Multiple sequence alignment - TraesCS3A01G273600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G273600 chr3A 100.000 1806 0 0 912 2717 502490306 502492111 0.000000e+00 3336.0
1 TraesCS3A01G273600 chr3A 100.000 359 0 0 1 359 502489395 502489753 0.000000e+00 664.0
2 TraesCS3A01G273600 chr3D 92.391 1485 59 20 912 2393 378529246 378530679 0.000000e+00 2067.0
3 TraesCS3A01G273600 chr3D 87.399 373 31 13 2 359 378528802 378529173 5.410000e-112 414.0
4 TraesCS3A01G273600 chr3B 90.568 1548 55 35 912 2404 493584481 493585992 0.000000e+00 1965.0
5 TraesCS3A01G273600 chr3B 87.562 201 25 0 2517 2717 559890706 559890506 1.630000e-57 233.0
6 TraesCS3A01G273600 chr3B 97.059 68 2 0 220 287 493584294 493584361 6.150000e-22 115.0
7 TraesCS3A01G273600 chr7B 84.190 525 40 19 1895 2409 399533267 399533758 1.140000e-128 470.0
8 TraesCS3A01G273600 chr6A 83.619 525 43 19 1895 2409 421534904 421535395 1.150000e-123 453.0
9 TraesCS3A01G273600 chr6A 87.624 202 23 2 2517 2717 583381189 583381389 1.630000e-57 233.0
10 TraesCS3A01G273600 chr6A 87.685 203 22 2 2517 2717 600699094 600699295 1.630000e-57 233.0
11 TraesCS3A01G273600 chr7A 83.429 525 44 20 1895 2409 285046447 285046938 5.340000e-122 448.0
12 TraesCS3A01G273600 chr4B 82.857 525 47 20 1895 2409 162842933 162842442 5.370000e-117 431.0
13 TraesCS3A01G273600 chr4B 85.149 101 14 1 53 153 13359692 13359791 4.790000e-18 102.0
14 TraesCS3A01G273600 chr2B 83.366 505 41 21 1915 2409 342171214 342170743 6.950000e-116 427.0
15 TraesCS3A01G273600 chr1A 82.667 525 48 19 1895 2409 351140074 351139583 2.500000e-115 425.0
16 TraesCS3A01G273600 chr1A 76.280 742 105 48 1014 1718 528103039 528102332 2.020000e-86 329.0
17 TraesCS3A01G273600 chr1A 88.462 208 24 0 2510 2717 476976973 476977180 4.490000e-63 252.0
18 TraesCS3A01G273600 chr1A 87.562 201 25 0 2517 2717 469372557 469372757 1.630000e-57 233.0
19 TraesCS3A01G273600 chr1B 76.966 725 101 42 1014 1705 581596283 581595592 1.200000e-93 353.0
20 TraesCS3A01G273600 chr1D 76.680 729 97 41 1006 1695 430482143 430481449 1.210000e-88 337.0
21 TraesCS3A01G273600 chr1D 87.624 202 23 2 2517 2717 62671937 62672137 1.630000e-57 233.0
22 TraesCS3A01G273600 chr4A 89.447 199 21 0 2516 2714 624340771 624340969 4.490000e-63 252.0
23 TraesCS3A01G273600 chr4A 87.317 205 26 0 2513 2717 537958214 537958418 4.520000e-58 235.0
24 TraesCS3A01G273600 chr4A 87.685 203 22 3 2517 2717 66340585 66340786 1.630000e-57 233.0
25 TraesCS3A01G273600 chr5D 95.833 48 2 0 2316 2363 511208131 511208084 8.070000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G273600 chr3A 502489395 502492111 2716 False 2000.0 3336 100.0000 1 2717 2 chr3A.!!$F1 2716
1 TraesCS3A01G273600 chr3D 378528802 378530679 1877 False 1240.5 2067 89.8950 2 2393 2 chr3D.!!$F1 2391
2 TraesCS3A01G273600 chr3B 493584294 493585992 1698 False 1040.0 1965 93.8135 220 2404 2 chr3B.!!$F1 2184
3 TraesCS3A01G273600 chr1A 528102332 528103039 707 True 329.0 329 76.2800 1014 1718 1 chr1A.!!$R2 704
4 TraesCS3A01G273600 chr1B 581595592 581596283 691 True 353.0 353 76.9660 1014 1705 1 chr1B.!!$R1 691
5 TraesCS3A01G273600 chr1D 430481449 430482143 694 True 337.0 337 76.6800 1006 1695 1 chr1D.!!$R1 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 145 0.103208 GAGATGATCGTCCGGCTTGT 59.897 55.0 11.42 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2170 0.036765 ACGAGATTACAAGGCCGCAA 60.037 50.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.677552 CTCCACTACACACCACCCC 59.322 63.158 0.00 0.00 0.00 4.95
22 23 2.167398 CTCCACTACACACCACCCCG 62.167 65.000 0.00 0.00 0.00 5.73
36 37 2.412323 CCCCGTCCGACGATCTTCA 61.412 63.158 22.40 0.00 46.05 3.02
44 45 1.002251 CCGACGATCTTCAGCCTACTC 60.002 57.143 0.00 0.00 0.00 2.59
47 48 1.309950 CGATCTTCAGCCTACTCCGA 58.690 55.000 0.00 0.00 0.00 4.55
48 49 1.883275 CGATCTTCAGCCTACTCCGAT 59.117 52.381 0.00 0.00 0.00 4.18
51 52 4.438065 CGATCTTCAGCCTACTCCGATATG 60.438 50.000 0.00 0.00 0.00 1.78
55 56 0.905337 AGCCTACTCCGATATGGGGC 60.905 60.000 3.67 0.00 45.03 5.80
56 57 1.900545 GCCTACTCCGATATGGGGCC 61.901 65.000 3.67 0.00 45.03 5.80
57 58 0.544357 CCTACTCCGATATGGGGCCA 60.544 60.000 4.39 0.00 45.03 5.36
58 59 0.898320 CTACTCCGATATGGGGCCAG 59.102 60.000 4.39 0.00 45.03 4.85
59 60 1.192146 TACTCCGATATGGGGCCAGC 61.192 60.000 4.39 0.00 45.03 4.85
61 62 4.704833 CCGATATGGGGCCAGCGG 62.705 72.222 4.39 5.00 34.57 5.52
62 63 3.625897 CGATATGGGGCCAGCGGA 61.626 66.667 4.39 0.00 0.00 5.54
63 64 2.959484 CGATATGGGGCCAGCGGAT 61.959 63.158 4.39 0.00 0.00 4.18
64 65 1.078143 GATATGGGGCCAGCGGATC 60.078 63.158 4.39 0.00 0.00 3.36
65 66 2.543067 GATATGGGGCCAGCGGATCC 62.543 65.000 4.39 0.00 0.00 3.36
76 79 0.739561 AGCGGATCCGAGTTCTACAC 59.260 55.000 37.64 15.98 42.83 2.90
79 82 1.749634 CGGATCCGAGTTCTACACCTT 59.250 52.381 30.62 0.00 42.83 3.50
80 83 2.223525 CGGATCCGAGTTCTACACCTTC 60.224 54.545 30.62 0.00 42.83 3.46
85 88 4.087182 TCCGAGTTCTACACCTTCAGATT 58.913 43.478 0.00 0.00 0.00 2.40
92 95 3.945921 TCTACACCTTCAGATTCGTCGAT 59.054 43.478 0.00 0.00 0.00 3.59
103 106 1.989966 TTCGTCGATCCCGAGCTCAC 61.990 60.000 15.40 1.02 46.52 3.51
105 108 2.833582 TCGATCCCGAGCTCACCC 60.834 66.667 15.40 0.00 40.30 4.61
142 145 0.103208 GAGATGATCGTCCGGCTTGT 59.897 55.000 11.42 0.00 0.00 3.16
146 149 1.741770 GATCGTCCGGCTTGTGCTT 60.742 57.895 0.00 0.00 39.59 3.91
156 159 2.280797 TTGTGCTTCGCCGCTTCT 60.281 55.556 0.00 0.00 0.00 2.85
168 171 1.153647 CGCTTCTGGGATGCGTGTA 60.154 57.895 16.04 0.00 46.21 2.90
172 175 2.205074 CTTCTGGGATGCGTGTATGAC 58.795 52.381 0.00 0.00 0.00 3.06
195 199 0.393808 TGGATTTGCCTAAGTCCGGC 60.394 55.000 0.00 0.00 43.56 6.13
216 222 5.671493 GGCTGTAGATGCTAGGTAGAAAAA 58.329 41.667 0.00 0.00 0.00 1.94
272 285 3.557185 CAGCAAGAAAAGGAACAAAAGCC 59.443 43.478 0.00 0.00 0.00 4.35
328 343 1.806542 CATCCGTCCAAAGTCCAGTTG 59.193 52.381 0.00 0.00 0.00 3.16
935 950 1.230182 TTCTCCCCCTTCCCTTCCC 60.230 63.158 0.00 0.00 0.00 3.97
936 951 1.772561 TTCTCCCCCTTCCCTTCCCT 61.773 60.000 0.00 0.00 0.00 4.20
937 952 1.230314 CTCCCCCTTCCCTTCCCTT 60.230 63.158 0.00 0.00 0.00 3.95
938 953 1.230182 TCCCCCTTCCCTTCCCTTC 60.230 63.158 0.00 0.00 0.00 3.46
939 954 2.317378 CCCCCTTCCCTTCCCTTCC 61.317 68.421 0.00 0.00 0.00 3.46
940 955 2.317378 CCCCTTCCCTTCCCTTCCC 61.317 68.421 0.00 0.00 0.00 3.97
1143 1158 2.978010 CCGCACCCACACAACCTC 60.978 66.667 0.00 0.00 0.00 3.85
1152 1167 4.760047 CACAACCTCCCGCCCTCG 62.760 72.222 0.00 0.00 0.00 4.63
