Multiple sequence alignment - TraesCS3A01G273500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G273500 chr3A 100.000 5940 0 0 1 5940 502397829 502403768 0.000000e+00 10970
1 TraesCS3A01G273500 chr3D 93.793 5252 207 48 750 5935 378239071 378244269 0.000000e+00 7782
2 TraesCS3A01G273500 chr3D 90.105 475 29 6 1 471 378238619 378239079 8.520000e-168 601
3 TraesCS3A01G273500 chr3B 94.037 4511 182 32 750 5224 493162756 493167215 0.000000e+00 6759
4 TraesCS3A01G273500 chr3B 84.509 794 50 35 4971 5731 493273957 493274710 0.000000e+00 717
5 TraesCS3A01G273500 chr3B 83.712 749 65 27 5224 5936 493167296 493168023 0.000000e+00 654
6 TraesCS3A01G273500 chr3B 91.156 441 34 3 1 437 493159677 493160116 1.430000e-165 593
7 TraesCS3A01G273500 chr3B 89.630 135 8 2 5803 5933 493274732 493274864 3.680000e-37 167
8 TraesCS3A01G273500 chr3B 95.385 65 3 0 2102 2166 493164165 493164229 2.930000e-18 104
9 TraesCS3A01G273500 chr5A 93.624 298 19 0 463 760 480515792 480516089 4.220000e-121 446
10 TraesCS3A01G273500 chr5A 94.755 286 15 0 470 755 529930684 529930969 4.220000e-121 446
11 TraesCS3A01G273500 chr5A 94.138 290 16 1 466 755 41430188 41430476 1.960000e-119 440
12 TraesCS3A01G273500 chr5A 93.471 291 18 1 465 755 614361489 614361778 1.180000e-116 431
13 TraesCS3A01G273500 chr5A 93.426 289 19 0 470 758 496172622 496172334 4.250000e-116 429
14 TraesCS3A01G273500 chr7B 93.471 291 19 0 468 758 208341705 208341995 3.290000e-117 433
15 TraesCS3A01G273500 chr6A 93.426 289 19 0 467 755 191845093 191845381 4.250000e-116 429
16 TraesCS3A01G273500 chr2B 93.706 286 18 0 470 755 612070887 612071172 4.250000e-116 429
17 TraesCS3A01G273500 chr2B 93.706 286 18 0 470 755 612077203 612077488 4.250000e-116 429


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G273500 chr3A 502397829 502403768 5939 False 10970.0 10970 100.0000 1 5940 1 chr3A.!!$F1 5939
1 TraesCS3A01G273500 chr3D 378238619 378244269 5650 False 4191.5 7782 91.9490 1 5935 2 chr3D.!!$F1 5934
2 TraesCS3A01G273500 chr3B 493159677 493168023 8346 False 2027.5 6759 91.0725 1 5936 4 chr3B.!!$F1 5935
3 TraesCS3A01G273500 chr3B 493273957 493274864 907 False 442.0 717 87.0695 4971 5933 2 chr3B.!!$F2 962

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 3435 0.032540 CATGACCTCGATGCGATCCA 59.967 55.000 0.0 0.0 34.61 3.41 F
934 3566 0.178992 CTCTGCAACCCTTTCCCACA 60.179 55.000 0.0 0.0 0.00 4.17 F
935 3567 0.467290 TCTGCAACCCTTTCCCACAC 60.467 55.000 0.0 0.0 0.00 3.82 F
971 3603 0.594110 TCAAATTCAAACCCCGTCGC 59.406 50.000 0.0 0.0 0.00 5.19 F
1437 4075 0.668706 CGAGTCTGGTGCTTCTGGTG 60.669 60.000 0.0 0.0 0.00 4.17 F
1949 4587 1.285950 CGTCGAGTGGTGCTCTTCA 59.714 57.895 0.0 0.0 41.98 3.02 F
2682 5320 1.985473 AAGCACAATCTGTCCTTGCA 58.015 45.000 0.0 0.0 35.57 4.08 F
