 GGCCATCTGCTGTAAGTACTTG 59.061 50.000 18.56 2.68 40.92 3.16
2288 2383 2.939103 GCCATCTGCTGTAAGTACTTGG 59.061 50.000 18.56 9.08 36.87 3.61
2299 2674 6.128254 GCTGTAAGTACTTGGAATTTGGACTC 60.128 42.308 18.56 0.00 35.30 3.36
2319 2694 3.016031 TCTGTCTTGCTCTGTTTTGCAA 58.984 40.909 0.00 0.00 45.40 4.08
2322 2697 3.380954 TGTCTTGCTCTGTTTTGCAATGA 59.619 39.130 0.00 0.00 46.20 2.57
2330 2705 5.333568 GCTCTGTTTTGCAATGACCAATTTC 60.334 40.000 0.00 0.00 0.00 2.17
2343 2718 9.710979 CAATGACCAATTTCATAATTTTCATGC 57.289 29.630 0.00 0.00 35.75 4.06
2346 2721 8.719648 TGACCAATTTCATAATTTTCATGCAAC 58.280 29.630 0.00 0.00 31.63 4.17
2362 2737 7.744087 TCATGCAACTATATACCATGTTTCC 57.256 36.000 0.00 0.00 35.85 3.13
2363 2738 7.286313 TCATGCAACTATATACCATGTTTCCA 58.714 34.615 0.00 0.00 35.85 3.53
2365 2740 8.579006 CATGCAACTATATACCATGTTTCCATT 58.421 33.333 0.00 0.00 0.00 3.16
2366 2741 8.532186 TGCAACTATATACCATGTTTCCATTT 57.468 30.769 0.00 0.00 0.00 2.32
2367 2742 8.412456 TGCAACTATATACCATGTTTCCATTTG 58.588 33.333 0.00 0.00 0.00 2.32
2368 2743 7.867403 GCAACTATATACCATGTTTCCATTTGG 59.133 37.037 0.00 0.00 0.00 3.28
2369 2744 7.524717 ACTATATACCATGTTTCCATTTGGC 57.475 36.000 0.00 0.00 34.44 4.52
2370 2745 3.799281 ATACCATGTTTCCATTTGGCG 57.201 42.857 0.00 0.00 34.44 5.69
2371 2746 1.337118 ACCATGTTTCCATTTGGCGT 58.663 45.000 0.00 0.00 34.44 5.68
2372 2747 1.000731 ACCATGTTTCCATTTGGCGTG 59.999 47.619 0.00 0.00 34.44 5.34
2412 2787 1.600023 TTGATGTGGGGACGAACAAC 58.400 50.000 0.00 0.00 0.00 3.32
2487 2862 0.324943 GCCAGGTTCCACTTCTGCTA 59.675 55.000 0.00 0.00 0.00 3.49
2489 2864 1.673033 CCAGGTTCCACTTCTGCTACG 60.673 57.143 0.00 0.00 0.00 3.51
2494 2869 0.320421 TCCACTTCTGCTACGTTGGC 60.320 55.000 0.00 0.00 0.00 4.52
2497 2872 0.393077 ACTTCTGCTACGTTGGCTGT 59.607 50.000 12.96 5.72 0.00 4.40
2500 2875 3.015293 CTGCTACGTTGGCTGTGCG 62.015 63.158 12.96 0.00 0.00 5.34
2510 2885 1.667830 GGCTGTGCGCAGTCAGTTA 60.668 57.895 26.29 0.00 46.06 2.24
2513 2888 1.502231 CTGTGCGCAGTCAGTTAACT 58.498 50.000 19.30 1.12 37.92 2.24
2514 2889 2.672714 CTGTGCGCAGTCAGTTAACTA 58.327 47.619 19.30 0.00 37.92 2.24
2515 2890 3.057019 CTGTGCGCAGTCAGTTAACTAA 58.943 45.455 19.30 0.00 37.92 2.24
2516 2891 3.459145 TGTGCGCAGTCAGTTAACTAAA 58.541 40.909 12.22 0.00 0.00 1.85
2540 2915 1.144503 GGCCATCAATCAGTCCCTCAT 59.855 52.381 0.00 0.00 0.00 2.90
2541 2916 2.228059 GCCATCAATCAGTCCCTCATG 58.772 52.381 0.00 0.00 0.00 3.07
2623 2998 1.656652 CCGTGAAGCAGAACTATGGG 58.343 55.000 0.00 0.00 0.00 4.00
2647 3022 2.789409 AGGTTCTTGTCCAGGTATGC 57.211 50.000 0.00 0.00 0.00 3.14
2744 3121 9.760077 TTCGACTTCTTATAGTTTGAAGACTTT 57.240 29.630 8.65 0.00 39.42 2.66
2857 3234 9.905713 TTTCTGGTTTCTGTATGCTTATCTATT 57.094 29.630 0.00 0.00 0.00 1.73
2902 3282 7.114388 CGGTAAAGAAGTTAACTTTGGAAATGC 59.886 37.037 21.40 6.79 37.96 3.56
2903 3283 7.114388 GGTAAAGAAGTTAACTTTGGAAATGCG 59.886 37.037 21.40 0.00 37.96 4.73
2931 3312 4.382320 GGAACGGCTGCGGTGGTA 62.382 66.667 13.78 0.00 0.00 3.25
2937 3318 3.431725 GCTGCGGTGGTACTTGCC 61.432 66.667 0.00 0.00 0.00 4.52
3075 3456 3.340928 TCATCATGGTTGCTTCTGACTG 58.659 45.455 0.00 0.00 0.00 3.51
3113 3494 2.509111 TACCAGCGCTGCGACATG 60.509 61.111 31.96 18.90 0.00 3.21
3125 3506 2.153645 TGCGACATGACAGATTGCTTT 58.846 42.857 0.00 0.00 0.00 3.51
3172 3553 6.940298 TGGTTAAGTGAAGATTTGTTAGGGAG 59.060 38.462 0.00 0.00 0.00 4.30
3177 3558 6.004574 AGTGAAGATTTGTTAGGGAGGTTTC 58.995 40.000 0.00 0.00 0.00 2.78
3365 3746 3.462483 TTCTGAGTCGTTGCCAAGTTA 57.538 42.857 0.00 0.00 0.00 2.24
3373 3754 6.034161 AGTCGTTGCCAAGTTAGTAAGTAT 57.966 37.500 0.00 0.00 0.00 2.12
3374 3755 7.094248 TGAGTCGTTGCCAAGTTAGTAAGTATA 60.094 37.037 0.00 0.00 0.00 1.47
3375 3756 7.605449 AGTCGTTGCCAAGTTAGTAAGTATAA 58.395 34.615 0.00 0.00 0.00 0.98
3377 3758 8.876790 GTCGTTGCCAAGTTAGTAAGTATAAAT 58.123 33.333 0.00 0.00 0.00 1.40
3378 3759 9.090692 TCGTTGCCAAGTTAGTAAGTATAAATC 57.909 33.333 0.00 0.00 0.00 2.17
3379 3760 8.875803 CGTTGCCAAGTTAGTAAGTATAAATCA 58.124 33.333 0.00 0.00 0.00 2.57
3435 3816 2.159462 GGCATTGCTGAACTAGTTGCTC 60.159 50.000 14.14 0.00 32.84 4.26
3446 3827 5.303078 TGAACTAGTTGCTCTGGAGATATCC 59.697 44.000 14.14 0.00 0.00 2.59
3476 3860 3.421844 AGTTGGCTGGTTTAACCTCATC 58.578 45.455 15.68 9.73 39.58 2.92
3538 3922 6.763303 AAAAATATTTCGGCTGTTGTGTTC 57.237 33.333 0.10 0.00 0.00 3.18
3574 3958 2.952310 ACAGGAAGAGGCTCACAAAAAC 59.048 45.455 18.26 0.00 0.00 2.43
3982 4429 3.426787 TTCCATGTGTTGATAACCGGT 57.573 42.857 0.00 0.00 0.00 5.28
3989 4436 3.244009 TGTGTTGATAACCGGTCCGTAAA 60.244 43.478 8.04 0.00 0.00 2.01
3996 4443 0.250793 ACCGGTCCGTAAATGATGCA 59.749 50.000 11.06 0.00 0.00 3.96
4004 4451 2.095969 CCGTAAATGATGCACGTTGTGT 60.096 45.455 0.00 0.00 35.75 3.72
4117 4564 1.412079 AGTGCCATCAAGGTGCAAAA 58.588 45.000 0.00 0.00 40.61 2.44
4121 4568 2.557924 TGCCATCAAGGTGCAAAACTAG 59.442 45.455 0.00 0.00 40.61 2.57
4135 4582 7.117956 GGTGCAAAACTAGAACTCTACTTTAGG 59.882 40.741 0.00 0.00 0.00 2.69
4143 4590 0.535335 CTCTACTTTAGGGGCGCACA 59.465 55.000 13.89 0.00 0.00 4.57
4144 4591 1.139058 CTCTACTTTAGGGGCGCACAT 59.861 52.381 13.89 7.19 0.00 3.21
4145 4592 2.364324 CTCTACTTTAGGGGCGCACATA 59.636 50.000 13.89 5.69 0.00 2.29
4146 4593 2.101917 TCTACTTTAGGGGCGCACATAC 59.898 50.000 13.89 0.00 0.00 2.39
4147 4594 0.616371 ACTTTAGGGGCGCACATACA 59.384 50.000 13.89 0.00 0.00 2.29
4148 4595 1.003812 ACTTTAGGGGCGCACATACAA 59.996 47.619 13.89 5.39 0.00 2.41
4149 4596 1.400494 CTTTAGGGGCGCACATACAAC 59.600 52.381 13.89 0.00 0.00 3.32
4150 4597 0.393267 TTAGGGGCGCACATACAACC 60.393 55.000 13.89 0.00 0.00 3.77
4151 4598 2.581208 TAGGGGCGCACATACAACCG 62.581 60.000 13.89 0.00 0.00 4.44
4152 4599 2.744709 GGGCGCACATACAACCGT 60.745 61.111 10.83 0.00 0.00 4.83
4153 4600 2.329614 GGGCGCACATACAACCGTT 61.330 57.895 10.83 0.00 0.00 4.44
4154 4601 1.154301 GGCGCACATACAACCGTTG 60.154 57.895 10.83 9.80 0.00 4.10