1234 1249 0.397941 CACCACCTCCTTCAAGCAGA 59.602 55.000 0.00 0.00 0.00 4.26
1772 1841 1.661341 CTCAGCCAGCCATGAAGTAC 58.339 55.000 0.00 0.00 0.00 2.73
1831 1909 4.056050 TCCTTTGTTCGCAGTTCTAGTTC 58.944 43.478 0.00 0.00 0.00 3.01
1842 1925 6.825213 TCGCAGTTCTAGTTCCATAGTAGTAA 59.175 38.462 0.00 0.00 32.51 2.24
1943 2026 2.158460 AGGGGAGTTGGTTCTCTTTTGG 60.158 50.000 0.00 0.00 35.11 3.28
1946 2029 1.613925 GAGTTGGTTCTCTTTTGGGGC 59.386 52.381 0.00 0.00 0.00 5.80
1986 2069 8.365399 TCGATTAATTACAGCTTCATTTCGAT 57.635 30.769 0.00 0.00 0.00 3.59
1988 2071 7.472492 CGATTAATTACAGCTTCATTTCGATCG 59.528 37.037 9.36 9.36 0.00 3.69
1989 2072 7.764695 TTAATTACAGCTTCATTTCGATCGA 57.235 32.000 15.15 15.15 0.00 3.59
1990 2073 5.896922 ATTACAGCTTCATTTCGATCGAG 57.103 39.130 18.54 7.22 0.00 4.04
1994 2077 2.606725 AGCTTCATTTCGATCGAGCTTG 59.393 45.455 18.54 16.01 0.00 4.01
1995 2078 2.848751 GCTTCATTTCGATCGAGCTTGC 60.849 50.000 18.54 14.39 0.00 4.01
1996 2079 2.299993 TCATTTCGATCGAGCTTGCT 57.700 45.000 18.54 0.00 0.00 3.91
1997 2080 3.436700 TCATTTCGATCGAGCTTGCTA 57.563 42.857 18.54 0.00 0.00 3.49
1998 2081 3.982475 TCATTTCGATCGAGCTTGCTAT 58.018 40.909 18.54 2.24 0.00 2.97
2000 2083 1.491670 TTCGATCGAGCTTGCTATGC 58.508 50.000 18.54 0.00 0.00 3.14
2007 2090 2.230025 TCGAGCTTGCTATGCTAGATCC 59.770 50.000 11.96 0.00 41.93 3.36
2014 2097 2.300152 TGCTATGCTAGATCCTTTCCCG 59.700 50.000 0.00 0.00 0.00 5.14
2030 2113 5.065731 CCTTTCCCGATTCTGATCTTCTTTG 59.934 44.000 0.00 0.00 0.00 2.77
2051 2140 4.155709 TGGGTTGCTGTTTGGATTGATTA 58.844 39.130 0.00 0.00 0.00 1.75
2058 2147 4.439289 GCTGTTTGGATTGATTACCTCTGC 60.439 45.833 0.00 0.00 0.00 4.26
2059 2148 4.922206 TGTTTGGATTGATTACCTCTGCT 58.078 39.130 0.00 0.00 0.00 4.24
2081 2170 1.301401 CATCGACCACCACCGTTGT 60.301 57.895 0.00 0.00 0.00 3.32
2103 2210 0.174845 CGGCCTTGTAATCTCGTGGA 59.825 55.000 0.00 0.00 0.00 4.02
2113 2220 1.270907 ATCTCGTGGAAAGGAGCAGT 58.729 50.000 0.00 0.00 0.00 4.40
2117 2224 0.957395 CGTGGAAAGGAGCAGTGCAT 60.957 55.000 19.20 1.90 0.00 3.96
2118 2225 0.524862 GTGGAAAGGAGCAGTGCATG 59.475 55.000 19.20 0.00 0.00 4.06
2119 2226 0.111061 TGGAAAGGAGCAGTGCATGT 59.889 50.000 19.20 0.00 0.00 3.21
2120 2227 0.524862 GGAAAGGAGCAGTGCATGTG 59.475 55.000 19.20 0.00 0.00 3.21
2121 2228 0.524862 GAAAGGAGCAGTGCATGTGG 59.475 55.000 19.20 0.00 0.00 4.17
2122 2229 0.111061 AAAGGAGCAGTGCATGTGGA 59.889 50.000 19.20 0.00 0.00 4.02
2123 2230 0.330604 AAGGAGCAGTGCATGTGGAT 59.669 50.000 19.20 0.00 0.00 3.41
2124 2231 0.393944 AGGAGCAGTGCATGTGGATG 60.394 55.000 19.20 0.00 0.00 3.51
2138 2250 3.812262 TGTGGATGCATATGGTCTGAAG 58.188 45.455 0.00 0.00 0.00 3.02
2167 2279 0.594110 TTGTCCAAAATCCGGCGTTC 59.406 50.000 6.01 0.00 0.00 3.95
2171 2283 1.511887 CAAAATCCGGCGTTCGCTG 60.512 57.895 17.55 17.55 37.59 5.18
2172 2284 3.322706 AAAATCCGGCGTTCGCTGC 62.323 57.895 18.82 2.33 36.28 5.25
2173 2285 4.760047 AATCCGGCGTTCGCTGCT 62.760 61.111 18.82 6.94 36.28 4.24
2248 2362 1.338579 TGGTATGCTCGCATCACACAA 60.339 47.619 7.79 0.00 37.82 3.33
2249 2363 1.942657 GGTATGCTCGCATCACACAAT 59.057 47.619 7.79 0.00 37.82 2.71
2252 2366 3.891056 ATGCTCGCATCACACAATATG 57.109 42.857 0.00 0.00 29.42 1.78
2253 2367 2.903798 TGCTCGCATCACACAATATGA 58.096 42.857 0.00 0.00 0.00 2.15
2254 2368 2.609002 TGCTCGCATCACACAATATGAC 59.391 45.455 0.00 0.00 0.00 3.06
2255 2369 2.032549 GCTCGCATCACACAATATGACC 60.033 50.000 0.00 0.00 0.00 4.02
2256 2370 3.461061 CTCGCATCACACAATATGACCT 58.539 45.455 0.00 0.00 0.00 3.85
2257 2371 3.457234 TCGCATCACACAATATGACCTC 58.543 45.455 0.00 0.00 0.00 3.85
2312 2426 4.730949 ATTTGCATGGGAGTGATTCTTG 57.269 40.909 0.00 0.00 0.00 3.02
2320 2434 3.265791 GGGAGTGATTCTTGTACTGCAG 58.734 50.000 13.48 13.48 34.89 4.41
2373 2487 0.238553 GCTTGGCACTTTTCGGTCTC 59.761 55.000 0.00 0.00 0.00 3.36
2396 2510 2.036414 AGCAGTCCTCGAGGCAGA 59.964 61.111 27.39 6.96 34.44 4.26
2397 2511 1.381056 AGCAGTCCTCGAGGCAGAT 60.381 57.895 27.39 14.22 34.44 2.90
2398 2512 1.227205 GCAGTCCTCGAGGCAGATG 60.227 63.158 27.39 20.61 34.44 2.90
2399 2513 1.954362 GCAGTCCTCGAGGCAGATGT 61.954 60.000 27.39 3.98 34.44 3.06
2400 2514 1.393603 CAGTCCTCGAGGCAGATGTA 58.606 55.000 27.39 4.41 34.44 2.29
2401 2515 1.066303 CAGTCCTCGAGGCAGATGTAC 59.934 57.143 27.39 17.13 34.44 2.90
2402 2516 1.064314 AGTCCTCGAGGCAGATGTACT 60.064 52.381 27.39 19.14 34.44 2.73
2403 2517 2.172930 AGTCCTCGAGGCAGATGTACTA 59.827 50.000 27.39 1.89 34.44 1.82
2404 2518 2.291190 GTCCTCGAGGCAGATGTACTAC 59.709 54.545 27.39 11.55 34.44 2.73
2405 2519 2.172930 TCCTCGAGGCAGATGTACTACT 59.827 50.000 27.39 0.00 34.44 2.57
2406 2520 2.550606 CCTCGAGGCAGATGTACTACTC 59.449 54.545 20.67 0.00 0.00 2.59
2407 2521 2.550606 CTCGAGGCAGATGTACTACTCC 59.449 54.545 3.91 0.00 32.06 3.85
2408 2522 2.172930 TCGAGGCAGATGTACTACTCCT 59.827 50.000 0.00 3.21 32.06 3.69
2409 2523 3.390311 TCGAGGCAGATGTACTACTCCTA 59.610 47.826 0.00 0.00 32.06 2.94
2410 2524 3.749088 CGAGGCAGATGTACTACTCCTAG 59.251 52.174 0.00 0.00 32.06 3.02
2411 2525 4.721132 GAGGCAGATGTACTACTCCTAGT 58.279 47.826 0.00 0.00 37.04 2.57
2412 2526 5.511031 CGAGGCAGATGTACTACTCCTAGTA 60.511 48.000 0.00 0.00 34.79 1.82
2424 2538 6.436738 CTACTCCTAGTAGTACCTGGATCA 57.563 45.833 0.00 3.75 42.41 2.92
2425 2539 5.933846 ACTCCTAGTAGTACCTGGATCAT 57.066 43.478 0.00 0.82 0.00 2.45
2426 2540 5.883180 ACTCCTAGTAGTACCTGGATCATC 58.117 45.833 0.00 0.00 0.00 2.92
2427 2541 5.613544 ACTCCTAGTAGTACCTGGATCATCT 59.386 44.000 0.00 0.00 0.00 2.90
2428 2542 5.882040 TCCTAGTAGTACCTGGATCATCTG 58.118 45.833 0.00 0.00 0.00 2.90
2429 2543 4.461081 CCTAGTAGTACCTGGATCATCTGC 59.539 50.000 0.00 0.00 0.00 4.26
2430 2544 3.235200 AGTAGTACCTGGATCATCTGCC 58.765 50.000 0.00 0.00 0.00 4.85
2431 2545 1.428869 AGTACCTGGATCATCTGCCC 58.571 55.000 0.00 0.00 0.00 5.36
2432 2546 1.131638 GTACCTGGATCATCTGCCCA 58.868 55.000 0.00 0.00 0.00 5.36
2433 2547 1.071385 GTACCTGGATCATCTGCCCAG 59.929 57.143 0.00 0.00 45.28 4.45
2435 2549 2.536411 CTGGATCATCTGCCCAGGA 58.464 57.895 0.00 0.00 42.75 3.86
2436 2550 0.397187 CTGGATCATCTGCCCAGGAG 59.603 60.000 0.00 0.00 42.75 3.69
2437 2551 1.058428 TGGATCATCTGCCCAGGAGG 61.058 60.000 0.00 0.00 39.47 4.30
2438 2552 1.059006 GGATCATCTGCCCAGGAGGT 61.059 60.000 0.00 0.00 38.26 3.85
2439 2553 1.722034 GATCATCTGCCCAGGAGGTA 58.278 55.000 0.00 0.00 38.26 3.08
2440 2554 1.346068 GATCATCTGCCCAGGAGGTAC 59.654 57.143 0.00 0.00 38.26 3.34
2441 2555 0.691078 TCATCTGCCCAGGAGGTACC 60.691 60.000 2.73 2.73 38.26 3.34
2442 2556 0.982852 CATCTGCCCAGGAGGTACCA 60.983 60.000 15.94 0.00 42.04 3.25
