Multiple sequence alignment - TraesCS3A01G274800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G274800 chr3A 100.000 3759 0 0 1 3759 503839845 503836087 0.000000e+00 6942
1 TraesCS3A01G274800 chr3A 87.080 565 55 16 1 557 601619400 601618846 1.150000e-174 623
2 TraesCS3A01G274800 chr3D 93.123 2443 116 23 797 3212 380596964 380594547 0.000000e+00 3533
3 TraesCS3A01G274800 chr3D 79.939 329 36 10 3281 3583 380594040 380593716 8.180000e-52 215
4 TraesCS3A01G274800 chr3B 93.480 997 43 8 859 1839 495819226 495818236 0.000000e+00 1461
5 TraesCS3A01G274800 chr3B 91.429 980 53 18 2251 3212 495817692 495816726 0.000000e+00 1315
6 TraesCS3A01G274800 chr3B 87.032 802 48 17 1 793 567391376 567392130 0.000000e+00 854
7 TraesCS3A01G274800 chr3B 93.929 280 15 1 1984 2263 495817989 495817712 4.490000e-114 422
8 TraesCS3A01G274800 chr3B 95.868 121 5 0 1868 1988 495818237 495818117 2.960000e-46 196
9 TraesCS3A01G274800 chr5A 91.955 808 22 12 1 788 301368133 301368917 0.000000e+00 1092
10 TraesCS3A01G274800 chr5A 89.651 802 46 24 1 795 273445610 273446381 0.000000e+00 987
11 TraesCS3A01G274800 chr5A 81.592 402 45 21 11 397 273445795 273446182 4.720000e-79 305
12 TraesCS3A01G274800 chr2B 89.111 799 40 15 1 795 109132144 109132899 0.000000e+00 950
13 TraesCS3A01G274800 chr2B 87.531 818 37 17 1 795 109767353 109768128 0.000000e+00 885
14 TraesCS3A01G274800 chrUn 88.417 777 51 24 22 789 460780951 460780205 0.000000e+00 900
15 TraesCS3A01G274800 chr7B 87.653 818 35 15 1 796 683033392 683034165 0.000000e+00 891
16 TraesCS3A01G274800 chr5B 88.060 536 29 14 267 795 710203989 710203482 1.490000e-168 603
17 TraesCS3A01G274800 chr5B 87.949 473 47 9 13 480 710204203 710203736 1.970000e-152 549
18 TraesCS3A01G274800 chr5B 86.100 518 41 20 1 495 710204525 710204016 2.570000e-146 529
19 TraesCS3A01G274800 chr5B 83.784 555 55 23 13 542 710204358 710203814 9.380000e-136 494
20 TraesCS3A01G274800 chr5B 81.538 390 44 20 13 388 710204048 710203673 2.840000e-76 296
21 TraesCS3A01G274800 chr2A 87.023 524 37 13 1 499 724037521 724037004 2.540000e-156 562
22 TraesCS3A01G274800 chr7D 81.784 538 78 17 220 744 217861509 217862039 2.070000e-117 433


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G274800 chr3A 503836087 503839845 3758 True 6942.0 6942 100.0000 1 3759 1 chr3A.!!$R1 3758
1 TraesCS3A01G274800 chr3A 601618846 601619400 554 True 623.0 623 87.0800 1 557 1 chr3A.!!$R2 556
2 TraesCS3A01G274800 chr3D 380593716 380596964 3248 True 1874.0 3533 86.5310 797 3583 2 chr3D.!!$R1 2786
3 TraesCS3A01G274800 chr3B 567391376 567392130 754 False 854.0 854 87.0320 1 793 1 chr3B.!!$F1 792
4 TraesCS3A01G274800 chr3B 495816726 495819226 2500 True 848.5 1461 93.6765 859 3212 4 chr3B.!!$R1 2353
5 TraesCS3A01G274800 chr5A 301368133 301368917 784 False 1092.0 1092 91.9550 1 788 1 chr5A.!!$F1 787
6 TraesCS3A01G274800 chr5A 273445610 273446381 771 False 646.0 987 85.6215 1 795 2 chr5A.!!$F2 794
7 TraesCS3A01G274800 chr2B 109132144 109132899 755 False 950.0 950 89.1110 1 795 1 chr2B.!!$F1 794
8 TraesCS3A01G274800 chr2B 109767353 109768128 775 False 885.0 885 87.5310 1 795 1 chr2B.!!$F2 794
9 TraesCS3A01G274800 chrUn 460780205 460780951 746 True 900.0 900 88.4170 22 789 1 chrUn.!!$R1 767
10 TraesCS3A01G274800 chr7B 683033392 683034165 773 False 891.0 891 87.6530 1 796 1 chr7B.!!$F1 795
11 TraesCS3A01G274800 chr5B 710203482 710204525 1043 True 494.2 603 85.4862 1 795 5 chr5B.!!$R1 794
12 TraesCS3A01G274800 chr2A 724037004 724037521 517 True 562.0 562 87.0230 1 499 1 chr2A.!!$R1 498
13 TraesCS3A01G274800 chr7D 217861509 217862039 530 False 433.0 433 81.7840 220 744 1 chr7D.!!$F1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 1340 0.257328 TTCCTTGTTGTGCCCTGACA 59.743 50.0 0.0 0.0 0.0 3.58 F
841 1341 0.465460 TCCTTGTTGTGCCCTGACAC 60.465 55.0 0.0 0.0 41.1 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2517 3219 0.248498 CTCATCCATTTGCAGCTGCG 60.248 55.0 32.11 18.34 45.83 5.18 R
2793 3495 1.040646 ACAGAAGTGACGAGCAAGGA 58.959 50.0 0.00 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 325 7.922505 TTCGATGAACATTTTTGAATTTCGT 57.077 28.000 0.00 0.00 0.00 3.85
174 351 8.472683 TGAACATTTTTGAATTTCGTTGAACT 57.527 26.923 0.00 0.00 0.00 3.01
328 701 5.783298 ACGTTTTTGAATTTCGATGAACG 57.217 34.783 21.82 21.82 42.81 3.95
329 702 5.267776 ACGTTTTTGAATTTCGATGAACGT 58.732 33.333 22.64 22.64 44.50 3.99
330 703 5.740099 ACGTTTTTGAATTTCGATGAACGTT 59.260 32.000 22.64 0.00 46.31 3.99
331 704 6.251801 ACGTTTTTGAATTTCGATGAACGTTT 59.748 30.769 22.64 11.10 46.31 3.60
332 705 7.108005 CGTTTTTGAATTTCGATGAACGTTTT 58.892 30.769 18.40 0.00 43.13 2.43
333 706 7.629085 CGTTTTTGAATTTCGATGAACGTTTTT 59.371 29.630 18.40 0.00 43.13 1.94
334 707 8.711727 GTTTTTGAATTTCGATGAACGTTTTTG 58.288 29.630 0.46 0.00 43.13 2.44
335 708 7.742019 TTTGAATTTCGATGAACGTTTTTGA 57.258 28.000 0.46 0.00 43.13 2.69
336 709 7.742019 TTGAATTTCGATGAACGTTTTTGAA 57.258 28.000 0.46 6.51 43.13 2.69
337 710 7.922505 TGAATTTCGATGAACGTTTTTGAAT 57.077 28.000 0.46 0.00 43.13 2.57
338 711 8.346476 TGAATTTCGATGAACGTTTTTGAATT 57.654 26.923 0.46 5.28 43.13 2.17
339 712 8.812329 TGAATTTCGATGAACGTTTTTGAATTT 58.188 25.926 0.46 11.01 43.13 1.82
340 713 9.289999 GAATTTCGATGAACGTTTTTGAATTTC 57.710 29.630 20.07 20.07 43.13 2.17
341 714 6.413645 TTCGATGAACGTTTTTGAATTTCG 57.586 33.333 0.46 3.41 43.13 3.46
342 715 5.739387 TCGATGAACGTTTTTGAATTTCGA 58.261 33.333 0.46 5.63 43.13 3.71
343 716 6.367421 TCGATGAACGTTTTTGAATTTCGAT 58.633 32.000 0.46 0.00 43.13 3.59
344 717 6.302078 TCGATGAACGTTTTTGAATTTCGATG 59.698 34.615 0.46 0.00 43.13 3.84
345 718 6.302078 CGATGAACGTTTTTGAATTTCGATGA 59.698 34.615 0.46 0.00 37.22 2.92
346 719 7.149208 CGATGAACGTTTTTGAATTTCGATGAA 60.149 33.333 0.46 0.00 37.22 2.57
347 720 7.144007 TGAACGTTTTTGAATTTCGATGAAC 57.856 32.000 0.46 0.00 0.00 3.18
831 1331 2.433436 GCCGTCCTATTTCCTTGTTGT 58.567 47.619 0.00 0.00 0.00 3.32