4155 4602 1.795962 GCGCACATACAACCGTTGC 60.796 57.895 11.29 0.00 0.00 4.17
4156 4603 1.508954 CGCACATACAACCGTTGCG 60.509 57.895 11.29 4.94 37.93 4.85
4157 4604 1.795962 GCACATACAACCGTTGCGC 60.796 57.895 11.29 0.00 0.00 6.09
4158 4605 1.571953 CACATACAACCGTTGCGCA 59.428 52.632 5.66 5.66 0.00 6.09
4159 4606 0.724453 CACATACAACCGTTGCGCAC 60.724 55.000 11.12 4.51 0.00 5.34
4160 4607 1.160946 ACATACAACCGTTGCGCACA 61.161 50.000 11.12 0.00 0.00 4.57
4161 4608 0.167908 CATACAACCGTTGCGCACAT 59.832 50.000 11.12 0.00 0.00 3.21
4162 4609 1.395262 CATACAACCGTTGCGCACATA 59.605 47.619 11.12 0.00 0.00 2.29
4163 4610 1.072391 TACAACCGTTGCGCACATAG 58.928 50.000 11.12 1.21 0.00 2.23
4164 4611 0.882927 ACAACCGTTGCGCACATAGT 60.883 50.000 11.12 1.99 0.00 2.12
4165 4612 0.452618 CAACCGTTGCGCACATAGTG 60.453 55.000 11.12 1.80 36.51 2.74
4166 4613 0.882927 AACCGTTGCGCACATAGTGT 60.883 50.000 11.12 0.00 35.75 3.55
4167 4614 0.882927 ACCGTTGCGCACATAGTGTT 60.883 50.000 11.12 0.00 35.75 3.32
4168 4615 0.179225 CCGTTGCGCACATAGTGTTC 60.179 55.000 11.12 0.00 35.75 3.18
4169 4616 0.179225 CGTTGCGCACATAGTGTTCC 60.179 55.000 11.12 0.00 35.75 3.62
4170 4617 0.871722 GTTGCGCACATAGTGTTCCA 59.128 50.000 11.12 0.00 35.75 3.53
4171 4618 0.871722 TTGCGCACATAGTGTTCCAC 59.128 50.000 11.12 0.00 35.75 4.02
4172 4619 0.250081 TGCGCACATAGTGTTCCACA 60.250 50.000 5.66 0.00 36.74 4.17
4173 4620 0.443869 GCGCACATAGTGTTCCACAG 59.556 55.000 0.30 0.00 36.74 3.66
4174 4621 1.795768 CGCACATAGTGTTCCACAGT 58.204 50.000 0.00 0.00 36.74 3.55
4175 4622 2.143122 CGCACATAGTGTTCCACAGTT 58.857 47.619 0.00 0.00 36.74 3.16
4176 4623 2.157668 CGCACATAGTGTTCCACAGTTC 59.842 50.000 0.00 0.00 36.74 3.01
4177 4624 3.403038 GCACATAGTGTTCCACAGTTCT 58.597 45.455 0.00 0.00 36.74 3.01
4178 4625 3.433615 GCACATAGTGTTCCACAGTTCTC 59.566 47.826 0.00 0.00 36.74 2.87
4179 4626 4.800914 GCACATAGTGTTCCACAGTTCTCT 60.801 45.833 0.00 0.00 36.74 3.10
4180 4627 5.300752 CACATAGTGTTCCACAGTTCTCTT 58.699 41.667 0.00 0.00 36.74 2.85
4181 4628 5.406780 CACATAGTGTTCCACAGTTCTCTTC 59.593 44.000 0.00 0.00 36.74 2.87
4182 4629 5.070446 ACATAGTGTTCCACAGTTCTCTTCA 59.930 40.000 0.00 0.00 36.74 3.02
4183 4630 4.487714 AGTGTTCCACAGTTCTCTTCAA 57.512 40.909 0.00 0.00 36.74 2.69
4184 4631 4.843728 AGTGTTCCACAGTTCTCTTCAAA 58.156 39.130 0.00 0.00 36.74 2.69
4185 4632 5.253330 AGTGTTCCACAGTTCTCTTCAAAA 58.747 37.500 0.00 0.00 36.74 2.44
4186 4633 5.710099 AGTGTTCCACAGTTCTCTTCAAAAA 59.290 36.000 0.00 0.00 36.74 1.94
4221 4668 6.003859 TCCAAAGTTCCAGTAAACACCTTA 57.996 37.500 0.00 0.00 0.00 2.69
4231 4678 8.763984 TCCAGTAAACACCTTATTTTTACCAA 57.236 30.769 0.00 0.00 36.69 3.67
4292 4739 1.344763 ACCGCACTAATAGGATCAGCC 59.655 52.381 0.00 0.00 0.00 4.85
4390 4837 7.482169 TGATAATTGTCACCAGAGAACTACT 57.518 36.000 0.03 0.00 28.91 2.57
4561 5008 7.942341 TCAGGTGGTATTCCATTAATGATAACC 59.058 37.037 17.23 16.57 46.20 2.85
4574 5021 8.464404 CATTAATGATAACCCTTATGCCATCAG 58.536 37.037 10.04 0.00 0.00 2.90
4592 5041 7.599621 TGCCATCAGTGATAAATCAAAGTTTTG 59.400 33.333 5.03 0.00 38.75 2.44
4651 5100 3.728076 ACGCCTAATCATATCGTGTGT 57.272 42.857 0.00 0.00 31.74 3.72
4655 5105 5.161358 CGCCTAATCATATCGTGTGTGTAT 58.839 41.667 0.00 0.00 0.00 2.29
4712 5162 6.071391 GCCCATTTGATCCGGTGAAATATAAT 60.071 38.462 0.00 0.00 0.00 1.28
4745 5195 0.402504 TACCCGCACAGGTTGGAAAT 59.597 50.000 0.00 0.00 41.58 2.17
4760 5211 0.309612 GAAATCACCCGTGTTTGCGT 59.690 50.000 0.00 0.00 0.00 5.24
4773 5224 4.647964 GTGTTTGCGTGTATTATCTGTGG 58.352 43.478 0.00 0.00 0.00 4.17
4776 5227 5.064579 TGTTTGCGTGTATTATCTGTGGATG 59.935 40.000 0.00 0.00 33.71 3.51
4786 5237 2.798976 TCTGTGGATGCTTTTTGTGC 57.201 45.000 0.00 0.00 0.00 4.57
4797 5248 3.431572 TGCTTTTTGTGCTTTGTGTGTTC 59.568 39.130 0.00 0.00 0.00 3.18
4801 5252 4.717233 TTTGTGCTTTGTGTGTTCTGAT 57.283 36.364 0.00 0.00 0.00 2.90
4819 5270 8.029522 TGTTCTGATAGTGTGAAGTTACTCATC 58.970 37.037 0.00 0.00 0.00 2.92
4950 5401 7.398829 TGCTGGTAATAATTCTACAAGAACCA 58.601 34.615 6.30 0.00 37.00 3.67
4951 5402 7.885922 TGCTGGTAATAATTCTACAAGAACCAA 59.114 33.333 6.30 0.00 37.00 3.67
4975 5430 6.084326 AGTGTTGTTCCAAATCAATGGTAC 57.916 37.500 0.00 0.00 41.46 3.34
5007 5462 2.079925 GTTGAACTGCTCTAAGCCTGG 58.920 52.381 0.00 0.00 41.51 4.45
5127 5582 4.903649 TCTCCAGCATCAGGAAGATATCAA 59.096 41.667 5.32 0.00 34.43 2.57
5193 5648 6.535508 CGGTAAAATCTTCTTTCCTAGACCTG 59.464 42.308 0.00 0.00 30.90 4.00
5374 5831 1.750930 CCATGGCGCCTCATACTCT 59.249 57.895 29.70 0.00 0.00 3.24
5376 5833 0.390492 CATGGCGCCTCATACTCTGA 59.610 55.000 29.70 2.45 0.00 3.27
5380 5837 0.390860 GCGCCTCATACTCTGACCAT 59.609 55.000 0.00 0.00 0.00 3.55
5381 5838 1.871408 GCGCCTCATACTCTGACCATG 60.871 57.143 0.00 0.00 0.00 3.66
5392 5849 7.933577 TCATACTCTGACCATGAATAATGTTCC 59.066 37.037 0.00 0.00 34.11 3.62
5395 5852 5.116180 TCTGACCATGAATAATGTTCCGTC 58.884 41.667 0.00 0.00 34.11 4.79
5411 5868 3.614092 TCCGTCGAACCTAGACTGTAAT 58.386 45.455 0.00 0.00 36.53 1.89
5418 5875 7.487189 CGTCGAACCTAGACTGTAATTTTGTAT 59.513 37.037 0.00 0.00 36.53 2.29
5443 5918 7.101054 TGTATGCTTGTTTAGTCGTATTTCCT 58.899 34.615 0.00 0.00 0.00 3.36
5465 5982 9.851686 TTCCTTTGTTATCATATTATGCACTCT 57.148 29.630 0.00 0.00 0.00 3.24
5488 6005 9.956720 CTCTTAAATGAACTTTATAATGGCAGG 57.043 33.333 0.00 0.00 0.00 4.85
5491 6008 2.948979 TGAACTTTATAATGGCAGGCCG 59.051 45.455 5.74 0.00 39.42 6.13
5511 6030 1.975680 GACACCCAGGTTTCAGGTCTA 59.024 52.381 0.00 0.00 0.00 2.59
5535 6054 6.097156 TGTAATCGTGTAATAAAGTTGCGG 57.903 37.500 0.00 0.00 0.00 5.69
5536 6055 5.868258 TGTAATCGTGTAATAAAGTTGCGGA 59.132 36.000 0.00 0.00 0.00 5.54
5560 6084 5.528690 ACATGTTGTGTATGATCATAGTGGC 59.471 40.000 15.83 5.01 39.91 5.01
5573 6097 7.118723 TGATCATAGTGGCATCCTTTACTTTT 58.881 34.615 0.00 0.00 0.00 2.27
5584 6108 6.403636 GCATCCTTTACTTTTGATGTGATCGT 60.404 38.462 0.00 0.00 37.51 3.73