2443 2557 0.253160 ATCTGCCCAGGAGGTACCAA 60.253 55.000 15.94 0.00 42.04 3.67
2444 2558 1.198759 TCTGCCCAGGAGGTACCAAC 61.199 60.000 15.94 6.18 42.04 3.77
2454 2568 4.382320 GTACCAACCGCGCCAGGA 62.382 66.667 14.54 0.00 34.73 3.86
2455 2569 3.395702 TACCAACCGCGCCAGGAT 61.396 61.111 14.54 0.00 34.73 3.24
2456 2570 2.961893 TACCAACCGCGCCAGGATT 61.962 57.895 14.54 0.00 34.73 3.01
2457 2571 2.862674 TACCAACCGCGCCAGGATTC 62.863 60.000 14.54 0.00 34.73 2.52
2458 2572 3.864686 CAACCGCGCCAGGATTCG 61.865 66.667 8.44 0.00 34.73 3.34
2464 2578 4.513519 CGCCAGGATTCGCAGTTA 57.486 55.556 0.00 0.00 0.00 2.24
2465 2579 2.006772 CGCCAGGATTCGCAGTTAC 58.993 57.895 0.00 0.00 0.00 2.50
2466 2580 0.460284 CGCCAGGATTCGCAGTTACT 60.460 55.000 0.00 0.00 0.00 2.24
2467 2581 1.291132 GCCAGGATTCGCAGTTACTC 58.709 55.000 0.00 0.00 0.00 2.59
2468 2582 1.941325 CCAGGATTCGCAGTTACTCC 58.059 55.000 0.00 0.00 0.00 3.85
2469 2583 1.482593 CCAGGATTCGCAGTTACTCCT 59.517 52.381 0.00 0.00 36.79 3.69
2470 2584 2.093447 CCAGGATTCGCAGTTACTCCTT 60.093 50.000 0.00 0.00 34.09 3.36
2471 2585 2.932614 CAGGATTCGCAGTTACTCCTTG 59.067 50.000 0.00 0.00 34.09 3.61
2472 2586 1.666189 GGATTCGCAGTTACTCCTTGC 59.334 52.381 0.00 0.00 34.58 4.01
2473 2587 2.346803 GATTCGCAGTTACTCCTTGCA 58.653 47.619 0.00 0.00 37.69 4.08
2474 2588 2.472695 TTCGCAGTTACTCCTTGCAT 57.527 45.000 0.00 0.00 37.69 3.96
2475 2589 1.725641 TCGCAGTTACTCCTTGCATG 58.274 50.000 0.00 0.00 37.69 4.06
2476 2590 1.001974 TCGCAGTTACTCCTTGCATGT 59.998 47.619 0.00 0.00 37.69 3.21
2477 2591 1.806542 CGCAGTTACTCCTTGCATGTT 59.193 47.619 0.00 0.00 37.69 2.71
2478 2592 2.226437 CGCAGTTACTCCTTGCATGTTT 59.774 45.455 0.00 0.00 37.69 2.83
2479 2593 3.304659 CGCAGTTACTCCTTGCATGTTTT 60.305 43.478 0.00 0.00 37.69 2.43
2480 2594 4.620982 GCAGTTACTCCTTGCATGTTTTT 58.379 39.130 0.00 0.00 37.75 1.94
2481 2595 4.681483 GCAGTTACTCCTTGCATGTTTTTC 59.319 41.667 0.00 0.00 37.75 2.29
2482 2596 5.735922 GCAGTTACTCCTTGCATGTTTTTCA 60.736 40.000 0.00 0.00 37.75 2.69
2483 2597 5.916883 CAGTTACTCCTTGCATGTTTTTCAG 59.083 40.000 0.00 0.00 0.00 3.02
2484 2598 3.375782 ACTCCTTGCATGTTTTTCAGC 57.624 42.857 0.00 0.00 0.00 4.26
2485 2599 2.287788 ACTCCTTGCATGTTTTTCAGCG 60.288 45.455 0.00 0.00 0.00 5.18
2486 2600 1.952990 TCCTTGCATGTTTTTCAGCGA 59.047 42.857 0.00 0.00 0.00 4.93
2487 2601 2.053627 CCTTGCATGTTTTTCAGCGAC 58.946 47.619 0.00 0.00 0.00 5.19
2488 2602 2.053627 CTTGCATGTTTTTCAGCGACC 58.946 47.619 0.00 0.00 0.00 4.79
2489 2603 0.040514 TGCATGTTTTTCAGCGACCG 60.041 50.000 0.00 0.00 0.00 4.79
2490 2604 0.237235 GCATGTTTTTCAGCGACCGA 59.763 50.000 0.00 0.00 0.00 4.69
2491 2605 1.950472 CATGTTTTTCAGCGACCGAC 58.050 50.000 0.00 0.00 0.00 4.79
2492 2606 1.531149 CATGTTTTTCAGCGACCGACT 59.469 47.619 0.00 0.00 0.00 4.18
2493 2607 1.214367 TGTTTTTCAGCGACCGACTC 58.786 50.000 0.00 0.00 0.00 3.36
2494 2608 1.214367 GTTTTTCAGCGACCGACTCA 58.786 50.000 0.00 0.00 0.00 3.41
2495 2609 1.798813 GTTTTTCAGCGACCGACTCAT 59.201 47.619 0.00 0.00 0.00 2.90
2496 2610 1.710013 TTTTCAGCGACCGACTCATC 58.290 50.000 0.00 0.00 0.00 2.92
2497 2611 0.601057 TTTCAGCGACCGACTCATCA 59.399 50.000 0.00 0.00 0.00 3.07
2498 2612 0.171231 TTCAGCGACCGACTCATCAG 59.829 55.000 0.00 0.00 0.00 2.90
2499 2613 0.960861 TCAGCGACCGACTCATCAGT 60.961 55.000 0.00 0.00 34.57 3.41
2500 2614 0.524392 CAGCGACCGACTCATCAGTC 60.524 60.000 0.00 0.00 45.19 3.51
2501 2615 1.226717 GCGACCGACTCATCAGTCC 60.227 63.158 0.00 0.00 45.81 3.85
2502 2616 1.658686 GCGACCGACTCATCAGTCCT 61.659 60.000 0.00 0.00 45.81 3.85
2503 2617 0.811915 CGACCGACTCATCAGTCCTT 59.188 55.000 0.00 0.00 45.81 3.36
2504 2618 1.468224 CGACCGACTCATCAGTCCTTG 60.468 57.143 0.00 0.00 45.81 3.61
2505 2619 1.819288 GACCGACTCATCAGTCCTTGA 59.181 52.381 0.00 0.00 45.81 3.02
2506 2620 1.546476 ACCGACTCATCAGTCCTTGAC 59.454 52.381 0.00 0.00 45.81 3.18
2507 2621 1.468224 CCGACTCATCAGTCCTTGACG 60.468 57.143 0.00 0.00 45.81 4.35
2508 2622 1.634702 GACTCATCAGTCCTTGACGC 58.365 55.000 0.00 0.00 43.14 5.19
2509 2623 1.203523 GACTCATCAGTCCTTGACGCT 59.796 52.381 0.00 0.00 43.14 5.07
2510 2624 1.203523 ACTCATCAGTCCTTGACGCTC 59.796 52.381 0.00 0.00 38.99 5.03
2511 2625 1.203287 CTCATCAGTCCTTGACGCTCA 59.797 52.381 0.00 0.00 38.99 4.26
2512 2626 1.827344 TCATCAGTCCTTGACGCTCAT 59.173 47.619 0.00 0.00 38.99 2.90
2513 2627 2.159184 TCATCAGTCCTTGACGCTCATC 60.159 50.000 0.00 0.00 38.99 2.92
2514 2628 1.256812 TCAGTCCTTGACGCTCATCA 58.743 50.000 0.00 0.00 37.67 3.07
2515 2629 1.618343 TCAGTCCTTGACGCTCATCAA 59.382 47.619 0.00 0.00 37.67 2.57
2525 2639 3.254629 GCTCATCAAGCCAACTCCA 57.745 52.632 0.00 0.00 45.92 3.86
2526 2640 0.807496 GCTCATCAAGCCAACTCCAC 59.193 55.000 0.00 0.00 45.92 4.02
2527 2641 1.457346 CTCATCAAGCCAACTCCACC 58.543 55.000 0.00 0.00 0.00 4.61
2528 2642 0.321564 TCATCAAGCCAACTCCACCG 60.322 55.000 0.00 0.00 0.00 4.94
2529 2643 1.675641 ATCAAGCCAACTCCACCGC 60.676 57.895 0.00 0.00 0.00 5.68
2530 2644 3.726517 CAAGCCAACTCCACCGCG 61.727 66.667 0.00 0.00 0.00 6.46
2531 2645 4.250305 AAGCCAACTCCACCGCGT 62.250 61.111 4.92 0.00 0.00 6.01
2532 2646 4.988598 AGCCAACTCCACCGCGTG 62.989 66.667 4.92 3.32 0.00 5.34
2533 2647 4.980805 GCCAACTCCACCGCGTGA 62.981 66.667 4.92 0.00 35.23 4.35
2534 2648 3.041940 CCAACTCCACCGCGTGAC 61.042 66.667 4.92 0.00 35.23 3.67
2535 2649 3.041940 CAACTCCACCGCGTGACC 61.042 66.667 4.92 0.00 35.23 4.02
2536 2650 4.309950 AACTCCACCGCGTGACCC 62.310 66.667 4.92 0.00 35.23 4.46
2538 2652 3.066190 CTCCACCGCGTGACCCTA 61.066 66.667 4.92 0.00 35.23 3.53
2539 2653 2.363276 TCCACCGCGTGACCCTAT 60.363 61.111 4.92 0.00 35.23 2.57
2540 2654 2.106332 CCACCGCGTGACCCTATC 59.894 66.667 4.92 0.00 35.23 2.08
2541 2655 2.106332 CACCGCGTGACCCTATCC 59.894 66.667 4.92 0.00 35.23 2.59
2542 2656 2.043248 ACCGCGTGACCCTATCCT 60.043 61.111 4.92 0.00 0.00 3.24
2543 2657 1.105167 CACCGCGTGACCCTATCCTA 61.105 60.000 4.92 0.00 35.23 2.94
2544 2658 0.178970 ACCGCGTGACCCTATCCTAT 60.179 55.000 4.92 0.00 0.00 2.57
2545 2659 0.526662 CCGCGTGACCCTATCCTATC 59.473 60.000 4.92 0.00 0.00 2.08
2546 2660 0.526662 CGCGTGACCCTATCCTATCC 59.473 60.000 0.00 0.00 0.00 2.59
2547 2661 0.526662 GCGTGACCCTATCCTATCCG 59.473 60.000 0.00 0.00 0.00 4.18
2548 2662 1.174783 CGTGACCCTATCCTATCCGG 58.825 60.000 0.00 0.00 0.00 5.14
2549 2663 1.547223 CGTGACCCTATCCTATCCGGT 60.547 57.143 0.00 0.00 0.00 5.28
2550 2664 2.169330 GTGACCCTATCCTATCCGGTC 58.831 57.143 0.00 0.00 42.78 4.79