4110 6760 1.910722 GCCTTCTCCTGATCTGCCA 59.089 57.895 0.0 0.0 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 4873 0.536687 TAGCTATCGACCTCCCACCG 60.537 60.000 0.00 0.0 0.00 4.94 R
2713 5351 2.028112 TGCCAGTTAGCTCCAGTACAAG 60.028 50.000 0.00 0.0 0.00 3.16 R
2860 5498 3.955524 TTGGGAGGTTTTACAGGAACA 57.044 42.857 0.00 0.0 0.00 3.18 R
2994 5632 4.868734 CGGAGTACCTACAACTTTCCAATC 59.131 45.833 0.00 0.0 0.00 2.67 R
3414 6061 5.937111 AGGGAAAACATGTGTGTAAGTAGT 58.063 37.500 0.00 0.0 37.67 2.73 R
3617 6265 2.504175 GCCCCTAGTTGTATTCCAGTGA 59.496 50.000 0.00 0.0 0.00 3.41 R
4158 6808 1.228429 TCTTTTCCTTGCCCCACCG 60.228 57.895 0.00 0.0 0.00 4.94 R
4947 7613 0.238553 GTGGAAGAAGCGCCAGAAAC 59.761 55.000 2.29 0.0 34.22 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 3.549794 AGATGTGCCCTTCTTGATTAGC 58.450 45.455 0.00 0.00 0.00 3.09
115 116 0.618458 TTCTTGATTAGCCGTGGCCT 59.382 50.000 7.39 0.00 43.17 5.19
131 132 3.381590 GTGGCCTGGACCTGAATTTTATC 59.618 47.826 3.32 0.00 0.00 1.75
176 177 8.462811 TGAACTGTGATTTACTTTGCTTTGTAA 58.537 29.630 0.00 0.00 0.00 2.41
302 306 2.623878 TAAGAGGCCGTTTGACACAA 57.376 45.000 0.00 0.00 0.00 3.33
350 354 2.094234 GGGGGTTGGATTTGTCAAATCG 60.094 50.000 25.03 0.00 46.45 3.34
430 434 4.199310 CAAAAGAAACTGTGAGACCAGGA 58.801 43.478 0.00 0.00 36.75 3.86
443 3062 1.474879 GACCAGGAGAGTGTAGTGCTC 59.525 57.143 0.00 0.00 0.00 4.26
482 3101 3.181526 CCTTGAGGGCATCTCCAAC 57.818 57.895 0.00 0.00 41.76 3.77
483 3102 0.329261 CCTTGAGGGCATCTCCAACA 59.671 55.000 0.00 0.00 41.76 3.33
484 3103 1.681166 CCTTGAGGGCATCTCCAACAG 60.681 57.143 0.00 0.00 41.76 3.16
485 3104 1.004044 CTTGAGGGCATCTCCAACAGT 59.996 52.381 0.00 0.00 41.76 3.55
486 3105 1.067295 TGAGGGCATCTCCAACAGTT 58.933 50.000 0.00 0.00 41.76 3.16
487 3106 1.271543 TGAGGGCATCTCCAACAGTTG 60.272 52.381 6.28 6.28 41.76 3.16
488 3107 0.773644 AGGGCATCTCCAACAGTTGT 59.226 50.000 12.42 0.00 36.21 3.32
489 3108 0.883833 GGGCATCTCCAACAGTTGTG 59.116 55.000 12.42 5.04 36.21 3.33
490 3109 1.545428 GGGCATCTCCAACAGTTGTGA 60.545 52.381 12.42 10.04 36.21 3.58
491 3110 1.808945 GGCATCTCCAACAGTTGTGAG 59.191 52.381 18.71 18.71 34.01 3.51
492 3111 2.550855 GGCATCTCCAACAGTTGTGAGA 60.551 50.000 24.84 24.84 39.53 3.27
493 3112 3.341823 GCATCTCCAACAGTTGTGAGAT 58.658 45.455 26.21 26.21 42.82 2.75
494 3113 4.507710 GCATCTCCAACAGTTGTGAGATA 58.492 43.478 28.69 15.45 41.50 1.98
495 3114 4.569966 GCATCTCCAACAGTTGTGAGATAG 59.430 45.833 28.69 24.60 41.50 2.08
496 3115 4.808414 TCTCCAACAGTTGTGAGATAGG 57.192 45.455 21.48 3.78 34.36 2.57
497 3116 4.160329 TCTCCAACAGTTGTGAGATAGGT 58.840 43.478 21.48 0.00 34.36 3.08
498 3117 4.021104 TCTCCAACAGTTGTGAGATAGGTG 60.021 45.833 21.48 4.75 34.36 4.00
499 3118 3.646162 TCCAACAGTTGTGAGATAGGTGT 59.354 43.478 12.42 0.00 0.00 4.16
500 3119 4.102524 TCCAACAGTTGTGAGATAGGTGTT 59.897 41.667 12.42 0.00 0.00 3.32
501 3120 4.214119 CCAACAGTTGTGAGATAGGTGTTG 59.786 45.833 12.42 5.51 41.79 3.33
