Multiple sequence alignment - TraesCS3A01G275400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G275400 chr3A 100.000 3762 0 0 1 3762 505032924 505029163 0.000000e+00 6948.0
1 TraesCS3A01G275400 chr3A 84.416 77 7 4 3395 3469 467095011 467095084 1.870000e-08 71.3
2 TraesCS3A01G275400 chr3D 94.580 1513 66 7 1362 2859 381884237 381882726 0.000000e+00 2326.0
3 TraesCS3A01G275400 chr3D 89.480 827 68 10 1 819 381885668 381884853 0.000000e+00 1027.0
4 TraesCS3A01G275400 chr3D 93.827 567 27 3 818 1382 381884813 381884253 0.000000e+00 846.0
5 TraesCS3A01G275400 chr3D 96.970 363 8 3 2923 3284 381882726 381882366 1.160000e-169 606.0
6 TraesCS3A01G275400 chr3D 82.456 114 17 3 3339 3450 583260516 583260404 3.090000e-16 97.1
7 TraesCS3A01G275400 chr3B 89.300 1813 131 28 1362 3128 497460385 497458590 0.000000e+00 2215.0
8 TraesCS3A01G275400 chr3B 88.043 828 70 14 1 819 497461808 497461001 0.000000e+00 953.0
9 TraesCS3A01G275400 chr3B 91.993 562 36 4 818 1377 497460960 497460406 0.000000e+00 780.0
10 TraesCS3A01G275400 chr3B 93.496 123 7 1 3162 3284 497458591 497458470 8.300000e-42 182.0
11 TraesCS3A01G275400 chr2A 83.401 247 32 8 2198 2438 754457815 754457572 1.760000e-53 220.0
12 TraesCS3A01G275400 chr7D 82.996 247 33 7 2198 2438 101442669 101442426 8.180000e-52 215.0
13 TraesCS3A01G275400 chr7A 85.644 202 28 1 2198 2399 259561558 259561358 1.060000e-50 211.0
14 TraesCS3A01G275400 chr4A 84.158 202 31 1 2198 2399 713269941 713270141 1.070000e-45 195.0
15 TraesCS3A01G275400 chrUn 80.851 235 37 8 2198 2426 436891169 436890937 1.070000e-40 178.0
16 TraesCS3A01G275400 chr5B 80.851 235 37 8 2198 2426 616270036 616269804 1.070000e-40 178.0
17 TraesCS3A01G275400 chr5B 80.932 236 35 10 2198 2426 616326521 616326289 1.070000e-40 178.0
18 TraesCS3A01G275400 chr5B 81.579 152 27 1 3298 3448 241162564 241162715 1.420000e-24 124.0
19 TraesCS3A01G275400 chr5B 88.636 88 9 1 3474 3560 682372738 682372825 5.140000e-19 106.0
20 TraesCS3A01G275400 chr2B 77.044 318 50 15 3467 3762 758920699 758921015 1.080000e-35 161.0
21 TraesCS3A01G275400 chr5A 78.868 265 28 9 2797 3046 426477657 426477908 1.810000e-33 154.0
22 TraesCS3A01G275400 chr1A 78.491 265 29 15 2797 3046 137871974 137871723 8.420000e-32 148.0
23 TraesCS3A01G275400 chr1A 81.622 185 18 5 2797 2978 115567525 115567696 5.070000e-29 139.0
24 TraesCS3A01G275400 chr6A 77.444 266 31 15 2797 3046 327718404 327718152 8.480000e-27 132.0
25 TraesCS3A01G275400 chr1B 77.358 265 28 19 2797 3046 644544758 644545005 1.100000e-25 128.0
26 TraesCS3A01G275400 chr1B 84.466 103 15 1 3651 3753 502823773 502823874 2.390000e-17 100.0
27 TraesCS3A01G275400 chr1B 84.848 99 14 1 3651 3749 502823627 502823724 8.600000e-17 99.0
28 TraesCS3A01G275400 chr7B 75.658 304 43 16 3468 3748 425311768 425312063 5.100000e-24 122.0
29 TraesCS3A01G275400 chr7B 75.610 164 36 4 3298 3459 473692063 473692224 1.120000e-10 78.7
30 TraesCS3A01G275400 chr6B 82.203 118 20 1 3348 3464 632784803 632784920 2.390000e-17 100.0
31 TraesCS3A01G275400 chr6D 82.075 106 18 1 3654 3758 429006420 429006525 5.180000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G275400 chr3A 505029163 505032924 3761 True 6948.00 6948 100.00000 1 3762 1 chr3A.!!$R1 3761
1 TraesCS3A01G275400 chr3D 381882366 381885668 3302 True 1201.25 2326 93.71425 1 3284 4 chr3D.!!$R2 3283
2 TraesCS3A01G275400 chr3B 497458470 497461808 3338 True 1032.50 2215 90.70800 1 3284 4 chr3B.!!$R1 3283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 272 1.000274 GTGTTAGGTTGCTTGCCCAAG 60.000 52.381 3.7 3.7 41.24 3.61 F
438 442 1.112113 CAGGTCGTGTGGTAGGCTAT 58.888 55.000 0.0 0.0 0.00 2.97 F
1387 1486 0.837272 TTATTCAGGAAGCTCCCCCG 59.163 55.000 0.0 0.0 37.19 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1381 1480 1.300927 ATGGGATAACAAACGGGGGA 58.699 50.000 0.00 0.00 0.00 4.81 R
1889 2018 2.440980 GGGTGCATCAGCTTCCCC 60.441 66.667 0.00 0.00 44.11 4.81 R
3371 3516 0.037697 TACAGTGTGGCGCCTAACTG 60.038 55.000 38.33 38.33 44.46 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.754226 TGTTTGAACTTTGAGGGGCAC 59.246 47.619 0.00 0.00 0.00 5.01
23 24 1.754226 GTTTGAACTTTGAGGGGCACA 59.246 47.619 0.00 0.00 0.00 4.57
38 39 5.826643 AGGGGCACAAAAAGATATCTTGTA 58.173 37.500 18.61 0.00 36.12 2.41
39 40 6.435164 AGGGGCACAAAAAGATATCTTGTAT 58.565 36.000 18.61 5.87 36.12 2.29
66 67 2.500392 CCCCCTTTGTCCGATAACAA 57.500 50.000 0.00 0.00 37.37 2.83
81 82 4.148871 CGATAACAATGCGACCTATGACAG 59.851 45.833 0.00 0.00 0.00 3.51
151 152 7.676683 ACACATAAAGGTCACAGTATCCTAT 57.323 36.000 0.00 0.00 0.00 2.57
162 163 9.826574 GGTCACAGTATCCTATTGTTATTTACA 57.173 33.333 0.00 0.00 34.12 2.41
164 165 9.524106 TCACAGTATCCTATTGTTATTTACACG 57.476 33.333 0.00 0.00 36.21 4.49
176 177 6.367421 TGTTATTTACACGCAAAGCAGTTAG 58.633 36.000 0.00 0.00 0.00 2.34
206 207 4.025647 GCTGAACAAGATACCGATGTAAGC 60.026 45.833 0.00 0.00 32.96 3.09
270 272 1.000274 GTGTTAGGTTGCTTGCCCAAG 60.000 52.381 3.70 3.70 41.24 3.61
290 292 6.001460 CCAAGAGGTATTAGTTGAACACCAA 58.999 40.000 5.51 0.00 0.00 3.67
297 299 8.262227 AGGTATTAGTTGAACACCAATTCGATA 58.738 33.333 5.51 0.00 37.08 2.92
307 309 7.169140 TGAACACCAATTCGATATTGATAGACG 59.831 37.037 16.78 0.00 0.00 4.18
347 349 6.945435 TGCTTGATTTACCCTTGATTTAGTCA 59.055 34.615 0.00 0.00 34.25 3.41
349 351 8.470002 GCTTGATTTACCCTTGATTTAGTCATT 58.530 33.333 0.00 0.00 36.54 2.57
361 363 6.671190 TGATTTAGTCATTGACTGTGCTTTG 58.329 36.000 26.01 0.00 43.30 2.77
368 370 5.967674 GTCATTGACTGTGCTTTGCATATAC 59.032 40.000 9.59 0.00 41.91 1.47
372 374 3.861840 ACTGTGCTTTGCATATACGAGT 58.138 40.909 0.00 0.00 41.91 4.18
382 384 5.347620 TGCATATACGAGTTTGGTACCTT 57.652 39.130 14.36 0.00 0.00 3.50
400 402 4.919793 ACCTTTAGGGAGTTAGGAAAAGC 58.080 43.478 0.10 0.00 40.27 3.51
438 442 1.112113 CAGGTCGTGTGGTAGGCTAT 58.888 55.000 0.00 0.00 0.00 2.97
441 445 2.957006 AGGTCGTGTGGTAGGCTATTAG 59.043 50.000 0.00 0.00 0.00 1.73
442 446 2.954318 GGTCGTGTGGTAGGCTATTAGA 59.046 50.000 0.00 0.00 0.00 2.10
443 447 3.573110 GGTCGTGTGGTAGGCTATTAGAT 59.427 47.826 0.00 0.00 0.00 1.98
444 448 4.763793 GGTCGTGTGGTAGGCTATTAGATA 59.236 45.833 0.00 0.00 0.00 1.98
445 449 5.242393 GGTCGTGTGGTAGGCTATTAGATAA 59.758 44.000 0.00 0.00 0.00 1.75
446 450 6.380190 GTCGTGTGGTAGGCTATTAGATAAG 58.620 44.000 0.00 0.00 0.00 1.73
473 477 5.175673 GGTGTTAGCAAATGAAAGCTCAAAC 59.824 40.000 0.00 0.00 42.05 2.93
484 488 6.751514 TGAAAGCTCAAACTGTTGTTTCTA 57.248 33.333 0.00 0.00 43.75 2.10
499 503 8.270080 TGTTGTTTCTATTGTAACTTGTGTGA 57.730 30.769 0.00 0.00 0.00 3.58
520 524 8.964150 GTGTGATTTAACAAATTGTAGGAACAC 58.036 33.333 0.00 8.51 34.61 3.32
631 635 5.584551 AGTTGGGACTTCTCCACTTATTT 57.415 39.130 0.00 0.00 38.52 1.40
675 684 6.203808 TCTTGGCAATCAATCATGAGAAAG 57.796 37.500 0.00 0.00 39.39 2.62
679 688 7.465353 TGGCAATCAATCATGAGAAAGTTTA 57.535 32.000 0.09 0.00 39.39 2.01
707 716 2.726241 GAGGCTGCAAATTCGTTTGAAC 59.274 45.455 0.50 0.00 36.81 3.18
713 722 4.992688 TGCAAATTCGTTTGAACTTCACT 58.007 34.783 5.17 0.00 36.81 3.41
720 729 7.962964 ATTCGTTTGAACTTCACTCTAATCA 57.037 32.000 0.00 0.00 36.81 2.57
768 780 7.667219 AGGGGCACTAAAACAATATGATATCTG 59.333 37.037 3.98 0.00 0.00 2.90
782 794 4.037222 TGATATCTGGCTTTAGGTGTGGA 58.963 43.478 3.98 0.00 0.00 4.02
803 815 7.566760 TGGATATGCCATGTTACTTTACAAG 57.433 36.000 0.00 0.00 43.33 3.16
809 821 5.163509 TGCCATGTTACTTTACAAGCAAACA 60.164 36.000 7.21 7.21 40.06 2.83
840 894 6.422333 TCATGTGCCTTGAAACTGGATATTA 58.578 36.000 0.00 0.00 0.00 0.98
849 903 7.659390 CCTTGAAACTGGATATTACTCTCCATC 59.341 40.741 0.00 0.00 40.66 3.51
857 911 5.866633 GGATATTACTCTCCATCGCTTTGAG 59.133 44.000 0.00 0.00 0.00 3.02
871 925 3.730963 CGCTTTGAGCTGTCGTAGTGATA 60.731 47.826 0.00 0.00 39.60 2.15
872 926 4.174009 GCTTTGAGCTGTCGTAGTGATAA 58.826 43.478 0.00 0.00 38.45 1.75
873 927 4.625742 GCTTTGAGCTGTCGTAGTGATAAA 59.374 41.667 0.00 0.00 38.45 1.40
874 928 5.444745 GCTTTGAGCTGTCGTAGTGATAAAC 60.445 44.000 0.00 0.00 38.45 2.01
875 929 4.106029 TGAGCTGTCGTAGTGATAAACC 57.894 45.455 0.00 0.00 0.00 3.27
876 930 3.508402 TGAGCTGTCGTAGTGATAAACCA 59.492 43.478 0.00 0.00 0.00 3.67