2551 2665 2.071372 TGACCCTATCCTATCCGGTCT 58.929 52.381 0.00 0.00 42.88 3.85
2552 2666 2.041350 TGACCCTATCCTATCCGGTCTC 59.959 54.545 0.00 0.00 42.88 3.36
2553 2667 1.004511 ACCCTATCCTATCCGGTCTCG 59.995 57.143 0.00 0.00 0.00 4.04
2554 2668 1.004511 CCCTATCCTATCCGGTCTCGT 59.995 57.143 0.00 0.00 33.95 4.18
2555 2669 2.358015 CCTATCCTATCCGGTCTCGTC 58.642 57.143 0.00 0.00 33.95 4.20
2556 2670 2.358015 CTATCCTATCCGGTCTCGTCC 58.642 57.143 0.00 0.00 33.95 4.79
2563 2677 4.148230 CGGTCTCGTCCGTTTGAG 57.852 61.111 7.90 0.00 44.77 3.02
2564 2678 1.577922 CGGTCTCGTCCGTTTGAGA 59.422 57.895 7.90 0.00 44.77 3.27
2565 2679 0.170561 CGGTCTCGTCCGTTTGAGAT 59.829 55.000 7.90 0.00 42.73 2.75
2566 2680 1.399440 CGGTCTCGTCCGTTTGAGATA 59.601 52.381 7.90 0.00 42.73 1.98
2567 2681 2.159476 CGGTCTCGTCCGTTTGAGATAA 60.159 50.000 7.90 0.00 42.73 1.75
2568 2682 3.671433 CGGTCTCGTCCGTTTGAGATAAA 60.671 47.826 7.90 0.00 42.73 1.40
2569 2683 4.240096 GGTCTCGTCCGTTTGAGATAAAA 58.760 43.478 1.76 0.00 42.73 1.52
2570 2684 4.868734 GGTCTCGTCCGTTTGAGATAAAAT 59.131 41.667 1.76 0.00 42.73 1.82
2571 2685 5.220416 GGTCTCGTCCGTTTGAGATAAAATG 60.220 44.000 1.76 0.00 42.73 2.32
2572 2686 4.868171 TCTCGTCCGTTTGAGATAAAATGG 59.132 41.667 2.16 2.16 44.40 3.16
2577 2691 6.885952 TCCGTTTGAGATAAAATGGACAAA 57.114 33.333 6.53 0.00 45.88 2.83
2578 2692 6.908825 TCCGTTTGAGATAAAATGGACAAAG 58.091 36.000 6.53 0.00 45.88 2.77
2579 2693 6.712998 TCCGTTTGAGATAAAATGGACAAAGA 59.287 34.615 6.53 0.00 45.88 2.52
2580 2694 7.229707 TCCGTTTGAGATAAAATGGACAAAGAA 59.770 33.333 6.53 0.00 45.88 2.52
2581 2695 7.538678 CCGTTTGAGATAAAATGGACAAAGAAG 59.461 37.037 2.37 0.00 45.42 2.85
2582 2696 7.538678 CGTTTGAGATAAAATGGACAAAGAAGG 59.461 37.037 0.00 0.00 0.00 3.46
2583 2697 8.576442 GTTTGAGATAAAATGGACAAAGAAGGA 58.424 33.333 0.00 0.00 0.00 3.36
2584 2698 7.928307 TGAGATAAAATGGACAAAGAAGGAG 57.072 36.000 0.00 0.00 0.00 3.69
2585 2699 6.886459 TGAGATAAAATGGACAAAGAAGGAGG 59.114 38.462 0.00 0.00 0.00 4.30
2586 2700 5.654209 AGATAAAATGGACAAAGAAGGAGGC 59.346 40.000 0.00 0.00 0.00 4.70
2587 2701 2.222227 AATGGACAAAGAAGGAGGCC 57.778 50.000 0.00 0.00 0.00 5.19
2588 2702 0.332972 ATGGACAAAGAAGGAGGCCC 59.667 55.000 0.00 0.00 0.00 5.80
2589 2703 1.065410 TGGACAAAGAAGGAGGCCCA 61.065 55.000 0.00 0.00 33.88 5.36
2590 2704 0.322906 GGACAAAGAAGGAGGCCCAG 60.323 60.000 0.00 0.00 33.88 4.45
2591 2705 0.962855 GACAAAGAAGGAGGCCCAGC 60.963 60.000 0.00 0.00 33.88 4.85
2592 2706 2.042831 CAAAGAAGGAGGCCCAGCG 61.043 63.158 0.00 0.00 33.88 5.18
2593 2707 3.927481 AAAGAAGGAGGCCCAGCGC 62.927 63.158 0.00 0.00 33.88 5.92
2612 2726 4.664677 CGACGGCCCGGATCCATC 62.665 72.222 13.41 0.00 0.00 3.51
2613 2727 3.234730 GACGGCCCGGATCCATCT 61.235 66.667 13.41 0.00 0.00 2.90
2614 2728 2.768344 ACGGCCCGGATCCATCTT 60.768 61.111 13.41 0.00 0.00 2.40
2615 2729 1.458777 ACGGCCCGGATCCATCTTA 60.459 57.895 13.41 0.00 0.00 2.10
2616 2730 0.836400 ACGGCCCGGATCCATCTTAT 60.836 55.000 13.41 0.00 0.00 1.73
2617 2731 0.108138 CGGCCCGGATCCATCTTATC 60.108 60.000 13.41 0.00 0.00 1.75
2618 2732 0.253327 GGCCCGGATCCATCTTATCC 59.747 60.000 13.41 0.00 39.71 2.59
2619 2733 0.984230 GCCCGGATCCATCTTATCCA 59.016 55.000 13.41 0.00 42.69 3.41
2620 2734 1.561542 GCCCGGATCCATCTTATCCAT 59.438 52.381 13.41 0.00 42.69 3.41
2621 2735 2.025887 GCCCGGATCCATCTTATCCATT 60.026 50.000 13.41 0.00 42.69 3.16
2622 2736 3.562176 GCCCGGATCCATCTTATCCATTT 60.562 47.826 13.41 0.00 42.69 2.32
2623 2737 4.666512 CCCGGATCCATCTTATCCATTTT 58.333 43.478 13.41 0.00 42.69 1.82
2624 2738 4.460382 CCCGGATCCATCTTATCCATTTTG 59.540 45.833 13.41 0.00 42.69 2.44
2625 2739 5.072741 CCGGATCCATCTTATCCATTTTGT 58.927 41.667 13.41 0.00 42.69 2.83
2626 2740 5.048504 CCGGATCCATCTTATCCATTTTGTG 60.049 44.000 13.41 0.00 42.69 3.33
2627 2741 5.532406 CGGATCCATCTTATCCATTTTGTGT 59.468 40.000 13.41 0.00 42.69 3.72
2628 2742 6.293626 CGGATCCATCTTATCCATTTTGTGTC 60.294 42.308 13.41 0.00 42.69 3.67
2629 2743 6.015940 GGATCCATCTTATCCATTTTGTGTCC 60.016 42.308 6.95 0.00 42.21 4.02
2630 2744 4.881273 TCCATCTTATCCATTTTGTGTCCG 59.119 41.667 0.00 0.00 0.00 4.79
2631 2745 4.036734 CCATCTTATCCATTTTGTGTCCGG 59.963 45.833 0.00 0.00 0.00 5.14
2632 2746 3.616219 TCTTATCCATTTTGTGTCCGGG 58.384 45.455 0.00 0.00 0.00 5.73
2633 2747 1.757682 TATCCATTTTGTGTCCGGGC 58.242 50.000 0.00 0.00 0.00 6.13
2634 2748 0.970427 ATCCATTTTGTGTCCGGGCC 60.970 55.000 2.12 0.00 0.00 5.80
2635 2749 2.566010 CATTTTGTGTCCGGGCCG 59.434 61.111 21.46 21.46 0.00 6.13
2636 2750 1.969064 CATTTTGTGTCCGGGCCGA 60.969 57.895 30.79 11.12 0.00 5.54
2637 2751 1.969589 ATTTTGTGTCCGGGCCGAC 60.970 57.895 30.79 22.88 0.00 4.79
2638 2752 4.629523 TTTGTGTCCGGGCCGACC 62.630 66.667 30.79 17.72 31.35 4.79
2648 2762 2.267961 GGCCGACCCATTTCGAGT 59.732 61.111 0.00 0.00 41.78 4.18
2649 2763 2.106683 GGCCGACCCATTTCGAGTG 61.107 63.158 0.00 0.00 41.78 3.51
2650 2764 1.375523 GCCGACCCATTTCGAGTGT 60.376 57.895 0.00 0.00 41.78 3.55
2651 2765 0.108520 GCCGACCCATTTCGAGTGTA 60.109 55.000 0.00 0.00 41.78 2.90
2652 2766 1.673626 GCCGACCCATTTCGAGTGTAA 60.674 52.381 0.00 0.00 41.78 2.41
2653 2767 2.690786 CCGACCCATTTCGAGTGTAAA 58.309 47.619 0.00 0.00 41.78 2.01
2654 2768 3.267483 CCGACCCATTTCGAGTGTAAAT 58.733 45.455 0.00 0.00 41.78 1.40
2655 2769 3.687698 CCGACCCATTTCGAGTGTAAATT 59.312 43.478 0.00 0.00 41.78 1.82
2656 2770 4.155280 CCGACCCATTTCGAGTGTAAATTT 59.845 41.667 0.00 0.00 41.78 1.82
2657 2771 5.086058 CGACCCATTTCGAGTGTAAATTTG 58.914 41.667 0.00 0.00 41.78 2.32
2658 2772 5.334569 CGACCCATTTCGAGTGTAAATTTGT 60.335 40.000 0.00 0.00 41.78 2.83
2659 2773 5.768317 ACCCATTTCGAGTGTAAATTTGTG 58.232 37.500 0.00 0.00 0.00 3.33
2660 2774 4.621034 CCCATTTCGAGTGTAAATTTGTGC 59.379 41.667 0.00 0.00 0.00 4.57
2661 2775 4.621034 CCATTTCGAGTGTAAATTTGTGCC 59.379 41.667 0.00 0.00 0.00 5.01
2662 2776 3.529634 TTCGAGTGTAAATTTGTGCCG 57.470 42.857 0.00 0.00 0.00 5.69
2663 2777 1.801771 TCGAGTGTAAATTTGTGCCGG 59.198 47.619 0.00 0.00 0.00 6.13
2664 2778 1.135803 CGAGTGTAAATTTGTGCCGGG 60.136 52.381 2.18 0.00 0.00 5.73
2665 2779 1.883926 GAGTGTAAATTTGTGCCGGGT 59.116 47.619 2.18 0.00 0.00 5.28
2666 2780 2.295070 GAGTGTAAATTTGTGCCGGGTT 59.705 45.455 2.18 0.00 0.00 4.11
2667 2781 2.696187 AGTGTAAATTTGTGCCGGGTTT 59.304 40.909 2.18 0.00 0.00 3.27
2668 2782 2.797719 GTGTAAATTTGTGCCGGGTTTG 59.202 45.455 2.18 0.00 0.00 2.93
2669 2783 2.224066 TGTAAATTTGTGCCGGGTTTGG 60.224 45.455 2.18 0.00 0.00 3.28
2670 2784 0.107643 AAATTTGTGCCGGGTTTGGG 59.892 50.000 2.18 0.00 0.00 4.12