5589 6113 8.116753 CCTTTACTTTTGATGTGATCGTATGAC 58.883 37.037 0.00 0.00 0.00 3.06
5608 6132 9.188588 CGTATGACGAATACAGTACCATTTTAT 57.811 33.333 11.63 0.00 46.05 1.40
5630 6154 8.504811 TTATGGGGAACTATCTGTTGATCATA 57.495 34.615 0.00 0.00 39.30 2.15
5631 6155 6.823286 TGGGGAACTATCTGTTGATCATAA 57.177 37.500 0.00 0.00 39.30 1.90
5647 6171 5.181811 TGATCATAAAGGTGTCTTGTGCAAG 59.818 40.000 5.63 5.63 39.71 4.01
5663 6187 1.269569 GCAAGCTTTTTACGTTGGGCT 60.270 47.619 0.00 0.00 0.00 5.19
5669 6193 3.489416 GCTTTTTACGTTGGGCTCAAAAG 59.511 43.478 0.00 0.53 35.33 2.27
5670 6194 3.719173 TTTTACGTTGGGCTCAAAAGG 57.281 42.857 0.00 0.00 34.28 3.11
5671 6195 1.611519 TTACGTTGGGCTCAAAAGGG 58.388 50.000 0.00 0.00 34.28 3.95
5673 6197 2.275380 CGTTGGGCTCAAAAGGGGG 61.275 63.158 0.00 0.00 34.28 5.40
5691 6215 2.140717 GGGAAGACAACTACACCAACG 58.859 52.381 0.00 0.00 0.00 4.10
5694 6218 4.370917 GGAAGACAACTACACCAACGTAA 58.629 43.478 0.00 0.00 0.00 3.18
5701 6225 5.234972 ACAACTACACCAACGTAAAGTAAGC 59.765 40.000 0.00 0.00 0.00 3.09
5703 6227 3.196939 ACACCAACGTAAAGTAAGCCA 57.803 42.857 0.00 0.00 0.00 4.75
5704 6228 2.874086 ACACCAACGTAAAGTAAGCCAC 59.126 45.455 0.00 0.00 0.00 5.01
5705 6229 2.096614 CACCAACGTAAAGTAAGCCACG 60.097 50.000 0.00 0.00 40.15 4.94
5707 6231 3.243704 ACCAACGTAAAGTAAGCCACGTA 60.244 43.478 0.00 0.00 46.05 3.57
5708 6232 3.121778 CCAACGTAAAGTAAGCCACGTAC 59.878 47.826 0.00 0.00 46.05 3.67
5710 6234 2.262211 CGTAAAGTAAGCCACGTACCC 58.738 52.381 0.00 0.00 0.00 3.69
5711 6235 2.262211 GTAAAGTAAGCCACGTACCCG 58.738 52.381 0.00 0.00 40.83 5.28
5718 6255 1.735559 GCCACGTACCCGTCTGAAC 60.736 63.158 0.00 0.00 46.28 3.18
5730 6267 1.787155 CGTCTGAACAAAGTCGACCTG 59.213 52.381 13.01 12.68 31.58 4.00
5733 6270 2.432874 TCTGAACAAAGTCGACCTGGAA 59.567 45.455 13.01 0.01 0.00 3.53
5755 6292 9.394767 TGGAATTTGAATTCTAGATGAAATCGA 57.605 29.630 14.20 0.00 45.01 3.59
5771 6318 9.690428 GATGAAATCGAACCACATTCAGCATGT 62.690 40.741 0.00 0.00 39.33 3.21
5797 6344 4.754114 ACTGAACAAAGTCTGATCTTGAGC 59.246 41.667 8.21 0.00 0.00 4.26
5798 6345 4.707105 TGAACAAAGTCTGATCTTGAGCA 58.293 39.130 8.21 0.00 0.00 4.26
5799 6346 5.125356 TGAACAAAGTCTGATCTTGAGCAA 58.875 37.500 8.21 0.00 0.00 3.91
5851 6485 0.318699 CGTGGTCTCAAACGAGCAGA 60.319 55.000 0.00 0.00 41.53 4.26
5871 6506 3.956199 AGACATTGATATTGCACAAGGGG 59.044 43.478 4.74 0.00 33.13 4.79
5890 6525 1.007387 CCCTTTGTTGCGCAGTTCC 60.007 57.895 11.31 0.43 0.00 3.62
5891 6526 1.370414 CCTTTGTTGCGCAGTTCCG 60.370 57.895 11.31 0.26 0.00 4.30
5926 6561 2.644798 AGGTTACTGGGTCTGCTGAAAT 59.355 45.455 0.00 0.00 0.00 2.17
5934 6569 3.718434 TGGGTCTGCTGAAATATGAGGAT 59.282 43.478 0.00 0.00 0.00 3.24
5950 6594 1.548973 GGATAATCGCGCTGACCACG 61.549 60.000 5.56 0.00 0.00 4.94
5968 6612 2.263540 GCCTTACACGGGCGAAGA 59.736 61.111 1.55 0.00 40.19 2.87
5971 6615 1.868519 GCCTTACACGGGCGAAGATAG 60.869 57.143 1.55 0.00 40.19 2.08
5983 6627 2.429610 GCGAAGATAGGTTACTGGGTCA 59.570 50.000 0.00 0.00 0.00 4.02
5994 6638 4.081087 GGTTACTGGGTCAGCTGAAAGATA 60.081 45.833 20.19 4.96 34.37 1.98
6004 6648 6.344500 GTCAGCTGAAAGATAAGGAGAATCA 58.656 40.000 20.19 0.00 32.23 2.57
6005 6649 6.991531 GTCAGCTGAAAGATAAGGAGAATCAT 59.008 38.462 20.19 0.00 32.23 2.45
6203 6847 4.219507 ACGTATATCTGCAGGATTCCTCTG 59.780 45.833 15.13 2.96 35.98 3.35
6215 6859 1.407656 TTCCTCTGGGTGTCAGCGTT 61.408 55.000 0.00 0.00 43.06 4.84
6221 6865 1.531149 CTGGGTGTCAGCGTTACAAAG 59.469 52.381 0.00 0.00 36.60 2.77
6227 6873 2.863740 TGTCAGCGTTACAAAGAGTGTG 59.136 45.455 0.00 0.00 41.89 3.82
6327 6973 6.045072 ACTATGACACTTATTTTGGGACGA 57.955 37.500 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.639286 CTTCAGTTGTGCACCGCC 59.361 61.111 15.69 1.57 0.00 6.13
57 58 5.334569 GCTGCTTTGAATTGTGAATGCAAAT 60.335 36.000 3.44 0.00 43.61 2.32
58 59 4.024725 GCTGCTTTGAATTGTGAATGCAAA 60.025 37.500 0.00 3.07 42.68 3.68
59 60 3.495377 GCTGCTTTGAATTGTGAATGCAA 59.505 39.130 0.00 0.00 34.59 4.08
60 61 3.061322 GCTGCTTTGAATTGTGAATGCA 58.939 40.909 0.00 0.00 32.93 3.96
61 62 2.091588 CGCTGCTTTGAATTGTGAATGC 59.908 45.455 0.00 0.00 0.00 3.56
62 63 3.311106 ACGCTGCTTTGAATTGTGAATG 58.689 40.909 0.00 0.00 0.00 2.67
63 64 3.568538 GACGCTGCTTTGAATTGTGAAT 58.431 40.909 0.00 0.00 0.00 2.57
64 65 2.601979 CGACGCTGCTTTGAATTGTGAA 60.602 45.455 0.00 0.00 0.00 3.18
108 109 1.068402 CACGTGATTGCCTGCATTCAA 60.068 47.619 10.90 3.67 37.83 2.69
109 110 0.522626 CACGTGATTGCCTGCATTCA 59.477 50.000 10.90 11.50 35.01 2.57
442 446 4.803426 CACCCTCTCTCGTGCGCC 62.803 72.222 4.18 0.00 0.00 6.53
447 451 0.114560 TTCTTCCCACCCTCTCTCGT 59.885 55.000 0.00 0.00 0.00 4.18
450 454 0.793617 TCCTTCTTCCCACCCTCTCT 59.206 55.000 0.00 0.00 0.00 3.10
451 455 1.199615 CTCCTTCTTCCCACCCTCTC 58.800 60.000 0.00 0.00 0.00 3.20
452 456 0.793617 TCTCCTTCTTCCCACCCTCT 59.206 55.000 0.00 0.00 0.00 3.69
453 457 1.199615 CTCTCCTTCTTCCCACCCTC 58.800 60.000 0.00 0.00 0.00 4.30
454 458 0.912006 GCTCTCCTTCTTCCCACCCT 60.912 60.000 0.00 0.00 0.00 4.34
455 459 1.604915 GCTCTCCTTCTTCCCACCC 59.395 63.158 0.00 0.00 0.00 4.61
456 460 1.219393 CGCTCTCCTTCTTCCCACC 59.781 63.158 0.00 0.00 0.00 4.61
457 461 1.448717 GCGCTCTCCTTCTTCCCAC 60.449 63.158 0.00 0.00 0.00 4.61
458 462 2.982130 GCGCTCTCCTTCTTCCCA 59.018 61.111 0.00 0.00 0.00 4.37
459 463 2.202810 CGCGCTCTCCTTCTTCCC 60.203 66.667 5.56 0.00 0.00 3.97
460 464 2.888051 GCGCGCTCTCCTTCTTCC 60.888 66.667 26.67 0.00 0.00 3.46
461 465 2.594119 TACGCGCGCTCTCCTTCTTC 62.594 60.000 32.58 0.00 0.00 2.87
462 466 2.697761 TACGCGCGCTCTCCTTCTT 61.698 57.895 32.58 8.80 0.00 2.52
463 467 3.132139 TACGCGCGCTCTCCTTCT 61.132 61.111 32.58 9.66 0.00 2.85
464 468 2.950194 GTACGCGCGCTCTCCTTC 60.950 66.667 32.58 2.76 0.00 3.46
465 469 4.831307 CGTACGCGCGCTCTCCTT 62.831 66.667 32.58 11.38 0.00 3.36
476 480 4.908877 GCCTCTCCTCGCGTACGC 62.909 72.222 29.83 29.83 39.84 4.42