925 979 4.918810 AATGGTTTCCTCACACTTGTTC 57.081 40.909 0.00 0.00 0.00 3.18
949 1003 8.405418 TCTACTTGAACCGCTGTATATCTTAT 57.595 34.615 0.00 0.00 0.00 1.73
1028 1082 1.363443 CTTTTGCACACCGTGGCAT 59.637 52.632 13.33 0.00 40.17 4.40
1129 1183 3.343617 GCAAATAGTAACAGCCTCCACA 58.656 45.455 0.00 0.00 0.00 4.17
1159 1213 5.841957 ATATGCATCCAAGGTTCAACTTC 57.158 39.130 0.19 0.00 0.00 3.01
1208 1264 1.958579 TGCATTGTGAAGCTTGCTCTT 59.041 42.857 2.10 0.00 36.10 2.85
1236 1292 2.752903 ACGAACTTCACTTTGCCACTTT 59.247 40.909 0.00 0.00 0.00 2.66
1248 1304 2.639065 TGCCACTTTTTCACTCGTTCT 58.361 42.857 0.00 0.00 0.00 3.01
1351 1414 7.763528 GTCAATTCTCTGCTATTTTCTCTCTCA 59.236 37.037 0.00 0.00 0.00 3.27
1387 1486 0.837272 TTATTCAGGAAGCTCCCCCG 59.163 55.000 0.00 0.00 37.19 5.73
1409 1508 3.448093 TTGTTATCCCATTGCCAGTCA 57.552 42.857 0.00 0.00 0.00 3.41
1478 1580 4.035091 GGAAACAAACATTTTTGACAGGGC 59.965 41.667 11.21 0.00 44.38 5.19
1529 1631 1.939255 GACTTGCAGGATGAAGCTAGC 59.061 52.381 6.62 6.62 39.69 3.42
1810 1926 2.905075 TGTCCACTTCCTTATGATGCG 58.095 47.619 0.00 0.00 0.00 4.73
1870 1998 1.538512 CCACAAGAACCAGCATGACTG 59.461 52.381 0.00 3.35 46.77 3.51
1889 2018 5.688621 TGACTGTAGTTTAGTTAAGCACGTG 59.311 40.000 12.28 12.28 0.00 4.49
2029 2164 6.820335 TGTCTTTGTACTGAGATCCCATATG 58.180 40.000 0.00 0.00 0.00 1.78
2034 2169 1.701847 ACTGAGATCCCATATGGCCAC 59.298 52.381 16.97 8.93 0.00 5.01
2062 2197 7.439204 GCTATATTATTAGCGGAGAAACTCG 57.561 40.000 0.00 0.00 35.64 4.18
2151 2290 5.121142 GTGCAGCTATCAACATTTTGCAAAT 59.879 36.000 13.65 0.00 41.15 2.32
2182 2321 4.168922 TCTGAGTTCATTTTGCATGCTG 57.831 40.909 20.33 8.87 0.00 4.41
2195 2334 4.979204 TGCTGCAAGAAAGCATGC 57.021 50.000 10.51 10.51 45.50 4.06
2348 2487 2.037527 GGGTCCGTCTCTCACCCT 59.962 66.667 0.00 0.00 45.81 4.34
2350 2489 0.324091 GGGTCCGTCTCTCACCCTAA 60.324 60.000 0.00 0.00 45.81 2.69
2351 2490 1.553706 GGTCCGTCTCTCACCCTAAA 58.446 55.000 0.00 0.00 0.00 1.85
2368 2507 4.024048 CCCTAAACCATGTCGATGCATTAC 60.024 45.833 0.00 3.24 0.00 1.89
2374 2513 4.943705 ACCATGTCGATGCATTACTTCTTT 59.056 37.500 0.00 0.00 0.00 2.52
2438 2579 4.039124 GGAAAAGAAAAGAACTCCATGCCA 59.961 41.667 0.00 0.00 0.00 4.92
2532 2673 5.671140 CGTTACTTACGCATGTGCTTTATTC 59.329 40.000 6.08 0.00 44.26 1.75
2655 2796 2.029380 CCGTGTCTGTCTTGGTGTCATA 60.029 50.000 0.00 0.00 0.00 2.15
2685 2827 9.321562 GTTGATCATTTCCATCAATTTGCTTAT 57.678 29.630 0.00 0.00 41.26 1.73
2768 2910 5.661312 ACTAGACCTGCCATGTAAATACTGA 59.339 40.000 0.00 0.00 0.00 3.41
2789 2931 4.005032 GCTTTTGGCGTTCGCAAA 57.995 50.000 18.46 11.12 0.00 3.68
2861 3005 3.746751 GCATCATATCTTGCTGGTCCTGT 60.747 47.826 0.00 0.00 35.95 4.00
2979 3123 2.566708 AAGGAGAGATGAGAGGCCTT 57.433 50.000 6.77 0.00 0.00 4.35
2980 3124 2.086610 AGGAGAGATGAGAGGCCTTC 57.913 55.000 6.77 7.38 0.00 3.46
3181 3326 1.109323 GCCTGAGCACCCAACAAACT 61.109 55.000 0.00 0.00 39.53 2.66
3195 3340 0.039798 CAAACTGCACAGCGCTTGAT 60.040 50.000 7.50 0.00 43.06 2.57
3274 3419 3.459378 CTGGCGGTGAATGATGCGC 62.459 63.158 0.00 0.00 0.00 6.09
3279 3424 1.501169 CGGTGAATGATGCGCATAGA 58.499 50.000 25.40 13.74 35.78 1.98
3281 3426 1.802960 GGTGAATGATGCGCATAGAGG 59.197 52.381 25.40 0.00 35.78 3.69
3283 3428 0.801251 GAATGATGCGCATAGAGGCC 59.199 55.000 25.40 10.39 35.78 5.19
3284 3429 0.109153 AATGATGCGCATAGAGGCCA 59.891 50.000 25.40 16.28 35.78 5.36
3285 3430 0.109153 ATGATGCGCATAGAGGCCAA 59.891 50.000 25.40 2.01 34.82 4.52
3286 3431 0.107263 TGATGCGCATAGAGGCCAAA 60.107 50.000 25.40 0.00 0.00 3.28
3287 3432 1.024271 GATGCGCATAGAGGCCAAAA 58.976 50.000 25.40 0.00 0.00 2.44
3288 3433 1.610522 GATGCGCATAGAGGCCAAAAT 59.389 47.619 25.40 0.00 0.00 1.82
3289 3434 1.024271 TGCGCATAGAGGCCAAAATC 58.976 50.000 5.66 0.00 0.00 2.17
3290 3435 1.024271 GCGCATAGAGGCCAAAATCA 58.976 50.000 5.01 0.00 0.00 2.57
3291 3436 1.268743 GCGCATAGAGGCCAAAATCAC 60.269 52.381 5.01 0.00 0.00 3.06
3292 3437 2.292267 CGCATAGAGGCCAAAATCACT 58.708 47.619 5.01 0.00 0.00 3.41
3293 3438 3.466836 CGCATAGAGGCCAAAATCACTA 58.533 45.455 5.01 0.00 0.00 2.74
3294 3439 4.067896 CGCATAGAGGCCAAAATCACTAT 58.932 43.478 5.01 0.00 0.00 2.12
3295 3440 4.516698 CGCATAGAGGCCAAAATCACTATT 59.483 41.667 5.01 0.00 0.00 1.73
3296 3441 5.334414 CGCATAGAGGCCAAAATCACTATTC 60.334 44.000 5.01 0.00 0.00 1.75
3297 3442 5.767168 GCATAGAGGCCAAAATCACTATTCT 59.233 40.000 5.01 0.00 0.00 2.40
3298 3443 6.293845 GCATAGAGGCCAAAATCACTATTCTG 60.294 42.308 5.01 0.00 0.00 3.02
3299 3444 4.530875 AGAGGCCAAAATCACTATTCTGG 58.469 43.478 5.01 0.00 0.00 3.86
3300 3445 4.228210 AGAGGCCAAAATCACTATTCTGGA 59.772 41.667 5.01 0.00 0.00 3.86
3301 3446 5.103771 AGAGGCCAAAATCACTATTCTGGAT 60.104 40.000 5.01 0.00 0.00 3.41
3302 3447 4.891756 AGGCCAAAATCACTATTCTGGATG 59.108 41.667 5.01 0.00 0.00 3.51
3303 3448 4.889409 GGCCAAAATCACTATTCTGGATGA 59.111 41.667 0.00 0.00 0.00 2.92
3304 3449 5.360714 GGCCAAAATCACTATTCTGGATGAA 59.639 40.000 0.00 0.00 39.24 2.57
3305 3450 6.127366 GGCCAAAATCACTATTCTGGATGAAA 60.127 38.462 0.00 0.00 38.29 2.69
3306 3451 6.753744 GCCAAAATCACTATTCTGGATGAAAC 59.246 38.462 0.00 0.00 38.29 2.78
3307 3452 7.577426 GCCAAAATCACTATTCTGGATGAAACA 60.577 37.037 0.00 0.00 38.29 2.83
3308 3453 8.306038 CCAAAATCACTATTCTGGATGAAACAA 58.694 33.333 0.00 0.00 38.29 2.83
3309 3454 9.865321 CAAAATCACTATTCTGGATGAAACAAT 57.135 29.630 0.00 0.00 38.29 2.71
3314 3459 9.330063 TCACTATTCTGGATGAAACAATATCAC 57.670 33.333 0.00 0.00 38.29 3.06
3315 3460 9.112725 CACTATTCTGGATGAAACAATATCACA 57.887 33.333 0.00 0.00 38.29 3.58
3316 3461 9.685276 ACTATTCTGGATGAAACAATATCACAA 57.315 29.630 0.00 0.00 38.29 3.33
3320 3465 9.642327 TTCTGGATGAAACAATATCACAAAATG 57.358 29.630 0.00 0.00 0.00 2.32
3321 3466 9.022884 TCTGGATGAAACAATATCACAAAATGA 57.977 29.630 0.00 0.00 43.13 2.57
3322 3467 9.642327 CTGGATGAAACAATATCACAAAATGAA 57.358 29.630 0.00 0.00 41.93 2.57
3323 3468 9.421806 TGGATGAAACAATATCACAAAATGAAC 57.578 29.630 0.00 0.00 41.93 3.18
3324 3469 9.643693 GGATGAAACAATATCACAAAATGAACT 57.356 29.630 0.00 0.00 41.93 3.01
3326 3471 9.985730 ATGAAACAATATCACAAAATGAACTGT 57.014 25.926 0.00 0.00 41.93 3.55
3327 3472 9.814899 TGAAACAATATCACAAAATGAACTGTT 57.185 25.926 0.00 0.00 41.93 3.16
3329 3474 9.814899 AAACAATATCACAAAATGAACTGTTGA 57.185 25.926 0.00 0.00 41.93 3.18
3330 3475 9.985730 AACAATATCACAAAATGAACTGTTGAT 57.014 25.926 0.00 0.00 41.93 2.57
3331 3476 9.414295 ACAATATCACAAAATGAACTGTTGATG 57.586 29.630 0.00 0.00 41.93 3.07
3332 3477 9.414295 CAATATCACAAAATGAACTGTTGATGT 57.586 29.630 0.00 0.00 41.93 3.06
3336 3481 9.985730 ATCACAAAATGAACTGTTGATGTAATT 57.014 25.926 0.00 0.00 41.93 1.40
3337 3482 9.814899 TCACAAAATGAACTGTTGATGTAATTT 57.185 25.926 0.00 0.00 33.02 1.82
3356 3501 2.943036 TTTTTACCCGGCTGACTCTT 57.057 45.000 0.00 0.00 0.00 2.85
3357 3502 2.943036 TTTTACCCGGCTGACTCTTT 57.057 45.000 0.00 0.00 0.00 2.52
3358 3503 2.943036 TTTACCCGGCTGACTCTTTT 57.057 45.000 0.00 0.00 0.00 2.27
3359 3504 2.178912 TTACCCGGCTGACTCTTTTG 57.821 50.000 0.00 0.00 0.00 2.44
3360 3505 1.053424 TACCCGGCTGACTCTTTTGT 58.947 50.000 0.00 0.00 0.00 2.83
3361 3506 0.535102 ACCCGGCTGACTCTTTTGTG 60.535 55.000 0.00 0.00 0.00 3.33
3362 3507 0.535102 CCCGGCTGACTCTTTTGTGT 60.535 55.000 0.00 0.00 0.00 3.72
3363 3508 1.270625 CCCGGCTGACTCTTTTGTGTA 60.271 52.381 0.00 0.00 0.00 2.90
3364 3509 2.069273 CCGGCTGACTCTTTTGTGTAG 58.931 52.381 0.00 0.00 0.00 2.74
3365 3510 2.548067 CCGGCTGACTCTTTTGTGTAGT 60.548 50.000 0.00 0.00 0.00 2.73
3366 3511 2.476619 CGGCTGACTCTTTTGTGTAGTG 59.523 50.000 0.00 0.00 0.00 2.74
3367 3512 2.224314 GGCTGACTCTTTTGTGTAGTGC 59.776 50.000 0.00 0.00 0.00 4.40
3368 3513 2.224314 GCTGACTCTTTTGTGTAGTGCC 59.776 50.000 0.00 0.00 0.00 5.01
3369 3514 2.808543 CTGACTCTTTTGTGTAGTGCCC 59.191 50.000 0.00 0.00 0.00 5.36
3370 3515 2.171659 TGACTCTTTTGTGTAGTGCCCA 59.828 45.455 0.00 0.00 0.00 5.36
3371 3516 2.548480 GACTCTTTTGTGTAGTGCCCAC 59.452 50.000 0.00 0.00 0.00 4.61
3372 3517 2.092646 ACTCTTTTGTGTAGTGCCCACA 60.093 45.455 0.82 0.00 40.87 4.17
3373 3518 2.549754 CTCTTTTGTGTAGTGCCCACAG 59.450 50.000 0.82 0.00 43.19 3.66