2671 2785 1.051556 AATTTGTGCCGGGTTTGGGT 61.052 50.000 2.18 0.00 0.00 4.51
2672 2786 1.468506 ATTTGTGCCGGGTTTGGGTC 61.469 55.000 2.18 0.00 0.00 4.46
2673 2787 4.939368 TGTGCCGGGTTTGGGTCG 62.939 66.667 2.18 0.00 0.00 4.79
2674 2788 4.941309 GTGCCGGGTTTGGGTCGT 62.941 66.667 2.18 0.00 0.00 4.34
2675 2789 4.939368 TGCCGGGTTTGGGTCGTG 62.939 66.667 2.18 0.00 0.00 4.35
2679 2793 4.629523 GGGTTTGGGTCGTGGCGA 62.630 66.667 0.00 0.00 0.00 5.54
2680 2794 2.592287 GGTTTGGGTCGTGGCGAA 60.592 61.111 0.00 0.00 37.72 4.70
2681 2795 2.635338 GTTTGGGTCGTGGCGAAC 59.365 61.111 0.00 0.00 43.47 3.95
2682 2796 2.181521 GTTTGGGTCGTGGCGAACA 61.182 57.895 8.83 1.55 46.28 3.18
2683 2797 2.181521 TTTGGGTCGTGGCGAACAC 61.182 57.895 8.83 0.00 46.28 3.32
2684 2798 4.612412 TGGGTCGTGGCGAACACC 62.612 66.667 8.83 5.32 46.28 4.16
2685 2799 4.612412 GGGTCGTGGCGAACACCA 62.612 66.667 8.83 0.00 46.28 4.17
2691 2805 2.399856 GTGGCGAACACCAAACTGA 58.600 52.632 0.00 0.00 44.49 3.41
2692 2806 0.028902 GTGGCGAACACCAAACTGAC 59.971 55.000 0.00 0.00 44.49 3.51
2693 2807 0.393132 TGGCGAACACCAAACTGACA 60.393 50.000 0.00 0.00 36.55 3.58
2694 2808 0.028902 GGCGAACACCAAACTGACAC 59.971 55.000 0.00 0.00 0.00 3.67
2695 2809 0.315869 GCGAACACCAAACTGACACG 60.316 55.000 0.00 0.00 0.00 4.49
2696 2810 0.315869 CGAACACCAAACTGACACGC 60.316 55.000 0.00 0.00 0.00 5.34
2697 2811 0.730265 GAACACCAAACTGACACGCA 59.270 50.000 0.00 0.00 0.00 5.24
2698 2812 0.450184 AACACCAAACTGACACGCAC 59.550 50.000 0.00 0.00 0.00 5.34
2699 2813 0.392461 ACACCAAACTGACACGCACT 60.392 50.000 0.00 0.00 0.00 4.40
2700 2814 0.304705 CACCAAACTGACACGCACTC 59.695 55.000 0.00 0.00 0.00 3.51
2701 2815 1.151777 ACCAAACTGACACGCACTCG 61.152 55.000 0.00 0.00 42.43 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.374252 GTGGTGTGTAGTGGAGGCG 60.374 63.158 0.00 0.00 0.00 5.52
21 22 1.586564 GGCTGAAGATCGTCGGACG 60.587 63.158 23.73 23.73 44.19 4.79
22 23 1.022735 TAGGCTGAAGATCGTCGGAC 58.977 55.000 20.10 17.61 31.29 4.79
36 37 0.905337 GCCCCATATCGGAGTAGGCT 60.905 60.000 0.00 0.00 35.92 4.58
44 45 4.704833 CCGCTGGCCCCATATCGG 62.705 72.222 0.00 0.00 0.00 4.18
47 48 2.606587 GGATCCGCTGGCCCCATAT 61.607 63.158 0.00 0.00 0.00 1.78
48 49 3.249189 GGATCCGCTGGCCCCATA 61.249 66.667 0.00 0.00 0.00 2.74
54 55 1.735376 TAGAACTCGGATCCGCTGGC 61.735 60.000 29.62 17.48 39.59 4.85
55 56 0.030908 GTAGAACTCGGATCCGCTGG 59.969 60.000 29.62 21.69 39.59 4.85
56 57 0.738975 TGTAGAACTCGGATCCGCTG 59.261 55.000 29.62 24.19 39.59 5.18
57 58 0.739561 GTGTAGAACTCGGATCCGCT 59.260 55.000 29.62 21.45 39.59 5.52
58 59 0.248949 GGTGTAGAACTCGGATCCGC 60.249 60.000 29.62 15.19 39.59 5.54
59 60 1.390565 AGGTGTAGAACTCGGATCCG 58.609 55.000 28.62 28.62 41.35 4.18
61 62 3.695060 TCTGAAGGTGTAGAACTCGGATC 59.305 47.826 0.00 0.00 0.00 3.36
62 63 3.698289 TCTGAAGGTGTAGAACTCGGAT 58.302 45.455 0.00 0.00 0.00 4.18
63 64 3.150458 TCTGAAGGTGTAGAACTCGGA 57.850 47.619 0.00 0.00 0.00 4.55
64 65 4.425520 GAATCTGAAGGTGTAGAACTCGG 58.574 47.826 0.00 0.00 0.00 4.63
65 66 4.099120 CGAATCTGAAGGTGTAGAACTCG 58.901 47.826 0.00 0.00 0.00 4.18
76 79 1.600663 CGGGATCGACGAATCTGAAGG 60.601 57.143 0.00 0.00 39.00 3.46
79 82 0.945099 CTCGGGATCGACGAATCTGA 59.055 55.000 0.00 6.88 40.88 3.27
80 83 0.661780 GCTCGGGATCGACGAATCTG 60.662 60.000 0.00 2.40 40.88 2.90
85 88 2.124860 TGAGCTCGGGATCGACGA 60.125 61.111 9.64 0.00 40.88 4.20
103 106 4.760047 CCTCAGAACCGCGTGGGG 62.760 72.222 21.14 5.58 41.60 4.96
105 108 2.125912 CTCCTCAGAACCGCGTGG 60.126 66.667 14.93 14.93 42.84 4.94
114 117 2.488167 GGACGATCATCTCCTCCTCAGA 60.488 54.545 0.00 0.00 0.00 3.27
146 149 4.838152 GCATCCCAGAAGCGGCGA 62.838 66.667 12.98 0.00 0.00 5.54
156 159 4.825377 CGTCATACACGCATCCCA 57.175 55.556 0.00 0.00 42.87 4.37
168 171 2.799126 TAGGCAAATCCAACCGTCAT 57.201 45.000 0.00 0.00 37.29 3.06
172 175 1.743394 GGACTTAGGCAAATCCAACCG 59.257 52.381 0.00 0.00 37.29 4.44
176 179 3.873781 CCGGACTTAGGCAAATCCA 57.126 52.632 0.00 0.00 37.29 3.41
216 222 8.466798 TCAATTTTCTCTCGTCTTTTTCCTTTT 58.533 29.630 0.00 0.00 0.00 2.27
272 285 1.324718 CACTCACGTCCGTTACTTCG 58.675 55.000 0.00 0.00 0.00 3.79
297 310 1.902508 TGGACGGATGCTTTCTCTCTT 59.097 47.619 0.00 0.00 0.00 2.85
328 343 3.840890 TTGTTGTTGGTGTGAACTGTC 57.159 42.857 0.00 0.00 0.00 3.51
1162 1177 3.550431 CTCGATGGTGCGGGGGAT 61.550 66.667 0.00 0.00 0.00 3.85
1234 1249 1.439228 CGGTGAGCATCTGGACGAT 59.561 57.895 0.00 0.00 34.92 3.73
1831 1909 7.277981 CAGCAAACACCTTACTTACTACTATGG 59.722 40.741 0.00 0.00 0.00 2.74
1842 1925 2.210116 CGACACAGCAAACACCTTACT 58.790 47.619 0.00 0.00 0.00 2.24
1883 1966 1.124116 GCAAAAATTACAACAGCGGCG 59.876 47.619 0.51 0.51 0.00 6.46
1884 1967 2.403259 AGCAAAAATTACAACAGCGGC 58.597 42.857 0.00 0.00 0.00 6.53
1885 1968 2.986479 GGAGCAAAAATTACAACAGCGG 59.014 45.455 0.00 0.00 0.00 5.52
1886 1969 2.986479 GGGAGCAAAAATTACAACAGCG 59.014 45.455 0.00 0.00 0.00 5.18
1943 2026 1.140816 GATTAATCGAGTCGCAGCCC 58.859 55.000 7.92 0.00 0.00 5.19
1978 2061 3.663754 GCATAGCAAGCTCGATCGAAATG 60.664 47.826 19.92 17.59 0.00 2.32
1986 2069 2.230025 GGATCTAGCATAGCAAGCTCGA 59.770 50.000 0.00 1.78 42.32 4.04
1988 2071 3.959535 AGGATCTAGCATAGCAAGCTC 57.040 47.619 0.00 0.00 42.32 4.09
1989 2072 4.504689 GGAAAGGATCTAGCATAGCAAGCT 60.505 45.833 0.00 0.00 45.77 3.74
1990 2073 3.750652 GGAAAGGATCTAGCATAGCAAGC 59.249 47.826 0.00 0.00 38.99 4.01
1994 2077 2.563179 TCGGGAAAGGATCTAGCATAGC 59.437 50.000 0.00 0.00 38.99 2.97
1995 2078 5.186797 AGAATCGGGAAAGGATCTAGCATAG 59.813 44.000 0.00 0.00 41.04 2.23
1996 2079 5.047021 CAGAATCGGGAAAGGATCTAGCATA 60.047 44.000 0.00 0.00 0.00 3.14
1997 2080 3.906846 AGAATCGGGAAAGGATCTAGCAT 59.093 43.478 0.00 0.00 0.00 3.79
1998 2081 3.070159 CAGAATCGGGAAAGGATCTAGCA 59.930 47.826 0.00 0.00 0.00 3.49
2000 2083 5.480073 AGATCAGAATCGGGAAAGGATCTAG 59.520 44.000 0.00 0.00 38.48 2.43
2007 2090 5.065731 CCAAAGAAGATCAGAATCGGGAAAG 59.934 44.000 0.00 0.00 36.97 2.62
2014 2097 4.704057 AGCAACCCAAAGAAGATCAGAATC 59.296 41.667 0.00 0.00 0.00 2.52
2030 2113 3.683365 AATCAATCCAAACAGCAACCC 57.317 42.857 0.00 0.00 0.00 4.11
2051 2140 0.820871 GGTCGATGAAGAGCAGAGGT 59.179 55.000 0.00 0.00 38.41 3.85
2058 2147 0.458543 CGGTGGTGGTCGATGAAGAG 60.459 60.000 0.00 0.00 0.00 2.85
2059 2148 1.183030 ACGGTGGTGGTCGATGAAGA 61.183 55.000 0.00 0.00 0.00 2.87
2081 2170 0.036765 ACGAGATTACAAGGCCGCAA 60.037 50.000 0.00 0.00 0.00 4.85
2103 2210 0.111061 TCCACATGCACTGCTCCTTT 59.889 50.000 1.98 0.00 0.00 3.11
2117 2224 3.812262 CTTCAGACCATATGCATCCACA 58.188 45.455 0.19 0.00 0.00 4.17