477 481 4.592936 CGCCTCTCCTCGCGTACG 62.593 72.222 11.84 11.84 43.35 3.67
478 482 4.253257 CCGCCTCTCCTCGCGTAC 62.253 72.222 5.77 0.00 46.83 3.67
493 497 4.838152 CACATCCTCCACCGCCCG 62.838 72.222 0.00 0.00 0.00 6.13
494 498 4.489771 CCACATCCTCCACCGCCC 62.490 72.222 0.00 0.00 0.00 6.13
495 499 4.489771 CCCACATCCTCCACCGCC 62.490 72.222 0.00 0.00 0.00 6.13
496 500 3.391665 CTCCCACATCCTCCACCGC 62.392 68.421 0.00 0.00 0.00 5.68
497 501 1.680522 CTCTCCCACATCCTCCACCG 61.681 65.000 0.00 0.00 0.00 4.94
498 502 1.341156 CCTCTCCCACATCCTCCACC 61.341 65.000 0.00 0.00 0.00 4.61
499 503 0.325671 TCCTCTCCCACATCCTCCAC 60.326 60.000 0.00 0.00 0.00 4.02
500 504 0.031716 CTCCTCTCCCACATCCTCCA 60.032 60.000 0.00 0.00 0.00 3.86
501 505 1.406860 GCTCCTCTCCCACATCCTCC 61.407 65.000 0.00 0.00 0.00 4.30
502 506 1.743321 CGCTCCTCTCCCACATCCTC 61.743 65.000 0.00 0.00 0.00 3.71
503 507 1.760086 CGCTCCTCTCCCACATCCT 60.760 63.158 0.00 0.00 0.00 3.24
504 508 2.818132 CGCTCCTCTCCCACATCC 59.182 66.667 0.00 0.00 0.00 3.51
505 509 2.107953 GCGCTCCTCTCCCACATC 59.892 66.667 0.00 0.00 0.00 3.06
506 510 3.842923 CGCGCTCCTCTCCCACAT 61.843 66.667 5.56 0.00 0.00 3.21
524 528 2.892425 GAGAACCGCCATGAGCCG 60.892 66.667 0.00 0.00 38.78 5.52
525 529 1.817099 CAGAGAACCGCCATGAGCC 60.817 63.158 0.00 0.00 38.78 4.70
526 530 2.467826 GCAGAGAACCGCCATGAGC 61.468 63.158 0.00 0.00 38.52 4.26
527 531 0.809241 GAGCAGAGAACCGCCATGAG 60.809 60.000 0.00 0.00 0.00 2.90
528 532 1.219124 GAGCAGAGAACCGCCATGA 59.781 57.895 0.00 0.00 0.00 3.07
529 533 1.088340 CAGAGCAGAGAACCGCCATG 61.088 60.000 0.00 0.00 0.00 3.66
530 534 1.220206 CAGAGCAGAGAACCGCCAT 59.780 57.895 0.00 0.00 0.00 4.40
531 535 2.659016 CAGAGCAGAGAACCGCCA 59.341 61.111 0.00 0.00 0.00 5.69
532 536 2.817396 GCAGAGCAGAGAACCGCC 60.817 66.667 0.00 0.00 0.00 6.13
533 537 1.809209 GAGCAGAGCAGAGAACCGC 60.809 63.158 0.00 0.00 0.00 5.68
534 538 0.458197 CAGAGCAGAGCAGAGAACCG 60.458 60.000 0.00 0.00 0.00 4.44
535 539 0.740516 GCAGAGCAGAGCAGAGAACC 60.741 60.000 0.00 0.00 0.00 3.62
536 540 0.247185 AGCAGAGCAGAGCAGAGAAC 59.753 55.000 0.00 0.00 0.00 3.01
537 541 0.975135 AAGCAGAGCAGAGCAGAGAA 59.025 50.000 0.00 0.00 0.00 2.87
538 542 0.531657 GAAGCAGAGCAGAGCAGAGA 59.468 55.000 0.00 0.00 0.00 3.10
539 543 0.802994 CGAAGCAGAGCAGAGCAGAG 60.803 60.000 0.00 0.00 0.00 3.35
540 544 1.214853 CGAAGCAGAGCAGAGCAGA 59.785 57.895 0.00 0.00 0.00 4.26
541 545 1.810441 CCGAAGCAGAGCAGAGCAG 60.810 63.158 0.00 0.00 0.00 4.24
542 546 1.611474 ATCCGAAGCAGAGCAGAGCA 61.611 55.000 0.00 0.00 0.00 4.26
543 547 0.461693 AATCCGAAGCAGAGCAGAGC 60.462 55.000 0.00 0.00 0.00 4.09
544 548 1.664659 CAAATCCGAAGCAGAGCAGAG 59.335 52.381 0.00 0.00 0.00 3.35
545 549 1.676916 CCAAATCCGAAGCAGAGCAGA 60.677 52.381 0.00 0.00 0.00 4.26
546 550 0.731417 CCAAATCCGAAGCAGAGCAG 59.269 55.000 0.00 0.00 0.00 4.24
547 551 1.308069 GCCAAATCCGAAGCAGAGCA 61.308 55.000 0.00 0.00 0.00 4.26
548 552 1.028868 AGCCAAATCCGAAGCAGAGC 61.029 55.000 0.00 0.00 0.00 4.09
549 553 0.731417 CAGCCAAATCCGAAGCAGAG 59.269 55.000 0.00 0.00 0.00 3.35
550 554 1.308069 GCAGCCAAATCCGAAGCAGA 61.308 55.000 0.00 0.00 0.00 4.26
551 555 1.138247 GCAGCCAAATCCGAAGCAG 59.862 57.895 0.00 0.00 0.00 4.24
552 556 2.689785 CGCAGCCAAATCCGAAGCA 61.690 57.895 0.00 0.00 0.00 3.91
553 557 2.100991 CGCAGCCAAATCCGAAGC 59.899 61.111 0.00 0.00 0.00 3.86
575 579 0.691078 CCTTCCTTCCTCCATCCGGA 60.691 60.000 6.61 6.61 39.79 5.14
576 580 0.691078 TCCTTCCTTCCTCCATCCGG 60.691 60.000 0.00 0.00 0.00 5.14
577 581 0.755686 CTCCTTCCTTCCTCCATCCG 59.244 60.000 0.00 0.00 0.00 4.18
578 582 1.135960 CCTCCTTCCTTCCTCCATCC 58.864 60.000 0.00 0.00 0.00 3.51
579 583 2.046292 CTCCTCCTTCCTTCCTCCATC 58.954 57.143 0.00 0.00 0.00 3.51
580 584 1.344906 CCTCCTCCTTCCTTCCTCCAT 60.345 57.143 0.00 0.00 0.00 3.41
581 585 0.043334 CCTCCTCCTTCCTTCCTCCA 59.957 60.000 0.00 0.00 0.00 3.86
584 588 1.290732 CTCTCCTCCTCCTTCCTTCCT 59.709 57.143 0.00 0.00 0.00 3.36
585 589 1.289530 TCTCTCCTCCTCCTTCCTTCC 59.710 57.143 0.00 0.00 0.00 3.46
588 592 1.287739 CACTCTCTCCTCCTCCTTCCT 59.712 57.143 0.00 0.00 0.00 3.36
589 593 1.775385 CACTCTCTCCTCCTCCTTCC 58.225 60.000 0.00 0.00 0.00 3.46
593 597 2.124693 CGGCACTCTCTCCTCCTCC 61.125 68.421 0.00 0.00 0.00 4.30
594 598 2.781158 GCGGCACTCTCTCCTCCTC 61.781 68.421 0.00 0.00 0.00 3.71
625 629 3.621805 CAAAACCCAACCCGCCCC 61.622 66.667 0.00 0.00 0.00 5.80
626 630 2.522193 TCAAAACCCAACCCGCCC 60.522 61.111 0.00 0.00 0.00 6.13
627 631 0.898326 ATCTCAAAACCCAACCCGCC 60.898 55.000 0.00 0.00 0.00 6.13
628 632 0.243636 CATCTCAAAACCCAACCCGC 59.756 55.000 0.00 0.00 0.00 6.13
629 633 0.887933 CCATCTCAAAACCCAACCCG 59.112 55.000 0.00 0.00 0.00 5.28
630 634 1.266178 CCCATCTCAAAACCCAACCC 58.734 55.000 0.00 0.00 0.00 4.11
631 635 1.203125 TCCCCATCTCAAAACCCAACC 60.203 52.381 0.00 0.00 0.00 3.77
632 636 2.302587 TCCCCATCTCAAAACCCAAC 57.697 50.000 0.00 0.00 0.00 3.77
633 637 2.620367 CGATCCCCATCTCAAAACCCAA 60.620 50.000 0.00 0.00 0.00 4.12
634 638 1.064758 CGATCCCCATCTCAAAACCCA 60.065 52.381 0.00 0.00 0.00 4.51
635 639 1.211949 TCGATCCCCATCTCAAAACCC 59.788 52.381 0.00 0.00 0.00 4.11
636 640 2.092914 ACTCGATCCCCATCTCAAAACC 60.093 50.000 0.00 0.00 0.00 3.27
637 641 2.939103 CACTCGATCCCCATCTCAAAAC 59.061 50.000 0.00 0.00 0.00 2.43
638 642 2.092968 CCACTCGATCCCCATCTCAAAA 60.093 50.000 0.00 0.00 0.00 2.44
639 643 1.486310 CCACTCGATCCCCATCTCAAA 59.514 52.381 0.00 0.00 0.00 2.69
640 644 1.123077 CCACTCGATCCCCATCTCAA 58.877 55.000 0.00 0.00 0.00 3.02
641 645 0.760567 CCCACTCGATCCCCATCTCA 60.761 60.000 0.00 0.00 0.00 3.27
642 646 2.053618 CCCACTCGATCCCCATCTC 58.946 63.158 0.00 0.00 0.00 2.75
643 647 2.143419 GCCCACTCGATCCCCATCT 61.143 63.158 0.00 0.00 0.00 2.90
644 648 2.427753 GCCCACTCGATCCCCATC 59.572 66.667 0.00 0.00 0.00 3.51
645 649 3.171388 GGCCCACTCGATCCCCAT 61.171 66.667 0.00 0.00 0.00 4.00
675 679 0.752658 AAACACAGGCCTTTCCAAGC 59.247 50.000 0.00 0.00 37.29 4.01