832 1332 2.161609 GCCGTCCTATTTCCTTGTTGTG 59.838 50.000 0.00 0.00 0.00 3.33
833 1333 2.161609 CCGTCCTATTTCCTTGTTGTGC 59.838 50.000 0.00 0.00 0.00 4.57
834 1334 2.161609 CGTCCTATTTCCTTGTTGTGCC 59.838 50.000 0.00 0.00 0.00 5.01
835 1335 2.492088 GTCCTATTTCCTTGTTGTGCCC 59.508 50.000 0.00 0.00 0.00 5.36
836 1336 2.378547 TCCTATTTCCTTGTTGTGCCCT 59.621 45.455 0.00 0.00 0.00 5.19
837 1337 2.493278 CCTATTTCCTTGTTGTGCCCTG 59.507 50.000 0.00 0.00 0.00 4.45
838 1338 2.380064 ATTTCCTTGTTGTGCCCTGA 57.620 45.000 0.00 0.00 0.00 3.86
839 1339 1.398692 TTTCCTTGTTGTGCCCTGAC 58.601 50.000 0.00 0.00 0.00 3.51
840 1340 0.257328 TTCCTTGTTGTGCCCTGACA 59.743 50.000 0.00 0.00 0.00 3.58
841 1341 0.465460 TCCTTGTTGTGCCCTGACAC 60.465 55.000 0.00 0.00 41.10 3.67
842 1342 1.648720 CTTGTTGTGCCCTGACACG 59.351 57.895 0.00 0.00 43.74 4.49
843 1343 1.785041 CTTGTTGTGCCCTGACACGG 61.785 60.000 0.00 0.00 43.74 4.94
953 1480 4.202451 CCCCTCAAATCAAAACCCAAACAT 60.202 41.667 0.00 0.00 0.00 2.71
1419 1958 3.330853 GTGCGATCGCCGGTGATC 61.331 66.667 37.32 37.32 41.10 2.92
1557 2096 6.655078 ACTAAACAGCCATGAAAGTTTGAT 57.345 33.333 15.15 0.00 35.90 2.57
1637 2176 0.884704 TGCGAGAGTTTGGGAAGTGC 60.885 55.000 0.00 0.00 0.00 4.40
1717 2256 1.351017 TCAGGTAGCCCCTTTTCACTG 59.649 52.381 0.00 0.00 42.73 3.66
1747 2286 4.724602 TGTCGCGAGCTGCCTGTC 62.725 66.667 10.24 0.00 42.08 3.51
1751 2290 2.866028 GCGAGCTGCCTGTCTTTG 59.134 61.111 0.00 0.00 37.76 2.77
1755 2294 1.597742 GAGCTGCCTGTCTTTGTTCA 58.402 50.000 0.00 0.00 0.00 3.18
1796 2335 4.112716 TCGTAACTGCATCGACCATAAA 57.887 40.909 0.00 0.00 0.00 1.40
1798 2337 4.565166 TCGTAACTGCATCGACCATAAAAG 59.435 41.667 0.00 0.00 0.00 2.27
1828 2368 8.359875 TGGTTAATTGATTCAAAGGCTAATCA 57.640 30.769 2.68 7.01 39.66 2.57
1951 2491 5.132502 CCCAATATTGCAGTGTCCTATCAA 58.867 41.667 10.11 0.00 0.00 2.57
1957 2497 5.885230 TTGCAGTGTCCTATCAATTTCAG 57.115 39.130 0.00 0.00 0.00 3.02
1965 2505 8.812972 AGTGTCCTATCAATTTCAGTTAGTACA 58.187 33.333 0.00 0.00 0.00 2.90
2025 2697 9.778993 GACATGAATGTAGTACTAAACTTACGA 57.221 33.333 3.61 0.00 41.95 3.43
2110 2782 8.996651 ATAGTCTTTCCTTTCCTTTCTGAAAA 57.003 30.769 4.18 0.00 34.06 2.29
2131 2803 3.187700 AGCAGCGGTTTATTTCTAGACG 58.812 45.455 0.00 0.00 0.00 4.18
2136 2808 5.121142 CAGCGGTTTATTTCTAGACGGAAAA 59.879 40.000 0.00 0.00 38.46 2.29
2189 2861 6.825944 ATAAGTTCAAAAAGCTCTTCCCTC 57.174 37.500 0.00 0.00 0.00 4.30
2197 2869 1.037030 AGCTCTTCCCTCGCTGAGAG 61.037 60.000 1.01 1.01 46.44 3.20
2347 3049 7.617041 ACTTCTATGTAGATTTTCTTGTGGC 57.383 36.000 0.00 0.00 31.40 5.01
2355 3057 4.210331 AGATTTTCTTGTGGCTGTTCTGT 58.790 39.130 0.00 0.00 0.00 3.41
2356 3058 4.646492 AGATTTTCTTGTGGCTGTTCTGTT 59.354 37.500 0.00 0.00 0.00 3.16
2517 3219 4.953579 TGGGGTTAAAATTACTGATCCAGC 59.046 41.667 0.00 0.00 34.37 4.85
2560 3262 9.539825 GAGAAGATGAGTGAGAGCAATTATAAA 57.460 33.333 0.00 0.00 0.00 1.40
2563 3265 7.800092 AGATGAGTGAGAGCAATTATAAAGGT 58.200 34.615 0.00 0.00 0.00 3.50
2596 3298 5.300752 TCCTTGCCTTCGAAATCATCTATC 58.699 41.667 0.00 0.00 0.00 2.08
2666 3368 2.825532 GACCCAAAAGCTGGCAGAAATA 59.174 45.455 20.86 0.00 44.90 1.40
2683 3385 6.543831 GCAGAAATATTAACAGAGACATGGGT 59.456 38.462 0.00 0.00 0.00 4.51
2727 3429 3.164268 TGCCAGCAAAATCAGTATTGGT 58.836 40.909 0.00 0.00 37.73 3.67
2777 3479 4.160642 TGATATGCAGTGCTGGAGATTT 57.839 40.909 17.60 0.00 33.06 2.17
2780 3482 5.528690 TGATATGCAGTGCTGGAGATTTTAC 59.471 40.000 17.60 0.00 33.06 2.01
2781 3483 3.138884 TGCAGTGCTGGAGATTTTACA 57.861 42.857 17.60 0.00 0.00 2.41
2784 3486 4.156556 TGCAGTGCTGGAGATTTTACAATC 59.843 41.667 17.60 0.00 39.45 2.67
2805 3507 2.631160 TTTTCCTTCCTTGCTCGTCA 57.369 45.000 0.00 0.00 0.00 4.35
2816 3518 0.315251 TGCTCGTCACTTCTGTGGAG 59.685 55.000 0.00 0.00 43.94 3.86
2818 3520 1.540267 GCTCGTCACTTCTGTGGAGTA 59.460 52.381 0.00 0.00 43.94 2.59
2819 3521 2.030185 GCTCGTCACTTCTGTGGAGTAA 60.030 50.000 0.00 0.00 43.94 2.24
2820 3522 3.367498 GCTCGTCACTTCTGTGGAGTAAT 60.367 47.826 0.00 0.00 43.94 1.89
2866 3568 5.651530 TCTGCGAGTTCCTTATTTCTAGTG 58.348 41.667 0.00 0.00 0.00 2.74
2867 3569 5.185249 TCTGCGAGTTCCTTATTTCTAGTGT 59.815 40.000 0.00 0.00 0.00 3.55
2868 3570 5.408356 TGCGAGTTCCTTATTTCTAGTGTC 58.592 41.667 0.00 0.00 0.00 3.67
2869 3571 4.804665 GCGAGTTCCTTATTTCTAGTGTCC 59.195 45.833 0.00 0.00 0.00 4.02
2871 3573 5.163683 CGAGTTCCTTATTTCTAGTGTCCGA 60.164 44.000 0.00 0.00 0.00 4.55
2872 3574 6.600882 AGTTCCTTATTTCTAGTGTCCGAA 57.399 37.500 0.00 0.00 0.00 4.30
2873 3575 6.631962 AGTTCCTTATTTCTAGTGTCCGAAG 58.368 40.000 0.00 0.00 0.00 3.79
2874 3576 6.436532 AGTTCCTTATTTCTAGTGTCCGAAGA 59.563 38.462 0.00 0.00 0.00 2.87
2893 3604 5.581126 AAGATGTTGTTTTTCACTGCAGA 57.419 34.783 23.35 0.00 0.00 4.26
2921 3632 1.203287 GTTCTTTTCCCCAGCATCTGC 59.797 52.381 0.00 0.00 42.49 4.26
2934 3645 1.808343 GCATCTGCGCATATCCATTCA 59.192 47.619 12.24 0.00 0.00 2.57
2952 3663 4.314740 TTCATGGGTTTTGTTGTGTAGC 57.685 40.909 0.00 0.00 0.00 3.58
2976 3687 0.111748 GCAATGTGAAACGTTTGCGC 60.112 50.000 20.10 15.94 45.42 6.09
2981 3692 2.331451 GAAACGTTTGCGCTGGCT 59.669 55.556 20.10 0.00 42.83 4.75
2988 3699 1.129624 CGTTTGCGCTGGCTATGTAAA 59.870 47.619 9.73 0.00 40.82 2.01
2989 3700 2.223249 CGTTTGCGCTGGCTATGTAAAT 60.223 45.455 9.73 0.00 40.82 1.40
2990 3701 3.108144 GTTTGCGCTGGCTATGTAAATG 58.892 45.455 9.73 0.00 40.82 2.32
2991 3702 2.036958 TGCGCTGGCTATGTAAATGT 57.963 45.000 9.73 0.00 40.82 2.71
2992 3703 2.364632 TGCGCTGGCTATGTAAATGTT 58.635 42.857 9.73 0.00 40.82 2.71
2993 3704 2.097304 TGCGCTGGCTATGTAAATGTTG 59.903 45.455 9.73 0.00 40.82 3.33
2994 3705 2.541588 GCGCTGGCTATGTAAATGTTGG 60.542 50.000 0.00 0.00 35.83 3.77
2995 3706 2.942376 CGCTGGCTATGTAAATGTTGGA 59.058 45.455 0.00 0.00 0.00 3.53
2996 3707 3.565482 CGCTGGCTATGTAAATGTTGGAT 59.435 43.478 0.00 0.00 0.00 3.41
2997 3708 4.036734 CGCTGGCTATGTAAATGTTGGATT 59.963 41.667 0.00 0.00 0.00 3.01
2998 3709 5.284079 GCTGGCTATGTAAATGTTGGATTG 58.716 41.667 0.00 0.00 0.00 2.67