502 3121 4.008074 ACAGTTGTGAGATAGGTGTTGG 57.992 45.455 0.00 0.00 0.00 3.77
503 3122 3.391296 ACAGTTGTGAGATAGGTGTTGGT 59.609 43.478 0.00 0.00 0.00 3.67
504 3123 4.591498 ACAGTTGTGAGATAGGTGTTGGTA 59.409 41.667 0.00 0.00 0.00 3.25
505 3124 5.071250 ACAGTTGTGAGATAGGTGTTGGTAA 59.929 40.000 0.00 0.00 0.00 2.85
506 3125 5.995282 CAGTTGTGAGATAGGTGTTGGTAAA 59.005 40.000 0.00 0.00 0.00 2.01
507 3126 6.655003 CAGTTGTGAGATAGGTGTTGGTAAAT 59.345 38.462 0.00 0.00 0.00 1.40
508 3127 7.174946 CAGTTGTGAGATAGGTGTTGGTAAATT 59.825 37.037 0.00 0.00 0.00 1.82
509 3128 7.724061 AGTTGTGAGATAGGTGTTGGTAAATTT 59.276 33.333 0.00 0.00 0.00 1.82
510 3129 7.447374 TGTGAGATAGGTGTTGGTAAATTTG 57.553 36.000 0.00 0.00 0.00 2.32
511 3130 6.072175 TGTGAGATAGGTGTTGGTAAATTTGC 60.072 38.462 0.00 0.00 0.00 3.68
512 3131 5.417580 TGAGATAGGTGTTGGTAAATTTGCC 59.582 40.000 17.60 17.60 0.00 4.52
513 3132 5.329399 AGATAGGTGTTGGTAAATTTGCCA 58.671 37.500 22.45 22.45 41.35 4.92
514 3133 3.744238 AGGTGTTGGTAAATTTGCCAC 57.256 42.857 25.49 19.76 42.80 5.01
515 3134 2.367241 AGGTGTTGGTAAATTTGCCACC 59.633 45.455 25.49 22.16 42.80 4.61
516 3135 2.367241 GGTGTTGGTAAATTTGCCACCT 59.633 45.455 25.49 0.00 42.80 4.00
517 3136 3.574826 GGTGTTGGTAAATTTGCCACCTA 59.425 43.478 25.49 10.46 42.80 3.08
518 3137 4.321675 GGTGTTGGTAAATTTGCCACCTAG 60.322 45.833 25.49 0.00 42.80 3.02
519 3138 3.829601 TGTTGGTAAATTTGCCACCTAGG 59.170 43.478 25.49 7.41 42.80 3.02
520 3139 4.083565 GTTGGTAAATTTGCCACCTAGGA 58.916 43.478 25.49 9.04 42.80 2.94
521 3140 3.692690 TGGTAAATTTGCCACCTAGGAC 58.307 45.455 22.45 4.96 38.05 3.85
522 3141 3.074687 TGGTAAATTTGCCACCTAGGACA 59.925 43.478 22.45 7.83 38.05 4.02
523 3142 4.264172 TGGTAAATTTGCCACCTAGGACAT 60.264 41.667 22.45 0.00 38.05 3.06
524 3143 5.044772 TGGTAAATTTGCCACCTAGGACATA 60.045 40.000 22.45 6.31 38.05 2.29
525 3144 5.889289 GGTAAATTTGCCACCTAGGACATAA 59.111 40.000 17.98 2.46 41.22 1.90
526 3145 6.549736 GGTAAATTTGCCACCTAGGACATAAT 59.450 38.462 17.98 9.80 41.22 1.28
527 3146 6.469782 AAATTTGCCACCTAGGACATAATG 57.530 37.500 17.98 1.22 41.22 1.90
528 3147 4.853468 TTTGCCACCTAGGACATAATGA 57.147 40.909 17.98 0.00 41.22 2.57
529 3148 5.387113 TTTGCCACCTAGGACATAATGAT 57.613 39.130 17.98 0.00 41.22 2.45
530 3149 4.356405 TGCCACCTAGGACATAATGATG 57.644 45.455 17.98 0.00 41.22 3.07
531 3150 3.973305 TGCCACCTAGGACATAATGATGA 59.027 43.478 17.98 0.00 41.22 2.92
532 3151 4.598807 TGCCACCTAGGACATAATGATGAT 59.401 41.667 17.98 0.00 41.22 2.45
533 3152 4.940046 GCCACCTAGGACATAATGATGATG 59.060 45.833 17.98 0.00 41.22 3.07
534 3153 5.513788 GCCACCTAGGACATAATGATGATGT 60.514 44.000 17.98 0.00 41.22 3.06
535 3154 5.936372 CCACCTAGGACATAATGATGATGTG 59.064 44.000 17.98 0.00 41.22 3.21
536 3155 5.936372 CACCTAGGACATAATGATGATGTGG 59.064 44.000 17.98 0.00 37.65 4.17
537 3156 5.608437 ACCTAGGACATAATGATGATGTGGT 59.392 40.000 17.98 0.00 37.65 4.16