3374 3519 2.092646 TCTTTTGTGTAGTGCCCACAGT 60.093 45.455 0.82 0.00 43.19 3.55
3375 3520 2.428544 TTTGTGTAGTGCCCACAGTT 57.571 45.000 0.82 0.00 43.19 3.16
3376 3521 3.562343 TTTGTGTAGTGCCCACAGTTA 57.438 42.857 0.82 0.00 43.19 2.24
3377 3522 2.831685 TGTGTAGTGCCCACAGTTAG 57.168 50.000 0.82 0.00 37.88 2.34
3378 3523 1.346395 TGTGTAGTGCCCACAGTTAGG 59.654 52.381 0.82 0.00 37.88 2.69
3383 3528 4.715523 GCCCACAGTTAGGCGCCA 62.716 66.667 31.54 12.31 39.87 5.69
3384 3529 2.746277 CCCACAGTTAGGCGCCAC 60.746 66.667 31.54 19.69 0.00 5.01
3385 3530 2.031919 CCACAGTTAGGCGCCACA 59.968 61.111 31.54 13.75 0.00 4.17
3386 3531 2.325082 CCACAGTTAGGCGCCACAC 61.325 63.158 31.54 23.92 0.00 3.82
3387 3532 1.301716 CACAGTTAGGCGCCACACT 60.302 57.895 31.54 25.86 0.00 3.55
3388 3533 1.301716 ACAGTTAGGCGCCACACTG 60.302 57.895 37.61 37.61 42.08 3.66
3389 3534 1.301716 CAGTTAGGCGCCACACTGT 60.302 57.895 34.07 17.19 33.35 3.55
3390 3535 0.037697 CAGTTAGGCGCCACACTGTA 60.038 55.000 34.07 16.24 33.35 2.74
3391 3536 0.682852 AGTTAGGCGCCACACTGTAA 59.317 50.000 31.54 14.53 0.00 2.41
3392 3537 1.278127 AGTTAGGCGCCACACTGTAAT 59.722 47.619 31.54 6.76 0.00 1.89
3393 3538 1.396996 GTTAGGCGCCACACTGTAATG 59.603 52.381 31.54 0.00 0.00 1.90
3394 3539 0.611200 TAGGCGCCACACTGTAATGT 59.389 50.000 31.54 5.27 0.00 2.71
3404 3549 1.527034 ACTGTAATGTGCAGTGCCTG 58.473 50.000 13.72 2.48 44.52 4.85
3405 3550 1.072173 ACTGTAATGTGCAGTGCCTGA 59.928 47.619 13.72 0.00 44.52 3.86
3406 3551 1.466167 CTGTAATGTGCAGTGCCTGAC 59.534 52.381 13.72 4.76 32.44 3.51
3407 3552 1.072173 TGTAATGTGCAGTGCCTGACT 59.928 47.619 13.72 0.00 32.44 3.41
3414 3559 4.787871 AGTGCCTGACTGACAAGC 57.212 55.556 0.00 0.00 36.58 4.01
3415 3560 1.301244 AGTGCCTGACTGACAAGCG 60.301 57.895 0.00 0.00 38.64 4.68
3416 3561 2.666190 TGCCTGACTGACAAGCGC 60.666 61.111 0.00 0.00 38.64 5.92
3417 3562 2.358003 GCCTGACTGACAAGCGCT 60.358 61.111 2.64 2.64 0.00 5.92
3418 3563 1.079819 GCCTGACTGACAAGCGCTA 60.080 57.895 12.05 0.00 0.00 4.26
3419 3564 1.355066 GCCTGACTGACAAGCGCTAC 61.355 60.000 12.05 6.26 0.00 3.58
3420 3565 0.038251 CCTGACTGACAAGCGCTACA 60.038 55.000 12.05 11.04 0.00 2.74
3421 3566 1.063806 CTGACTGACAAGCGCTACAC 58.936 55.000 12.05 5.44 0.00 2.90
3431 3576 2.278857 CGCTACACGCCTAGCCAG 60.279 66.667 6.41 0.00 36.53 4.85
3432 3577 2.586357 GCTACACGCCTAGCCAGC 60.586 66.667 1.26 0.00 34.16 4.85
3439 3584 4.899239 GCCTAGCCAGCGTCGCAT 62.899 66.667 21.09 4.76 0.00 4.73
3440 3585 2.659897 CCTAGCCAGCGTCGCATC 60.660 66.667 21.09 7.62 0.00 3.91
3441 3586 2.659897 CTAGCCAGCGTCGCATCC 60.660 66.667 21.09 6.45 0.00 3.51
3442 3587 3.144120 CTAGCCAGCGTCGCATCCT 62.144 63.158 21.09 13.60 0.00 3.24
3443 3588 3.430565 TAGCCAGCGTCGCATCCTG 62.431 63.158 21.09 8.64 0.00 3.86
3446 3591 2.887568 CAGCGTCGCATCCTGGAC 60.888 66.667 21.09 0.00 0.00 4.02
3447 3592 3.071206 AGCGTCGCATCCTGGACT 61.071 61.111 21.09 0.00 0.00 3.85
3448 3593 2.887568 GCGTCGCATCCTGGACTG 60.888 66.667 13.44 0.00 0.00 3.51
3449 3594 2.887568 CGTCGCATCCTGGACTGC 60.888 66.667 16.35 16.35 35.02 4.40
3450 3595 2.265739 GTCGCATCCTGGACTGCA 59.734 61.111 22.23 12.10 38.30 4.41
3451 3596 1.153289 GTCGCATCCTGGACTGCAT 60.153 57.895 22.23 0.00 38.30 3.96
3452 3597 1.153309 TCGCATCCTGGACTGCATG 60.153 57.895 22.23 9.91 38.30 4.06
3453 3598 1.153309 CGCATCCTGGACTGCATGA 60.153 57.895 22.23 0.00 38.30 3.07
3454 3599 0.745486 CGCATCCTGGACTGCATGAA 60.745 55.000 22.23 0.00 38.30 2.57
3455 3600 1.466856 GCATCCTGGACTGCATGAAA 58.533 50.000 19.52 0.00 38.28 2.69
3456 3601 1.820519 GCATCCTGGACTGCATGAAAA 59.179 47.619 19.52 0.00 38.28 2.29
3457 3602 2.429610 GCATCCTGGACTGCATGAAAAT 59.570 45.455 19.52 0.00 38.28 1.82
3458 3603 3.118884 GCATCCTGGACTGCATGAAAATT 60.119 43.478 19.52 0.00 38.28 1.82
3459 3604 4.430007 CATCCTGGACTGCATGAAAATTG 58.570 43.478 0.00 0.00 0.00 2.32
3460 3605 2.231964 TCCTGGACTGCATGAAAATTGC 59.768 45.455 0.00 0.00 40.55 3.56
3461 3606 2.232941 CCTGGACTGCATGAAAATTGCT 59.767 45.455 0.00 0.00 40.77 3.91
3462 3607 3.444742 CCTGGACTGCATGAAAATTGCTA 59.555 43.478 0.00 0.00 40.77 3.49
3463 3608 4.082081 CCTGGACTGCATGAAAATTGCTAA 60.082 41.667 0.00 0.00 40.77 3.09
3464 3609 5.465532 TGGACTGCATGAAAATTGCTAAA 57.534 34.783 0.00 0.00 40.77 1.85
3465 3610 6.040209 TGGACTGCATGAAAATTGCTAAAT 57.960 33.333 0.00 0.00 40.77 1.40
3466 3611 6.101332 TGGACTGCATGAAAATTGCTAAATC 58.899 36.000 0.00 0.00 40.77 2.17
3467 3612 6.101332 GGACTGCATGAAAATTGCTAAATCA 58.899 36.000 0.00 0.00 40.77 2.57
3468 3613 6.255020 GGACTGCATGAAAATTGCTAAATCAG 59.745 38.462 0.00 0.00 40.77 2.90
3482 3627 6.262323 GCTAAATCAGCGTCTAGTGTTTAG 57.738 41.667 0.00 0.00 41.37 1.85
3483 3628 5.232414 GCTAAATCAGCGTCTAGTGTTTAGG 59.768 44.000 0.00 0.00 41.37 2.69
3484 3629 4.803098 AATCAGCGTCTAGTGTTTAGGT 57.197 40.909 0.00 0.00 0.00 3.08
3485 3630 3.570926 TCAGCGTCTAGTGTTTAGGTG 57.429 47.619 0.00 0.00 0.00 4.00
3486 3631 2.889045 TCAGCGTCTAGTGTTTAGGTGT 59.111 45.455 0.00 0.00 0.00 4.16
3487 3632 3.319972 TCAGCGTCTAGTGTTTAGGTGTT 59.680 43.478 0.00 0.00 0.00 3.32
3488 3633 3.428870 CAGCGTCTAGTGTTTAGGTGTTG 59.571 47.826 0.00 0.00 0.00 3.33
3489 3634 2.157085 GCGTCTAGTGTTTAGGTGTTGC 59.843 50.000 0.00 0.00 0.00 4.17
3490 3635 3.386486 CGTCTAGTGTTTAGGTGTTGCA 58.614 45.455 0.00 0.00 0.00 4.08
3491 3636 3.994392 CGTCTAGTGTTTAGGTGTTGCAT 59.006 43.478 0.00 0.00 0.00 3.96
3492 3637 4.451096 CGTCTAGTGTTTAGGTGTTGCATT 59.549 41.667 0.00 0.00 0.00 3.56
3493 3638 5.636121 CGTCTAGTGTTTAGGTGTTGCATTA 59.364 40.000 0.00 0.00 0.00 1.90
3494 3639 6.183360 CGTCTAGTGTTTAGGTGTTGCATTAG 60.183 42.308 0.00 0.00 0.00 1.73
3495 3640 6.649557 GTCTAGTGTTTAGGTGTTGCATTAGT 59.350 38.462 0.00 0.00 0.00 2.24
3496 3641 5.689383 AGTGTTTAGGTGTTGCATTAGTG 57.311 39.130 0.00 0.00 0.00 2.74
3497 3642 4.518970 AGTGTTTAGGTGTTGCATTAGTGG 59.481 41.667 0.00 0.00 0.00 4.00
3498 3643 3.254657 TGTTTAGGTGTTGCATTAGTGGC 59.745 43.478 0.00 0.00 0.00 5.01
3499 3644 3.433306 TTAGGTGTTGCATTAGTGGCT 57.567 42.857 0.00 0.00 0.00 4.75
3500 3645 1.538047 AGGTGTTGCATTAGTGGCTG 58.462 50.000 0.00 0.00 0.00 4.85
3501 3646 0.109132 GGTGTTGCATTAGTGGCTGC 60.109 55.000 0.00 0.00 38.87 5.25
3502 3647 0.597568 GTGTTGCATTAGTGGCTGCA 59.402 50.000 0.50 0.00 46.08 4.41
3506 3651 2.715749 TGCATTAGTGGCTGCACTAT 57.284 45.000 0.50 0.00 43.11 2.12
3507 3652 3.003394 TGCATTAGTGGCTGCACTATT 57.997 42.857 0.50 2.06 43.11 1.73
3508 3653 3.355378 TGCATTAGTGGCTGCACTATTT 58.645 40.909 0.50 0.00 43.11 1.40
3509 3654 3.129113 TGCATTAGTGGCTGCACTATTTG 59.871 43.478 0.50 9.26 43.11 2.32
3522 3667 4.913376 GCACTATTTGCCACTACATCTTG 58.087 43.478 0.00 0.00 46.63 3.02
3523 3668 4.635765 GCACTATTTGCCACTACATCTTGA 59.364 41.667 0.00 0.00 46.63 3.02
3524 3669 5.123820 GCACTATTTGCCACTACATCTTGAA 59.876 40.000 0.00 0.00 46.63 2.69
3525 3670 6.676456 GCACTATTTGCCACTACATCTTGAAG 60.676 42.308 0.00 0.00 46.63 3.02
3526 3671 4.708726 ATTTGCCACTACATCTTGAAGC 57.291 40.909 0.00 0.00 0.00 3.86
3527 3672 1.725641 TGCCACTACATCTTGAAGCG 58.274 50.000 0.00 0.00 0.00 4.68
3528 3673 1.009829 GCCACTACATCTTGAAGCGG 58.990 55.000 0.00 0.00 0.00 5.52
3529 3674 1.009829 CCACTACATCTTGAAGCGGC 58.990 55.000 0.00 0.00 0.00 6.53
3530 3675 1.009829 CACTACATCTTGAAGCGGCC 58.990 55.000 0.00 0.00 0.00 6.13
3531 3676 0.613260 ACTACATCTTGAAGCGGCCA 59.387 50.000 2.24 0.00 0.00 5.36
3532 3677 1.009829 CTACATCTTGAAGCGGCCAC 58.990 55.000 2.24 0.00 0.00 5.01
3533 3678 0.613260 TACATCTTGAAGCGGCCACT 59.387 50.000 2.24 0.00 0.00 4.00
3534 3679 0.613260 ACATCTTGAAGCGGCCACTA 59.387 50.000 2.24 0.00 0.00 2.74
3535 3680 1.293924 CATCTTGAAGCGGCCACTAG 58.706 55.000 2.24 0.00 0.00 2.57
3536 3681 0.905357 ATCTTGAAGCGGCCACTAGT 59.095 50.000 2.24 0.00 0.00 2.57
3537 3682 0.037326 TCTTGAAGCGGCCACTAGTG 60.037 55.000 16.34 16.34 0.00 2.74
3538 3683 1.639298 CTTGAAGCGGCCACTAGTGC 61.639 60.000 17.86 12.43 0.00 4.40
3539 3684 2.047274 GAAGCGGCCACTAGTGCA 60.047 61.111 17.86 0.00 0.00 4.57
3540 3685 2.046892 AAGCGGCCACTAGTGCAG 60.047 61.111 17.86 13.84 0.00 4.41
3543 3688 4.742201 CGGCCACTAGTGCAGCGT 62.742 66.667 17.86 0.00 0.00 5.07
3544 3689 2.815647 GGCCACTAGTGCAGCGTC 60.816 66.667 17.86 1.31 0.00 5.19