2999 3710 5.737063 GCTGGCTATGTAAATGTTGGATTGG 60.737 44.000 0.00 0.00 0.00 3.16
3000 3711 4.099266 TGGCTATGTAAATGTTGGATTGGC 59.901 41.667 0.00 0.00 0.00 4.52
3001 3712 4.342092 GGCTATGTAAATGTTGGATTGGCT 59.658 41.667 0.00 0.00 0.00 4.75
3002 3713 5.534654 GGCTATGTAAATGTTGGATTGGCTA 59.465 40.000 0.00 0.00 0.00 3.93
3003 3714 6.209391 GGCTATGTAAATGTTGGATTGGCTAT 59.791 38.462 0.00 0.00 0.00 2.97
3004 3715 7.086376 GCTATGTAAATGTTGGATTGGCTATG 58.914 38.462 0.00 0.00 0.00 2.23
3005 3716 7.255590 GCTATGTAAATGTTGGATTGGCTATGT 60.256 37.037 0.00 0.00 0.00 2.29
3006 3717 9.283768 CTATGTAAATGTTGGATTGGCTATGTA 57.716 33.333 0.00 0.00 0.00 2.29
3027 3738 6.465948 TGTAATACCTTTCTAAAGTGGCGAA 58.534 36.000 2.03 0.00 34.20 4.70
3040 3753 1.534163 GTGGCGAAGTGTAAAAGGGTC 59.466 52.381 0.00 0.00 0.00 4.46
3059 3775 6.357367 AGGGTCTTGATTATACATGGTGTTC 58.643 40.000 0.00 0.00 0.00 3.18
3126 3842 4.274705 TGCTGTTTTATTCGTTCTGCTGAA 59.725 37.500 1.33 1.33 0.00 3.02
3148 3864 6.486657 TGAACAAGATAGCAAAGTTAGCACTT 59.513 34.615 0.00 0.00 45.89 3.16
3149 3865 6.246420 ACAAGATAGCAAAGTTAGCACTTG 57.754 37.500 0.00 0.00 42.89 3.16
3150 3866 4.954092 AGATAGCAAAGTTAGCACTTGC 57.046 40.909 7.92 7.92 42.89 4.01
3176 3893 4.397420 TGGTTCATGCAGTTATTCTGTGT 58.603 39.130 0.00 0.00 45.23 3.72
3199 3918 6.210584 TGTCATCACATTACTACTCAGTCCAA 59.789 38.462 0.00 0.00 36.14 3.53
3209 3928 8.934023 TTACTACTCAGTCCAAAATTCCAATT 57.066 30.769 0.00 0.00 36.14 2.32
3215 3983 9.308000 ACTCAGTCCAAAATTCCAATTTATGTA 57.692 29.630 0.00 0.00 37.62 2.29
3216 3984 9.573133 CTCAGTCCAAAATTCCAATTTATGTAC 57.427 33.333 0.00 0.00 37.62 2.90
3228 3996 6.601613 TCCAATTTATGTACATGTCCTTGGAC 59.398 38.462 24.85 12.54 35.83 4.02
3229 3997 6.183360 CCAATTTATGTACATGTCCTTGGACC 60.183 42.308 23.35 2.27 33.99 4.46
3230 3998 5.506730 TTTATGTACATGTCCTTGGACCA 57.493 39.130 18.81 7.58 28.61 4.02
3235 4003 2.586425 ACATGTCCTTGGACCAGTTTG 58.414 47.619 16.23 8.99 0.00 2.93
3238 4006 1.896660 TCCTTGGACCAGTTTGCGC 60.897 57.895 0.00 0.00 0.00 6.09
3253 4021 1.317613 TGCGCTGTCCAAATTTCTGT 58.682 45.000 9.73 0.00 0.00 3.41
3254 4022 1.001487 TGCGCTGTCCAAATTTCTGTG 60.001 47.619 9.73 0.00 0.00 3.66
3258 4026 4.111916 CGCTGTCCAAATTTCTGTGTTTT 58.888 39.130 0.00 0.00 0.00 2.43
3264 4032 5.580297 GTCCAAATTTCTGTGTTTTCTGCAA 59.420 36.000 0.00 0.00 0.00 4.08
3265 4033 5.580297 TCCAAATTTCTGTGTTTTCTGCAAC 59.420 36.000 0.00 0.00 0.00 4.17
3297 4454 8.068892 TGTTGTCCAAATTTAAACTACCTGTT 57.931 30.769 11.41 0.00 41.29 3.16
3300 4457 9.629878 TTGTCCAAATTTAAACTACCTGTTCTA 57.370 29.630 0.00 0.00 38.03 2.10
3330 4489 7.109501 TCATGAATTTGTAATCCGGAAAGAGA 58.890 34.615 9.01 0.00 0.00 3.10
3374 4533 0.710017 GCAGTGCACGCTTTTTATGC 59.290 50.000 21.16 14.95 0.00 3.14
3375 4534 1.929926 GCAGTGCACGCTTTTTATGCA 60.930 47.619 21.16 0.00 32.79 3.96
3387 4546 7.273381 CACGCTTTTTATGCAGCTACTTATTTT 59.727 33.333 0.00 0.00 33.52 1.82
3388 4547 8.455682 ACGCTTTTTATGCAGCTACTTATTTTA 58.544 29.630 0.00 0.00 33.52 1.52
3432 4591 9.903682 GTGATATCATAAATTCATGGTTCCTTG 57.096 33.333 9.02 0.00 0.00 3.61
3433 4592 9.081204 TGATATCATAAATTCATGGTTCCTTGG 57.919 33.333 0.00 0.00 0.00 3.61
3434 4593 9.082313 GATATCATAAATTCATGGTTCCTTGGT 57.918 33.333 0.00 0.00 0.00 3.67
3437 4596 8.236585 TCATAAATTCATGGTTCCTTGGTATG 57.763 34.615 0.00 7.86 0.00 2.39
3442 4601 8.837099 AATTCATGGTTCCTTGGTATGAATAA 57.163 30.769 10.16 0.00 43.71 1.40
3448 4607 8.837099 TGGTTCCTTGGTATGAATAATCATTT 57.163 30.769 0.00 0.00 43.89 2.32
3451 4610 9.533253 GTTCCTTGGTATGAATAATCATTTTGG 57.467 33.333 0.00 0.00 43.89 3.28
3500 4682 5.376625 ACAATTTCTTTGGTAGCTCTCACA 58.623 37.500 0.00 0.00 39.80 3.58
3513 4695 4.455606 AGCTCTCACAATTAATAGGTGGC 58.544 43.478 16.02 12.67 33.45 5.01
3521 4703 5.529430 CACAATTAATAGGTGGCGTGGATAA 59.471 40.000 10.76 0.00 0.00 1.75
3547 4729 3.912496 TGTCATGGGACCTTATGTCAG 57.088 47.619 0.00 0.00 46.38 3.51
3559 4741 6.183360 GGACCTTATGTCAGTAAATGTTGCTC 60.183 42.308 0.00 0.00 46.38 4.26
3560 4742 5.351465 ACCTTATGTCAGTAAATGTTGCTCG 59.649 40.000 0.00 0.00 0.00 5.03
3561 4743 5.351465 CCTTATGTCAGTAAATGTTGCTCGT 59.649 40.000 0.00 0.00 0.00 4.18
3574 4756 5.717038 TGTTGCTCGTAATATGTCACATG 57.283 39.130 0.00 0.00 0.00 3.21
3580 4762 7.882179 TGCTCGTAATATGTCACATGTACTAT 58.118 34.615 0.00 0.00 0.00 2.12
3583 4765 9.893305 CTCGTAATATGTCACATGTACTATTGA 57.107 33.333 0.00 0.00 0.00 2.57
3590 4772 8.621532 ATGTCACATGTACTATTGAAAAGTGT 57.378 30.769 0.00 0.00 0.00 3.55
3591 4773 9.719355 ATGTCACATGTACTATTGAAAAGTGTA 57.281 29.630 0.00 0.00 0.00 2.90
3592 4774 8.984764 TGTCACATGTACTATTGAAAAGTGTAC 58.015 33.333 0.00 0.00 38.26 2.90
3593 4775 8.984764 GTCACATGTACTATTGAAAAGTGTACA 58.015 33.333 0.00 0.00 45.43 2.90
3606 4788 8.556213 TGAAAAGTGTACATAAATACCTCACC 57.444 34.615 0.00 0.00 0.00 4.02
3607 4789 8.158132 TGAAAAGTGTACATAAATACCTCACCA 58.842 33.333 0.00 0.00 0.00 4.17
3608 4790 8.927675 AAAAGTGTACATAAATACCTCACCAA 57.072 30.769 0.00 0.00 0.00 3.67
3609 4791 9.528489 AAAAGTGTACATAAATACCTCACCAAT 57.472 29.630 0.00 0.00 0.00 3.16
3610 4792 8.732746 AAGTGTACATAAATACCTCACCAATC 57.267 34.615 0.00 0.00 0.00 2.67
3611 4793 8.090788 AGTGTACATAAATACCTCACCAATCT 57.909 34.615 0.00 0.00 0.00 2.40
3612 4794 8.204836 AGTGTACATAAATACCTCACCAATCTC 58.795 37.037 0.00 0.00 0.00 2.75
3613 4795 7.985184 GTGTACATAAATACCTCACCAATCTCA 59.015 37.037 0.00 0.00 0.00 3.27
3614 4796 8.713971 TGTACATAAATACCTCACCAATCTCAT 58.286 33.333 0.00 0.00 0.00 2.90
3615 4797 8.993121 GTACATAAATACCTCACCAATCTCATG 58.007 37.037 0.00 0.00 0.00 3.07
3616 4798 7.577303 ACATAAATACCTCACCAATCTCATGT 58.423 34.615 0.00 0.00 0.00 3.21
3617 4799 7.716998 ACATAAATACCTCACCAATCTCATGTC 59.283 37.037 0.00 0.00 0.00 3.06
3618 4800 5.965033 AATACCTCACCAATCTCATGTCT 57.035 39.130 0.00 0.00 0.00 3.41
3619 4801 5.965033 ATACCTCACCAATCTCATGTCTT 57.035 39.130 0.00 0.00 0.00 3.01
3620 4802 3.947868 ACCTCACCAATCTCATGTCTTG 58.052 45.455 0.00 0.00 0.00 3.02
3621 4803 3.328931 ACCTCACCAATCTCATGTCTTGT 59.671 43.478 0.00 0.00 0.00 3.16