538 3157 6.787458 ACCTAGGACATAATGATGATGTGGTA 59.213 38.462 17.98 0.00 37.65 3.25
539 3158 7.459125 ACCTAGGACATAATGATGATGTGGTAT 59.541 37.037 17.98 0.00 37.65 2.73
540 3159 7.767659 CCTAGGACATAATGATGATGTGGTATG 59.232 40.741 1.05 0.00 37.65 2.39
541 3160 7.083062 AGGACATAATGATGATGTGGTATGT 57.917 36.000 0.00 0.00 37.65 2.29
542 3161 8.206126 AGGACATAATGATGATGTGGTATGTA 57.794 34.615 0.00 0.00 37.65 2.29
543 3162 8.829746 AGGACATAATGATGATGTGGTATGTAT 58.170 33.333 0.00 0.00 37.65 2.29
544 3163 9.453572 GGACATAATGATGATGTGGTATGTATT 57.546 33.333 0.00 0.00 37.65 1.89
552 3171 9.844257 TGATGATGTGGTATGTATTAAATGTGA 57.156 29.630 0.00 0.00 0.00 3.58
555 3174 9.898152 TGATGTGGTATGTATTAAATGTGAAGA 57.102 29.630 0.00 0.00 0.00 2.87
558 3177 9.599866 TGTGGTATGTATTAAATGTGAAGAGAG 57.400 33.333 0.00 0.00 0.00 3.20
559 3178 9.817809 GTGGTATGTATTAAATGTGAAGAGAGA 57.182 33.333 0.00 0.00 0.00 3.10
561 3180 8.983724 GGTATGTATTAAATGTGAAGAGAGAGC 58.016 37.037 0.00 0.00 0.00 4.09
562 3181 9.534565 GTATGTATTAAATGTGAAGAGAGAGCA 57.465 33.333 0.00 0.00 0.00 4.26
564 3183 8.846943 TGTATTAAATGTGAAGAGAGAGCAAA 57.153 30.769 0.00 0.00 0.00 3.68
565 3184 8.939929 TGTATTAAATGTGAAGAGAGAGCAAAG 58.060 33.333 0.00 0.00 0.00 2.77
566 3185 7.992754 ATTAAATGTGAAGAGAGAGCAAAGT 57.007 32.000 0.00 0.00 0.00 2.66
567 3186 7.807977 TTAAATGTGAAGAGAGAGCAAAGTT 57.192 32.000 0.00 0.00 0.00 2.66
568 3187 5.686159 AATGTGAAGAGAGAGCAAAGTTG 57.314 39.130 0.00 0.00 0.00 3.16
569 3188 4.142609 TGTGAAGAGAGAGCAAAGTTGT 57.857 40.909 0.00 0.00 0.00 3.32
570 3189 5.276461 TGTGAAGAGAGAGCAAAGTTGTA 57.724 39.130 0.00 0.00 0.00 2.41
571 3190 5.858381 TGTGAAGAGAGAGCAAAGTTGTAT 58.142 37.500 0.00 0.00 0.00 2.29
572 3191 5.698089 TGTGAAGAGAGAGCAAAGTTGTATG 59.302 40.000 0.00 0.00 0.00 2.39
573 3192 5.698545 GTGAAGAGAGAGCAAAGTTGTATGT 59.301 40.000 0.00 0.00 0.00 2.29
574 3193 6.868864 GTGAAGAGAGAGCAAAGTTGTATGTA 59.131 38.462 0.00 0.00 0.00 2.29
575 3194 7.062839 GTGAAGAGAGAGCAAAGTTGTATGTAG 59.937 40.741 0.00 0.00 0.00 2.74
576 3195 6.842437 AGAGAGAGCAAAGTTGTATGTAGA 57.158 37.500 0.00 0.00 0.00 2.59
577 3196 7.416964 AGAGAGAGCAAAGTTGTATGTAGAT 57.583 36.000 0.00 0.00 0.00 1.98
578 3197 7.846066 AGAGAGAGCAAAGTTGTATGTAGATT 58.154 34.615 0.00 0.00 0.00 2.40
579 3198 8.972127 AGAGAGAGCAAAGTTGTATGTAGATTA 58.028 33.333 0.00 0.00 0.00 1.75
580 3199 9.587772 GAGAGAGCAAAGTTGTATGTAGATTAA 57.412 33.333 0.00 0.00 0.00 1.40
581 3200 9.372369 AGAGAGCAAAGTTGTATGTAGATTAAC 57.628 33.333 0.00 0.00 0.00 2.01
582 3201 8.494016 AGAGCAAAGTTGTATGTAGATTAACC 57.506 34.615 0.00 0.00 0.00 2.85
583 3202 8.100791 AGAGCAAAGTTGTATGTAGATTAACCA 58.899 33.333 0.00 0.00 0.00 3.67
584 3203 8.630054 AGCAAAGTTGTATGTAGATTAACCAA 57.370 30.769 0.00 0.00 0.00 3.67
585 3204 8.512138 AGCAAAGTTGTATGTAGATTAACCAAC 58.488 33.333 0.00 0.00 0.00 3.77
586 3205 8.293867 GCAAAGTTGTATGTAGATTAACCAACA 58.706 33.333 0.00 0.00 0.00 3.33