2118 2225 2.551459 GCTTCAGACCATATGCATCCAC 59.449 50.000 0.19 0.00 0.00 4.02
2119 2226 2.440627 AGCTTCAGACCATATGCATCCA 59.559 45.455 0.19 0.00 0.00 3.41
2120 2227 2.812591 CAGCTTCAGACCATATGCATCC 59.187 50.000 0.19 0.00 0.00 3.51
2121 2228 2.225963 GCAGCTTCAGACCATATGCATC 59.774 50.000 0.19 0.00 32.58 3.91
2122 2229 2.228059 GCAGCTTCAGACCATATGCAT 58.772 47.619 3.79 3.79 32.58 3.96
2123 2230 1.671979 GCAGCTTCAGACCATATGCA 58.328 50.000 0.00 0.00 32.58 3.96
2124 2231 0.950116 GGCAGCTTCAGACCATATGC 59.050 55.000 0.00 0.00 0.00 3.14
2138 2250 4.122046 GGATTTTGGACAATTATGGCAGC 58.878 43.478 0.00 0.00 35.69 5.25
2173 2285 1.001764 CTCACCTGGATTGCAGCCA 60.002 57.895 0.00 9.67 0.00 4.75
2174 2286 1.751927 CCTCACCTGGATTGCAGCC 60.752 63.158 0.00 0.97 0.00 4.85
2186 2298 3.119137 GGCATGTTTCCAAATACCTCACC 60.119 47.826 0.00 0.00 0.00 4.02
2248 2362 7.937942 ACTTGTAGTATACTGTCGAGGTCATAT 59.062 37.037 15.90 0.00 43.54 1.78
2249 2363 7.278135 ACTTGTAGTATACTGTCGAGGTCATA 58.722 38.462 15.90 0.00 43.54 2.15
2252 2366 6.760770 ACTACTTGTAGTATACTGTCGAGGTC 59.239 42.308 15.90 0.00 43.54 3.85
2253 2367 6.648192 ACTACTTGTAGTATACTGTCGAGGT 58.352 40.000 15.90 8.88 43.54 3.85
2254 2368 8.296799 CTACTACTTGTAGTATACTGTCGAGG 57.703 42.308 15.90 8.18 43.54 4.63
2279 2393 6.019779 TCCCATGCAAATTTTGTGTACTAC 57.980 37.500 10.65 0.00 0.00 2.73
2280 2394 5.772672 ACTCCCATGCAAATTTTGTGTACTA 59.227 36.000 10.65 0.00 0.00 1.82
2281 2395 4.588528 ACTCCCATGCAAATTTTGTGTACT 59.411 37.500 10.65 0.00 0.00 2.73
2282 2396 4.685628 CACTCCCATGCAAATTTTGTGTAC 59.314 41.667 10.65 0.00 0.00 2.90
2283 2397 4.586421 TCACTCCCATGCAAATTTTGTGTA 59.414 37.500 10.65 0.00 0.00 2.90
2284 2398 3.387374 TCACTCCCATGCAAATTTTGTGT 59.613 39.130 10.65 0.00 0.00 3.72
2285 2399 3.992643 TCACTCCCATGCAAATTTTGTG 58.007 40.909 10.65 2.45 0.00 3.33
2286 2400 4.895668 ATCACTCCCATGCAAATTTTGT 57.104 36.364 10.65 0.00 0.00 2.83
2287 2401 5.484715 AGAATCACTCCCATGCAAATTTTG 58.515 37.500 4.72 4.72 0.00 2.44
2288 2402 5.750352 AGAATCACTCCCATGCAAATTTT 57.250 34.783 0.00 0.00 0.00 1.82
2292 2406 3.499338 ACAAGAATCACTCCCATGCAAA 58.501 40.909 0.00 0.00 0.00 3.68
2294 2408 2.885135 ACAAGAATCACTCCCATGCA 57.115 45.000 0.00 0.00 0.00 3.96
2312 2426 4.967437 CAGAATTTGAGCTTCTGCAGTAC 58.033 43.478 14.67 4.42 42.11 2.73
2320 2434 4.474113 CTTGTCAGCAGAATTTGAGCTTC 58.526 43.478 0.00 0.00 36.26 3.86
2355 2469 0.512952 CGAGACCGAAAAGTGCCAAG 59.487 55.000 0.00 0.00 38.22 3.61
2373 2487 1.153939 CTCGAGGACTGCTGGTTCG 60.154 63.158 3.91 1.84 31.63 3.95
2402 2516 6.793482 AGATGATCCAGGTACTACTAGGAGTA 59.207 42.308 11.03 11.03 36.02 2.59
2403 2517 5.613544 AGATGATCCAGGTACTACTAGGAGT 59.386 44.000 13.42 13.42 36.02 3.85
2404 2518 5.943416 CAGATGATCCAGGTACTACTAGGAG 59.057 48.000 0.00 0.00 36.02 3.69
2405 2519 5.749331 GCAGATGATCCAGGTACTACTAGGA 60.749 48.000 0.00 0.00 36.02 2.94
2406 2520 4.461081 GCAGATGATCCAGGTACTACTAGG 59.539 50.000 0.00 0.00 36.02 3.02
2407 2521 4.461081 GGCAGATGATCCAGGTACTACTAG 59.539 50.000 0.00 0.00 36.02 2.57
2408 2522 4.408276 GGCAGATGATCCAGGTACTACTA 58.592 47.826 0.00 0.00 36.02 1.82
2409 2523 3.235200 GGCAGATGATCCAGGTACTACT 58.765 50.000 0.00 0.00 36.02 2.57
2410 2524 2.300437 GGGCAGATGATCCAGGTACTAC 59.700 54.545 0.00 0.00 36.02 2.73
2411 2525 2.090775 TGGGCAGATGATCCAGGTACTA 60.091 50.000 0.00 0.00 36.02 1.82
2412 2526 1.344393 TGGGCAGATGATCCAGGTACT 60.344 52.381 0.00 0.00 43.88 2.73
2413 2527 1.071385 CTGGGCAGATGATCCAGGTAC 59.929 57.143 12.20 0.00 43.09 3.34
2414 2528 1.427809 CTGGGCAGATGATCCAGGTA 58.572 55.000 12.20 0.00 43.09 3.08
2415 2529 2.228711 CTGGGCAGATGATCCAGGT 58.771 57.895 12.20 0.00 43.09 4.00
2417 2531 0.397187 CTCCTGGGCAGATGATCCAG 59.603 60.000 12.78 12.78 45.57 3.86
2418 2532 1.058428 CCTCCTGGGCAGATGATCCA 61.058 60.000 0.00 0.00 0.00 3.41
2419 2533 1.059006 ACCTCCTGGGCAGATGATCC 61.059 60.000 0.00 0.00 39.10 3.36
2420 2534 1.346068 GTACCTCCTGGGCAGATGATC 59.654 57.143 0.00 0.00 39.10 2.92
2421 2535 1.428869 GTACCTCCTGGGCAGATGAT 58.571 55.000 0.00 0.00 39.10 2.45
2422 2536 0.691078 GGTACCTCCTGGGCAGATGA 60.691 60.000 4.06 0.00 39.10 2.92
2423 2537 0.982852 TGGTACCTCCTGGGCAGATG 60.983 60.000 14.36 0.00 39.10 2.90
2424 2538 0.253160 TTGGTACCTCCTGGGCAGAT 60.253 55.000 14.36 0.00 39.10 2.90
2425 2539 1.159905 TTGGTACCTCCTGGGCAGA 59.840 57.895 14.36 0.00 39.10 4.26
2426 2540 1.299976 GTTGGTACCTCCTGGGCAG 59.700 63.158 14.36 0.00 39.10 4.85
2427 2541 2.228480 GGTTGGTACCTCCTGGGCA 61.228 63.158 14.36 0.00 41.53 5.36
2428 2542 2.675371 GGTTGGTACCTCCTGGGC 59.325 66.667 14.36 0.00 41.53 5.36
2429 2543 2.987125 CGGTTGGTACCTCCTGGG 59.013 66.667 14.36 0.25 42.66 4.45
2430 2544 2.267961 GCGGTTGGTACCTCCTGG 59.732 66.667 14.36 5.52 42.66 4.45
2431 2545 2.125673 CGCGGTTGGTACCTCCTG 60.126 66.667 14.36 9.47 42.66 3.86
2432 2546 4.078516 GCGCGGTTGGTACCTCCT 62.079 66.667 14.36 0.00 42.66 3.69
2434 2548 4.382320 TGGCGCGGTTGGTACCTC 62.382 66.667 14.36 6.30 42.66 3.85
2435 2549 4.388499 CTGGCGCGGTTGGTACCT 62.388 66.667 14.36 0.00 42.66 3.08
2437 2551 3.675619 ATCCTGGCGCGGTTGGTAC 62.676 63.158 8.83 0.00 0.00 3.34
2438 2552 2.862674 GAATCCTGGCGCGGTTGGTA 62.863 60.000 8.83 0.00 0.00 3.25
2439 2553 4.344865 AATCCTGGCGCGGTTGGT 62.345 61.111 8.83 0.00 0.00 3.67
2440 2554 3.508840 GAATCCTGGCGCGGTTGG 61.509 66.667 8.83 0.24 0.00 3.77
2441 2555 3.864686 CGAATCCTGGCGCGGTTG 61.865 66.667 8.83 0.00 0.00 3.77
2447 2561 0.460284 AGTAACTGCGAATCCTGGCG 60.460 55.000 0.00 0.00 0.00 5.69
2448 2562 1.291132 GAGTAACTGCGAATCCTGGC 58.709 55.000 0.00 0.00 0.00 4.85
2449 2563 1.482593 AGGAGTAACTGCGAATCCTGG 59.517 52.381 0.00 0.00 38.95 4.45
2450 2564 2.932614 CAAGGAGTAACTGCGAATCCTG 59.067 50.000 0.00 0.00 40.28 3.86
2451 2565 2.678190 GCAAGGAGTAACTGCGAATCCT 60.678 50.000 0.00 0.00 42.21 3.24
2452 2566 1.666189 GCAAGGAGTAACTGCGAATCC 59.334 52.381 0.00 0.00 0.00 3.01
2453 2567 2.346803 TGCAAGGAGTAACTGCGAATC 58.653 47.619 0.00 0.00 0.00 2.52
2454 2568 2.472695 TGCAAGGAGTAACTGCGAAT 57.527 45.000 0.00 0.00 0.00 3.34
2455 2569 2.076100 CATGCAAGGAGTAACTGCGAA 58.924 47.619 0.00 0.00 0.00 4.70
2456 2570 1.001974 ACATGCAAGGAGTAACTGCGA 59.998 47.619 0.00 0.00 0.00 5.10
2457 2571 1.442769 ACATGCAAGGAGTAACTGCG 58.557 50.000 0.00 0.00 0.00 5.18
2458 2572 3.923017 AAACATGCAAGGAGTAACTGC 57.077 42.857 0.00 0.00 0.00 4.40
2459 2573 5.830912 TGAAAAACATGCAAGGAGTAACTG 58.169 37.500 0.00 0.00 0.00 3.16
2460 2574 5.507985 GCTGAAAAACATGCAAGGAGTAACT 60.508 40.000 0.00 0.00 0.00 2.24