3622 4804 3.937706 CCTCACCAATCTCATGTCTTGTC 59.062 47.826 0.00 0.00 0.00 3.18
3623 4805 3.937706 CTCACCAATCTCATGTCTTGTCC 59.062 47.826 0.00 0.00 0.00 4.02
3624 4806 3.584406 TCACCAATCTCATGTCTTGTCCT 59.416 43.478 0.00 0.00 0.00 3.85
3625 4807 3.937706 CACCAATCTCATGTCTTGTCCTC 59.062 47.826 0.00 0.00 0.00 3.71
3626 4808 3.843027 ACCAATCTCATGTCTTGTCCTCT 59.157 43.478 0.00 0.00 0.00 3.69
3627 4809 4.190001 CCAATCTCATGTCTTGTCCTCTG 58.810 47.826 0.00 0.00 0.00 3.35
3628 4810 4.190001 CAATCTCATGTCTTGTCCTCTGG 58.810 47.826 0.00 0.00 0.00 3.86
3629 4811 1.552337 TCTCATGTCTTGTCCTCTGGC 59.448 52.381 0.00 0.00 0.00 4.85
3630 4812 1.554160 CTCATGTCTTGTCCTCTGGCT 59.446 52.381 0.00 0.00 0.00 4.75
3631 4813 1.552337 TCATGTCTTGTCCTCTGGCTC 59.448 52.381 0.00 0.00 0.00 4.70
3632 4814 0.908198 ATGTCTTGTCCTCTGGCTCC 59.092 55.000 0.00 0.00 0.00 4.70
3633 4815 0.178921 TGTCTTGTCCTCTGGCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
3634 4816 0.980423 GTCTTGTCCTCTGGCTCCTT 59.020 55.000 0.00 0.00 0.00 3.36
3635 4817 0.979665 TCTTGTCCTCTGGCTCCTTG 59.020 55.000 0.00 0.00 0.00 3.61
3636 4818 0.035630 CTTGTCCTCTGGCTCCTTGG 60.036 60.000 0.00 0.00 0.00 3.61
3637 4819 0.768221 TTGTCCTCTGGCTCCTTGGT 60.768 55.000 0.00 0.00 0.00 3.67
3638 4820 1.298014 GTCCTCTGGCTCCTTGGTG 59.702 63.158 0.00 0.00 0.00 4.17
3639 4821 1.152030 TCCTCTGGCTCCTTGGTGT 60.152 57.895 0.00 0.00 0.00 4.16
3640 4822 1.194781 TCCTCTGGCTCCTTGGTGTC 61.195 60.000 0.00 0.00 0.00 3.67
3641 4823 1.483595 CCTCTGGCTCCTTGGTGTCA 61.484 60.000 0.00 0.00 0.00 3.58
3642 4824 0.617413 CTCTGGCTCCTTGGTGTCAT 59.383 55.000 0.00 0.00 0.00 3.06
3643 4825 0.615331 TCTGGCTCCTTGGTGTCATC 59.385 55.000 0.00 0.00 0.00 2.92
3644 4826 0.617413 CTGGCTCCTTGGTGTCATCT 59.383 55.000 0.00 0.00 0.00 2.90
3645 4827 0.325933 TGGCTCCTTGGTGTCATCTG 59.674 55.000 0.00 0.00 0.00 2.90
3646 4828 0.393537 GGCTCCTTGGTGTCATCTGG 60.394 60.000 0.00 0.00 0.00 3.86
3647 4829 0.393537 GCTCCTTGGTGTCATCTGGG 60.394 60.000 0.00 0.00 0.00 4.45
3648 4830 1.279496 CTCCTTGGTGTCATCTGGGA 58.721 55.000 0.00 0.00 0.00 4.37
3649 4831 1.209019 CTCCTTGGTGTCATCTGGGAG 59.791 57.143 9.43 9.43 33.98 4.30
3650 4832 0.393537 CCTTGGTGTCATCTGGGAGC 60.394 60.000 0.00 0.00 0.00 4.70
3651 4833 0.742281 CTTGGTGTCATCTGGGAGCG 60.742 60.000 0.00 0.00 0.00 5.03
3652 4834 1.480212 TTGGTGTCATCTGGGAGCGT 61.480 55.000 0.00 0.00 0.00 5.07
3653 4835 1.153549 GGTGTCATCTGGGAGCGTC 60.154 63.158 0.00 0.00 0.00 5.19
3654 4836 1.517257 GTGTCATCTGGGAGCGTCG 60.517 63.158 0.00 0.00 0.00 5.12
3655 4837 1.677633 TGTCATCTGGGAGCGTCGA 60.678 57.895 0.00 0.00 0.00 4.20
3656 4838 1.248101 TGTCATCTGGGAGCGTCGAA 61.248 55.000 0.00 0.00 0.00 3.71
3657 4839 0.526524 GTCATCTGGGAGCGTCGAAG 60.527 60.000 0.00 0.00 0.00 3.79
3658 4840 1.880340 CATCTGGGAGCGTCGAAGC 60.880 63.158 15.94 15.94 37.41 3.86
3667 4849 1.641577 AGCGTCGAAGCTTATGTTCC 58.358 50.000 20.54 0.00 46.80 3.62
3668 4850 1.067142 AGCGTCGAAGCTTATGTTCCA 60.067 47.619 20.54 0.00 46.80 3.53
3669 4851 1.730064 GCGTCGAAGCTTATGTTCCAA 59.270 47.619 16.42 0.00 0.00 3.53
3670 4852 2.222819 GCGTCGAAGCTTATGTTCCAAG 60.223 50.000 16.42 0.00 0.00 3.61
3671 4853 2.348666 CGTCGAAGCTTATGTTCCAAGG 59.651 50.000 0.00 0.00 0.00 3.61
3672 4854 3.596214 GTCGAAGCTTATGTTCCAAGGA 58.404 45.455 0.00 0.00 0.00 3.36
3673 4855 3.371285 GTCGAAGCTTATGTTCCAAGGAC 59.629 47.826 0.00 0.00 0.00 3.85
3674 4856 2.678336 CGAAGCTTATGTTCCAAGGACC 59.322 50.000 0.00 0.00 0.00 4.46
3675 4857 3.619979 CGAAGCTTATGTTCCAAGGACCT 60.620 47.826 0.00 0.00 0.00 3.85
3676 4858 3.356529 AGCTTATGTTCCAAGGACCTG 57.643 47.619 0.00 0.00 0.00 4.00
3677 4859 2.025887 AGCTTATGTTCCAAGGACCTGG 60.026 50.000 0.00 0.00 37.87 4.45
3678 4860 2.369394 CTTATGTTCCAAGGACCTGGC 58.631 52.381 0.00 0.00 36.32 4.85
3679 4861 0.623723 TATGTTCCAAGGACCTGGCC 59.376 55.000 0.00 0.00 36.32 5.36
3680 4862 1.434513 ATGTTCCAAGGACCTGGCCA 61.435 55.000 4.71 4.71 36.32 5.36
3681 4863 1.303643 GTTCCAAGGACCTGGCCAG 60.304 63.158 26.87 26.87 36.32 4.85
3682 4864 1.463214 TTCCAAGGACCTGGCCAGA 60.463 57.895 34.91 8.84 36.32 3.86
3683 4865 1.779061 TTCCAAGGACCTGGCCAGAC 61.779 60.000 34.91 24.92 36.32 3.51
3684 4866 2.352805 CAAGGACCTGGCCAGACC 59.647 66.667 34.91 31.52 39.84 3.85
3685 4867 2.208349 AAGGACCTGGCCAGACCT 59.792 61.111 34.91 33.02 40.22 3.85
3686 4868 2.227036 AAGGACCTGGCCAGACCTG 61.227 63.158 35.18 23.14 40.22 4.00
3695 4877 2.347490 CCAGACCTGGGGTTGTCG 59.653 66.667 8.17 0.00 46.81 4.35
3696 4878 2.516888 CCAGACCTGGGGTTGTCGT 61.517 63.158 8.17 0.00 46.81 4.34
3697 4879 1.004918 CAGACCTGGGGTTGTCGTC 60.005 63.158 0.00 0.00 35.25 4.20
3698 4880 2.214920 AGACCTGGGGTTGTCGTCC 61.215 63.158 0.00 0.00 35.25 4.79
3699 4881 2.446994 ACCTGGGGTTGTCGTCCA 60.447 61.111 0.00 0.00 27.29 4.02
3700 4882 2.047213 GACCTGGGGTTGTCGTCCAA 62.047 60.000 0.00 0.00 35.25 3.53
3711 4893 4.336889 TTGTCGTCCAACTCTCTTCATT 57.663 40.909 0.00 0.00 0.00 2.57
3712 4894 3.653344 TGTCGTCCAACTCTCTTCATTG 58.347 45.455 0.00 0.00 0.00 2.82
3713 4895 2.413453 GTCGTCCAACTCTCTTCATTGC 59.587 50.000 0.00 0.00 0.00 3.56
3714 4896 1.734465 CGTCCAACTCTCTTCATTGCC 59.266 52.381 0.00 0.00 0.00 4.52
3715 4897 2.613977 CGTCCAACTCTCTTCATTGCCT 60.614 50.000 0.00 0.00 0.00 4.75
3716 4898 2.746362 GTCCAACTCTCTTCATTGCCTG 59.254 50.000 0.00 0.00 0.00 4.85
3717 4899 1.471684 CCAACTCTCTTCATTGCCTGC 59.528 52.381 0.00 0.00 0.00 4.85
3718 4900 2.434428 CAACTCTCTTCATTGCCTGCT 58.566 47.619 0.00 0.00 0.00 4.24
3719 4901 2.818432 CAACTCTCTTCATTGCCTGCTT 59.182 45.455 0.00 0.00 0.00 3.91
3720 4902 2.709213 ACTCTCTTCATTGCCTGCTTC 58.291 47.619 0.00 0.00 0.00 3.86
3721 4903 2.305343 ACTCTCTTCATTGCCTGCTTCT 59.695 45.455 0.00 0.00 0.00 2.85
3722 4904 2.937799 CTCTCTTCATTGCCTGCTTCTC 59.062 50.000 0.00 0.00 0.00 2.87
3723 4905 2.015587 CTCTTCATTGCCTGCTTCTCC 58.984 52.381 0.00 0.00 0.00 3.71
3724 4906 0.731417 CTTCATTGCCTGCTTCTCCG 59.269 55.000 0.00 0.00 0.00 4.63
3725 4907 0.677731 TTCATTGCCTGCTTCTCCGG 60.678 55.000 0.00 0.00 0.00 5.14