589 3208 8.331730 AGTTGTATGTAGATTAACCAACAACC 57.668 34.615 10.42 0.00 40.88 3.77
590 3209 8.161425 AGTTGTATGTAGATTAACCAACAACCT 58.839 33.333 10.42 0.00 40.88 3.50
591 3210 8.789762 GTTGTATGTAGATTAACCAACAACCTT 58.210 33.333 0.00 0.00 37.67 3.50
592 3211 8.927675 TGTATGTAGATTAACCAACAACCTTT 57.072 30.769 0.00 0.00 0.00 3.11
593 3212 8.788806 TGTATGTAGATTAACCAACAACCTTTG 58.211 33.333 0.00 0.00 0.00 2.77
594 3213 6.079424 TGTAGATTAACCAACAACCTTTGC 57.921 37.500 0.00 0.00 0.00 3.68
595 3214 5.594725 TGTAGATTAACCAACAACCTTTGCA 59.405 36.000 0.00 0.00 0.00 4.08
596 3215 4.944048 AGATTAACCAACAACCTTTGCAC 58.056 39.130 0.00 0.00 0.00 4.57
597 3216 4.404073 AGATTAACCAACAACCTTTGCACA 59.596 37.500 0.00 0.00 0.00 4.57
598 3217 4.537135 TTAACCAACAACCTTTGCACAA 57.463 36.364 0.00 0.00 0.00 3.33
599 3218 2.671130 ACCAACAACCTTTGCACAAG 57.329 45.000 0.00 0.00 0.00 3.16
600 3219 1.289276 CCAACAACCTTTGCACAAGC 58.711 50.000 0.00 0.00 42.57 4.01
601 3220 1.134729 CCAACAACCTTTGCACAAGCT 60.135 47.619 0.00 0.00 42.74 3.74
602 3221 2.195922 CAACAACCTTTGCACAAGCTC 58.804 47.619 0.00 0.00 42.74 4.09
603 3222 0.746659 ACAACCTTTGCACAAGCTCC 59.253 50.000 0.00 0.00 42.74 4.70
604 3223 0.746063 CAACCTTTGCACAAGCTCCA 59.254 50.000 0.00 0.00 42.74 3.86
605 3224 1.136695 CAACCTTTGCACAAGCTCCAA 59.863 47.619 0.00 0.00 42.74 3.53
606 3225 1.035139 ACCTTTGCACAAGCTCCAAG 58.965 50.000 0.00 0.00 42.74 3.61
607 3226 0.316204 CCTTTGCACAAGCTCCAAGG 59.684 55.000 0.00 0.00 42.74 3.61
608 3227 1.035139 CTTTGCACAAGCTCCAAGGT 58.965 50.000 0.00 0.00 42.74 3.50
609 3228 0.746063 TTTGCACAAGCTCCAAGGTG 59.254 50.000 0.00 0.00 42.74 4.00
610 3229 0.106769 TTGCACAAGCTCCAAGGTGA 60.107 50.000 0.00 0.00 42.74 4.02
611 3230 0.106769 TGCACAAGCTCCAAGGTGAA 60.107 50.000 0.00 0.00 42.74 3.18
612 3231 1.032014 GCACAAGCTCCAAGGTGAAA 58.968 50.000 0.00 0.00 37.91 2.69
613 3232 1.615392 GCACAAGCTCCAAGGTGAAAT 59.385 47.619 0.00 0.00 37.91 2.17
614 3233 2.819608 GCACAAGCTCCAAGGTGAAATA 59.180 45.455 0.00 0.00 37.91 1.40
615 3234 3.119708 GCACAAGCTCCAAGGTGAAATAG 60.120 47.826 0.00 0.00 37.91 1.73
616 3235 4.326826 CACAAGCTCCAAGGTGAAATAGA 58.673 43.478 0.00 0.00 33.16 1.98
617 3236 4.394300 CACAAGCTCCAAGGTGAAATAGAG 59.606 45.833 0.00 0.00 33.16 2.43
618 3237 4.287067 ACAAGCTCCAAGGTGAAATAGAGA 59.713 41.667 0.00 0.00 0.00 3.10
619 3238 4.751767 AGCTCCAAGGTGAAATAGAGAG 57.248 45.455 0.00 0.00 0.00 3.20
620 3239 4.357325 AGCTCCAAGGTGAAATAGAGAGA 58.643 43.478 0.00 0.00 0.00 3.10
621 3240 4.780021 AGCTCCAAGGTGAAATAGAGAGAA 59.220 41.667 0.00 0.00 0.00 2.87
622 3241 5.249393 AGCTCCAAGGTGAAATAGAGAGAAA 59.751 40.000 0.00 0.00 0.00 2.52
623 3242 6.069731 AGCTCCAAGGTGAAATAGAGAGAAAT 60.070 38.462 0.00 0.00 0.00 2.17
624 3243 6.259829 GCTCCAAGGTGAAATAGAGAGAAATC 59.740 42.308 0.00 0.00 0.00 2.17
625 3244 7.257790 TCCAAGGTGAAATAGAGAGAAATCA 57.742 36.000 0.00 0.00 0.00 2.57