3545 3690 2.262915 GCCACTAGTGCAGCGTCT 59.737 61.111 17.86 0.00 0.00 4.18
3546 3691 1.511305 GCCACTAGTGCAGCGTCTA 59.489 57.895 17.86 0.00 0.00 2.59
3547 3692 0.108804 GCCACTAGTGCAGCGTCTAA 60.109 55.000 17.86 0.00 0.00 2.10
3548 3693 1.630148 CCACTAGTGCAGCGTCTAAC 58.370 55.000 17.86 0.00 0.00 2.34
3549 3694 1.260206 CACTAGTGCAGCGTCTAACG 58.740 55.000 10.54 0.00 45.88 3.18
3560 3705 2.102474 CGTCTAACGCTAGGCACTAC 57.898 55.000 0.00 0.00 35.30 2.73
3561 3706 1.399440 CGTCTAACGCTAGGCACTACA 59.601 52.381 0.00 0.00 35.30 2.74
3562 3707 2.033049 CGTCTAACGCTAGGCACTACAT 59.967 50.000 0.00 0.00 35.30 2.29
3563 3708 3.488721 CGTCTAACGCTAGGCACTACATT 60.489 47.826 0.00 0.00 35.30 2.71
3564 3709 3.797256 GTCTAACGCTAGGCACTACATTG 59.203 47.826 0.00 0.00 41.75 2.82
3565 3710 2.762535 AACGCTAGGCACTACATTGT 57.237 45.000 0.00 0.00 41.75 2.71
3566 3711 2.762535 ACGCTAGGCACTACATTGTT 57.237 45.000 0.00 0.00 41.75 2.83
3567 3712 3.053831 ACGCTAGGCACTACATTGTTT 57.946 42.857 0.00 0.00 41.75 2.83
3568 3713 3.000727 ACGCTAGGCACTACATTGTTTC 58.999 45.455 0.00 0.00 41.75 2.78
3569 3714 2.029244 CGCTAGGCACTACATTGTTTCG 59.971 50.000 0.00 0.00 41.75 3.46
3570 3715 3.000727 GCTAGGCACTACATTGTTTCGT 58.999 45.455 0.00 0.00 41.75 3.85
3571 3716 3.181520 GCTAGGCACTACATTGTTTCGTG 60.182 47.826 0.00 2.24 41.75 4.35
3572 3717 2.846193 AGGCACTACATTGTTTCGTGT 58.154 42.857 0.00 0.00 36.02 4.49
3573 3718 3.997762 AGGCACTACATTGTTTCGTGTA 58.002 40.909 0.00 0.00 36.02 2.90
3575 3720 3.991773 GGCACTACATTGTTTCGTGTAGA 59.008 43.478 16.73 0.00 46.75 2.59
3576 3721 4.091509 GGCACTACATTGTTTCGTGTAGAG 59.908 45.833 16.73 11.16 46.75 2.43
3577 3722 5.191595 CACTACATTGTTTCGTGTAGAGC 57.808 43.478 16.73 0.00 46.75 4.09
3578 3723 4.091509 CACTACATTGTTTCGTGTAGAGCC 59.908 45.833 16.73 0.00 46.75 4.70
3579 3724 3.402628 ACATTGTTTCGTGTAGAGCCT 57.597 42.857 0.00 0.00 0.00 4.58
3580 3725 4.530710 ACATTGTTTCGTGTAGAGCCTA 57.469 40.909 0.00 0.00 0.00 3.93
3581 3726 4.495422 ACATTGTTTCGTGTAGAGCCTAG 58.505 43.478 0.00 0.00 0.00 3.02
3582 3727 2.649331 TGTTTCGTGTAGAGCCTAGC 57.351 50.000 0.00 0.00 0.00 3.42
3583 3728 2.168496 TGTTTCGTGTAGAGCCTAGCT 58.832 47.619 0.00 0.00 43.88 3.32
3592 3737 2.360980 AGCCTAGCTCTCGGGTGT 59.639 61.111 0.00 0.00 30.62 4.16
3593 3738 1.305381 AGCCTAGCTCTCGGGTGTT 60.305 57.895 0.00 0.00 30.62 3.32
3594 3739 0.033405 AGCCTAGCTCTCGGGTGTTA 60.033 55.000 0.00 0.00 30.62 2.41
3595 3740 1.041437 GCCTAGCTCTCGGGTGTTAT 58.959 55.000 0.00 0.00 0.00 1.89
3596 3741 1.269831 GCCTAGCTCTCGGGTGTTATG 60.270 57.143 0.00 0.00 0.00 1.90
3597 3742 1.269831 CCTAGCTCTCGGGTGTTATGC 60.270 57.143 0.00 0.00 0.00 3.14
3598 3743 1.409064 CTAGCTCTCGGGTGTTATGCA 59.591 52.381 0.00 0.00 0.00 3.96
3599 3744 0.108138 AGCTCTCGGGTGTTATGCAC 60.108 55.000 0.00 0.00 46.97 4.57
3600 3745 0.108138 GCTCTCGGGTGTTATGCACT 60.108 55.000 0.00 0.00 46.86 4.40
3601 3746 1.645034 CTCTCGGGTGTTATGCACTG 58.355 55.000 0.00 0.00 46.86 3.66
3602 3747 1.204704 CTCTCGGGTGTTATGCACTGA 59.795 52.381 0.00 0.00 46.86 3.41
3603 3748 1.067142 TCTCGGGTGTTATGCACTGAC 60.067 52.381 0.00 0.00 46.86 3.51
3604 3749 0.973632 TCGGGTGTTATGCACTGACT 59.026 50.000 0.00 0.00 46.86 3.41
3605 3750 1.346395 TCGGGTGTTATGCACTGACTT 59.654 47.619 0.00 0.00 46.86 3.01
3606 3751 2.563620 TCGGGTGTTATGCACTGACTTA 59.436 45.455 0.00 0.00 46.86 2.24
3607 3752 2.930040 CGGGTGTTATGCACTGACTTAG 59.070 50.000 0.00 0.00 46.86 2.18
3608 3753 2.678336 GGGTGTTATGCACTGACTTAGC 59.322 50.000 0.00 0.00 46.86 3.09
3609 3754 3.334691 GGTGTTATGCACTGACTTAGCA 58.665 45.455 0.00 0.00 46.86 3.49
3611 3756 4.396166 GGTGTTATGCACTGACTTAGCATT 59.604 41.667 4.36 0.00 45.98 3.56
3612 3757 5.106157 GGTGTTATGCACTGACTTAGCATTT 60.106 40.000 4.36 0.00 45.98 2.32
3613 3758 6.381801 GTGTTATGCACTGACTTAGCATTTT 58.618 36.000 4.36 0.00 45.98 1.82
3614 3759 6.863126 GTGTTATGCACTGACTTAGCATTTTT 59.137 34.615 4.36 0.00 45.98 1.94
3615 3760 7.061094 GTGTTATGCACTGACTTAGCATTTTTC 59.939 37.037 4.36 0.00 45.98 2.29
3616 3761 5.710513 ATGCACTGACTTAGCATTTTTCA 57.289 34.783 0.00 0.00 45.98 2.69
3617 3762 5.112220 TGCACTGACTTAGCATTTTTCAG 57.888 39.130 0.00 0.00 39.72 3.02
3618 3763 4.821260 TGCACTGACTTAGCATTTTTCAGA 59.179 37.500 3.99 0.00 37.67 3.27
3619 3764 5.149977 GCACTGACTTAGCATTTTTCAGAC 58.850 41.667 3.99 0.00 37.67 3.51
3620 3765 5.277974 GCACTGACTTAGCATTTTTCAGACA 60.278 40.000 3.99 0.00 37.67 3.41
3621 3766 6.728200 CACTGACTTAGCATTTTTCAGACAA 58.272 36.000 3.99 0.00 37.67 3.18
3622 3767 6.634436 CACTGACTTAGCATTTTTCAGACAAC 59.366 38.462 3.99 0.00 37.67 3.32
3623 3768 6.072112 TGACTTAGCATTTTTCAGACAACC 57.928 37.500 0.00 0.00 0.00 3.77
3624 3769 5.827797 TGACTTAGCATTTTTCAGACAACCT 59.172 36.000 0.00 0.00 0.00 3.50
3625 3770 6.076981 ACTTAGCATTTTTCAGACAACCTG 57.923 37.500 0.00 0.00 44.27 4.00
3626 3771 3.375782 AGCATTTTTCAGACAACCTGC 57.624 42.857 0.00 0.00 42.62 4.85
3627 3772 2.053627 GCATTTTTCAGACAACCTGCG 58.946 47.619 0.00 0.00 42.62 5.18
3628 3773 2.287547 GCATTTTTCAGACAACCTGCGA 60.288 45.455 0.00 0.00 42.62 5.10
3629 3774 3.300009 CATTTTTCAGACAACCTGCGAC 58.700 45.455 0.00 0.00 42.62 5.19
3630 3775 0.934496 TTTTCAGACAACCTGCGACG 59.066 50.000 0.00 0.00 42.62 5.12
3631 3776 1.495584 TTTCAGACAACCTGCGACGC 61.496 55.000 14.19 14.19 42.62 5.19
3632 3777 2.356313 CAGACAACCTGCGACGCT 60.356 61.111 22.08 0.00 35.89 5.07
3633 3778 2.356313 AGACAACCTGCGACGCTG 60.356 61.111 22.08 20.24 0.00 5.18
3634 3779 4.077188 GACAACCTGCGACGCTGC 62.077 66.667 22.08 3.52 0.00 5.25
3643 3788 4.969196 CGACGCTGCCAGGTGTGT 62.969 66.667 0.00 1.20 0.00 3.72
3644 3789 2.342279 GACGCTGCCAGGTGTGTA 59.658 61.111 0.00 0.00 0.00 2.90
3645 3790 1.301401 GACGCTGCCAGGTGTGTAA 60.301 57.895 0.00 0.00 0.00 2.41
3646 3791 0.673644 GACGCTGCCAGGTGTGTAAT 60.674 55.000 0.00 0.00 0.00 1.89
3647 3792 0.955428 ACGCTGCCAGGTGTGTAATG 60.955 55.000 0.00 0.00 0.00 1.90
3648 3793 1.508088 GCTGCCAGGTGTGTAATGC 59.492 57.895 0.00 0.00 0.00 3.56
3649 3794 1.937546 GCTGCCAGGTGTGTAATGCC 61.938 60.000 0.00 0.00 0.00 4.40
3650 3795 0.322816 CTGCCAGGTGTGTAATGCCT 60.323 55.000 0.00 0.00 0.00 4.75
3651 3796 0.608856 TGCCAGGTGTGTAATGCCTG 60.609 55.000 0.00 0.00 46.83 4.85
3652 3797 0.609131 GCCAGGTGTGTAATGCCTGT 60.609 55.000 8.71 0.00 46.09 4.00
3653 3798 1.339631 GCCAGGTGTGTAATGCCTGTA 60.340 52.381 8.71 0.00 46.09 2.74
3654 3799 2.356135 CCAGGTGTGTAATGCCTGTAC 58.644 52.381 8.71 0.00 46.09 2.90
3655 3800 2.290008 CCAGGTGTGTAATGCCTGTACA 60.290 50.000 8.71 0.00 46.09 2.90
3656 3801 3.002791 CAGGTGTGTAATGCCTGTACAG 58.997 50.000 16.34 16.34 43.42 2.74
3657 3802 2.637872 AGGTGTGTAATGCCTGTACAGT 59.362 45.455 21.18 5.57 32.23 3.55
3658 3803 2.742053 GGTGTGTAATGCCTGTACAGTG 59.258 50.000 21.18 13.48 32.23 3.66
3659 3804 3.399330 GTGTGTAATGCCTGTACAGTGT 58.601 45.455 21.18 0.00 32.23 3.55
3660 3805 4.561938 GGTGTGTAATGCCTGTACAGTGTA 60.562 45.833 21.18 12.42 32.23 2.90
3661 3806 4.992319 GTGTGTAATGCCTGTACAGTGTAA 59.008 41.667 21.18 4.50 32.23 2.41
3662 3807 5.642063 GTGTGTAATGCCTGTACAGTGTAAT 59.358 40.000 21.18 8.33 32.23 1.89
3663 3808 5.641636 TGTGTAATGCCTGTACAGTGTAATG 59.358 40.000 21.18 6.19 32.23 1.90
3664 3809 5.642063 GTGTAATGCCTGTACAGTGTAATGT 59.358 40.000 21.18 3.02 32.23 2.71
3665 3810 5.641636 TGTAATGCCTGTACAGTGTAATGTG 59.358 40.000 21.18 4.76 34.56 3.21
3666 3811 4.551702 ATGCCTGTACAGTGTAATGTGA 57.448 40.909 21.18 0.00 34.56 3.58
3667 3812 3.659786 TGCCTGTACAGTGTAATGTGAC 58.340 45.455 21.18 0.00 34.56 3.67
3668 3813 2.666508 GCCTGTACAGTGTAATGTGACG 59.333 50.000 21.18 2.85 34.56 4.35
3669 3814 2.666508 CCTGTACAGTGTAATGTGACGC 59.333 50.000 21.18 0.00 34.56 5.19
3670 3815 2.666508 CTGTACAGTGTAATGTGACGCC 59.333 50.000 15.06 0.00 34.56 5.68
3671 3816 2.297880 TGTACAGTGTAATGTGACGCCT 59.702 45.455 4.11 0.00 34.56 5.52
3672 3817 3.506844 TGTACAGTGTAATGTGACGCCTA 59.493 43.478 4.11 0.00 34.56 3.93
3673 3818 3.671008 ACAGTGTAATGTGACGCCTAA 57.329 42.857 0.00 0.00 30.46 2.69
3674 3819 3.323243 ACAGTGTAATGTGACGCCTAAC 58.677 45.455 0.00 0.00 30.46 2.34
3675 3820 3.006537 ACAGTGTAATGTGACGCCTAACT 59.993 43.478 0.00 0.00 30.46 2.24
3676 3821 3.367932 CAGTGTAATGTGACGCCTAACTG 59.632 47.826 0.00 0.00 0.00 3.16