2461 2575 4.681483 GCTGAAAAACATGCAAGGAGTAAC 59.319 41.667 0.00 0.00 0.00 2.50
2462 2576 4.556501 CGCTGAAAAACATGCAAGGAGTAA 60.557 41.667 0.00 0.00 0.00 2.24
2463 2577 3.058293 CGCTGAAAAACATGCAAGGAGTA 60.058 43.478 0.00 0.00 0.00 2.59
2464 2578 2.287788 CGCTGAAAAACATGCAAGGAGT 60.288 45.455 0.00 0.00 0.00 3.85
2465 2579 2.030893 TCGCTGAAAAACATGCAAGGAG 60.031 45.455 0.00 0.00 0.00 3.69
2466 2580 1.952990 TCGCTGAAAAACATGCAAGGA 59.047 42.857 0.00 0.00 0.00 3.36
2467 2581 2.053627 GTCGCTGAAAAACATGCAAGG 58.946 47.619 0.00 0.00 0.00 3.61
2468 2582 2.053627 GGTCGCTGAAAAACATGCAAG 58.946 47.619 0.00 0.00 0.00 4.01
2469 2583 1.599171 CGGTCGCTGAAAAACATGCAA 60.599 47.619 0.00 0.00 0.00 4.08
2470 2584 0.040514 CGGTCGCTGAAAAACATGCA 60.041 50.000 0.00 0.00 0.00 3.96
2471 2585 0.237235 TCGGTCGCTGAAAAACATGC 59.763 50.000 0.00 0.00 0.00 4.06
2472 2586 1.531149 AGTCGGTCGCTGAAAAACATG 59.469 47.619 0.00 0.00 0.00 3.21
2473 2587 1.798813 GAGTCGGTCGCTGAAAAACAT 59.201 47.619 0.00 0.00 0.00 2.71
2474 2588 1.214367 GAGTCGGTCGCTGAAAAACA 58.786 50.000 0.00 0.00 0.00 2.83
2475 2589 1.214367 TGAGTCGGTCGCTGAAAAAC 58.786 50.000 0.00 0.00 0.00 2.43
2476 2590 2.066262 GATGAGTCGGTCGCTGAAAAA 58.934 47.619 0.00 0.00 0.00 1.94
2477 2591 1.000394 TGATGAGTCGGTCGCTGAAAA 60.000 47.619 0.00 0.00 0.00 2.29
2478 2592 0.601057 TGATGAGTCGGTCGCTGAAA 59.399 50.000 0.00 0.00 0.00 2.69
2479 2593 0.171231 CTGATGAGTCGGTCGCTGAA 59.829 55.000 0.00 0.00 0.00 3.02
2480 2594 0.960861 ACTGATGAGTCGGTCGCTGA 60.961 55.000 0.00 0.00 39.84 4.26
2481 2595 1.508545 ACTGATGAGTCGGTCGCTG 59.491 57.895 0.00 0.00 39.84 5.18
2482 2596 4.004348 ACTGATGAGTCGGTCGCT 57.996 55.556 0.00 0.00 39.84 4.93
2490 2604 1.203523 GAGCGTCAAGGACTGATGAGT 59.796 52.381 0.00 0.00 42.87 3.41
2491 2605 1.203287 TGAGCGTCAAGGACTGATGAG 59.797 52.381 0.00 0.00 42.87 2.90
2492 2606 1.256812 TGAGCGTCAAGGACTGATGA 58.743 50.000 0.00 0.00 42.87 2.92
2493 2607 2.200067 GATGAGCGTCAAGGACTGATG 58.800 52.381 0.00 0.00 43.07 3.07
2494 2608 1.827344 TGATGAGCGTCAAGGACTGAT 59.173 47.619 0.00 0.00 36.14 2.90
2495 2609 1.256812 TGATGAGCGTCAAGGACTGA 58.743 50.000 0.00 0.00 0.00 3.41
2496 2610 2.084610 TTGATGAGCGTCAAGGACTG 57.915 50.000 1.17 0.00 33.41 3.51
2508 2622 1.457346 GGTGGAGTTGGCTTGATGAG 58.543 55.000 0.00 0.00 0.00 2.90
2509 2623 0.321564 CGGTGGAGTTGGCTTGATGA 60.322 55.000 0.00 0.00 0.00 2.92
2510 2624 1.926511 GCGGTGGAGTTGGCTTGATG 61.927 60.000 0.00 0.00 0.00 3.07
2511 2625 1.675641 GCGGTGGAGTTGGCTTGAT 60.676 57.895 0.00 0.00 0.00 2.57
2512 2626 2.281484 GCGGTGGAGTTGGCTTGA 60.281 61.111 0.00 0.00 0.00 3.02
2513 2627 3.726517 CGCGGTGGAGTTGGCTTG 61.727 66.667 0.00 0.00 0.00 4.01
2514 2628 4.250305 ACGCGGTGGAGTTGGCTT 62.250 61.111 12.47 0.00 0.00 4.35
2515 2629 4.988598 CACGCGGTGGAGTTGGCT 62.989 66.667 12.47 0.00 0.00 4.75
2516 2630 4.980805 TCACGCGGTGGAGTTGGC 62.981 66.667 12.47 0.00 33.87 4.52
2517 2631 3.041940 GTCACGCGGTGGAGTTGG 61.042 66.667 12.47 0.00 33.87 3.77
2518 2632 3.041940 GGTCACGCGGTGGAGTTG 61.042 66.667 12.47 0.00 33.87 3.16
2519 2633 4.309950 GGGTCACGCGGTGGAGTT 62.310 66.667 12.47 0.00 33.87 3.01
2520 2634 3.873679 TAGGGTCACGCGGTGGAGT 62.874 63.158 12.47 0.00 33.87 3.85
2521 2635 2.351336 GATAGGGTCACGCGGTGGAG 62.351 65.000 12.47 0.00 33.87 3.86
2522 2636 2.363276 ATAGGGTCACGCGGTGGA 60.363 61.111 12.47 1.43 33.87 4.02
2523 2637 2.106332 GATAGGGTCACGCGGTGG 59.894 66.667 12.47 0.00 33.87 4.61
2524 2638 1.105167 TAGGATAGGGTCACGCGGTG 61.105 60.000 12.47 6.71 34.45 4.94
2525 2639 0.178970 ATAGGATAGGGTCACGCGGT 60.179 55.000 12.47 0.00 0.00 5.68
2526 2640 0.526662 GATAGGATAGGGTCACGCGG 59.473 60.000 12.47 0.00 0.00 6.46
2527 2641 0.526662 GGATAGGATAGGGTCACGCG 59.473 60.000 3.53 3.53 0.00 6.01
2528 2642 0.526662 CGGATAGGATAGGGTCACGC 59.473 60.000 0.00 0.00 0.00 5.34
2529 2643 1.174783 CCGGATAGGATAGGGTCACG 58.825 60.000 0.00 0.00 45.00 4.35
2530 2644 2.169330 GACCGGATAGGATAGGGTCAC 58.831 57.143 9.46 0.00 45.07 3.67
2531 2645 2.599408 GACCGGATAGGATAGGGTCA 57.401 55.000 9.46 0.00 45.07 4.02
2532 2646 2.725637 GAGACCGGATAGGATAGGGTC 58.274 57.143 9.46 0.35 45.87 4.46
2533 2647 1.004511 CGAGACCGGATAGGATAGGGT 59.995 57.143 9.46 0.00 45.00 4.34
2534 2648 1.004511 ACGAGACCGGATAGGATAGGG 59.995 57.143 9.46 0.00 45.00 3.53
2535 2649 2.358015 GACGAGACCGGATAGGATAGG 58.642 57.143 9.46 0.00 45.00 2.57
2536 2650 2.358015 GGACGAGACCGGATAGGATAG 58.642 57.143 9.46 0.00 45.00 2.08
2537 2651 2.486472 GGACGAGACCGGATAGGATA 57.514 55.000 9.46 0.00 45.00 2.59
2538 2652 3.342982 GGACGAGACCGGATAGGAT 57.657 57.895 9.46 0.00 45.00 3.24
2539 2653 4.894201 GGACGAGACCGGATAGGA 57.106 61.111 9.46 0.00 45.00 2.94
2547 2661 3.498927 TTATCTCAAACGGACGAGACC 57.501 47.619 0.00 0.00 40.92 3.85
2548 2662 5.220416 CCATTTTATCTCAAACGGACGAGAC 60.220 44.000 0.00 0.00 40.92 3.36
2549 2663 4.868171 CCATTTTATCTCAAACGGACGAGA 59.132 41.667 0.00 2.93 42.25 4.04
2550 2664 4.868171 TCCATTTTATCTCAAACGGACGAG 59.132 41.667 0.00 0.00 0.00 4.18
2551 2665 4.628333 GTCCATTTTATCTCAAACGGACGA 59.372 41.667 0.00 0.00 33.03 4.20
2552 2666 4.390603 TGTCCATTTTATCTCAAACGGACG 59.609 41.667 6.86 0.00 43.70 4.79
2553 2667 5.873179 TGTCCATTTTATCTCAAACGGAC 57.127 39.130 4.79 4.79 41.64 4.79
2554 2668 6.712998 TCTTTGTCCATTTTATCTCAAACGGA 59.287 34.615 0.00 0.00 0.00 4.69
2555 2669 6.908825 TCTTTGTCCATTTTATCTCAAACGG 58.091 36.000 0.00 0.00 0.00 4.44
2556 2670 7.538678 CCTTCTTTGTCCATTTTATCTCAAACG 59.461 37.037 0.00 0.00 0.00 3.60
2557 2671 8.576442 TCCTTCTTTGTCCATTTTATCTCAAAC 58.424 33.333 0.00 0.00 0.00 2.93
2558 2672 8.704849 TCCTTCTTTGTCCATTTTATCTCAAA 57.295 30.769 0.00 0.00 0.00 2.69
2559 2673 7.394359 CCTCCTTCTTTGTCCATTTTATCTCAA 59.606 37.037 0.00 0.00 0.00 3.02
2560 2674 6.886459 CCTCCTTCTTTGTCCATTTTATCTCA 59.114 38.462 0.00 0.00 0.00 3.27
2561 2675 6.183360 GCCTCCTTCTTTGTCCATTTTATCTC 60.183 42.308 0.00 0.00 0.00 2.75
2562 2676 5.654209 GCCTCCTTCTTTGTCCATTTTATCT 59.346 40.000 0.00 0.00 0.00 1.98
2563 2677 5.163509 GGCCTCCTTCTTTGTCCATTTTATC 60.164 44.000 0.00 0.00 0.00 1.75
2564 2678 4.711846 GGCCTCCTTCTTTGTCCATTTTAT 59.288 41.667 0.00 0.00 0.00 1.40
2565 2679 4.086457 GGCCTCCTTCTTTGTCCATTTTA 58.914 43.478 0.00 0.00 0.00 1.52
2566 2680 2.899900 GGCCTCCTTCTTTGTCCATTTT 59.100 45.455 0.00 0.00 0.00 1.82
2567 2681 2.529632 GGCCTCCTTCTTTGTCCATTT 58.470 47.619 0.00 0.00 0.00 2.32
2568 2682 1.272704 GGGCCTCCTTCTTTGTCCATT 60.273 52.381 0.84 0.00 0.00 3.16
2569 2683 0.332972 GGGCCTCCTTCTTTGTCCAT 59.667 55.000 0.84 0.00 0.00 3.41