626 3245 7.106239 TCCAAGGTGAAATAGAGAGAAATCAC 58.894 38.462 0.00 0.00 37.14 3.06
627 3246 6.881065 CCAAGGTGAAATAGAGAGAAATCACA 59.119 38.462 6.12 0.00 39.06 3.58
628 3247 7.555554 CCAAGGTGAAATAGAGAGAAATCACAT 59.444 37.037 6.12 0.00 39.06 3.21
629 3248 8.954350 CAAGGTGAAATAGAGAGAAATCACATT 58.046 33.333 6.12 2.44 40.93 2.71
630 3249 9.525826 AAGGTGAAATAGAGAGAAATCACATTT 57.474 29.630 6.12 0.00 38.24 2.32
676 3295 9.920946 AATAGTTTACATACAATCCATTGGAGT 57.079 29.630 11.78 5.57 41.96 3.85
678 3297 8.964476 AGTTTACATACAATCCATTGGAGTAG 57.036 34.615 11.78 5.97 41.96 2.57
679 3298 8.548877 AGTTTACATACAATCCATTGGAGTAGT 58.451 33.333 11.78 11.27 41.96 2.73
680 3299 9.174166 GTTTACATACAATCCATTGGAGTAGTT 57.826 33.333 11.78 0.00 41.96 2.24
681 3300 8.731275 TTACATACAATCCATTGGAGTAGTTG 57.269 34.615 11.78 12.48 41.96 3.16
682 3301 6.721318 ACATACAATCCATTGGAGTAGTTGT 58.279 36.000 20.52 20.52 41.96 3.32
683 3302 7.857456 ACATACAATCCATTGGAGTAGTTGTA 58.143 34.615 22.60 22.60 41.96 2.41
684 3303 8.494433 ACATACAATCCATTGGAGTAGTTGTAT 58.506 33.333 24.17 24.17 41.16 2.29
685 3304 8.777413 CATACAATCCATTGGAGTAGTTGTATG 58.223 37.037 31.51 31.51 45.18 2.39
686 3305 6.957631 ACAATCCATTGGAGTAGTTGTATGA 58.042 36.000 16.99 0.00 41.96 2.15
687 3306 7.577303 ACAATCCATTGGAGTAGTTGTATGAT 58.423 34.615 16.99 0.00 41.96 2.45
688 3307 8.713971 ACAATCCATTGGAGTAGTTGTATGATA 58.286 33.333 16.99 0.00 41.96 2.15
689 3308 9.212641 CAATCCATTGGAGTAGTTGTATGATAG 57.787 37.037 11.78 0.00 34.05 2.08
690 3309 6.759272 TCCATTGGAGTAGTTGTATGATAGC 58.241 40.000 0.00 0.00 0.00 2.97
691 3310 6.554982 TCCATTGGAGTAGTTGTATGATAGCT 59.445 38.462 0.00 0.00 0.00 3.32
692 3311 7.071196 TCCATTGGAGTAGTTGTATGATAGCTT 59.929 37.037 0.00 0.00 0.00 3.74
693 3312 7.172190 CCATTGGAGTAGTTGTATGATAGCTTG 59.828 40.741 0.00 0.00 0.00 4.01
694 3313 6.791867 TGGAGTAGTTGTATGATAGCTTGT 57.208 37.500 0.00 0.00 0.00 3.16
695 3314 7.182817 TGGAGTAGTTGTATGATAGCTTGTT 57.817 36.000 0.00 0.00 0.00 2.83
696 3315 7.041721 TGGAGTAGTTGTATGATAGCTTGTTG 58.958 38.462 0.00 0.00 0.00 3.33
697 3316 6.480320 GGAGTAGTTGTATGATAGCTTGTTGG 59.520 42.308 0.00 0.00 0.00 3.77
698 3317 6.947464 AGTAGTTGTATGATAGCTTGTTGGT 58.053 36.000 0.00 0.00 0.00 3.67
699 3318 7.394816 AGTAGTTGTATGATAGCTTGTTGGTT 58.605 34.615 0.00 0.00 0.00 3.67
700 3319 6.500684 AGTTGTATGATAGCTTGTTGGTTG 57.499 37.500 0.00 0.00 0.00 3.77
701 3320 6.237901 AGTTGTATGATAGCTTGTTGGTTGA 58.762 36.000 0.00 0.00 0.00 3.18
702 3321 6.886459 AGTTGTATGATAGCTTGTTGGTTGAT 59.114 34.615 0.00 0.00 0.00 2.57
703 3322 6.682423 TGTATGATAGCTTGTTGGTTGATG 57.318 37.500 0.00 0.00 0.00 3.07
704 3323 6.413892 TGTATGATAGCTTGTTGGTTGATGA 58.586 36.000 0.00 0.00 0.00 2.92
705 3324 7.056006 TGTATGATAGCTTGTTGGTTGATGAT 58.944 34.615 0.00 0.00 0.00 2.45
706 3325 8.210265 TGTATGATAGCTTGTTGGTTGATGATA 58.790 33.333 0.00 0.00 0.00 2.15