3677 3822 3.006537 AGTGTAATGTGACGCCTAACTGT 59.993 43.478 0.00 0.00 0.00 3.55
3678 3823 3.367025 GTGTAATGTGACGCCTAACTGTC 59.633 47.826 0.00 0.00 35.67 3.51
3679 3824 2.831685 AATGTGACGCCTAACTGTCA 57.168 45.000 0.00 0.00 42.49 3.58
3680 3825 2.370281 ATGTGACGCCTAACTGTCAG 57.630 50.000 0.00 0.00 45.08 3.51
3681 3826 0.317160 TGTGACGCCTAACTGTCAGG 59.683 55.000 4.53 0.00 45.08 3.86
3689 3834 3.895232 CCTAACTGTCAGGCACTACAT 57.105 47.619 4.53 0.00 36.02 2.29
3691 3836 5.339008 CCTAACTGTCAGGCACTACATAA 57.661 43.478 4.53 0.00 36.02 1.90
3692 3837 5.730550 CCTAACTGTCAGGCACTACATAAA 58.269 41.667 4.53 0.00 36.02 1.40
3693 3838 6.170506 CCTAACTGTCAGGCACTACATAAAA 58.829 40.000 4.53 0.00 36.02 1.52
3694 3839 6.313905 CCTAACTGTCAGGCACTACATAAAAG 59.686 42.308 4.53 0.00 36.02 2.27
3695 3840 4.579869 ACTGTCAGGCACTACATAAAAGG 58.420 43.478 4.53 0.00 36.02 3.11
3696 3841 4.286032 ACTGTCAGGCACTACATAAAAGGA 59.714 41.667 4.53 0.00 36.02 3.36
3697 3842 5.045578 ACTGTCAGGCACTACATAAAAGGAT 60.046 40.000 4.53 0.00 36.02 3.24
3698 3843 5.428253 TGTCAGGCACTACATAAAAGGATC 58.572 41.667 0.00 0.00 36.02 3.36
3699 3844 5.045942 TGTCAGGCACTACATAAAAGGATCA 60.046 40.000 0.00 0.00 36.02 2.92
3700 3845 5.525378 GTCAGGCACTACATAAAAGGATCAG 59.475 44.000 0.00 0.00 36.02 2.90
3701 3846 4.818546 CAGGCACTACATAAAAGGATCAGG 59.181 45.833 0.00 0.00 36.02 3.86
3702 3847 4.475016 AGGCACTACATAAAAGGATCAGGT 59.525 41.667 0.00 0.00 36.02 4.00
3703 3848 4.576463 GGCACTACATAAAAGGATCAGGTG 59.424 45.833 0.00 0.00 0.00 4.00
3704 3849 4.576463 GCACTACATAAAAGGATCAGGTGG 59.424 45.833 0.00 0.00 0.00 4.61
3705 3850 5.629133 GCACTACATAAAAGGATCAGGTGGA 60.629 44.000 0.00 0.00 0.00 4.02
3706 3851 6.595682 CACTACATAAAAGGATCAGGTGGAT 58.404 40.000 0.00 0.00 39.53 3.41
3707 3852 6.484643 CACTACATAAAAGGATCAGGTGGATG 59.515 42.308 0.00 0.00 36.00 3.51
3708 3853 5.715439 ACATAAAAGGATCAGGTGGATGA 57.285 39.130 0.00 0.00 36.00 2.92
3709 3854 6.078456 ACATAAAAGGATCAGGTGGATGAA 57.922 37.500 0.00 0.00 36.00 2.57
3710 3855 6.676558 ACATAAAAGGATCAGGTGGATGAAT 58.323 36.000 0.00 0.00 36.00 2.57
3711 3856 7.128077 ACATAAAAGGATCAGGTGGATGAATT 58.872 34.615 0.00 0.00 36.00 2.17
3712 3857 7.620888 ACATAAAAGGATCAGGTGGATGAATTT 59.379 33.333 0.00 0.00 36.00 1.82
3713 3858 6.940430 AAAAGGATCAGGTGGATGAATTTT 57.060 33.333 0.00 0.00 36.00 1.82
3714 3859 6.940430 AAAGGATCAGGTGGATGAATTTTT 57.060 33.333 0.00 0.00 36.00 1.94
3735 3880 6.580963 TTTTCGTCAATGGTTCATTTTGTG 57.419 33.333 0.00 0.00 31.05 3.33
3736 3881 5.506686 TTCGTCAATGGTTCATTTTGTGA 57.493 34.783 0.00 0.00 31.05 3.58
3737 3882 5.703978 TCGTCAATGGTTCATTTTGTGAT 57.296 34.783 0.00 0.00 36.54 3.06
3738 3883 6.809630 TCGTCAATGGTTCATTTTGTGATA 57.190 33.333 0.00 0.00 36.54 2.15
3739 3884 7.389803 TCGTCAATGGTTCATTTTGTGATAT 57.610 32.000 0.00 0.00 36.54 1.63
3740 3885 7.825681 TCGTCAATGGTTCATTTTGTGATATT 58.174 30.769 0.00 0.00 36.54 1.28
3741 3886 7.754475 TCGTCAATGGTTCATTTTGTGATATTG 59.246 33.333 0.00 0.00 36.54 1.90
3742 3887 7.541783 CGTCAATGGTTCATTTTGTGATATTGT 59.458 33.333 0.00 0.00 36.54 2.71
3743 3888 9.206870 GTCAATGGTTCATTTTGTGATATTGTT 57.793 29.630 0.00 0.00 36.54 2.83
3744 3889 9.775854 TCAATGGTTCATTTTGTGATATTGTTT 57.224 25.926 0.00 0.00 36.54 2.83
3746 3891 7.865875 TGGTTCATTTTGTGATATTGTTTCG 57.134 32.000 0.00 0.00 36.54 3.46
3747 3892 7.429633 TGGTTCATTTTGTGATATTGTTTCGT 58.570 30.769 0.00 0.00 36.54 3.85
3748 3893 7.923344 TGGTTCATTTTGTGATATTGTTTCGTT 59.077 29.630 0.00 0.00 36.54 3.85
3749 3894 8.760569 GGTTCATTTTGTGATATTGTTTCGTTT 58.239 29.630 0.00 0.00 36.54 3.60
3752 3897 9.952188 TCATTTTGTGATATTGTTTCGTTTACA 57.048 25.926 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.223249 CGCATTGTTATCGGACAAAGGG 60.223 50.000 4.51 5.13 42.29 3.95
66 67 3.262420 GACAAACTGTCATAGGTCGCAT 58.738 45.455 1.92 0.00 46.22 4.73
103 104 5.843019 AAGTTGTCCTTAGATTTCAGGGA 57.157 39.130 0.00 0.00 0.00 4.20
104 105 6.940298 TGTAAAGTTGTCCTTAGATTTCAGGG 59.060 38.462 0.00 0.00 31.48 4.45
115 116 7.012989 GTGACCTTTATGTGTAAAGTTGTCCTT 59.987 37.037 7.05 0.00 43.37 3.36
151 152 5.176407 ACTGCTTTGCGTGTAAATAACAA 57.824 34.783 0.00 0.00 40.63 2.83
162 163 1.247567 AATGGCTAACTGCTTTGCGT 58.752 45.000 0.00 0.00 42.39 5.24
163 164 2.792542 GCTAATGGCTAACTGCTTTGCG 60.793 50.000 0.00 0.00 42.39 4.85
164 165 2.802256 GCTAATGGCTAACTGCTTTGC 58.198 47.619 0.00 0.00 42.39 3.68
176 177 3.248602 CGGTATCTTGTTCAGCTAATGGC 59.751 47.826 0.00 0.00 42.19 4.40
251 253 1.133637 TCTTGGGCAAGCAACCTAACA 60.134 47.619 0.00 0.00 38.28 2.41
270 272 6.592607 TCGAATTGGTGTTCAACTAATACCTC 59.407 38.462 5.45 0.00 46.66 3.85
290 292 7.315890 TCATTCTGCGTCTATCAATATCGAAT 58.684 34.615 0.00 0.00 0.00 3.34
297 299 5.521735 GTGTTCTCATTCTGCGTCTATCAAT 59.478 40.000 0.00 0.00 0.00 2.57
300 302 4.502282 CAGTGTTCTCATTCTGCGTCTATC 59.498 45.833 0.00 0.00 0.00 2.08
328 330 8.960591 CAGTCAATGACTAAATCAAGGGTAAAT 58.039 33.333 16.28 0.00 41.37 1.40
347 349 4.875536 TCGTATATGCAAAGCACAGTCAAT 59.124 37.500 0.00 0.00 43.04 2.57
349 351 3.855858 TCGTATATGCAAAGCACAGTCA 58.144 40.909 0.00 0.00 43.04 3.41
361 363 6.423001 CCTAAAGGTACCAAACTCGTATATGC 59.577 42.308 15.94 0.00 0.00 3.14
368 370 3.260128 ACTCCCTAAAGGTACCAAACTCG 59.740 47.826 15.94 0.00 36.75 4.18
372 374 5.414171 TCCTAACTCCCTAAAGGTACCAAA 58.586 41.667 15.94 0.00 36.75 3.28
382 384 3.308188 GGCAGCTTTTCCTAACTCCCTAA 60.308 47.826 0.00 0.00 0.00 2.69
441 445 7.910683 GCTTTCATTTGCTAACACCTACTTATC 59.089 37.037 0.00 0.00 0.00 1.75
442 446 7.611855 AGCTTTCATTTGCTAACACCTACTTAT 59.388 33.333 0.00 0.00 37.81 1.73
443 447 6.940298 AGCTTTCATTTGCTAACACCTACTTA 59.060 34.615 0.00 0.00 37.81 2.24
444 448 5.770162 AGCTTTCATTTGCTAACACCTACTT 59.230 36.000 0.00 0.00 37.81 2.24
445 449 5.316987 AGCTTTCATTTGCTAACACCTACT 58.683 37.500 0.00 0.00 37.81 2.57
446 450 5.181245 TGAGCTTTCATTTGCTAACACCTAC 59.819 40.000 0.00 0.00 39.91 3.18
473 477 8.394877 TCACACAAGTTACAATAGAAACAACAG 58.605 33.333 0.00 0.00 0.00 3.16
511 515 9.654663 ACAATTCAGTTAAGATAGTGTTCCTAC 57.345 33.333 0.00 0.00 0.00 3.18
523 527 7.624549 AGCCTGAGATTACAATTCAGTTAAGA 58.375 34.615 0.72 0.00 37.27 2.10
593 597 6.939730 AGTCCCAACTTCAATTTGTTTTGTTT 59.060 30.769 0.00 0.00 28.74 2.83
610 614 7.754851 TTTAAATAAGTGGAGAAGTCCCAAC 57.245 36.000 0.00 0.00 43.15 3.77
628 632 9.965902 AGAAGTCAGAGAATACCACATTTAAAT 57.034 29.630 0.00 0.00 0.00 1.40
631 635 7.824289 CCAAGAAGTCAGAGAATACCACATTTA 59.176 37.037 0.00 0.00 0.00 1.40
675 684 1.167851 TGCAGCCTCACATGCTAAAC 58.832 50.000 0.00 0.00 42.98 2.01
679 688 1.203994 GAATTTGCAGCCTCACATGCT 59.796 47.619 0.00 0.00 42.98 3.79
720 729 7.285401 CCCCTCTACATGCAGTAAATACATTTT 59.715 37.037 0.00 0.00 30.92 1.82
768 780 2.230660 GGCATATCCACACCTAAAGCC 58.769 52.381 0.00 0.00 34.01 4.35
809 821 1.985473 TCAAGGCACATGAAAGCACT 58.015 45.000 0.00 0.00 31.17 4.40
816 828 2.655090 TCCAGTTTCAAGGCACATGA 57.345 45.000 0.00 0.00 32.76 3.07
822 876 5.760743 GGAGAGTAATATCCAGTTTCAAGGC 59.239 44.000 0.00 0.00 35.54 4.35
840 894 3.450028 GCTCAAAGCGATGGAGAGT 57.550 52.632 6.78 0.00 0.00 3.24
857 911 4.142966 GGTTTGGTTTATCACTACGACAGC 60.143 45.833 0.00 0.00 0.00 4.40
871 925 2.965147 CCACTCCAGATTGGTTTGGTTT 59.035 45.455 8.63 0.00 39.03 3.27
872 926 2.091333 ACCACTCCAGATTGGTTTGGTT 60.091 45.455 13.95 3.82 45.23 3.67
873 927 1.499007 ACCACTCCAGATTGGTTTGGT 59.501 47.619 13.95 13.95 43.84 3.67
874 928 2.292828 ACCACTCCAGATTGGTTTGG 57.707 50.000 3.97 13.00 40.91 3.28
903 957 5.690865 AGAACAAGTGTGAGGAAACCATTA 58.309 37.500 0.00 0.00 0.00 1.90
925 979 8.297426 TCATAAGATATACAGCGGTTCAAGTAG 58.703 37.037 0.00 0.00 0.00 2.57
936 990 8.909708 CTGTAGCTCTTCATAAGATATACAGC 57.090 38.462 18.53 7.75 42.73 4.40
949 1003 1.103803 CCGTAGGCTGTAGCTCTTCA 58.896 55.000 0.00 0.00 46.14 3.02
1028 1082 2.431454 TGCATGCGTAGGTGATTTGAA 58.569 42.857 14.09 0.00 0.00 2.69
1129 1183 8.094284 TGAACCTTGGATGCATATATATAGCT 57.906 34.615 0.00 0.00 0.00 3.32
1159 1213 8.795842 ATAACTTGTAGGAGACGGATATAGAG 57.204 38.462 0.00 0.00 0.00 2.43
1208 1264 4.053295 GCAAAGTGAAGTTCGTACAGGTA 58.947 43.478 0.00 0.00 0.00 3.08
1236 1292 9.443323 TCCATTTATATGAAAGAACGAGTGAAA 57.557 29.630 0.00 0.00 33.37 2.69