676 680 3.457234 GAAAAACACAGGCCTTTCCAAG 58.543 45.455 0.00 0.00 37.29 3.61
677 681 2.169561 GGAAAAACACAGGCCTTTCCAA 59.830 45.455 21.80 0.00 44.14 3.53
678 682 1.760029 GGAAAAACACAGGCCTTTCCA 59.240 47.619 21.80 0.00 44.14 3.53
679 683 1.760029 TGGAAAAACACAGGCCTTTCC 59.240 47.619 20.47 20.47 44.70 3.13
680 684 2.224042 CCTGGAAAAACACAGGCCTTTC 60.224 50.000 0.00 2.71 46.78 2.62
681 685 1.762370 CCTGGAAAAACACAGGCCTTT 59.238 47.619 0.00 0.00 46.78 3.11
682 686 1.413118 CCTGGAAAAACACAGGCCTT 58.587 50.000 0.00 0.00 46.78 4.35
683 687 3.131850 CCTGGAAAAACACAGGCCT 57.868 52.632 0.00 0.00 46.78 5.19
687 691 1.338020 GAGCCACCTGGAAAAACACAG 59.662 52.381 0.00 0.00 37.39 3.66
688 692 1.398692 GAGCCACCTGGAAAAACACA 58.601 50.000 0.00 0.00 37.39 3.72
689 693 0.310854 CGAGCCACCTGGAAAAACAC 59.689 55.000 0.00 0.00 37.39 3.32
690 694 0.821711 CCGAGCCACCTGGAAAAACA 60.822 55.000 0.00 0.00 37.39 2.83
691 695 1.956802 CCGAGCCACCTGGAAAAAC 59.043 57.895 0.00 0.00 37.39 2.43
692 696 1.901464 GCCGAGCCACCTGGAAAAA 60.901 57.895 0.00 0.00 37.39 1.94
693 697 2.282180 GCCGAGCCACCTGGAAAA 60.282 61.111 0.00 0.00 37.39 2.29
755 759 3.736482 GAGAGGCCGCGACACGTAG 62.736 68.421 8.23 0.00 41.42 3.51
1145 1160 3.202001 CAAGGTGGCCGCCGTATG 61.202 66.667 29.37 23.86 0.00 2.39
1146 1161 3.262448 AACAAGGTGGCCGCCGTAT 62.262 57.895 29.37 13.88 0.00 3.06
1147 1162 3.887335 GAACAAGGTGGCCGCCGTA 62.887 63.158 29.37 0.00 0.00 4.02
1203 1230 9.319143 CAGATTGATTAACCAAGTTCTAGGTAG 57.681 37.037 0.00 0.00 37.07 3.18
1223 1252 2.177950 GAGTGGCCACTGCAGATTG 58.822 57.895 42.40 9.25 42.66 2.67
1425 1454 0.039472 AGAGAGCTGAGCTGACCTGA 59.961 55.000 13.71 0.00 39.88 3.86
1432 1461 1.752694 GTCCGGAGAGAGCTGAGCT 60.753 63.158 6.69 6.69 43.88 4.09
1437 1466 2.780094 CGCATGTCCGGAGAGAGCT 61.780 63.158 21.34 0.00 0.00 4.09
1438 1467 2.279120 CGCATGTCCGGAGAGAGC 60.279 66.667 3.06 11.84 0.00 4.09
1439 1468 1.226802 CACGCATGTCCGGAGAGAG 60.227 63.158 3.06 1.12 0.00 3.20
1440 1469 2.885113 CACGCATGTCCGGAGAGA 59.115 61.111 3.06 0.00 0.00 3.10
1442 1471 2.906182 GATGCACGCATGTCCGGAGA 62.906 60.000 3.06 2.85 36.70 3.71
1444 1473 2.511373 GATGCACGCATGTCCGGA 60.511 61.111 9.70 0.00 36.70 5.14
1445 1474 3.576356 GGATGCACGCATGTCCGG 61.576 66.667 9.70 0.00 36.70 5.14
1447 1476 0.745845 AAGAGGATGCACGCATGTCC 60.746 55.000 9.70 6.40 36.70 4.02
1448 1477 1.863454 CTAAGAGGATGCACGCATGTC 59.137 52.381 9.70 6.09 36.70 3.06
1449 1478 1.473965 CCTAAGAGGATGCACGCATGT 60.474 52.381 9.70 0.00 37.67 3.21
1450 1479 1.224075 CCTAAGAGGATGCACGCATG 58.776 55.000 9.70 0.00 37.67 4.06
1451 1480 0.533755 GCCTAAGAGGATGCACGCAT 60.534 55.000 3.71 3.71 37.67 4.73
1452 1481 1.153369 GCCTAAGAGGATGCACGCA 60.153 57.895 0.00 0.00 37.67 5.24
1453 1482 0.533755 ATGCCTAAGAGGATGCACGC 60.534 55.000 0.00 0.00 37.67 5.34
1454 1483 1.224075 CATGCCTAAGAGGATGCACG 58.776 55.000 0.00 0.00 37.67 5.34
1455 1484 2.216898 GACATGCCTAAGAGGATGCAC 58.783 52.381 0.00 0.00 37.67 4.57
1456 1485 1.839354 TGACATGCCTAAGAGGATGCA 59.161 47.619 0.00 0.00 37.67 3.96
1462 1491 4.574013 GGTGAAAGATGACATGCCTAAGAG 59.426 45.833 0.00 0.00 0.00 2.85
1463 1492 4.517285 GGTGAAAGATGACATGCCTAAGA 58.483 43.478 0.00 0.00 0.00 2.10
1464 1493 3.629398 GGGTGAAAGATGACATGCCTAAG 59.371 47.826 0.00 0.00 0.00 2.18
1465 1494 3.266772 AGGGTGAAAGATGACATGCCTAA 59.733 43.478 0.00 0.00 0.00 2.69
1466 1495 2.846206 AGGGTGAAAGATGACATGCCTA 59.154 45.455 0.00 0.00 0.00 3.93
1467 1496 1.637553 AGGGTGAAAGATGACATGCCT 59.362 47.619 0.00 0.00 0.00 4.75
1468 1497 2.134789 AGGGTGAAAGATGACATGCC 57.865 50.000 0.00 0.00 0.00 4.40
1469 1498 2.165030 CCAAGGGTGAAAGATGACATGC 59.835 50.000 0.00 0.00 0.00 4.06
1470 1499 2.165030 GCCAAGGGTGAAAGATGACATG 59.835 50.000 0.00 0.00 0.00 3.21
1472 1501 1.881925 CGCCAAGGGTGAAAGATGACA 60.882 52.381 0.00 0.00 34.74 3.58
1473 1502 0.804989 CGCCAAGGGTGAAAGATGAC 59.195 55.000 0.00 0.00 34.74 3.06
1475 1504 1.068333 CAACGCCAAGGGTGAAAGATG 60.068 52.381 2.32 0.00 36.58 2.90
1476 1505 1.202879 TCAACGCCAAGGGTGAAAGAT 60.203 47.619 2.32 0.00 36.58 2.40
1477 1506 0.181587 TCAACGCCAAGGGTGAAAGA 59.818 50.000 2.32 0.00 36.58 2.52
1478 1507 1.068333 CATCAACGCCAAGGGTGAAAG 60.068 52.381 2.32 0.00 36.58 2.62
1480 1509 1.523154 GCATCAACGCCAAGGGTGAA 61.523 55.000 2.32 0.00 36.58 3.18
1481 1510 1.971167 GCATCAACGCCAAGGGTGA 60.971 57.895 2.32 0.00 36.58 4.02
1491 1520 0.723414 AACAGATCAGCGCATCAACG 59.277 50.000 11.47 0.36 0.00 4.10
1492 1521 2.095567 ACAAACAGATCAGCGCATCAAC 60.096 45.455 11.47 0.00 0.00 3.18
1493 1522 2.153645 ACAAACAGATCAGCGCATCAA 58.846 42.857 11.47 0.00 0.00 2.57
1494 1523 1.812235 ACAAACAGATCAGCGCATCA 58.188 45.000 11.47 0.00 0.00 3.07
1496 1525 2.923605 GCAAACAAACAGATCAGCGCAT 60.924 45.455 11.47 0.00 0.00 4.73
1503 1540 4.067896 TCTCTCCTGCAAACAAACAGATC 58.932 43.478 0.00 0.00 35.90 2.75
1525 1562 4.224818 AGCTTGTAGAAGAGCCTCTCATTT 59.775 41.667 3.33 0.00 39.71 2.32
1528 1565 2.757868 GAGCTTGTAGAAGAGCCTCTCA 59.242 50.000 3.33 0.00 39.71 3.27
1645 1693 5.417580 GTCTTTGAGACTGATGTAGAGACCT 59.582 44.000 0.97 0.00 41.88 3.85
1648 1696 6.491745 ACTTGTCTTTGAGACTGATGTAGAGA 59.508 38.462 9.27 0.00 45.27 3.10
1678 1726 9.604626 CTGAAAACTTAAGTGAAATGATCAGAC 57.395 33.333 9.34 0.00 39.19 3.51
1687 1735 9.921637 ATGTGAAAACTGAAAACTTAAGTGAAA 57.078 25.926 9.34 0.00 0.00 2.69
1689 1737 7.973388 CCATGTGAAAACTGAAAACTTAAGTGA 59.027 33.333 9.34 0.00 0.00 3.41
1690 1738 7.254084 GCCATGTGAAAACTGAAAACTTAAGTG 60.254 37.037 9.34 0.00 0.00 3.16
1691 1739 6.756542 GCCATGTGAAAACTGAAAACTTAAGT 59.243 34.615 1.12 1.12 0.00 2.24
1692 1740 6.200854 GGCCATGTGAAAACTGAAAACTTAAG 59.799 38.462 0.00 0.00 0.00 1.85
1693 1741 6.045955 GGCCATGTGAAAACTGAAAACTTAA 58.954 36.000 0.00 0.00 0.00 1.85
1694 1742 5.596845 GGCCATGTGAAAACTGAAAACTTA 58.403 37.500 0.00 0.00 0.00 2.24
1695 1743 4.441792 GGCCATGTGAAAACTGAAAACTT 58.558 39.130 0.00 0.00 0.00 2.66