3726 4908 1.078214 CATTGCCTGCTTCTCCGGA 60.078 57.895 2.93 2.93 0.00 5.14
3727 4909 1.094073 CATTGCCTGCTTCTCCGGAG 61.094 60.000 26.32 26.32 0.00 4.63
3728 4910 1.557269 ATTGCCTGCTTCTCCGGAGT 61.557 55.000 30.17 4.62 0.00 3.85
3729 4911 2.125350 GCCTGCTTCTCCGGAGTG 60.125 66.667 30.17 23.41 0.00 3.51
3730 4912 2.581354 CCTGCTTCTCCGGAGTGG 59.419 66.667 30.17 22.97 40.09 4.00
3731 4913 2.125350 CTGCTTCTCCGGAGTGGC 60.125 66.667 30.17 30.07 37.80 5.01
3732 4914 3.997064 CTGCTTCTCCGGAGTGGCG 62.997 68.421 30.17 22.84 37.80 5.69
3733 4915 3.760035 GCTTCTCCGGAGTGGCGA 61.760 66.667 30.17 8.94 37.80 5.54
3734 4916 3.082579 GCTTCTCCGGAGTGGCGAT 62.083 63.158 30.17 0.00 37.80 4.58
3735 4917 1.517832 CTTCTCCGGAGTGGCGATT 59.482 57.895 30.17 0.00 37.80 3.34
3736 4918 0.108138 CTTCTCCGGAGTGGCGATTT 60.108 55.000 30.17 0.00 37.80 2.17
3737 4919 0.391130 TTCTCCGGAGTGGCGATTTG 60.391 55.000 30.17 2.24 37.80 2.32
3738 4920 1.079127 CTCCGGAGTGGCGATTTGT 60.079 57.895 24.04 0.00 37.80 2.83
3739 4921 0.673644 CTCCGGAGTGGCGATTTGTT 60.674 55.000 24.04 0.00 37.80 2.83
3740 4922 0.250553 TCCGGAGTGGCGATTTGTTT 60.251 50.000 0.00 0.00 37.80 2.83
3741 4923 0.596082 CCGGAGTGGCGATTTGTTTT 59.404 50.000 0.00 0.00 0.00 2.43
3742 4924 1.401018 CCGGAGTGGCGATTTGTTTTC 60.401 52.381 0.00 0.00 0.00 2.29
3743 4925 1.401018 CGGAGTGGCGATTTGTTTTCC 60.401 52.381 0.00 0.00 0.00 3.13
3744 4926 1.611491 GGAGTGGCGATTTGTTTTCCA 59.389 47.619 0.00 0.00 0.00 3.53
3745 4927 2.351738 GGAGTGGCGATTTGTTTTCCAG 60.352 50.000 0.00 0.00 0.00 3.86
3746 4928 2.552315 GAGTGGCGATTTGTTTTCCAGA 59.448 45.455 0.00 0.00 0.00 3.86
3747 4929 3.157087 AGTGGCGATTTGTTTTCCAGAT 58.843 40.909 0.00 0.00 0.00 2.90
3748 4930 3.573967 AGTGGCGATTTGTTTTCCAGATT 59.426 39.130 0.00 0.00 0.00 2.40
3749 4931 3.674753 GTGGCGATTTGTTTTCCAGATTG 59.325 43.478 0.00 0.00 0.00 2.67
3750 4932 3.320541 TGGCGATTTGTTTTCCAGATTGT 59.679 39.130 0.00 0.00 0.00 2.71
3751 4933 4.202202 TGGCGATTTGTTTTCCAGATTGTT 60.202 37.500 0.00 0.00 0.00 2.83
3752 4934 5.010112 TGGCGATTTGTTTTCCAGATTGTTA 59.990 36.000 0.00 0.00 0.00 2.41
3753 4935 6.099341 GGCGATTTGTTTTCCAGATTGTTAT 58.901 36.000 0.00 0.00 0.00 1.89
3754 4936 6.253512 GGCGATTTGTTTTCCAGATTGTTATC 59.746 38.462 0.00 0.00 0.00 1.75
3755 4937 6.806249 GCGATTTGTTTTCCAGATTGTTATCA 59.194 34.615 0.00 0.00 32.95 2.15
3756 4938 7.489113 GCGATTTGTTTTCCAGATTGTTATCAT 59.511 33.333 0.00 0.00 32.95 2.45
3757 4939 9.013490 CGATTTGTTTTCCAGATTGTTATCATC 57.987 33.333 0.00 0.00 32.95 2.92
3758 4940 8.915871 ATTTGTTTTCCAGATTGTTATCATCG 57.084 30.769 0.00 0.00 32.95 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
652 1152 1.199229 CGCTCGATCAACTCAGCTCG 61.199 60.000 0.00 0.00 0.00 5.03
840 1340 0.738412 GCCTAATACACACGTGCCGT 60.738 55.000 17.22 15.77 42.36 5.68
841 1341 1.426041 GGCCTAATACACACGTGCCG 61.426 60.000 17.22 9.95 0.00 5.69
842 1342 0.107848 AGGCCTAATACACACGTGCC 60.108 55.000 17.22 7.63 37.68 5.01
843 1343 1.006832 CAGGCCTAATACACACGTGC 58.993 55.000 17.22 0.00 0.00 5.34
844 1344 1.006832 GCAGGCCTAATACACACGTG 58.993 55.000 15.48 15.48 0.00 4.49
845 1345 0.107848 GGCAGGCCTAATACACACGT 60.108 55.000 3.98 0.00 0.00 4.49
846 1346 0.814010 GGGCAGGCCTAATACACACG 60.814 60.000 3.98 0.00 36.10 4.49
847 1347 0.465642 GGGGCAGGCCTAATACACAC 60.466 60.000 13.81 0.00 36.10 3.82
848 1348 1.919771 GGGGCAGGCCTAATACACA 59.080 57.895 13.81 0.00 36.10 3.72
849 1349 1.227853 CGGGGCAGGCCTAATACAC 60.228 63.158 13.81 0.00 36.10 2.90
850 1350 1.276140 AACGGGGCAGGCCTAATACA 61.276 55.000 13.81 0.00 36.10 2.29
851 1351 0.106868 AAACGGGGCAGGCCTAATAC 60.107 55.000 13.81 0.00 36.10 1.89
852 1352 1.418637 CTAAACGGGGCAGGCCTAATA 59.581 52.381 13.81 0.99 36.10 0.98
853 1353 0.182775 CTAAACGGGGCAGGCCTAAT 59.817 55.000 13.81 0.00 36.10 1.73
854 1354 1.605453 CTAAACGGGGCAGGCCTAA 59.395 57.895 13.81 0.00 36.10 2.69
855 1355 2.372074 CCTAAACGGGGCAGGCCTA 61.372 63.158 13.81 0.00 36.10 3.93
856 1356 3.728373 CCTAAACGGGGCAGGCCT 61.728 66.667 13.81 0.00 36.10 5.19
911 1438 5.866207 AGGGGTCCGTAATTGAATATTCTC 58.134 41.667 16.24 0.00 0.00 2.87
918 1445 3.791953 TTTGAGGGGTCCGTAATTGAA 57.208 42.857 0.00 0.00 0.00 2.69
953 1480 0.387622 CGCGACGAGACAGGGTTTTA 60.388 55.000 0.00 0.00 0.00 1.52
1082 1609 2.043953 GGTGGGAAGGGATGGCAC 60.044 66.667 0.00 0.00 0.00 5.01
1315 1854 2.262915 CTCCACGAGCCAGTCACC 59.737 66.667 0.00 0.00 0.00 4.02
1435 1974 3.083349 TGATGGAGCCGTCCTGGG 61.083 66.667 6.29 0.00 44.30 4.45
1505 2044 2.377628 GAAGCGTCACACACCCTCCA 62.378 60.000 0.00 0.00 0.00 3.86
1533 2072 6.463995 TCAAACTTTCATGGCTGTTTAGTT 57.536 33.333 9.34 0.00 32.29 2.24
1557 2096 6.591062 ACGAAGCGAAAAATTACATACCACTA 59.409 34.615 0.00 0.00 0.00 2.74
1637 2176 2.478709 GCAGTGTCTCAGTATCACTCCG 60.479 54.545 0.00 0.00 39.89 4.63
1747 2286 9.003658 AGGTTGACTTATGAGTTATGAACAAAG 57.996 33.333 0.00 0.00 35.88 2.77
1751 2290 8.169268 CGAAAGGTTGACTTATGAGTTATGAAC 58.831 37.037 0.00 0.00 38.85 3.18
1755 2294 9.148104 GTTACGAAAGGTTGACTTATGAGTTAT 57.852 33.333 0.00 0.00 38.85 1.89
1796 2335 8.040727 GCCTTTGAATCAATTAACCATAACCTT 58.959 33.333 0.00 0.00 0.00 3.50
1798 2337 7.555965 AGCCTTTGAATCAATTAACCATAACC 58.444 34.615 0.00 0.00 0.00 2.85
1809 2348 9.198475 AGAAAGATGATTAGCCTTTGAATCAAT 57.802 29.630 0.00 0.00 43.39 2.57
1827 2367 8.669243 AGACGAAAAATAAAGGCTAGAAAGATG 58.331 33.333 0.00 0.00 0.00 2.90
1828 2368 8.794335 AGACGAAAAATAAAGGCTAGAAAGAT 57.206 30.769 0.00 0.00 0.00 2.40
1916 2456 3.555586 GCAATATTGGGGCATGATTGGTC 60.556 47.826 17.02 0.00 0.00 4.02
1965 2505 9.227777 GTGACTAAGTAGACCAAAAACCATATT 57.772 33.333 0.00 0.00 0.00 1.28
1978 2518 9.509855 CATGTCTAAAGATGTGACTAAGTAGAC 57.490 37.037 0.00 0.00 37.69 2.59
2025 2697 3.391296 TCCAAGTAAAACAGCCTGACTCT 59.609 43.478 0.00 0.00 0.00 3.24
2089 2761 5.656416 TGCTTTTCAGAAAGGAAAGGAAAGA 59.344 36.000 9.16 0.00 39.80 2.52
2110 2782 3.187700 CGTCTAGAAATAAACCGCTGCT 58.812 45.455 0.00 0.00 0.00 4.24