707 3326 9.224267 GTATGATAGCTTGTTGGTTGATGATAT 57.776 33.333 0.00 0.00 0.00 1.63
708 3327 7.500720 TGATAGCTTGTTGGTTGATGATATG 57.499 36.000 0.00 0.00 0.00 1.78
709 3328 7.281841 TGATAGCTTGTTGGTTGATGATATGA 58.718 34.615 0.00 0.00 0.00 2.15
710 3329 7.774625 TGATAGCTTGTTGGTTGATGATATGAA 59.225 33.333 0.00 0.00 0.00 2.57
711 3330 6.199937 AGCTTGTTGGTTGATGATATGAAC 57.800 37.500 0.00 0.00 0.00 3.18
712 3331 5.711506 AGCTTGTTGGTTGATGATATGAACA 59.288 36.000 0.00 0.00 0.00 3.18
713 3332 6.379133 AGCTTGTTGGTTGATGATATGAACAT 59.621 34.615 0.00 0.00 0.00 2.71
714 3333 7.037438 GCTTGTTGGTTGATGATATGAACATT 58.963 34.615 0.00 0.00 0.00 2.71
715 3334 7.546667 GCTTGTTGGTTGATGATATGAACATTT 59.453 33.333 0.00 0.00 0.00 2.32
716 3335 9.426837 CTTGTTGGTTGATGATATGAACATTTT 57.573 29.630 0.00 0.00 0.00 1.82
718 3337 9.853555 TGTTGGTTGATGATATGAACATTTTAC 57.146 29.630 0.00 0.00 0.00 2.01
719 3338 9.301153 GTTGGTTGATGATATGAACATTTTACC 57.699 33.333 0.00 0.00 0.00 2.85
720 3339 8.586879 TGGTTGATGATATGAACATTTTACCA 57.413 30.769 0.00 0.00 34.14 3.25
721 3340 9.029368 TGGTTGATGATATGAACATTTTACCAA 57.971 29.630 0.00 0.00 33.90 3.67
722 3341 9.301153 GGTTGATGATATGAACATTTTACCAAC 57.699 33.333 0.00 0.00 32.19 3.77
723 3342 9.853555 GTTGATGATATGAACATTTTACCAACA 57.146 29.630 0.00 0.00 32.70 3.33
741 3360 9.751542 TTACCAACAAAAATAACATACAACCTG 57.248 29.630 0.00 0.00 0.00 4.00
742 3361 7.787028 ACCAACAAAAATAACATACAACCTGT 58.213 30.769 0.00 0.00 0.00 4.00
743 3362 8.261522 ACCAACAAAAATAACATACAACCTGTT 58.738 29.630 0.00 0.00 39.93 3.16
744 3363 8.547069 CCAACAAAAATAACATACAACCTGTTG 58.453 33.333 8.42 8.42 45.58 3.33
745 3364 9.307121 CAACAAAAATAACATACAACCTGTTGA 57.693 29.630 16.41 1.48 41.36 3.18
746 3365 9.877178 AACAAAAATAACATACAACCTGTTGAA 57.123 25.926 16.41 0.00 42.93 2.69
747 3366 9.528018 ACAAAAATAACATACAACCTGTTGAAG 57.472 29.630 16.41 7.96 42.93 3.02
748 3367 9.743057 CAAAAATAACATACAACCTGTTGAAGA 57.257 29.630 16.41 2.40 42.93 2.87
750 3369 9.912634 AAAATAACATACAACCTGTTGAAGATG 57.087 29.630 16.41 16.04 42.93 2.90
751 3370 5.376854 AACATACAACCTGTTGAAGATGC 57.623 39.130 16.41 0.00 42.93 3.91
752 3371 3.758554 ACATACAACCTGTTGAAGATGCC 59.241 43.478 16.41 0.00 42.93 4.40
753 3372 1.620822 ACAACCTGTTGAAGATGCCC 58.379 50.000 16.41 0.00 42.93 5.36
754 3373 1.145738 ACAACCTGTTGAAGATGCCCT 59.854 47.619 16.41 0.00 42.93 5.19
755 3374 1.542915 CAACCTGTTGAAGATGCCCTG 59.457 52.381 3.96 0.00 42.93 4.45
756 3375 1.067295 ACCTGTTGAAGATGCCCTGA 58.933 50.000 0.00 0.00 0.00 3.86
757 3376 1.004044 ACCTGTTGAAGATGCCCTGAG 59.996 52.381 0.00 0.00 0.00 3.35
758 3377 1.280133 CCTGTTGAAGATGCCCTGAGA 59.720 52.381 0.00 0.00 0.00 3.27
759 3378 2.290514 CCTGTTGAAGATGCCCTGAGAA 60.291 50.000 0.00 0.00 0.00 2.87
760 3379 2.746362 CTGTTGAAGATGCCCTGAGAAC 59.254 50.000 0.00 0.00 0.00 3.01
761 3380 2.106338 TGTTGAAGATGCCCTGAGAACA 59.894 45.455 0.00 0.00 0.00 3.18