1381 1480 1.300927 ATGGGATAACAAACGGGGGA 58.699 50.000 0.00 0.00 0.00 4.81
1387 1486 3.509575 TGACTGGCAATGGGATAACAAAC 59.490 43.478 0.00 0.00 0.00 2.93
1478 1580 2.489329 ACGAAATTGCTCATCAAGGTGG 59.511 45.455 0.00 0.00 38.22 4.61
1529 1631 6.215845 CACAACTTCTTCCACAAAATTAGGG 58.784 40.000 0.00 0.00 0.00 3.53
1671 1787 3.624861 CCCTGCAGTGATTTCATGTCTAC 59.375 47.826 13.81 0.00 0.00 2.59
1799 1915 2.740981 GAGCTGAATCCGCATCATAAGG 59.259 50.000 0.00 0.00 0.00 2.69
1810 1926 2.947127 AAGGCCTATGAGCTGAATCC 57.053 50.000 5.16 0.00 0.00 3.01
1870 1998 3.681417 CCCCACGTGCTTAACTAAACTAC 59.319 47.826 10.91 0.00 0.00 2.73
1889 2018 2.440980 GGGTGCATCAGCTTCCCC 60.441 66.667 0.00 0.00 44.11 4.81
1921 2056 4.337555 CAGTTAGCCTCCATCTTCATTTGG 59.662 45.833 0.00 0.00 0.00 3.28
2029 2164 3.621715 GCTAATAATATAGCGGTGTGGCC 59.378 47.826 0.00 0.00 38.98 5.36
2151 2290 6.974622 GCAAAATGAACTCAGAAACTTGAGAA 59.025 34.615 9.78 0.00 45.95 2.87
2182 2321 2.900122 TTAGACGCATGCTTTCTTGC 57.100 45.000 20.17 0.00 39.26 4.01
2251 2390 3.353600 CACCGATGCTGCACCAAA 58.646 55.556 3.57 0.00 0.00 3.28
2348 2487 6.112734 AGAAGTAATGCATCGACATGGTTTA 58.887 36.000 0.00 0.00 0.00 2.01
2350 2489 4.517285 AGAAGTAATGCATCGACATGGTT 58.483 39.130 0.00 0.00 0.00 3.67
2351 2490 4.142609 AGAAGTAATGCATCGACATGGT 57.857 40.909 0.00 0.00 0.00 3.55
2368 2507 7.337942 ACAATAGAGATAAAGCCCACAAAGAAG 59.662 37.037 0.00 0.00 0.00 2.85
2374 2513 7.450014 TGAAAAACAATAGAGATAAAGCCCACA 59.550 33.333 0.00 0.00 0.00 4.17
2421 2562 4.202151 ACAAAGTGGCATGGAGTTCTTTTC 60.202 41.667 0.00 0.00 0.00 2.29
2438 2579 8.983307 TTTTGGTTTTATAACAACGACAAAGT 57.017 26.923 0.00 0.00 35.92 2.66
2492 2633 6.422776 AAGTAACGGCTGTTTTCATCATAG 57.577 37.500 17.69 0.00 39.54 2.23
2518 2659 4.202040 TGCATACCAGAATAAAGCACATGC 60.202 41.667 0.00 0.00 42.49 4.06
2641 2782 5.029807 TCAACTGTTATGACACCAAGACA 57.970 39.130 0.00 0.00 0.00 3.41
2655 2796 7.118680 GCAAATTGATGGAAATGATCAACTGTT 59.881 33.333 0.00 0.00 41.46 3.16
2685 2827 6.360618 TGCATGGTAACCATACATACATCAA 58.639 36.000 0.00 0.00 43.15 2.57
2740 2882 0.911525 ACATGGCAGGTCTAGTGGCT 60.912 55.000 0.00 0.00 41.01 4.75
2768 2910 1.282875 GCGAACGCCAAAAGCTCTT 59.717 52.632 8.03 0.00 40.39 2.85
2789 2931 2.620251 TGCTCCATAATTAGTGCGCT 57.380 45.000 9.73 4.58 0.00 5.92
2861 3005 1.192146 AGAGTTGCGCCTACTCCCAA 61.192 55.000 26.67 2.63 42.35 4.12
2886 3030 5.696270 CCAGTATTATTGATTCGCTGTAGCA 59.304 40.000 4.59 0.00 42.21 3.49
2888 3032 9.809096 ATATCCAGTATTATTGATTCGCTGTAG 57.191 33.333 0.00 0.00 0.00 2.74
2921 3065 8.637196 AACGAGTATCATCATATCTAAGTGGA 57.363 34.615 0.00 0.00 33.17 4.02
2954 3098 4.592778 GGCCTCTCATCTCTCCTTATTTCT 59.407 45.833 0.00 0.00 0.00 2.52
2979 3123 7.223260 TCTTTCACTCTCGTATTTACTTGGA 57.777 36.000 0.00 0.00 0.00 3.53
2980 3124 7.010552 CCATCTTTCACTCTCGTATTTACTTGG 59.989 40.741 0.00 0.00 0.00 3.61
3181 3326 2.159531 GATACAAATCAAGCGCTGTGCA 60.160 45.455 12.58 0.00 37.85 4.57
3274 3419 6.206243 CCAGAATAGTGATTTTGGCCTCTATG 59.794 42.308 3.32 0.00 39.67 2.23
3279 3424 4.591321 TCCAGAATAGTGATTTTGGCCT 57.409 40.909 3.32 0.00 43.82 5.19
3281 3426 6.455360 TTCATCCAGAATAGTGATTTTGGC 57.545 37.500 3.03 0.00 43.82 4.52
3283 3428 9.865321 ATTGTTTCATCCAGAATAGTGATTTTG 57.135 29.630 0.00 0.00 35.83 2.44
3288 3433 9.330063 GTGATATTGTTTCATCCAGAATAGTGA 57.670 33.333 0.00 0.00 35.83 3.41
3289 3434 9.112725 TGTGATATTGTTTCATCCAGAATAGTG 57.887 33.333 0.00 0.00 35.83 2.74
3290 3435 9.685276 TTGTGATATTGTTTCATCCAGAATAGT 57.315 29.630 0.00 0.00 35.83 2.12
3294 3439 9.642327 CATTTTGTGATATTGTTTCATCCAGAA 57.358 29.630 0.00 0.00 0.00 3.02
3295 3440 9.022884 TCATTTTGTGATATTGTTTCATCCAGA 57.977 29.630 0.00 0.00 0.00 3.86
3296 3441 9.642327 TTCATTTTGTGATATTGTTTCATCCAG 57.358 29.630 0.00 0.00 36.54 3.86
3297 3442 9.421806 GTTCATTTTGTGATATTGTTTCATCCA 57.578 29.630 0.00 0.00 36.54 3.41
3298 3443 9.643693 AGTTCATTTTGTGATATTGTTTCATCC 57.356 29.630 0.00 0.00 36.54 3.51
3300 3445 9.985730 ACAGTTCATTTTGTGATATTGTTTCAT 57.014 25.926 0.00 0.00 36.54 2.57
3301 3446 9.814899 AACAGTTCATTTTGTGATATTGTTTCA 57.185 25.926 0.00 0.00 36.54 2.69
3303 3448 9.814899 TCAACAGTTCATTTTGTGATATTGTTT 57.185 25.926 0.00 0.00 36.54 2.83
3304 3449 9.985730 ATCAACAGTTCATTTTGTGATATTGTT 57.014 25.926 0.00 0.00 36.54 2.83
3305 3450 9.414295 CATCAACAGTTCATTTTGTGATATTGT 57.586 29.630 0.00 0.00 36.54 2.71
3306 3451 9.414295 ACATCAACAGTTCATTTTGTGATATTG 57.586 29.630 0.00 0.00 36.54 1.90
3310 3455 9.985730 AATTACATCAACAGTTCATTTTGTGAT 57.014 25.926 0.00 0.00 36.54 3.06
3311 3456 9.814899 AAATTACATCAACAGTTCATTTTGTGA 57.185 25.926 0.00 0.00 34.25 3.58
3337 3482 2.943036 AAGAGTCAGCCGGGTAAAAA 57.057 45.000 5.47 0.00 0.00 1.94
3338 3483 2.882137 CAAAAGAGTCAGCCGGGTAAAA 59.118 45.455 5.47 0.00 0.00 1.52
3339 3484 2.158726 ACAAAAGAGTCAGCCGGGTAAA 60.159 45.455 5.47 0.00 0.00 2.01
3340 3485 1.418637 ACAAAAGAGTCAGCCGGGTAA 59.581 47.619 5.47 0.00 0.00 2.85
3341 3486 1.053424 ACAAAAGAGTCAGCCGGGTA 58.947 50.000 5.47 0.00 0.00 3.69
3342 3487 0.535102 CACAAAAGAGTCAGCCGGGT 60.535 55.000 0.00 0.00 0.00 5.28
3343 3488 0.535102 ACACAAAAGAGTCAGCCGGG 60.535 55.000 2.18 0.00 0.00 5.73
3344 3489 2.069273 CTACACAAAAGAGTCAGCCGG 58.931 52.381 0.00 0.00 0.00 6.13
3345 3490 2.476619 CACTACACAAAAGAGTCAGCCG 59.523 50.000 0.00 0.00 0.00 5.52
3346 3491 2.224314 GCACTACACAAAAGAGTCAGCC 59.776 50.000 0.00 0.00 0.00 4.85
3347 3492 2.224314 GGCACTACACAAAAGAGTCAGC 59.776 50.000 0.00 0.00 0.00 4.26
3348 3493 2.808543 GGGCACTACACAAAAGAGTCAG 59.191 50.000 0.00 0.00 0.00 3.51
3349 3494 2.171659 TGGGCACTACACAAAAGAGTCA 59.828 45.455 0.00 0.00 0.00 3.41
3350 3495 2.548480 GTGGGCACTACACAAAAGAGTC 59.452 50.000 0.00 0.00 40.52 3.36
3351 3496 2.092646 TGTGGGCACTACACAAAAGAGT 60.093 45.455 0.00 0.00 44.03 3.24
3352 3497 2.549754 CTGTGGGCACTACACAAAAGAG 59.450 50.000 0.00 0.00 44.03 2.85
3353 3498 2.092646 ACTGTGGGCACTACACAAAAGA 60.093 45.455 0.00 0.00 44.03 2.52
3354 3499 2.297701 ACTGTGGGCACTACACAAAAG 58.702 47.619 0.00 0.00 44.03 2.27
3355 3500 2.428544 ACTGTGGGCACTACACAAAA 57.571 45.000 0.00 0.00 44.03 2.44
3356 3501 2.428544 AACTGTGGGCACTACACAAA 57.571 45.000 0.00 0.00 44.03 2.83
3357 3502 2.224426 CCTAACTGTGGGCACTACACAA 60.224 50.000 0.00 0.00 44.03 3.33
3358 3503 1.346395 CCTAACTGTGGGCACTACACA 59.654 52.381 0.00 0.00 44.03 3.72
3359 3504 1.944430 GCCTAACTGTGGGCACTACAC 60.944 57.143 16.70 0.00 44.03 2.90
3367 3512 2.746277 GTGGCGCCTAACTGTGGG 60.746 66.667 29.70 0.00 0.00 4.61
3368 3513 2.031919 TGTGGCGCCTAACTGTGG 59.968 61.111 29.70 0.00 0.00 4.17
3369 3514 1.301716 AGTGTGGCGCCTAACTGTG 60.302 57.895 29.70 0.00 0.00 3.66
3370 3515 1.301716 CAGTGTGGCGCCTAACTGT 60.302 57.895 35.00 16.83 36.20 3.55
3371 3516 0.037697 TACAGTGTGGCGCCTAACTG 60.038 55.000 38.33 38.33 44.46 3.16
3372 3517 0.682852 TTACAGTGTGGCGCCTAACT 59.317 50.000 29.70 26.18 0.00 2.24
3373 3518 1.396996 CATTACAGTGTGGCGCCTAAC 59.603 52.381 29.70 24.34 0.00 2.34
3374 3519 1.002659 ACATTACAGTGTGGCGCCTAA 59.997 47.619 29.70 16.82 0.00 2.69
3375 3520 0.611200 ACATTACAGTGTGGCGCCTA 59.389 50.000 29.70 14.39 0.00 3.93
3376 3521 0.955428 CACATTACAGTGTGGCGCCT 60.955 55.000 29.70 8.67 44.41 5.52
3377 3522 1.501741 CACATTACAGTGTGGCGCC 59.498 57.895 22.73 22.73 44.41 6.53
3379 3524 2.473610 ACTGCACATTACAGTGTGGCG 61.474 52.381 5.88 0.00 46.38 5.69
3380 3525 1.238439 ACTGCACATTACAGTGTGGC 58.762 50.000 5.88 2.61 46.38 5.01
3397 3542 4.787871 GCTTGTCAGTCAGGCACT 57.212 55.556 0.00 0.00 46.35 4.40
3400 3545 1.079819 TAGCGCTTGTCAGTCAGGC 60.080 57.895 18.68 0.00 44.16 4.85
3401 3546 0.038251 TGTAGCGCTTGTCAGTCAGG 60.038 55.000 18.68 0.00 0.00 3.86
3402 3547 1.063806 GTGTAGCGCTTGTCAGTCAG 58.936 55.000 18.68 0.00 0.00 3.51
3403 3548 0.663269 CGTGTAGCGCTTGTCAGTCA 60.663 55.000 18.68 1.17 0.00 3.41
3404 3549 2.062779 CGTGTAGCGCTTGTCAGTC 58.937 57.895 18.68 1.62 0.00 3.51
3405 3550 4.245054 CGTGTAGCGCTTGTCAGT 57.755 55.556 18.68 0.00 0.00 3.41
3415 3560 2.586357 GCTGGCTAGGCGTGTAGC 60.586 66.667 12.19 11.00 44.14 3.58
3416 3561 2.278857 CGCTGGCTAGGCGTGTAG 60.279 66.667 12.19 4.40 46.37 2.74