1696 1744 3.490761 CGGCCATGTGAAAACTGAAAACT 60.491 43.478 2.24 0.00 0.00 2.66
1697 1745 2.794350 CGGCCATGTGAAAACTGAAAAC 59.206 45.455 2.24 0.00 0.00 2.43
1698 1746 2.223923 CCGGCCATGTGAAAACTGAAAA 60.224 45.455 2.24 0.00 0.00 2.29
1699 1747 1.339610 CCGGCCATGTGAAAACTGAAA 59.660 47.619 2.24 0.00 0.00 2.69
1700 1748 0.958091 CCGGCCATGTGAAAACTGAA 59.042 50.000 2.24 0.00 0.00 3.02
1701 1749 0.109532 TCCGGCCATGTGAAAACTGA 59.890 50.000 2.24 0.00 0.00 3.41
1702 1750 0.523072 CTCCGGCCATGTGAAAACTG 59.477 55.000 2.24 0.00 0.00 3.16
1703 1751 0.609131 CCTCCGGCCATGTGAAAACT 60.609 55.000 2.24 0.00 0.00 2.66
1704 1752 1.883021 CCTCCGGCCATGTGAAAAC 59.117 57.895 2.24 0.00 0.00 2.43
1718 1775 3.274288 CTTGATACAGAAACTGGCCTCC 58.726 50.000 3.32 0.00 35.51 4.30
1720 1777 3.327757 TCACTTGATACAGAAACTGGCCT 59.672 43.478 3.32 0.00 35.51 5.19
1734 1791 2.031682 GCAAGCGTTTCACTCACTTGAT 60.032 45.455 5.30 0.00 40.06 2.57
1752 1820 1.999071 GCAACAGGAACACCACGCAA 61.999 55.000 0.00 0.00 0.00 4.85
1763 1831 0.543277 CCCTAGCATCAGCAACAGGA 59.457 55.000 0.00 0.00 45.49 3.86
1778 1846 1.997340 ACTCCAGTACTCTCCCCCTA 58.003 55.000 0.00 0.00 0.00 3.53
1797 1865 2.032528 CGGCCAGTTCCTCAGCAA 59.967 61.111 2.24 0.00 0.00 3.91
1883 1951 4.819105 AATAATTCCGTGACTGACCTGA 57.181 40.909 0.00 0.00 0.00 3.86
1906 1977 7.286775 ACCAAGCCAATAACTTTCAGTTAAAGA 59.713 33.333 3.81 0.00 46.44 2.52
1910 1981 5.278758 GCACCAAGCCAATAACTTTCAGTTA 60.279 40.000 0.00 0.00 40.09 2.24
1911 1982 4.501400 GCACCAAGCCAATAACTTTCAGTT 60.501 41.667 0.00 0.00 38.62 3.16
1942 2016 7.786030 TGAAACTGAAATCCAAAACCATGTTA 58.214 30.769 0.00 0.00 0.00 2.41
1986 2060 9.480053 AAAATCAAAATCACTGATGAATTTCGT 57.520 25.926 0.00 0.00 36.07 3.85
1993 2067 9.131416 CGAAATGAAAATCAAAATCACTGATGA 57.869 29.630 0.00 0.00 39.83 2.92
1994 2068 8.377681 CCGAAATGAAAATCAAAATCACTGATG 58.622 33.333 0.00 0.00 33.76 3.07
1995 2069 8.090214 ACCGAAATGAAAATCAAAATCACTGAT 58.910 29.630 0.00 0.00 34.97 2.90
1996 2070 7.432869 ACCGAAATGAAAATCAAAATCACTGA 58.567 30.769 0.00 0.00 0.00 3.41
1997 2071 7.381948 TGACCGAAATGAAAATCAAAATCACTG 59.618 33.333 0.00 0.00 0.00 3.66
1998 2072 7.432869 TGACCGAAATGAAAATCAAAATCACT 58.567 30.769 0.00 0.00 0.00 3.41
1999 2073 7.636259 TGACCGAAATGAAAATCAAAATCAC 57.364 32.000 0.00 0.00 0.00 3.06
2000 2074 8.654230 TTTGACCGAAATGAAAATCAAAATCA 57.346 26.923 0.00 0.00 34.16 2.57
2001 2075 7.741652 GCTTTGACCGAAATGAAAATCAAAATC 59.258 33.333 0.00 0.00 36.07 2.17
2002 2076 7.226325 TGCTTTGACCGAAATGAAAATCAAAAT 59.774 29.630 0.00 0.00 36.07 1.82
2003 2077 6.536582 TGCTTTGACCGAAATGAAAATCAAAA 59.463 30.769 0.00 0.00 36.07 2.44
2004 2078 6.019156 GTGCTTTGACCGAAATGAAAATCAAA 60.019 34.615 0.00 0.00 35.42 2.69
2005 2079 5.461737 GTGCTTTGACCGAAATGAAAATCAA 59.538 36.000 0.00 0.00 0.00 2.57
2006 2080 4.981674 GTGCTTTGACCGAAATGAAAATCA 59.018 37.500 0.00 0.00 0.00 2.57
2007 2081 4.385748 GGTGCTTTGACCGAAATGAAAATC 59.614 41.667 0.00 0.00 0.00 2.17
2008 2082 4.306600 GGTGCTTTGACCGAAATGAAAAT 58.693 39.130 0.00 0.00 0.00 1.82
2019 2093 3.489416 GTGAAAATTTCGGTGCTTTGACC 59.511 43.478 0.97 0.00 0.00 4.02
2027 2101 6.033341 TCAGTTTCAAGTGAAAATTTCGGTG 58.967 36.000 8.01 0.00 44.58 4.94
2038 2112 5.868454 TGGATCTCAATCAGTTTCAAGTGA 58.132 37.500 0.00 0.00 42.14 3.41
2087 2161 9.747898 TCTGTAGTACCCACAAATTCAAATTAT 57.252 29.630 0.00 0.00 0.00 1.28
2111 2185 7.601856 TCGGTCAAAATATTTCAGCAATTTCT 58.398 30.769 0.10 0.00 0.00 2.52
2112 2186 7.810766 TCGGTCAAAATATTTCAGCAATTTC 57.189 32.000 0.10 0.00 0.00 2.17
2154 2238 7.304735 TCGTGTGATTTCATCGAAATTTCATT 58.695 30.769 17.99 1.73 41.56 2.57
2156 2240 6.234723 TCGTGTGATTTCATCGAAATTTCA 57.765 33.333 17.99 5.97 41.56 2.69
2158 2242 7.271223 GTCATTCGTGTGATTTCATCGAAATTT 59.729 33.333 19.16 0.00 41.56 1.82
2161 2245 5.390461 GGTCATTCGTGTGATTTCATCGAAA 60.390 40.000 19.16 8.32 42.73 3.46
2163 2247 3.616821 GGTCATTCGTGTGATTTCATCGA 59.383 43.478 0.00 0.00 34.98 3.59
2196 2290 0.032912 ATGCCCTGCACATGATGGAA 60.033 50.000 0.00 0.00 43.04 3.53
2261 2356 0.108186 TTACAGCAGATGGCCTGACG 60.108 55.000 3.32 0.00 45.78 4.35
2287 2382 3.416156 AGCAAGACAGAGTCCAAATTCC 58.584 45.455 0.00 0.00 32.18 3.01
2288 2383 4.153835 CAGAGCAAGACAGAGTCCAAATTC 59.846 45.833 0.00 0.00 32.18 2.17
2299 2674 3.425577 TTGCAAAACAGAGCAAGACAG 57.574 42.857 0.00 0.00 44.98 3.51
2319 2694 9.451002 TTGCATGAAAATTATGAAATTGGTCAT 57.549 25.926 0.00 0.00 39.21 3.06
2322 2697 8.851541 AGTTGCATGAAAATTATGAAATTGGT 57.148 26.923 0.00 0.00 35.46 3.67
2355 2730 0.037419 GGCACGCCAAATGGAAACAT 60.037 50.000 2.98 0.00 44.63 2.71
2356 2731 1.365633 GGCACGCCAAATGGAAACA 59.634 52.632 2.98 0.00 39.81 2.83
2357 2732 0.667184 CTGGCACGCCAAATGGAAAC 60.667 55.000 12.67 0.00 46.63 2.78
2361 2736 2.086251 AACACTGGCACGCCAAATGG 62.086 55.000 20.44 9.47 46.63 3.16
2362 2737 0.249405 AAACACTGGCACGCCAAATG 60.249 50.000 12.67 15.06 46.63 2.32
2363 2738 1.000717 GTAAACACTGGCACGCCAAAT 60.001 47.619 12.67 0.11 46.63 2.32
2365 2740 1.448922 GGTAAACACTGGCACGCCAA 61.449 55.000 12.67 0.00 46.63 4.52
2366 2741 1.894756 GGTAAACACTGGCACGCCA 60.895 57.895 10.95 10.95 45.02 5.69
2367 2742 2.622962 GGGTAAACACTGGCACGCC 61.623 63.158 0.00 0.00 0.00 5.68
2368 2743 1.241315 ATGGGTAAACACTGGCACGC 61.241 55.000 0.00 0.00 0.00 5.34
2369 2744 0.802494 GATGGGTAAACACTGGCACG 59.198 55.000 0.00 0.00 0.00 5.34
2370 2745 1.539827 GTGATGGGTAAACACTGGCAC 59.460 52.381 0.00 0.00 0.00 5.01
2371 2746 1.546773 GGTGATGGGTAAACACTGGCA 60.547 52.381 0.00 0.00 35.28 4.92
2372 2747 1.173913 GGTGATGGGTAAACACTGGC 58.826 55.000 0.00 0.00 35.28 4.85
2412 2787 3.181505 ACTCATCGTTCAGTAGCTCTTCG 60.182 47.826 0.00 0.00 0.00 3.79
2466 2841 1.672356 CAGAAGTGGAACCTGGCCG 60.672 63.158 0.00 0.00 37.80 6.13
2497 2872 5.293324 CCATATTTAGTTAACTGACTGCGCA 59.707 40.000 18.56 10.98 0.00 6.09
2500 2875 5.588648 TGGCCATATTTAGTTAACTGACTGC 59.411 40.000 18.56 10.63 0.00 4.40