2570 2684 1.065410 TGGGCCTCCTTCTTTGTCCA 61.065 55.000 4.53 0.00 0.00 4.02
2571 2685 0.322906 CTGGGCCTCCTTCTTTGTCC 60.323 60.000 4.53 0.00 0.00 4.02
2572 2686 0.962855 GCTGGGCCTCCTTCTTTGTC 60.963 60.000 4.53 0.00 0.00 3.18
2573 2687 1.075659 GCTGGGCCTCCTTCTTTGT 59.924 57.895 4.53 0.00 0.00 2.83
2574 2688 2.042831 CGCTGGGCCTCCTTCTTTG 61.043 63.158 4.53 0.00 0.00 2.77
2575 2689 2.352805 CGCTGGGCCTCCTTCTTT 59.647 61.111 4.53 0.00 0.00 2.52
2576 2690 4.416738 GCGCTGGGCCTCCTTCTT 62.417 66.667 4.53 0.00 34.80 2.52
2595 2709 4.664677 GATGGATCCGGGCCGTCG 62.665 72.222 26.32 10.85 32.25 5.12
2596 2710 1.469335 TAAGATGGATCCGGGCCGTC 61.469 60.000 26.32 21.86 40.91 4.79
2597 2711 0.836400 ATAAGATGGATCCGGGCCGT 60.836 55.000 26.32 7.05 0.00 5.68
2598 2712 0.108138 GATAAGATGGATCCGGGCCG 60.108 60.000 21.46 21.46 0.00 6.13
2599 2713 0.253327 GGATAAGATGGATCCGGGCC 59.747 60.000 7.39 4.16 33.85 5.80
2600 2714 0.984230 TGGATAAGATGGATCCGGGC 59.016 55.000 7.39 0.00 45.15 6.13
2601 2715 4.307032 AAATGGATAAGATGGATCCGGG 57.693 45.455 7.39 0.00 45.15 5.73
2602 2716 5.048504 CACAAAATGGATAAGATGGATCCGG 60.049 44.000 7.39 0.00 45.15 5.14
2603 2717 5.532406 ACACAAAATGGATAAGATGGATCCG 59.468 40.000 7.39 0.00 45.15 4.18
2604 2718 6.015940 GGACACAAAATGGATAAGATGGATCC 60.016 42.308 4.20 4.20 42.90 3.36
2605 2719 6.293626 CGGACACAAAATGGATAAGATGGATC 60.294 42.308 0.00 0.00 0.00 3.36
2606 2720 5.532406 CGGACACAAAATGGATAAGATGGAT 59.468 40.000 0.00 0.00 0.00 3.41
2607 2721 4.881273 CGGACACAAAATGGATAAGATGGA 59.119 41.667 0.00 0.00 0.00 3.41
2608 2722 4.036734 CCGGACACAAAATGGATAAGATGG 59.963 45.833 0.00 0.00 0.00 3.51
2609 2723 4.036734 CCCGGACACAAAATGGATAAGATG 59.963 45.833 0.73 0.00 0.00 2.90
2610 2724 4.207165 CCCGGACACAAAATGGATAAGAT 58.793 43.478 0.73 0.00 0.00 2.40
2611 2725 3.616219 CCCGGACACAAAATGGATAAGA 58.384 45.455 0.73 0.00 0.00 2.10
2612 2726 2.099098 GCCCGGACACAAAATGGATAAG 59.901 50.000 0.73 0.00 0.00 1.73
2613 2727 2.096248 GCCCGGACACAAAATGGATAA 58.904 47.619 0.73 0.00 0.00 1.75
2614 2728 1.683629 GGCCCGGACACAAAATGGATA 60.684 52.381 0.73 0.00 0.00 2.59
2615 2729 0.970427 GGCCCGGACACAAAATGGAT 60.970 55.000 0.73 0.00 0.00 3.41
2616 2730 1.605165 GGCCCGGACACAAAATGGA 60.605 57.895 0.73 0.00 0.00 3.41
2617 2731 2.969827 GGCCCGGACACAAAATGG 59.030 61.111 0.73 0.00 0.00 3.16
2618 2732 1.969064 TCGGCCCGGACACAAAATG 60.969 57.895 0.73 0.00 0.00 2.32
2619 2733 1.969589 GTCGGCCCGGACACAAAAT 60.970 57.895 0.73 0.00 36.91 1.82
2620 2734 2.592287 GTCGGCCCGGACACAAAA 60.592 61.111 0.73 0.00 36.91 2.44
2621 2735 4.629523 GGTCGGCCCGGACACAAA 62.630 66.667 0.73 0.00 38.70 2.83
2631 2745 2.106683 CACTCGAAATGGGTCGGCC 61.107 63.158 0.00 0.00 41.43 6.13
2632 2746 0.108520 TACACTCGAAATGGGTCGGC 60.109 55.000 1.75 0.00 41.43 5.54
2633 2747 2.373540 TTACACTCGAAATGGGTCGG 57.626 50.000 1.75 0.00 41.43 4.79
2634 2748 4.939509 AATTTACACTCGAAATGGGTCG 57.060 40.909 1.75 0.00 42.48 4.79
2635 2749 5.856455 CACAAATTTACACTCGAAATGGGTC 59.144 40.000 0.00 0.00 0.00 4.46
2636 2750 5.768317 CACAAATTTACACTCGAAATGGGT 58.232 37.500 0.00 0.00 0.00 4.51
2637 2751 4.621034 GCACAAATTTACACTCGAAATGGG 59.379 41.667 0.00 0.00 0.00 4.00
2638 2752 4.621034 GGCACAAATTTACACTCGAAATGG 59.379 41.667 0.00 0.00 0.00 3.16
2639 2753 4.320690 CGGCACAAATTTACACTCGAAATG 59.679 41.667 0.00 0.00 0.00 2.32
2640 2754 4.472286 CGGCACAAATTTACACTCGAAAT 58.528 39.130 0.00 0.00 0.00 2.17
2641 2755 3.304123 CCGGCACAAATTTACACTCGAAA 60.304 43.478 0.00 0.00 0.00 3.46
2642 2756 2.224549 CCGGCACAAATTTACACTCGAA 59.775 45.455 0.00 0.00 0.00 3.71
2643 2757 1.801771 CCGGCACAAATTTACACTCGA 59.198 47.619 0.00 0.00 0.00 4.04
2644 2758 1.135803 CCCGGCACAAATTTACACTCG 60.136 52.381 0.00 0.00 0.00 4.18
2645 2759 1.883926 ACCCGGCACAAATTTACACTC 59.116 47.619 0.00 0.00 0.00 3.51
2646 2760 1.989706 ACCCGGCACAAATTTACACT 58.010 45.000 0.00 0.00 0.00 3.55
2647 2761 2.797719 CAAACCCGGCACAAATTTACAC 59.202 45.455 0.00 0.00 0.00 2.90
2648 2762 2.224066 CCAAACCCGGCACAAATTTACA 60.224 45.455 0.00 0.00 0.00 2.41
2649 2763 2.409012 CCAAACCCGGCACAAATTTAC 58.591 47.619 0.00 0.00 0.00 2.01
2650 2764 1.344763 CCCAAACCCGGCACAAATTTA 59.655 47.619 0.00 0.00 0.00 1.40
2651 2765 0.107643 CCCAAACCCGGCACAAATTT 59.892 50.000 0.00 0.00 0.00 1.82
2652 2766 1.051556 ACCCAAACCCGGCACAAATT 61.052 50.000 0.00 0.00 0.00 1.82
2653 2767 1.458588 ACCCAAACCCGGCACAAAT 60.459 52.632 0.00 0.00 0.00 2.32
2654 2768 2.042843 ACCCAAACCCGGCACAAA 60.043 55.556 0.00 0.00 0.00 2.83
2655 2769 2.519780 GACCCAAACCCGGCACAA 60.520 61.111 0.00 0.00 0.00 3.33
2656 2770 4.939368 CGACCCAAACCCGGCACA 62.939 66.667 0.00 0.00 0.00 4.57
2657 2771 4.941309 ACGACCCAAACCCGGCAC 62.941 66.667 0.00 0.00 0.00 5.01
2658 2772 4.939368 CACGACCCAAACCCGGCA 62.939 66.667 0.00 0.00 0.00 5.69
2662 2776 4.629523 TCGCCACGACCCAAACCC 62.630 66.667 0.00 0.00 0.00 4.11
2663 2777 2.592287 TTCGCCACGACCCAAACC 60.592 61.111 0.00 0.00 34.89 3.27
2664 2778 2.181521 TGTTCGCCACGACCCAAAC 61.182 57.895 0.00 0.00 34.89 2.93
2665 2779 2.181521 GTGTTCGCCACGACCCAAA 61.182 57.895 0.00 0.00 34.89 3.28
2666 2780 2.589442 GTGTTCGCCACGACCCAA 60.589 61.111 0.00 0.00 34.89 4.12
2667 2781 4.612412 GGTGTTCGCCACGACCCA 62.612 66.667 0.00 0.00 45.52 4.51
2668 2782 4.612412 TGGTGTTCGCCACGACCC 62.612 66.667 0.58 0.00 45.52 4.46
2669 2783 2.181521 TTTGGTGTTCGCCACGACC 61.182 57.895 4.48 0.00 45.52 4.79
2670 2784 1.010462 GTTTGGTGTTCGCCACGAC 60.010 57.895 4.48 3.91 45.52 4.34
2671 2785 1.153329 AGTTTGGTGTTCGCCACGA 60.153 52.632 4.48 0.00 45.52 4.35
2672 2786 1.010125 CAGTTTGGTGTTCGCCACG 60.010 57.895 4.48 0.00 45.52 4.94
2673 2787 0.028902 GTCAGTTTGGTGTTCGCCAC 59.971 55.000 4.48 0.00 43.74 5.01
2674 2788 0.393132 TGTCAGTTTGGTGTTCGCCA 60.393 50.000 0.58 0.58 36.62 5.69
2675 2789 0.028902 GTGTCAGTTTGGTGTTCGCC 59.971 55.000 0.00 0.00 0.00 5.54
2676 2790 0.315869 CGTGTCAGTTTGGTGTTCGC 60.316 55.000 0.00 0.00 0.00 4.70
2677 2791 0.315869 GCGTGTCAGTTTGGTGTTCG 60.316 55.000 0.00 0.00 0.00 3.95
2678 2792 0.730265 TGCGTGTCAGTTTGGTGTTC 59.270 50.000 0.00 0.00 0.00 3.18
2679 2793 0.450184 GTGCGTGTCAGTTTGGTGTT 59.550 50.000 0.00 0.00 0.00 3.32
2680 2794 0.392461 AGTGCGTGTCAGTTTGGTGT 60.392 50.000 0.00 0.00 0.00 4.16
2681 2795 0.304705 GAGTGCGTGTCAGTTTGGTG 59.695 55.000 0.00 0.00 0.00 4.17
2682 2796 1.151777 CGAGTGCGTGTCAGTTTGGT 61.152 55.000 0.00 0.00 0.00 3.67
2683 2797 1.564622 CGAGTGCGTGTCAGTTTGG 59.435 57.895 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.