2136 2808 9.492973 AACTATTTGCTGCTGTTTTATGATTTT 57.507 25.926 0.00 0.00 0.00 1.82
2169 2841 3.142174 CGAGGGAAGAGCTTTTTGAACT 58.858 45.455 0.00 0.00 0.00 3.01
2517 3219 0.248498 CTCATCCATTTGCAGCTGCG 60.248 55.000 32.11 18.34 45.83 5.18
2523 3225 4.638865 CACTCATCTTCTCATCCATTTGCA 59.361 41.667 0.00 0.00 0.00 4.08
2560 3262 1.970640 GGCAAGGAAACCATGAAACCT 59.029 47.619 0.00 0.00 0.00 3.50
2563 3265 2.295909 CGAAGGCAAGGAAACCATGAAA 59.704 45.455 0.00 0.00 0.00 2.69
2666 3368 5.630121 TGAACAACCCATGTCTCTGTTAAT 58.370 37.500 0.00 0.00 42.99 1.40
2727 3429 6.928492 GCCAAAAATCAAGTCCATAGTTTTCA 59.072 34.615 0.00 0.00 0.00 2.69
2777 3479 6.293955 CGAGCAAGGAAGGAAAAAGATTGTAA 60.294 38.462 0.00 0.00 0.00 2.41
2780 3482 4.022849 ACGAGCAAGGAAGGAAAAAGATTG 60.023 41.667 0.00 0.00 0.00 2.67
2781 3483 4.145052 ACGAGCAAGGAAGGAAAAAGATT 58.855 39.130 0.00 0.00 0.00 2.40
2784 3486 2.878406 TGACGAGCAAGGAAGGAAAAAG 59.122 45.455 0.00 0.00 0.00 2.27
2791 3493 2.064762 CAGAAGTGACGAGCAAGGAAG 58.935 52.381 0.00 0.00 0.00 3.46
2792 3494 1.412710 ACAGAAGTGACGAGCAAGGAA 59.587 47.619 0.00 0.00 0.00 3.36
2793 3495 1.040646 ACAGAAGTGACGAGCAAGGA 58.959 50.000 0.00 0.00 0.00 3.36
2866 3568 4.970003 CAGTGAAAAACAACATCTTCGGAC 59.030 41.667 0.00 0.00 0.00 4.79
2867 3569 4.497340 GCAGTGAAAAACAACATCTTCGGA 60.497 41.667 0.00 0.00 0.00 4.55
2868 3570 3.730715 GCAGTGAAAAACAACATCTTCGG 59.269 43.478 0.00 0.00 0.00 4.30
2869 3571 4.350346 TGCAGTGAAAAACAACATCTTCG 58.650 39.130 0.00 0.00 0.00 3.79
2871 3573 5.581126 TCTGCAGTGAAAAACAACATCTT 57.419 34.783 14.67 0.00 0.00 2.40
2872 3574 5.508489 CCATCTGCAGTGAAAAACAACATCT 60.508 40.000 14.67 0.00 0.00 2.90
2873 3575 4.682860 CCATCTGCAGTGAAAAACAACATC 59.317 41.667 14.67 0.00 0.00 3.06
2874 3576 4.341806 TCCATCTGCAGTGAAAAACAACAT 59.658 37.500 14.67 0.00 0.00 2.71
2893 3604 3.308473 GCTGGGGAAAAGAACTACTCCAT 60.308 47.826 0.00 0.00 0.00 3.41
2929 3640 4.685628 GCTACACAACAAAACCCATGAATG 59.314 41.667 0.00 0.00 0.00 2.67
2934 3645 4.953940 AATGCTACACAACAAAACCCAT 57.046 36.364 0.00 0.00 0.00 4.00
2941 3652 4.507021 CACATTGCAAATGCTACACAACAA 59.493 37.500 1.71 0.00 42.66 2.83
2952 3663 3.961240 GCAAACGTTTCACATTGCAAATG 59.039 39.130 11.37 5.39 45.61 2.32
2976 3687 5.737063 GCCAATCCAACATTTACATAGCCAG 60.737 44.000 0.00 0.00 0.00 4.85
2981 3692 9.634021 TTACATAGCCAATCCAACATTTACATA 57.366 29.630 0.00 0.00 0.00 2.29
2988 3699 6.852404 AGGTATTACATAGCCAATCCAACAT 58.148 36.000 0.00 0.00 33.87 2.71
2989 3700 6.260700 AGGTATTACATAGCCAATCCAACA 57.739 37.500 0.00 0.00 33.87 3.33
2990 3701 7.502561 AGAAAGGTATTACATAGCCAATCCAAC 59.497 37.037 0.00 0.00 33.87 3.77
2991 3702 7.582719 AGAAAGGTATTACATAGCCAATCCAA 58.417 34.615 0.00 0.00 33.87 3.53
2992 3703 7.149202 AGAAAGGTATTACATAGCCAATCCA 57.851 36.000 0.00 0.00 33.87 3.41
2993 3704 9.569122 TTTAGAAAGGTATTACATAGCCAATCC 57.431 33.333 0.00 0.00 33.87 3.01
2996 3707 9.391006 CACTTTAGAAAGGTATTACATAGCCAA 57.609 33.333 6.94 0.00 40.31 4.52
2997 3708 7.990886 CCACTTTAGAAAGGTATTACATAGCCA 59.009 37.037 6.94 0.00 40.31 4.75
2998 3709 7.041303 GCCACTTTAGAAAGGTATTACATAGCC 60.041 40.741 6.94 0.00 40.31 3.93
2999 3710 7.307219 CGCCACTTTAGAAAGGTATTACATAGC 60.307 40.741 6.94 0.00 40.31 2.97
3000 3711 7.924412 TCGCCACTTTAGAAAGGTATTACATAG 59.076 37.037 6.94 0.00 40.31 2.23
3001 3712 7.784037 TCGCCACTTTAGAAAGGTATTACATA 58.216 34.615 6.94 0.00 40.31 2.29
3002 3713 6.646267 TCGCCACTTTAGAAAGGTATTACAT 58.354 36.000 6.94 0.00 40.31 2.29
3003 3714 6.040209 TCGCCACTTTAGAAAGGTATTACA 57.960 37.500 6.94 0.00 40.31 2.41
3004 3715 6.592994 ACTTCGCCACTTTAGAAAGGTATTAC 59.407 38.462 6.94 0.00 40.31 1.89
3005 3716 6.592607 CACTTCGCCACTTTAGAAAGGTATTA 59.407 38.462 6.94 0.00 40.31 0.98
3006 3717 5.411669 CACTTCGCCACTTTAGAAAGGTATT 59.588 40.000 6.94 0.00 40.31 1.89
3027 3738 9.396022 CATGTATAATCAAGACCCTTTTACACT 57.604 33.333 0.00 0.00 0.00 3.55
3040 3753 9.254133 CTGAGTAGAACACCATGTATAATCAAG 57.746 37.037 0.00 0.00 31.28 3.02
3059 3775 4.125703 GCCATCATTTCTGGTCTGAGTAG 58.874 47.826 0.00 0.00 36.10 2.57
3103 3819 3.812609 TCAGCAGAACGAATAAAACAGCA 59.187 39.130 0.00 0.00 0.00 4.41
3126 3842 5.335191 GCAAGTGCTAACTTTGCTATCTTGT 60.335 40.000 18.28 0.00 44.47 3.16
3128 3844 5.302357 GCAAGTGCTAACTTTGCTATCTT 57.698 39.130 0.00 0.00 44.47 2.40
3148 3864 4.870123 ATAACTGCATGAACCAAAAGCA 57.130 36.364 0.00 0.00 0.00 3.91
3149 3865 5.346822 CAGAATAACTGCATGAACCAAAAGC 59.653 40.000 0.00 0.00 39.86 3.51
3150 3866 6.939551 CAGAATAACTGCATGAACCAAAAG 57.060 37.500 0.00 0.00 39.86 2.27
3176 3893 6.850752 TTGGACTGAGTAGTAATGTGATGA 57.149 37.500 0.00 0.00 37.25 2.92
3193 3912 9.874205 CATGTACATAAATTGGAATTTTGGACT 57.126 29.630 8.32 6.41 39.24 3.85
3199 3918 9.874205 CAAGGACATGTACATAAATTGGAATTT 57.126 29.630 11.55 3.02 41.24 1.82
3209 3928 4.534500 ACTGGTCCAAGGACATGTACATAA 59.466 41.667 20.03 0.00 46.20 1.90
3215 3983 2.586425 CAAACTGGTCCAAGGACATGT 58.414 47.619 20.03 14.28 46.20 3.21
3216 3984 1.270550 GCAAACTGGTCCAAGGACATG 59.729 52.381 20.03 13.70 46.20 3.21
3228 3996 0.314935 ATTTGGACAGCGCAAACTGG 59.685 50.000 11.47 0.00 42.21 4.00
3229 3997 2.138596 AATTTGGACAGCGCAAACTG 57.861 45.000 11.47 0.29 43.59 3.16
3230 3998 2.362077 AGAAATTTGGACAGCGCAAACT 59.638 40.909 11.47 0.00 0.00 2.66
3235 4003 1.001378 ACACAGAAATTTGGACAGCGC 60.001 47.619 0.00 0.00 0.00 5.92
3238 4006 5.232838 GCAGAAAACACAGAAATTTGGACAG 59.767 40.000 0.00 0.00 0.00 3.51
3272 4040 7.648039 ACAGGTAGTTTAAATTTGGACAACA 57.352 32.000 0.00 0.00 0.00 3.33
3274 4042 8.528044 AGAACAGGTAGTTTAAATTTGGACAA 57.472 30.769 0.00 0.00 41.51 3.18
3276 4044 9.498176 TCTAGAACAGGTAGTTTAAATTTGGAC 57.502 33.333 0.00 0.00 41.51 4.02
3286 4054 9.965902 ATTCATGAAATCTAGAACAGGTAGTTT 57.034 29.630 13.09 0.00 41.51 2.66
3288 4056 9.965902 AAATTCATGAAATCTAGAACAGGTAGT 57.034 29.630 13.09 0.00 0.00 2.73
3297 4454 9.056005 CCGGATTACAAATTCATGAAATCTAGA 57.944 33.333 13.09 0.00 0.00 2.43
3300 4457 7.880160 TCCGGATTACAAATTCATGAAATCT 57.120 32.000 13.09 0.00 0.00 2.40