2510 2885 6.491403 GGACTGATTGATGGCCATATTTAGTT 59.509 38.462 20.84 0.81 0.00 2.24
2513 2888 5.074929 AGGGACTGATTGATGGCCATATTTA 59.925 40.000 20.84 4.53 37.18 1.40
2514 2889 4.140853 AGGGACTGATTGATGGCCATATTT 60.141 41.667 20.84 5.78 37.18 1.40
2515 2890 3.400322 AGGGACTGATTGATGGCCATATT 59.600 43.478 20.84 6.20 37.18 1.28
2516 2891 2.991713 AGGGACTGATTGATGGCCATAT 59.008 45.455 20.84 9.86 37.18 1.78
2540 2915 3.225104 AGCAGGCAAAAGAGATGAAACA 58.775 40.909 0.00 0.00 0.00 2.83
2541 2916 3.930634 AGCAGGCAAAAGAGATGAAAC 57.069 42.857 0.00 0.00 0.00 2.78
2623 2998 1.202818 ACCTGGACAAGAACCTTCTGC 60.203 52.381 0.00 0.00 37.65 4.26
2647 3022 5.793030 ATGAGGGTTCTTCCTACTATTCG 57.207 43.478 0.00 0.00 37.25 3.34
2744 3121 1.284657 CAAACGCATTGTGGTTTGCA 58.715 45.000 16.75 0.00 44.26 4.08
2750 3127 0.667184 GAAGGGCAAACGCATTGTGG 60.667 55.000 1.77 0.00 41.32 4.17
2763 3140 2.338500 CTTGTACTTGTCGAGAAGGGC 58.662 52.381 24.39 16.65 0.00 5.19
2857 3234 3.760151 ACCGTTGCACAGTACAGTAGATA 59.240 43.478 0.00 0.00 0.00 1.98
2881 3258 5.068591 ACCGCATTTCCAAAGTTAACTTCTT 59.931 36.000 20.78 4.00 34.61 2.52
2902 3282 1.087771 GCCGTTCCCTGTGAATACCG 61.088 60.000 0.00 0.00 34.90 4.02
2903 3283 0.252197 AGCCGTTCCCTGTGAATACC 59.748 55.000 0.00 0.00 34.90 2.73
3075 3456 3.209410 AGATGCTTATACACTTGGCAGC 58.791 45.455 0.00 0.00 39.22 5.25
3113 3494 8.801913 GTTAATAAGAATGCAAAGCAATCTGTC 58.198 33.333 10.04 0.00 46.43 3.51
3172 3553 8.696410 TCTGTTACTGTTTTTGAATTGAAACC 57.304 30.769 0.00 0.00 35.44 3.27
3177 3558 8.870160 TTCCATCTGTTACTGTTTTTGAATTG 57.130 30.769 0.00 0.00 0.00 2.32
3247 3628 9.856488 CAAGAAGCAACTTGAACTAGTACTATA 57.144 33.333 14.79 0.00 46.85 1.31
3335 3716 4.154195 GCAACGACTCAGAAACCATTACAT 59.846 41.667 0.00 0.00 0.00 2.29
3353 3734 8.875803 TGATTTATACTTACTAACTTGGCAACG 58.124 33.333 0.00 0.00 42.51 4.10
3365 3746 7.888546 ACAGTTGGGCTTTGATTTATACTTACT 59.111 33.333 0.00 0.00 0.00 2.24
3373 3754 7.175104 AGAATAGACAGTTGGGCTTTGATTTA 58.825 34.615 0.00 0.00 0.00 1.40
3374 3755 6.012745 AGAATAGACAGTTGGGCTTTGATTT 58.987 36.000 0.00 0.00 0.00 2.17
3375 3756 5.574188 AGAATAGACAGTTGGGCTTTGATT 58.426 37.500 0.00 0.00 0.00 2.57
3377 3758 4.640771 AGAATAGACAGTTGGGCTTTGA 57.359 40.909 0.00 0.00 0.00 2.69
3378 3759 5.464168 CAAAGAATAGACAGTTGGGCTTTG 58.536 41.667 0.00 0.00 36.28 2.77
3379 3760 4.021981 GCAAAGAATAGACAGTTGGGCTTT 60.022 41.667 0.00 0.00 0.00 3.51
3380 3761 3.507622 GCAAAGAATAGACAGTTGGGCTT 59.492 43.478 0.00 0.00 0.00 4.35
3446 3827 0.322816 ACCAGCCAACTACCTGCATG 60.323 55.000 0.00 0.00 0.00 4.06
3476 3860 3.058432 CACACTCTCCAAAGCACAATCAG 60.058 47.826 0.00 0.00 0.00 2.90
3538 3922 1.694150 TCCTGTGAAGTCTTGGACTGG 59.306 52.381 0.74 9.46 42.59 4.00
3567 3951 4.734398 TCAACAAGCCAGATGTTTTTGT 57.266 36.364 0.00 0.00 38.90 2.83
3574 3958 4.021719 ACCTTTGAATCAACAAGCCAGATG 60.022 41.667 0.00 0.00 0.00 2.90
3982 4429 2.158645 CACAACGTGCATCATTTACGGA 59.841 45.455 0.00 0.00 41.74 4.69
3989 4436 1.066757 TGCAAACACAACGTGCATCAT 59.933 42.857 0.00 0.00 43.09 2.45
3996 4443 1.066908 CAATCCCTGCAAACACAACGT 59.933 47.619 0.00 0.00 0.00 3.99
4004 4451 2.290260 ACTCACGATCAATCCCTGCAAA 60.290 45.455 0.00 0.00 0.00 3.68
4117 4564 3.952967 CGCCCCTAAAGTAGAGTTCTAGT 59.047 47.826 0.00 0.00 33.74 2.57
4121 4568 1.206371 TGCGCCCCTAAAGTAGAGTTC 59.794 52.381 4.18 0.00 0.00 3.01
4135 4582 2.329614 AACGGTTGTATGTGCGCCC 61.330 57.895 4.18 0.00 0.00 6.13
4143 4590 1.663643 CTATGTGCGCAACGGTTGTAT 59.336 47.619 14.00 10.86 0.00 2.29
4144 4591 1.072391 CTATGTGCGCAACGGTTGTA 58.928 50.000 14.00 6.62 0.00 2.41
4145 4592 0.882927 ACTATGTGCGCAACGGTTGT 60.883 50.000 14.00 3.74 0.00 3.32
4146 4593 0.452618 CACTATGTGCGCAACGGTTG 60.453 55.000 14.00 16.35 0.00 3.77
4147 4594 0.882927 ACACTATGTGCGCAACGGTT 60.883 50.000 14.00 0.00 36.98 4.44
4148 4595 0.882927 AACACTATGTGCGCAACGGT 60.883 50.000 14.00 6.17 36.98 4.83
4149 4596 0.179225 GAACACTATGTGCGCAACGG 60.179 55.000 14.00 5.44 36.98 4.44
4150 4597 0.179225 GGAACACTATGTGCGCAACG 60.179 55.000 14.00 2.94 36.98 4.10
4151 4598 0.871722 TGGAACACTATGTGCGCAAC 59.128 50.000 14.00 7.43 36.98 4.17
4152 4599 3.314083 TGGAACACTATGTGCGCAA 57.686 47.368 14.00 2.60 36.98 4.85
4187 4634 7.418337 ACTGGAACTTTGGAACACTATTTTT 57.582 32.000 0.00 0.00 39.29 1.94
4188 4635 8.528044 TTACTGGAACTTTGGAACACTATTTT 57.472 30.769 0.00 0.00 39.29 1.82
4189 4636 8.410912 GTTTACTGGAACTTTGGAACACTATTT 58.589 33.333 0.00 0.00 39.29 1.40
4190 4637 7.558444 TGTTTACTGGAACTTTGGAACACTATT 59.442 33.333 0.00 0.00 39.29 1.73
4221 4668 3.636300 TCAGTGTGCTGCTTGGTAAAAAT 59.364 39.130 0.00 0.00 42.29 1.82
4231 4678 2.211250 ATGGAAATCAGTGTGCTGCT 57.789 45.000 0.00 0.00 42.29 4.24
4292 4739 1.064952 GTGAAACTTTGACCCACACCG 59.935 52.381 0.00 0.00 0.00 4.94
4390 4837 2.665165 ACAAAGGCAGGTTGACAATGA 58.335 42.857 0.00 0.00 0.00 2.57
4561 5008 7.514784 TTGATTTATCACTGATGGCATAAGG 57.485 36.000 16.30 5.52 36.36 2.69
4574 5021 9.132521 CATCTGACCAAAACTTTGATTTATCAC 57.867 33.333 3.72 0.00 40.55 3.06
4592 5041 4.803253 AGATGTAGCATCATGCATCTGACC 60.803 45.833 13.38 0.00 46.70 4.02
4651 5100 1.219664 GCACGGCCCTACACATACA 59.780 57.895 0.00 0.00 0.00 2.29
4655 5105 0.544223 ATATTGCACGGCCCTACACA 59.456 50.000 0.00 0.00 0.00 3.72
4712 5162 1.938016 GCGGGTACGAAAAGCTTCTCA 60.938 52.381 0.00 0.00 44.60 3.27
4760 5211 7.537715 CACAAAAAGCATCCACAGATAATACA 58.462 34.615 0.00 0.00 0.00 2.29
4773 5224 3.618150 ACACACAAAGCACAAAAAGCATC 59.382 39.130 0.00 0.00 0.00 3.91
4776 5227 3.679502 AGAACACACAAAGCACAAAAAGC 59.320 39.130 0.00 0.00 0.00 3.51
4786 5237 6.258727 ACTTCACACTATCAGAACACACAAAG 59.741 38.462 0.00 0.00 0.00 2.77
4797 5248 7.148000 TGGAGATGAGTAACTTCACACTATCAG 60.148 40.741 0.00 0.00 0.00 2.90
4801 5252 7.039011 ACAATGGAGATGAGTAACTTCACACTA 60.039 37.037 0.00 0.00 0.00 2.74
4975 5430 2.478134 GCAGTTCAACAGAGTAGCACAG 59.522 50.000 0.00 0.00 0.00 3.66