3422 3567 4.899239 ATGCGACGCTGGCTAGGC 62.899 66.667 22.08 9.85 0.00 3.93
3423 3568 2.659897 GATGCGACGCTGGCTAGG 60.660 66.667 22.08 0.00 0.00 3.02
3424 3569 2.659897 GGATGCGACGCTGGCTAG 60.660 66.667 22.08 0.00 0.00 3.42
3425 3570 3.147595 AGGATGCGACGCTGGCTA 61.148 61.111 22.08 0.00 0.00 3.93
3426 3571 4.827087 CAGGATGCGACGCTGGCT 62.827 66.667 22.08 2.86 0.00 4.75
3428 3573 4.147449 TCCAGGATGCGACGCTGG 62.147 66.667 22.08 19.38 36.59 4.85
3429 3574 2.887568 GTCCAGGATGCGACGCTG 60.888 66.667 22.08 10.60 31.97 5.18
3430 3575 3.071206 AGTCCAGGATGCGACGCT 61.071 61.111 22.08 6.44 39.98 5.07
3431 3576 2.887568 CAGTCCAGGATGCGACGC 60.888 66.667 14.19 14.19 39.98 5.19
3432 3577 2.887568 GCAGTCCAGGATGCGACG 60.888 66.667 7.78 0.00 39.98 5.12
3433 3578 1.153289 ATGCAGTCCAGGATGCGAC 60.153 57.895 15.20 0.00 45.54 5.19
3434 3579 1.153309 CATGCAGTCCAGGATGCGA 60.153 57.895 15.20 8.11 45.54 5.10
3435 3580 0.745486 TTCATGCAGTCCAGGATGCG 60.745 55.000 15.20 6.13 45.54 4.73
3436 3581 1.466856 TTTCATGCAGTCCAGGATGC 58.533 50.000 13.98 13.98 42.86 3.91
3437 3582 4.430007 CAATTTTCATGCAGTCCAGGATG 58.570 43.478 0.00 0.00 38.52 3.51
3438 3583 3.118884 GCAATTTTCATGCAGTCCAGGAT 60.119 43.478 0.00 0.00 43.29 3.24
3439 3584 2.231964 GCAATTTTCATGCAGTCCAGGA 59.768 45.455 0.00 0.00 43.29 3.86
3440 3585 2.232941 AGCAATTTTCATGCAGTCCAGG 59.767 45.455 0.00 0.00 46.22 4.45
3441 3586 3.587797 AGCAATTTTCATGCAGTCCAG 57.412 42.857 0.00 0.00 46.22 3.86
3442 3587 5.465532 TTTAGCAATTTTCATGCAGTCCA 57.534 34.783 0.00 0.00 46.22 4.02
3443 3588 6.101332 TGATTTAGCAATTTTCATGCAGTCC 58.899 36.000 0.00 0.00 46.22 3.85
3444 3589 7.218145 CTGATTTAGCAATTTTCATGCAGTC 57.782 36.000 0.00 0.00 46.22 3.51
3460 3605 6.253727 CACCTAAACACTAGACGCTGATTTAG 59.746 42.308 0.00 2.47 0.00 1.85
3461 3606 6.097356 CACCTAAACACTAGACGCTGATTTA 58.903 40.000 0.00 0.00 0.00 1.40
3462 3607 4.929808 CACCTAAACACTAGACGCTGATTT 59.070 41.667 0.00 0.00 0.00 2.17
3463 3608 4.021368 ACACCTAAACACTAGACGCTGATT 60.021 41.667 0.00 0.00 0.00 2.57
3464 3609 3.510360 ACACCTAAACACTAGACGCTGAT 59.490 43.478 0.00 0.00 0.00 2.90
3465 3610 2.889045 ACACCTAAACACTAGACGCTGA 59.111 45.455 0.00 0.00 0.00 4.26
3466 3611 3.299340 ACACCTAAACACTAGACGCTG 57.701 47.619 0.00 0.00 0.00 5.18
3467 3612 3.650139 CAACACCTAAACACTAGACGCT 58.350 45.455 0.00 0.00 0.00 5.07
3468 3613 2.157085 GCAACACCTAAACACTAGACGC 59.843 50.000 0.00 0.00 0.00 5.19
3469 3614 3.386486 TGCAACACCTAAACACTAGACG 58.614 45.455 0.00 0.00 0.00 4.18
3470 3615 5.941948 AATGCAACACCTAAACACTAGAC 57.058 39.130 0.00 0.00 0.00 2.59
3471 3616 6.649141 CACTAATGCAACACCTAAACACTAGA 59.351 38.462 0.00 0.00 0.00 2.43
3472 3617 6.128282 CCACTAATGCAACACCTAAACACTAG 60.128 42.308 0.00 0.00 0.00 2.57
3473 3618 5.703592 CCACTAATGCAACACCTAAACACTA 59.296 40.000 0.00 0.00 0.00 2.74
3474 3619 4.518970 CCACTAATGCAACACCTAAACACT 59.481 41.667 0.00 0.00 0.00 3.55
3475 3620 4.794169 CCACTAATGCAACACCTAAACAC 58.206 43.478 0.00 0.00 0.00 3.32
3476 3621 3.254657 GCCACTAATGCAACACCTAAACA 59.745 43.478 0.00 0.00 0.00 2.83
3477 3622 3.506067 AGCCACTAATGCAACACCTAAAC 59.494 43.478 0.00 0.00 0.00 2.01
3478 3623 3.505680 CAGCCACTAATGCAACACCTAAA 59.494 43.478 0.00 0.00 0.00 1.85
3479 3624 3.081061 CAGCCACTAATGCAACACCTAA 58.919 45.455 0.00 0.00 0.00 2.69
3480 3625 2.710377 CAGCCACTAATGCAACACCTA 58.290 47.619 0.00 0.00 0.00 3.08
3481 3626 1.538047 CAGCCACTAATGCAACACCT 58.462 50.000 0.00 0.00 0.00 4.00
3482 3627 0.109132 GCAGCCACTAATGCAACACC 60.109 55.000 0.00 0.00 42.11 4.16
3483 3628 3.406682 GCAGCCACTAATGCAACAC 57.593 52.632 0.00 0.00 42.11 3.32
3501 3646 6.676456 GCTTCAAGATGTAGTGGCAAATAGTG 60.676 42.308 0.00 0.00 0.00 2.74
3502 3647 5.355350 GCTTCAAGATGTAGTGGCAAATAGT 59.645 40.000 0.00 0.00 0.00 2.12
3503 3648 5.503031 CGCTTCAAGATGTAGTGGCAAATAG 60.503 44.000 0.00 0.00 0.00 1.73
3504 3649 4.332543 CGCTTCAAGATGTAGTGGCAAATA 59.667 41.667 0.00 0.00 0.00 1.40
3505 3650 3.127548 CGCTTCAAGATGTAGTGGCAAAT 59.872 43.478 0.00 0.00 0.00 2.32
3506 3651 2.483877 CGCTTCAAGATGTAGTGGCAAA 59.516 45.455 0.00 0.00 0.00 3.68
3507 3652 2.076100 CGCTTCAAGATGTAGTGGCAA 58.924 47.619 0.00 0.00 0.00 4.52
3508 3653 1.675714 CCGCTTCAAGATGTAGTGGCA 60.676 52.381 4.06 0.00 38.32 4.92
3509 3654 1.009829 CCGCTTCAAGATGTAGTGGC 58.990 55.000 4.06 0.00 38.32 5.01
3510 3655 1.009829 GCCGCTTCAAGATGTAGTGG 58.990 55.000 10.99 10.99 44.88 4.00
3511 3656 1.009829 GGCCGCTTCAAGATGTAGTG 58.990 55.000 0.00 0.00 0.00 2.74
3512 3657 0.613260 TGGCCGCTTCAAGATGTAGT 59.387 50.000 0.00 0.00 0.00 2.73
3513 3658 1.009829 GTGGCCGCTTCAAGATGTAG 58.990 55.000 9.68 0.00 0.00 2.74
3514 3659 0.613260 AGTGGCCGCTTCAAGATGTA 59.387 50.000 14.67 0.00 0.00 2.29
3515 3660 0.613260 TAGTGGCCGCTTCAAGATGT 59.387 50.000 26.67 0.00 0.00 3.06
3516 3661 1.293924 CTAGTGGCCGCTTCAAGATG 58.706 55.000 26.67 2.77 0.00 2.90
3517 3662 0.905357 ACTAGTGGCCGCTTCAAGAT 59.095 50.000 26.67 0.00 0.00 2.40
3518 3663 0.037326 CACTAGTGGCCGCTTCAAGA 60.037 55.000 26.67 4.59 0.00 3.02
3519 3664 1.639298 GCACTAGTGGCCGCTTCAAG 61.639 60.000 26.67 18.43 0.00 3.02
3520 3665 1.671054 GCACTAGTGGCCGCTTCAA 60.671 57.895 26.67 5.47 0.00 2.69
3521 3666 2.047274 GCACTAGTGGCCGCTTCA 60.047 61.111 26.67 6.33 0.00 3.02
3522 3667 2.047274 TGCACTAGTGGCCGCTTC 60.047 61.111 26.67 11.92 0.00 3.86
3523 3668 2.046892 CTGCACTAGTGGCCGCTT 60.047 61.111 26.67 3.91 0.00 4.68
3524 3669 4.767255 GCTGCACTAGTGGCCGCT 62.767 66.667 24.75 24.75 38.29 5.52
3526 3671 4.742201 ACGCTGCACTAGTGGCCG 62.742 66.667 23.95 16.33 41.29 6.13
3527 3672 1.945354 TAGACGCTGCACTAGTGGCC 61.945 60.000 23.95 9.14 46.57 5.36
3528 3673 0.108804 TTAGACGCTGCACTAGTGGC 60.109 55.000 23.95 17.81 45.70 5.01
3529 3674 1.630148 GTTAGACGCTGCACTAGTGG 58.370 55.000 23.95 9.71 41.29 4.00
3530 3675 1.260206 CGTTAGACGCTGCACTAGTG 58.740 55.000 18.93 18.93 42.68 2.74
3531 3676 3.696782 CGTTAGACGCTGCACTAGT 57.303 52.632 0.00 0.00 33.65 2.57
3541 3686 1.399440 TGTAGTGCCTAGCGTTAGACG 59.601 52.381 8.00 0.00 45.88 4.18
3542 3687 3.712091 ATGTAGTGCCTAGCGTTAGAC 57.288 47.619 8.00 0.00 0.00 2.59
3543 3688 3.446161 ACAATGTAGTGCCTAGCGTTAGA 59.554 43.478 8.00 0.00 0.00 2.10
3544 3689 3.782046 ACAATGTAGTGCCTAGCGTTAG 58.218 45.455 0.00 0.00 0.00 2.34
3545 3690 3.880047 ACAATGTAGTGCCTAGCGTTA 57.120 42.857 0.00 0.00 0.00 3.18
3546 3691 2.762535 ACAATGTAGTGCCTAGCGTT 57.237 45.000 0.00 0.00 0.00 4.84
3547 3692 2.762535 AACAATGTAGTGCCTAGCGT 57.237 45.000 0.00 0.00 0.00 5.07
3548 3693 2.029244 CGAAACAATGTAGTGCCTAGCG 59.971 50.000 0.00 0.00 0.00 4.26
3549 3694 3.000727 ACGAAACAATGTAGTGCCTAGC 58.999 45.455 0.00 0.00 0.00 3.42
3550 3695 3.994392 ACACGAAACAATGTAGTGCCTAG 59.006 43.478 13.64 0.00 36.38 3.02
3551 3696 3.997762 ACACGAAACAATGTAGTGCCTA 58.002 40.909 13.64 0.00 36.38 3.93
3552 3697 2.846193 ACACGAAACAATGTAGTGCCT 58.154 42.857 13.64 0.00 36.38 4.75
3553 3698 3.991773 TCTACACGAAACAATGTAGTGCC 59.008 43.478 13.64 0.00 45.65 5.01
3554 3699 5.191595 CTCTACACGAAACAATGTAGTGC 57.808 43.478 13.64 0.00 45.65 4.40
3555 3700 4.091509 GGCTCTACACGAAACAATGTAGTG 59.908 45.833 12.60 12.60 45.65 2.74
3556 3701 4.021368 AGGCTCTACACGAAACAATGTAGT 60.021 41.667 10.34 0.00 45.65 2.73
3557 3702 4.495422 AGGCTCTACACGAAACAATGTAG 58.505 43.478 5.26 5.26 46.46 2.74
3558 3703 4.530710 AGGCTCTACACGAAACAATGTA 57.469 40.909 0.00 0.00 0.00 2.29
3559 3704 3.402628 AGGCTCTACACGAAACAATGT 57.597 42.857 0.00 0.00 0.00 2.71
3560 3705 3.307242 GCTAGGCTCTACACGAAACAATG 59.693 47.826 0.00 0.00 0.00 2.82
3561 3706 3.195825 AGCTAGGCTCTACACGAAACAAT 59.804 43.478 0.00 0.00 30.62 2.71
3562 3707 2.561419 AGCTAGGCTCTACACGAAACAA 59.439 45.455 0.00 0.00 30.62 2.83
3563 3708 2.168496 AGCTAGGCTCTACACGAAACA 58.832 47.619 0.00 0.00 30.62 2.83
3564 3709 2.943449 AGCTAGGCTCTACACGAAAC 57.057 50.000 0.00 0.00 30.62 2.78
3575 3720 0.033405 TAACACCCGAGAGCTAGGCT 60.033 55.000 0.00 0.00 43.88 4.58
3576 3721 1.041437 ATAACACCCGAGAGCTAGGC 58.959 55.000 0.00 0.00 0.00 3.93
3577 3722 1.269831 GCATAACACCCGAGAGCTAGG 60.270 57.143 0.00 0.00 0.00 3.02
3578 3723 1.409064 TGCATAACACCCGAGAGCTAG 59.591 52.381 0.00 0.00 0.00 3.42
3579 3724 1.136305 GTGCATAACACCCGAGAGCTA 59.864 52.381 0.00 0.00 44.02 3.32