3337 4496 6.597280 TGCACTGCTATATTTGACATGTGTAA 59.403 34.615 1.15 0.00 0.00 2.41
3345 4504 2.609459 AGCGTGCACTGCTATATTTGAC 59.391 45.455 26.95 2.16 41.87 3.18
3403 4562 9.028284 GGAACCATGAATTTATGATATCACCAT 57.972 33.333 7.78 2.71 0.00 3.55
3404 4563 8.226810 AGGAACCATGAATTTATGATATCACCA 58.773 33.333 7.78 0.00 0.00 4.17
3416 4575 7.738437 ATTCATACCAAGGAACCATGAATTT 57.262 32.000 0.00 0.00 41.31 1.82
3417 4576 8.837099 TTATTCATACCAAGGAACCATGAATT 57.163 30.769 16.03 0.00 41.31 2.17
3418 4577 9.082313 GATTATTCATACCAAGGAACCATGAAT 57.918 33.333 15.49 15.49 44.41 2.57
3475 4634 6.321181 TGTGAGAGCTACCAAAGAAATTGTTT 59.679 34.615 0.00 0.00 37.32 2.83
3476 4635 5.827797 TGTGAGAGCTACCAAAGAAATTGTT 59.172 36.000 0.00 0.00 37.32 2.83
3477 4636 5.376625 TGTGAGAGCTACCAAAGAAATTGT 58.623 37.500 0.00 0.00 37.32 2.71
3479 4638 7.530426 AATTGTGAGAGCTACCAAAGAAATT 57.470 32.000 0.00 0.00 0.00 1.82
3480 4639 8.635765 TTAATTGTGAGAGCTACCAAAGAAAT 57.364 30.769 0.00 0.00 0.00 2.17
3484 4666 7.770897 ACCTATTAATTGTGAGAGCTACCAAAG 59.229 37.037 0.00 0.00 0.00 2.77
3486 4668 7.047891 CACCTATTAATTGTGAGAGCTACCAA 58.952 38.462 10.69 0.00 31.66 3.67
3500 4682 6.539173 TGATTATCCACGCCACCTATTAATT 58.461 36.000 0.00 0.00 0.00 1.40
3513 4695 4.821260 TCCCATGACATTTGATTATCCACG 59.179 41.667 0.00 0.00 0.00 4.94
3521 4703 5.769835 ACATAAGGTCCCATGACATTTGAT 58.230 37.500 7.85 0.00 42.46 2.57
3547 4729 7.680982 TGTGACATATTACGAGCAACATTTAC 58.319 34.615 0.00 0.00 0.00 2.01
3580 4762 9.005777 GGTGAGGTATTTATGTACACTTTTCAA 57.994 33.333 0.00 0.00 0.00 2.69
3583 4765 8.927675 TTGGTGAGGTATTTATGTACACTTTT 57.072 30.769 0.00 0.00 0.00 2.27
3584 4766 9.174166 GATTGGTGAGGTATTTATGTACACTTT 57.826 33.333 0.00 0.00 0.00 2.66
3585 4767 8.548877 AGATTGGTGAGGTATTTATGTACACTT 58.451 33.333 0.00 0.00 0.00 3.16
3586 4768 8.090788 AGATTGGTGAGGTATTTATGTACACT 57.909 34.615 0.00 0.00 0.00 3.55
3587 4769 7.985184 TGAGATTGGTGAGGTATTTATGTACAC 59.015 37.037 0.00 0.00 0.00 2.90
3588 4770 8.084985 TGAGATTGGTGAGGTATTTATGTACA 57.915 34.615 0.00 0.00 0.00 2.90
3589 4771 8.993121 CATGAGATTGGTGAGGTATTTATGTAC 58.007 37.037 0.00 0.00 0.00 2.90
3590 4772 8.713971 ACATGAGATTGGTGAGGTATTTATGTA 58.286 33.333 0.00 0.00 0.00 2.29
3591 4773 7.577303 ACATGAGATTGGTGAGGTATTTATGT 58.423 34.615 0.00 0.00 0.00 2.29
3592 4774 7.935755 AGACATGAGATTGGTGAGGTATTTATG 59.064 37.037 0.00 0.00 0.00 1.90
3593 4775 8.038862 AGACATGAGATTGGTGAGGTATTTAT 57.961 34.615 0.00 0.00 0.00 1.40
3594 4776 7.437713 AGACATGAGATTGGTGAGGTATTTA 57.562 36.000 0.00 0.00 0.00 1.40
3595 4777 6.319048 AGACATGAGATTGGTGAGGTATTT 57.681 37.500 0.00 0.00 0.00 1.40
3596 4778 5.965033 AGACATGAGATTGGTGAGGTATT 57.035 39.130 0.00 0.00 0.00 1.89
3597 4779 5.190528 ACAAGACATGAGATTGGTGAGGTAT 59.809 40.000 0.00 0.00 0.00 2.73
3598 4780 4.532126 ACAAGACATGAGATTGGTGAGGTA 59.468 41.667 0.00 0.00 0.00 3.08
3599 4781 3.328931 ACAAGACATGAGATTGGTGAGGT 59.671 43.478 0.00 0.00 0.00 3.85
3600 4782 3.937706 GACAAGACATGAGATTGGTGAGG 59.062 47.826 0.00 0.00 0.00 3.86
3601 4783 3.937706 GGACAAGACATGAGATTGGTGAG 59.062 47.826 0.00 0.00 0.00 3.51
3602 4784 3.584406 AGGACAAGACATGAGATTGGTGA 59.416 43.478 0.00 0.00 0.00 4.02
3603 4785 3.937706 GAGGACAAGACATGAGATTGGTG 59.062 47.826 0.00 0.00 0.00 4.17
3604 4786 3.843027 AGAGGACAAGACATGAGATTGGT 59.157 43.478 0.00 0.00 0.00 3.67
3605 4787 4.190001 CAGAGGACAAGACATGAGATTGG 58.810 47.826 0.00 0.00 0.00 3.16
3606 4788 4.190001 CCAGAGGACAAGACATGAGATTG 58.810 47.826 0.00 3.74 0.00 2.67
3607 4789 3.370315 GCCAGAGGACAAGACATGAGATT 60.370 47.826 0.00 0.00 0.00 2.40
3608 4790 2.170187 GCCAGAGGACAAGACATGAGAT 59.830 50.000 0.00 0.00 0.00 2.75
3609 4791 1.552337 GCCAGAGGACAAGACATGAGA 59.448 52.381 0.00 0.00 0.00 3.27
3610 4792 1.554160 AGCCAGAGGACAAGACATGAG 59.446 52.381 0.00 0.00 0.00 2.90
3611 4793 1.552337 GAGCCAGAGGACAAGACATGA 59.448 52.381 0.00 0.00 0.00 3.07
3612 4794 1.406614 GGAGCCAGAGGACAAGACATG 60.407 57.143 0.00 0.00 0.00 3.21
3613 4795 0.908198 GGAGCCAGAGGACAAGACAT 59.092 55.000 0.00 0.00 0.00 3.06
3614 4796 0.178921 AGGAGCCAGAGGACAAGACA 60.179 55.000 0.00 0.00 0.00 3.41
3615 4797 0.980423 AAGGAGCCAGAGGACAAGAC 59.020 55.000 0.00 0.00 0.00 3.01
3616 4798 0.979665 CAAGGAGCCAGAGGACAAGA 59.020 55.000 0.00 0.00 0.00 3.02
3617 4799 0.035630 CCAAGGAGCCAGAGGACAAG 60.036 60.000 0.00 0.00 0.00 3.16
3618 4800 0.768221 ACCAAGGAGCCAGAGGACAA 60.768 55.000 0.00 0.00 0.00 3.18
3619 4801 1.152030 ACCAAGGAGCCAGAGGACA 60.152 57.895 0.00 0.00 0.00 4.02
3620 4802 1.298014 CACCAAGGAGCCAGAGGAC 59.702 63.158 0.00 0.00 0.00 3.85
3621 4803 1.152030 ACACCAAGGAGCCAGAGGA 60.152 57.895 0.00 0.00 0.00 3.71
3622 4804 1.298014 GACACCAAGGAGCCAGAGG 59.702 63.158 0.00 0.00 0.00 3.69
3623 4805 0.617413 ATGACACCAAGGAGCCAGAG 59.383 55.000 0.00 0.00 0.00 3.35
3624 4806 0.615331 GATGACACCAAGGAGCCAGA 59.385 55.000 0.00 0.00 0.00 3.86
3625 4807 0.617413 AGATGACACCAAGGAGCCAG 59.383 55.000 0.00 0.00 0.00 4.85
3626 4808 0.325933 CAGATGACACCAAGGAGCCA 59.674 55.000 0.00 0.00 0.00 4.75
3627 4809 0.393537 CCAGATGACACCAAGGAGCC 60.394 60.000 0.00 0.00 0.00 4.70
3628 4810 0.393537 CCCAGATGACACCAAGGAGC 60.394 60.000 0.00 0.00 0.00 4.70
3629 4811 1.209019 CTCCCAGATGACACCAAGGAG 59.791 57.143 0.00 0.00 0.00 3.69
3630 4812 1.279496 CTCCCAGATGACACCAAGGA 58.721 55.000 0.00 0.00 0.00 3.36
3631 4813 0.393537 GCTCCCAGATGACACCAAGG 60.394 60.000 0.00 0.00 0.00 3.61
3632 4814 0.742281 CGCTCCCAGATGACACCAAG 60.742 60.000 0.00 0.00 0.00 3.61
3633 4815 1.296392 CGCTCCCAGATGACACCAA 59.704 57.895 0.00 0.00 0.00 3.67
3634 4816 1.888436 GACGCTCCCAGATGACACCA 61.888 60.000 0.00 0.00 0.00 4.17
3635 4817 1.153549 GACGCTCCCAGATGACACC 60.154 63.158 0.00 0.00 0.00 4.16
3636 4818 1.517257 CGACGCTCCCAGATGACAC 60.517 63.158 0.00 0.00 0.00 3.67
3637 4819 1.248101 TTCGACGCTCCCAGATGACA 61.248 55.000 0.00 0.00 0.00 3.58
3638 4820 0.526524 CTTCGACGCTCCCAGATGAC 60.527 60.000 0.00 0.00 0.00 3.06
3639 4821 1.809869 CTTCGACGCTCCCAGATGA 59.190 57.895 0.00 0.00 0.00 2.92