5007 5462 9.643693 ACACCAAAGATGAAACAAATAATCATC 57.356 29.630 6.84 6.84 46.23 2.92
5087 5542 2.903135 GGAGAAGGGTGGATAGATCAGG 59.097 54.545 0.00 0.00 0.00 3.86
5127 5582 3.193757 TCGAGCCGCGATGTTAGT 58.806 55.556 8.23 0.00 45.59 2.24
5153 5608 1.549203 TACCGAGGTCGTAGGCTTTT 58.451 50.000 0.00 0.00 37.74 2.27
5193 5648 8.194769 AGTGCTATTAAAGAGAAAGAGAGCTAC 58.805 37.037 0.00 0.00 0.00 3.58
5376 5833 4.131649 TCGACGGAACATTATTCATGGT 57.868 40.909 0.00 0.00 37.17 3.55
5392 5849 5.632347 ACAAAATTACAGTCTAGGTTCGACG 59.368 40.000 0.00 0.00 36.53 5.12
5395 5852 8.475331 ACATACAAAATTACAGTCTAGGTTCG 57.525 34.615 0.00 0.00 0.00 3.95
5411 5868 8.090250 ACGACTAAACAAGCATACATACAAAA 57.910 30.769 0.00 0.00 0.00 2.44
5418 5875 7.101054 AGGAAATACGACTAAACAAGCATACA 58.899 34.615 0.00 0.00 0.00 2.29
5462 5979 9.956720 CCTGCCATTATAAAGTTCATTTAAGAG 57.043 33.333 0.00 0.00 36.94 2.85
5463 5980 8.413229 GCCTGCCATTATAAAGTTCATTTAAGA 58.587 33.333 0.00 0.00 36.94 2.10
5464 5981 7.653311 GGCCTGCCATTATAAAGTTCATTTAAG 59.347 37.037 2.58 0.00 35.10 1.85
5465 5982 7.496747 GGCCTGCCATTATAAAGTTCATTTAA 58.503 34.615 2.58 0.00 35.10 1.52
5467 5984 5.451798 CGGCCTGCCATTATAAAGTTCATTT 60.452 40.000 9.17 0.00 35.37 2.32
5470 5987 2.948979 CGGCCTGCCATTATAAAGTTCA 59.051 45.455 9.17 0.00 35.37 3.18
5471 5988 3.003378 GTCGGCCTGCCATTATAAAGTTC 59.997 47.826 9.17 0.00 35.37 3.01
5472 5989 2.949644 GTCGGCCTGCCATTATAAAGTT 59.050 45.455 9.17 0.00 35.37 2.66
5473 5990 2.092646 TGTCGGCCTGCCATTATAAAGT 60.093 45.455 9.17 0.00 35.37 2.66
5474 5991 2.290641 GTGTCGGCCTGCCATTATAAAG 59.709 50.000 9.17 0.00 35.37 1.85
5475 5992 2.294074 GTGTCGGCCTGCCATTATAAA 58.706 47.619 9.17 0.00 35.37 1.40
5478 5995 1.152963 GGTGTCGGCCTGCCATTAT 60.153 57.895 9.17 0.00 35.37 1.28
5488 6005 1.966451 CTGAAACCTGGGTGTCGGC 60.966 63.158 5.90 0.00 35.20 5.54
5491 6008 0.765510 AGACCTGAAACCTGGGTGTC 59.234 55.000 3.11 3.11 33.01 3.67
5511 6030 6.535865 TCCGCAACTTTATTACACGATTACAT 59.464 34.615 0.00 0.00 0.00 2.29
5535 6054 6.293081 GCCACTATGATCATACACAACATGTC 60.293 42.308 11.49 0.00 42.09 3.06
5536 6055 5.528690 GCCACTATGATCATACACAACATGT 59.471 40.000 11.49 3.06 46.06 3.21
5560 6084 7.076842 ACGATCACATCAAAAGTAAAGGATG 57.923 36.000 0.00 0.00 42.12 3.51
5584 6108 9.483916 CCATAAAATGGTACTGTATTCGTCATA 57.516 33.333 0.00 0.00 45.54 2.15
5597 6121 7.778382 AACAGATAGTTCCCCATAAAATGGTAC 59.222 37.037 5.27 1.28 42.14 3.34
5598 6122 7.777910 CAACAGATAGTTCCCCATAAAATGGTA 59.222 37.037 5.27 0.00 43.21 3.25
5599 6123 6.607198 CAACAGATAGTTCCCCATAAAATGGT 59.393 38.462 5.27 0.00 43.21 3.55
5608 6132 6.823286 TTATGATCAACAGATAGTTCCCCA 57.177 37.500 0.00 0.00 38.74 4.96
5617 6141 7.120285 CACAAGACACCTTTATGATCAACAGAT 59.880 37.037 0.00 0.00 0.00 2.90
5622 6146 5.069318 TGCACAAGACACCTTTATGATCAA 58.931 37.500 0.00 0.00 0.00 2.57
5630 6154 1.767759 AGCTTGCACAAGACACCTTT 58.232 45.000 14.44 0.00 40.79 3.11
5631 6155 1.767759 AAGCTTGCACAAGACACCTT 58.232 45.000 14.44 5.09 40.79 3.50
5647 6171 2.785713 TTGAGCCCAACGTAAAAAGC 57.214 45.000 0.00 0.00 0.00 3.51
5663 6187 3.460340 TGTAGTTGTCTTCCCCCTTTTGA 59.540 43.478 0.00 0.00 0.00 2.69
5669 6193 1.061546 TGGTGTAGTTGTCTTCCCCC 58.938 55.000 0.00 0.00 0.00 5.40
5670 6194 2.501261 GTTGGTGTAGTTGTCTTCCCC 58.499 52.381 0.00 0.00 0.00 4.81
5671 6195 2.140717 CGTTGGTGTAGTTGTCTTCCC 58.859 52.381 0.00 0.00 0.00 3.97
5673 6197 5.521372 ACTTTACGTTGGTGTAGTTGTCTTC 59.479 40.000 0.00 0.00 0.00 2.87
5691 6215 2.262211 CGGGTACGTGGCTTACTTTAC 58.738 52.381 0.00 0.00 34.81 2.01
5705 6229 2.056577 CGACTTTGTTCAGACGGGTAC 58.943 52.381 0.00 0.00 0.00 3.34
5707 6231 0.748450 TCGACTTTGTTCAGACGGGT 59.252 50.000 0.00 0.00 33.50 5.28
5708 6232 1.137513 GTCGACTTTGTTCAGACGGG 58.862 55.000 8.70 0.00 33.50 5.28
5710 6234 1.787155 CAGGTCGACTTTGTTCAGACG 59.213 52.381 16.46 0.00 33.90 4.18
5711 6235 2.135933 CCAGGTCGACTTTGTTCAGAC 58.864 52.381 16.46 0.00 0.00 3.51
5712 6236 2.036387 TCCAGGTCGACTTTGTTCAGA 58.964 47.619 16.46 4.69 0.00 3.27
5718 6255 4.829064 TTCAAATTCCAGGTCGACTTTG 57.171 40.909 16.46 15.99 35.08 2.77
5733 6270 9.177608 TGGTTCGATTTCATCTAGAATTCAAAT 57.822 29.630 8.44 3.69 36.75 2.32
5771 6318 6.816136 TCAAGATCAGACTTTGTTCAGTACA 58.184 36.000 0.00 0.00 34.12 2.90
5773 6320 5.928839 GCTCAAGATCAGACTTTGTTCAGTA 59.071 40.000 0.00 0.00 0.00 2.74
5797 6344 6.253746 CCTGCGATTTTGTCTAGAATTCTTG 58.746 40.000 14.36 12.08 0.00 3.02
5798 6345 5.163713 GCCTGCGATTTTGTCTAGAATTCTT 60.164 40.000 14.36 0.00 0.00 2.52
5799 6346 4.333926 GCCTGCGATTTTGTCTAGAATTCT 59.666 41.667 13.56 13.56 0.00 2.40
5811 6444 0.611618 TGGATGTGGCCTGCGATTTT 60.612 50.000 3.32 0.00 0.00 1.82
5851 6485 2.431782 GCCCCTTGTGCAATATCAATGT 59.568 45.455 0.00 0.00 0.00 2.71
5871 6506 1.661509 GAACTGCGCAACAAAGGGC 60.662 57.895 13.05 0.00 46.45 5.19
5890 6525 0.464452 AACCTATCTTCGCCTTCCCG 59.536 55.000 0.00 0.00 0.00 5.14
5891 6526 2.699321 AGTAACCTATCTTCGCCTTCCC 59.301 50.000 0.00 0.00 0.00 3.97
5926 6561 2.094700 GGTCAGCGCGATTATCCTCATA 60.095 50.000 12.10 0.00 0.00 2.15
5934 6569 2.202690 CCGTGGTCAGCGCGATTA 60.203 61.111 12.10 0.00 0.00 1.75
5968 6612 3.116096 TCAGCTGACCCAGTAACCTAT 57.884 47.619 13.74 0.00 33.43 2.57
5971 6615 2.038557 TCTTTCAGCTGACCCAGTAACC 59.961 50.000 18.03 0.00 33.43 2.85
5983 6627 5.764192 GCATGATTCTCCTTATCTTTCAGCT 59.236 40.000 0.00 0.00 0.00 4.24
6004 6648 0.320771 GTGGTCGTGGTTCTCAGCAT 60.321 55.000 0.00 0.00 31.62 3.79
6005 6649 1.069090 GTGGTCGTGGTTCTCAGCA 59.931 57.895 0.00 0.00 0.00 4.41
6203 6847 1.798813 CTCTTTGTAACGCTGACACCC 59.201 52.381 0.00 0.00 0.00 4.61
6215 6859 6.765989 ACTTCTGTAATTGCACACTCTTTGTA 59.234 34.615 0.00 0.00 35.67 2.41
6221 6865 6.159988 AGAGTACTTCTGTAATTGCACACTC 58.840 40.000 0.00 1.68 33.93 3.51
6227 6873 5.038033 CGGAGAGAGTACTTCTGTAATTGC 58.962 45.833 10.94 0.00 35.87 3.56
6327 6973 4.430441 ACCTCTGTGAATTCTACTCCCTT 58.570 43.478 7.05 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.