3580 3725 0.108138 GTGCATAACACCCGAGAGCT 60.108 55.000 0.00 0.00 44.02 4.09
3581 3726 2.384203 GTGCATAACACCCGAGAGC 58.616 57.895 0.00 0.00 44.02 4.09
3590 3735 6.573664 AAAATGCTAAGTCAGTGCATAACA 57.426 33.333 0.00 0.00 45.29 2.41
3591 3736 7.083858 TGAAAAATGCTAAGTCAGTGCATAAC 58.916 34.615 0.00 0.00 45.29 1.89
3592 3737 7.174772 TCTGAAAAATGCTAAGTCAGTGCATAA 59.825 33.333 0.00 0.00 45.29 1.90
3593 3738 6.654582 TCTGAAAAATGCTAAGTCAGTGCATA 59.345 34.615 0.00 0.00 45.29 3.14
3595 3740 4.821260 TCTGAAAAATGCTAAGTCAGTGCA 59.179 37.500 0.00 0.00 41.13 4.57
3596 3741 5.149977 GTCTGAAAAATGCTAAGTCAGTGC 58.850 41.667 0.00 0.00 37.55 4.40
3597 3742 6.304356 TGTCTGAAAAATGCTAAGTCAGTG 57.696 37.500 0.00 0.00 37.55 3.66
3598 3743 6.238759 GGTTGTCTGAAAAATGCTAAGTCAGT 60.239 38.462 0.00 0.00 37.55 3.41
3599 3744 6.016777 AGGTTGTCTGAAAAATGCTAAGTCAG 60.017 38.462 0.00 0.00 37.62 3.51
3600 3745 5.827797 AGGTTGTCTGAAAAATGCTAAGTCA 59.172 36.000 0.00 0.00 0.00 3.41
3601 3746 6.145535 CAGGTTGTCTGAAAAATGCTAAGTC 58.854 40.000 0.00 0.00 46.18 3.01
3602 3747 5.507985 GCAGGTTGTCTGAAAAATGCTAAGT 60.508 40.000 10.33 0.00 46.18 2.24
3603 3748 4.919754 GCAGGTTGTCTGAAAAATGCTAAG 59.080 41.667 10.33 0.00 46.18 2.18
3604 3749 4.556501 CGCAGGTTGTCTGAAAAATGCTAA 60.557 41.667 13.89 0.00 46.18 3.09
3605 3750 3.058293 CGCAGGTTGTCTGAAAAATGCTA 60.058 43.478 13.89 0.00 46.18 3.49
3606 3751 2.287788 CGCAGGTTGTCTGAAAAATGCT 60.288 45.455 13.89 0.00 46.18 3.79
3607 3752 2.053627 CGCAGGTTGTCTGAAAAATGC 58.946 47.619 8.33 8.33 46.18 3.56
3608 3753 3.300009 GTCGCAGGTTGTCTGAAAAATG 58.700 45.455 0.00 0.00 46.18 2.32
3609 3754 2.032030 CGTCGCAGGTTGTCTGAAAAAT 60.032 45.455 0.00 0.00 46.18 1.82
3610 3755 1.329292 CGTCGCAGGTTGTCTGAAAAA 59.671 47.619 0.00 0.00 46.18 1.94
3611 3756 0.934496 CGTCGCAGGTTGTCTGAAAA 59.066 50.000 0.00 0.00 46.18 2.29
3612 3757 1.495584 GCGTCGCAGGTTGTCTGAAA 61.496 55.000 13.44 0.00 46.18 2.69
3613 3758 1.954146 GCGTCGCAGGTTGTCTGAA 60.954 57.895 13.44 0.00 46.18 3.02
3614 3759 2.355837 GCGTCGCAGGTTGTCTGA 60.356 61.111 13.44 0.00 46.18 3.27
3615 3760 2.356313 AGCGTCGCAGGTTGTCTG 60.356 61.111 21.09 0.00 46.03 3.51
3616 3761 2.356313 CAGCGTCGCAGGTTGTCT 60.356 61.111 21.09 0.00 0.00 3.41
3617 3762 4.077188 GCAGCGTCGCAGGTTGTC 62.077 66.667 21.09 1.85 0.00 3.18
3626 3771 3.567478 TACACACCTGGCAGCGTCG 62.567 63.158 9.56 4.98 0.00 5.12
3627 3772 0.673644 ATTACACACCTGGCAGCGTC 60.674 55.000 9.56 0.00 0.00 5.19
3628 3773 0.955428 CATTACACACCTGGCAGCGT 60.955 55.000 9.56 5.41 0.00 5.07
3629 3774 1.796151 CATTACACACCTGGCAGCG 59.204 57.895 9.56 4.69 0.00 5.18
3630 3775 1.508088 GCATTACACACCTGGCAGC 59.492 57.895 9.56 0.00 0.00 5.25
3631 3776 0.322816 AGGCATTACACACCTGGCAG 60.323 55.000 7.75 7.75 37.87 4.85
3632 3777 0.608856 CAGGCATTACACACCTGGCA 60.609 55.000 0.19 0.00 45.97 4.92
3633 3778 2.183409 CAGGCATTACACACCTGGC 58.817 57.895 0.19 0.00 45.97 4.85
3636 3781 2.637872 ACTGTACAGGCATTACACACCT 59.362 45.455 26.12 0.00 0.00 4.00
3637 3782 2.742053 CACTGTACAGGCATTACACACC 59.258 50.000 26.12 0.00 0.00 4.16
3638 3783 3.399330 ACACTGTACAGGCATTACACAC 58.601 45.455 26.12 0.00 0.00 3.82
3639 3784 3.762407 ACACTGTACAGGCATTACACA 57.238 42.857 26.12 0.00 0.00 3.72
3640 3785 5.642063 ACATTACACTGTACAGGCATTACAC 59.358 40.000 26.12 0.00 0.00 2.90
3641 3786 5.641636 CACATTACACTGTACAGGCATTACA 59.358 40.000 26.12 4.53 0.00 2.41
3642 3787 5.872617 TCACATTACACTGTACAGGCATTAC 59.127 40.000 26.12 0.00 0.00 1.89
3643 3788 5.872617 GTCACATTACACTGTACAGGCATTA 59.127 40.000 26.12 8.99 0.00 1.90
3644 3789 4.695455 GTCACATTACACTGTACAGGCATT 59.305 41.667 26.12 9.93 0.00 3.56
3645 3790 4.253685 GTCACATTACACTGTACAGGCAT 58.746 43.478 26.12 13.41 0.00 4.40
3646 3791 3.659786 GTCACATTACACTGTACAGGCA 58.340 45.455 26.12 8.40 0.00 4.75
3647 3792 2.666508 CGTCACATTACACTGTACAGGC 59.333 50.000 26.12 0.00 0.00 4.85
3648 3793 2.666508 GCGTCACATTACACTGTACAGG 59.333 50.000 26.12 16.94 0.00 4.00
3649 3794 2.666508 GGCGTCACATTACACTGTACAG 59.333 50.000 21.44 21.44 0.00 2.74
3650 3795 2.297880 AGGCGTCACATTACACTGTACA 59.702 45.455 0.00 0.00 0.00 2.90
3651 3796 2.955614 AGGCGTCACATTACACTGTAC 58.044 47.619 0.00 0.00 0.00 2.90
3652 3797 4.219070 AGTTAGGCGTCACATTACACTGTA 59.781 41.667 0.00 0.00 0.00 2.74
3653 3798 3.006537 AGTTAGGCGTCACATTACACTGT 59.993 43.478 0.00 0.00 0.00 3.55
3654 3799 3.367932 CAGTTAGGCGTCACATTACACTG 59.632 47.826 0.00 0.00 0.00 3.66
3655 3800 3.006537 ACAGTTAGGCGTCACATTACACT 59.993 43.478 0.00 0.00 0.00 3.55
3656 3801 3.323243 ACAGTTAGGCGTCACATTACAC 58.677 45.455 0.00 0.00 0.00 2.90
3657 3802 3.006003 TGACAGTTAGGCGTCACATTACA 59.994 43.478 0.00 0.00 37.23 2.41
3658 3803 3.581755 TGACAGTTAGGCGTCACATTAC 58.418 45.455 0.00 0.00 37.23 1.89
3659 3804 3.368013 CCTGACAGTTAGGCGTCACATTA 60.368 47.826 0.00 0.00 37.23 1.90
3660 3805 2.612972 CCTGACAGTTAGGCGTCACATT 60.613 50.000 0.00 0.00 37.23 2.71
3661 3806 1.066858 CCTGACAGTTAGGCGTCACAT 60.067 52.381 0.00 0.00 37.23 3.21
3662 3807 0.317160 CCTGACAGTTAGGCGTCACA 59.683 55.000 0.00 0.00 37.23 3.58
3663 3808 3.123674 CCTGACAGTTAGGCGTCAC 57.876 57.895 0.00 0.00 37.23 3.67
3669 3814 3.895232 ATGTAGTGCCTGACAGTTAGG 57.105 47.619 7.03 7.03 38.39 2.69
3670 3815 6.313905 CCTTTTATGTAGTGCCTGACAGTTAG 59.686 42.308 0.93 0.00 32.79 2.34
3671 3816 6.014070 TCCTTTTATGTAGTGCCTGACAGTTA 60.014 38.462 0.93 0.00 32.79 2.24
3672 3817 5.003804 CCTTTTATGTAGTGCCTGACAGTT 58.996 41.667 0.93 0.00 32.79 3.16
3673 3818 4.286032 TCCTTTTATGTAGTGCCTGACAGT 59.714 41.667 0.93 0.00 35.57 3.55
3674 3819 4.832248 TCCTTTTATGTAGTGCCTGACAG 58.168 43.478 0.00 0.00 0.00 3.51
3675 3820 4.901197 TCCTTTTATGTAGTGCCTGACA 57.099 40.909 0.00 0.00 0.00 3.58
3676 3821 5.428253 TGATCCTTTTATGTAGTGCCTGAC 58.572 41.667 0.00 0.00 0.00 3.51
3677 3822 5.396772 CCTGATCCTTTTATGTAGTGCCTGA 60.397 44.000 0.00 0.00 0.00 3.86
3678 3823 4.818546 CCTGATCCTTTTATGTAGTGCCTG 59.181 45.833 0.00 0.00 0.00 4.85
3679 3824 4.475016 ACCTGATCCTTTTATGTAGTGCCT 59.525 41.667 0.00 0.00 0.00 4.75
3680 3825 4.576463 CACCTGATCCTTTTATGTAGTGCC 59.424 45.833 0.00 0.00 0.00 5.01
3681 3826 4.576463 CCACCTGATCCTTTTATGTAGTGC 59.424 45.833 0.00 0.00 0.00 4.40
3682 3827 5.989477 TCCACCTGATCCTTTTATGTAGTG 58.011 41.667 0.00 0.00 0.00 2.74
3683 3828 6.386927 TCATCCACCTGATCCTTTTATGTAGT 59.613 38.462 0.00 0.00 0.00 2.73
3684 3829 6.830912 TCATCCACCTGATCCTTTTATGTAG 58.169 40.000 0.00 0.00 0.00 2.74
3685 3830 6.823286 TCATCCACCTGATCCTTTTATGTA 57.177 37.500 0.00 0.00 0.00 2.29
3686 3831 5.715439 TCATCCACCTGATCCTTTTATGT 57.285 39.130 0.00 0.00 0.00 2.29
3687 3832 7.592885 AATTCATCCACCTGATCCTTTTATG 57.407 36.000 0.00 0.00 0.00 1.90
3688 3833 8.613922 AAAATTCATCCACCTGATCCTTTTAT 57.386 30.769 0.00 0.00 0.00 1.40
3689 3834 8.434589 AAAAATTCATCCACCTGATCCTTTTA 57.565 30.769 0.00 0.00 0.00 1.52
3690 3835 6.940430 AAAATTCATCCACCTGATCCTTTT 57.060 33.333 0.00 0.00 0.00 2.27
3691 3836 6.940430 AAAAATTCATCCACCTGATCCTTT 57.060 33.333 0.00 0.00 0.00 3.11
3711 3856 6.813649 TCACAAAATGAACCATTGACGAAAAA 59.186 30.769 0.00 0.00 34.04 1.94
3712 3857 6.333416 TCACAAAATGAACCATTGACGAAAA 58.667 32.000 0.00 0.00 34.04 2.29
3713 3858 5.895928 TCACAAAATGAACCATTGACGAAA 58.104 33.333 0.00 0.00 34.04 3.46
3714 3859 5.506686 TCACAAAATGAACCATTGACGAA 57.493 34.783 0.00 0.00 34.04 3.85
3715 3860 5.703978 ATCACAAAATGAACCATTGACGA 57.296 34.783 0.00 0.00 41.93 4.20
3716 3861 7.541783 ACAATATCACAAAATGAACCATTGACG 59.458 33.333 12.44 0.00 41.93 4.35
3717 3862 8.761575 ACAATATCACAAAATGAACCATTGAC 57.238 30.769 12.44 0.00 41.93 3.18
3718 3863 9.775854 AAACAATATCACAAAATGAACCATTGA 57.224 25.926 12.44 0.00 41.93 2.57
3720 3865 8.924691 CGAAACAATATCACAAAATGAACCATT 58.075 29.630 0.00 0.00 41.93 3.16
3721 3866 8.087750 ACGAAACAATATCACAAAATGAACCAT 58.912 29.630 0.00 0.00 41.93 3.55
3722 3867 7.429633 ACGAAACAATATCACAAAATGAACCA 58.570 30.769 0.00 0.00 41.93 3.67
3723 3868 7.867445 ACGAAACAATATCACAAAATGAACC 57.133 32.000 0.00 0.00 41.93 3.62
3726 3871 9.952188 TGTAAACGAAACAATATCACAAAATGA 57.048 25.926 0.00 0.00 43.13 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.