3640 4822 1.880340 GCTTCGACGCTCCCAGATG 60.880 63.158 6.65 0.00 0.00 2.90
3641 4823 1.608717 AAGCTTCGACGCTCCCAGAT 61.609 55.000 17.51 0.00 39.86 2.90
3642 4824 0.963856 TAAGCTTCGACGCTCCCAGA 60.964 55.000 17.51 0.00 39.86 3.86
3643 4825 0.103208 ATAAGCTTCGACGCTCCCAG 59.897 55.000 17.51 0.00 39.86 4.45
3644 4826 0.179111 CATAAGCTTCGACGCTCCCA 60.179 55.000 17.51 6.10 39.86 4.37
3645 4827 0.179108 ACATAAGCTTCGACGCTCCC 60.179 55.000 17.51 0.00 39.86 4.30
3646 4828 1.588861 GAACATAAGCTTCGACGCTCC 59.411 52.381 17.51 0.00 39.86 4.70
3647 4829 1.588861 GGAACATAAGCTTCGACGCTC 59.411 52.381 17.51 3.49 39.86 5.03
3648 4830 1.067142 TGGAACATAAGCTTCGACGCT 60.067 47.619 11.12 11.12 43.31 5.07
3649 4831 1.355971 TGGAACATAAGCTTCGACGC 58.644 50.000 0.00 5.63 0.00 5.19
3650 4832 2.348666 CCTTGGAACATAAGCTTCGACG 59.651 50.000 0.00 0.00 39.30 5.12
3651 4833 3.371285 GTCCTTGGAACATAAGCTTCGAC 59.629 47.826 0.00 0.00 39.30 4.20
3652 4834 3.596214 GTCCTTGGAACATAAGCTTCGA 58.404 45.455 0.00 0.00 39.30 3.71
3653 4835 2.678336 GGTCCTTGGAACATAAGCTTCG 59.322 50.000 0.00 0.00 39.30 3.79
3654 4836 3.691609 CAGGTCCTTGGAACATAAGCTTC 59.308 47.826 0.00 0.00 39.30 3.86
3655 4837 3.562176 CCAGGTCCTTGGAACATAAGCTT 60.562 47.826 3.48 3.48 40.87 3.74
3656 4838 2.025887 CCAGGTCCTTGGAACATAAGCT 60.026 50.000 7.51 0.00 40.87 3.74
3657 4839 2.369394 CCAGGTCCTTGGAACATAAGC 58.631 52.381 7.51 0.00 40.87 3.09
3658 4840 2.369394 GCCAGGTCCTTGGAACATAAG 58.631 52.381 7.51 0.00 40.87 1.73
3659 4841 1.005450 GGCCAGGTCCTTGGAACATAA 59.995 52.381 7.51 0.00 40.87 1.90
3660 4842 0.623723 GGCCAGGTCCTTGGAACATA 59.376 55.000 7.51 0.00 40.87 2.29
3661 4843 1.384191 GGCCAGGTCCTTGGAACAT 59.616 57.895 7.51 0.00 40.87 2.71
3662 4844 2.067932 CTGGCCAGGTCCTTGGAACA 62.068 60.000 26.14 7.77 40.87 3.18
3663 4845 1.303643 CTGGCCAGGTCCTTGGAAC 60.304 63.158 26.14 0.00 40.87 3.62
3664 4846 1.463214 TCTGGCCAGGTCCTTGGAA 60.463 57.895 32.23 6.93 40.87 3.53
3665 4847 2.206900 TCTGGCCAGGTCCTTGGA 59.793 61.111 32.23 8.03 40.87 3.53
3666 4848 2.352805 GTCTGGCCAGGTCCTTGG 59.647 66.667 32.23 5.36 41.35 3.61
3667 4849 2.227036 AGGTCTGGCCAGGTCCTTG 61.227 63.158 31.04 11.26 40.61 3.61
3668 4850 2.208349 AGGTCTGGCCAGGTCCTT 59.792 61.111 31.04 20.72 40.61 3.36
3669 4851 2.608988 CAGGTCTGGCCAGGTCCT 60.609 66.667 31.04 31.04 40.61 3.85
3670 4852 3.721706 CCAGGTCTGGCCAGGTCC 61.722 72.222 32.23 30.02 44.73 4.46
3679 4861 1.004918 GACGACAACCCCAGGTCTG 60.005 63.158 0.00 0.00 33.12 3.51
3680 4862 2.214920 GGACGACAACCCCAGGTCT 61.215 63.158 0.00 0.00 33.12 3.85
3681 4863 2.047213 TTGGACGACAACCCCAGGTC 62.047 60.000 0.00 0.00 33.12 3.85
3682 4864 2.073716 TTGGACGACAACCCCAGGT 61.074 57.895 0.00 0.00 37.65 4.00
3683 4865 2.833227 TTGGACGACAACCCCAGG 59.167 61.111 0.00 0.00 33.18 4.45
3690 4872 4.058124 CAATGAAGAGAGTTGGACGACAA 58.942 43.478 0.00 0.00 36.54 3.18
3691 4873 3.653344 CAATGAAGAGAGTTGGACGACA 58.347 45.455 0.00 0.00 0.00 4.35
3692 4874 2.413453 GCAATGAAGAGAGTTGGACGAC 59.587 50.000 0.00 0.00 0.00 4.34
3693 4875 2.612972 GGCAATGAAGAGAGTTGGACGA 60.613 50.000 0.00 0.00 0.00 4.20
3694 4876 1.734465 GGCAATGAAGAGAGTTGGACG 59.266 52.381 0.00 0.00 0.00 4.79
3695 4877 2.746362 CAGGCAATGAAGAGAGTTGGAC 59.254 50.000 0.00 0.00 0.00 4.02
3696 4878 2.877300 GCAGGCAATGAAGAGAGTTGGA 60.877 50.000 0.00 0.00 0.00 3.53
3697 4879 1.471684 GCAGGCAATGAAGAGAGTTGG 59.528 52.381 0.00 0.00 0.00 3.77
3698 4880 2.434428 AGCAGGCAATGAAGAGAGTTG 58.566 47.619 0.00 0.00 0.00 3.16
3699 4881 2.875094 AGCAGGCAATGAAGAGAGTT 57.125 45.000 0.00 0.00 0.00 3.01
3700 4882 2.305343 AGAAGCAGGCAATGAAGAGAGT 59.695 45.455 0.00 0.00 0.00 3.24
3701 4883 2.937799 GAGAAGCAGGCAATGAAGAGAG 59.062 50.000 0.00 0.00 0.00 3.20
3702 4884 2.355513 GGAGAAGCAGGCAATGAAGAGA 60.356 50.000 0.00 0.00 0.00 3.10
3703 4885 2.015587 GGAGAAGCAGGCAATGAAGAG 58.984 52.381 0.00 0.00 0.00 2.85
3704 4886 1.676916 CGGAGAAGCAGGCAATGAAGA 60.677 52.381 0.00 0.00 0.00 2.87
3705 4887 0.731417 CGGAGAAGCAGGCAATGAAG 59.269 55.000 0.00 0.00 0.00 3.02
3706 4888 0.677731 CCGGAGAAGCAGGCAATGAA 60.678 55.000 0.00 0.00 0.00 2.57
3707 4889 1.078214 CCGGAGAAGCAGGCAATGA 60.078 57.895 0.00 0.00 0.00 2.57
3708 4890 1.078214 TCCGGAGAAGCAGGCAATG 60.078 57.895 0.00 0.00 0.00 2.82
3709 4891 1.222936 CTCCGGAGAAGCAGGCAAT 59.777 57.895 28.21 0.00 0.00 3.56
3710 4892 2.217038 ACTCCGGAGAAGCAGGCAA 61.217 57.895 37.69 0.00 0.00 4.52
3711 4893 2.604686 ACTCCGGAGAAGCAGGCA 60.605 61.111 37.69 0.00 0.00 4.75
3712 4894 2.125350 CACTCCGGAGAAGCAGGC 60.125 66.667 37.69 0.00 0.00 4.85
3713 4895 2.581354 CCACTCCGGAGAAGCAGG 59.419 66.667 37.69 23.71 36.56 4.85
3714 4896 2.125350 GCCACTCCGGAGAAGCAG 60.125 66.667 37.69 19.95 36.56 4.24
3715 4897 4.069232 CGCCACTCCGGAGAAGCA 62.069 66.667 37.69 0.00 36.49 3.91
3716 4898 3.760035 TCGCCACTCCGGAGAAGC 61.760 66.667 37.69 32.56 41.17 3.86
3720 4902 0.673644 AACAAATCGCCACTCCGGAG 60.674 55.000 30.11 30.11 36.56 4.63
3721 4903 0.250553 AAACAAATCGCCACTCCGGA 60.251 50.000 2.93 2.93 36.56 5.14
3722 4904 0.596082 AAAACAAATCGCCACTCCGG 59.404 50.000 0.00 0.00 38.11 5.14
3723 4905 1.401018 GGAAAACAAATCGCCACTCCG 60.401 52.381 0.00 0.00 0.00 4.63
3724 4906 1.611491 TGGAAAACAAATCGCCACTCC 59.389 47.619 0.00 0.00 0.00 3.85
3725 4907 2.552315 TCTGGAAAACAAATCGCCACTC 59.448 45.455 0.00 0.00 0.00 3.51
3726 4908 2.582052 TCTGGAAAACAAATCGCCACT 58.418 42.857 0.00 0.00 0.00 4.00
3727 4909 3.575965 ATCTGGAAAACAAATCGCCAC 57.424 42.857 0.00 0.00 0.00 5.01
3728 4910 3.320541 ACAATCTGGAAAACAAATCGCCA 59.679 39.130 0.00 0.00 0.00 5.69
3729 4911 3.913089 ACAATCTGGAAAACAAATCGCC 58.087 40.909 0.00 0.00 0.00 5.54
3730 4912 6.806249 TGATAACAATCTGGAAAACAAATCGC 59.194 34.615 0.00 0.00 0.00 4.58
3731 4913 8.915871 ATGATAACAATCTGGAAAACAAATCG 57.084 30.769 0.00 0.00 0.00 3.34
3732 4914 9.013490 CGATGATAACAATCTGGAAAACAAATC 57.987 33.333 0.00 0.00 0.00 2.17
3733 4915 8.915871 CGATGATAACAATCTGGAAAACAAAT 57.084 30.769 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.