762 3381 2.479566 TGAAGATGCCCTGAGAACAC 57.520 50.000 0.00 0.00 0.00 3.32
763 3382 1.699083 TGAAGATGCCCTGAGAACACA 59.301 47.619 0.00 0.00 0.00 3.72
813 3432 4.350620 GCATGACCTCGATGCGAT 57.649 55.556 0.00 0.00 37.10 4.58
814 3433 2.148687 GCATGACCTCGATGCGATC 58.851 57.895 0.00 0.00 37.10 3.69
816 3435 0.032540 CATGACCTCGATGCGATCCA 59.967 55.000 0.00 0.00 34.61 3.41
817 3436 0.752658 ATGACCTCGATGCGATCCAA 59.247 50.000 0.00 0.00 34.61 3.53
818 3437 0.534873 TGACCTCGATGCGATCCAAA 59.465 50.000 0.00 0.00 34.61 3.28
819 3438 1.066502 TGACCTCGATGCGATCCAAAA 60.067 47.619 0.00 0.00 34.61 2.44
909 3540 1.205485 CTCTCGCATCGCACTACAGC 61.205 60.000 0.00 0.00 0.00 4.40
934 3566 0.178992 CTCTGCAACCCTTTCCCACA 60.179 55.000 0.00 0.00 0.00 4.17
935 3567 0.467290 TCTGCAACCCTTTCCCACAC 60.467 55.000 0.00 0.00 0.00 3.82
936 3568 1.795170 CTGCAACCCTTTCCCACACG 61.795 60.000 0.00 0.00 0.00 4.49
937 3569 2.561037 GCAACCCTTTCCCACACGG 61.561 63.158 0.00 0.00 0.00 4.94
971 3603 0.594110 TCAAATTCAAACCCCGTCGC 59.406 50.000 0.00 0.00 0.00 5.19
1242 3880 2.433318 GACGGCAAGAGCTCGCTT 60.433 61.111 8.37 0.00 41.70 4.68
1437 4075 0.668706 CGAGTCTGGTGCTTCTGGTG 60.669 60.000 0.00 0.00 0.00 4.17
1440 4078 1.701847 AGTCTGGTGCTTCTGGTGAAT 59.298 47.619 0.00 0.00 0.00 2.57
1481 4119 3.053291 GGGTTGTGCGGCGAATCA 61.053 61.111 12.98 2.62 0.00 2.57
1683 4321 2.998670 GGTTTCGTGCTTAAGGTAGGTC 59.001 50.000 4.29 0.00 0.00 3.85
1785 4423 6.130569 TCAACAAAGGGTAGTGGTTGTTTAT 58.869 36.000 0.00 0.00 41.10 1.40
1791 4429 5.557866 AGGGTAGTGGTTGTTTATTCTGTC 58.442 41.667 0.00 0.00 0.00 3.51
1949 4587 1.285950 CGTCGAGTGGTGCTCTTCA 59.714 57.895 0.00 0.00 41.98 3.02
2082 4720 5.779922 TCAGTACACTGTGAGGTTCAATAC 58.220 41.667 15.86 3.96 44.12 1.89
2118 4756 8.519526 TGTAGATTGTGAAATGAAATTGGTACC 58.480 33.333 4.43 4.43 36.10 3.34
2168 4806 9.709495 TTTTGATCATTTCAAGGAATTTACTGG 57.291 29.630 0.00 0.00 44.90 4.00
2175 4813 9.880157 CATTTCAAGGAATTTACTGGAATGAAT 57.120 29.630 0.00 0.00 28.56 2.57
2181 4819 7.614494 AGGAATTTACTGGAATGAATTTGGTG 58.386 34.615 0.00 0.00 0.00 4.17
2183 4821 7.877612 GGAATTTACTGGAATGAATTTGGTGTT 59.122 33.333 0.00 0.00 0.00 3.32
2189 4827 4.403752 TGGAATGAATTTGGTGTTGTGTCA 59.596 37.500 0.00 0.00 0.00 3.58
2191 4829 6.266330 TGGAATGAATTTGGTGTTGTGTCATA 59.734 34.615 0.00 0.00 0.00 2.15
2194 4832 6.023357 TGAATTTGGTGTTGTGTCATATGG 57.977 37.500 2.13 0.00 0.00 2.74
2201 4839 6.007076 TGGTGTTGTGTCATATGGTATTGTT 58.993 36.000 2.13 0.00 0.00 2.83
2220 4858 5.534207 TGTTGCCTGTTTTGATCATTTCT 57.466 34.783 0.00 0.00 0.00 2.52
2235 4873 8.433421 TGATCATTTCTAGGAATTTACCGAAC 57.567 34.615 0.00 0.00 34.73 3.95
2682 5320 1.985473 AAGCACAATCTGTCCTTGCA 58.015 45.000 0.00 0.00 35.57 4.08
2860 5498 3.336568 AGCTGGCCTGGCATCAGT 61.337 61.111 22.05 7.46 39.31 3.41
2881 5519 4.141018 AGTGTTCCTGTAAAACCTCCCAAT 60.141 41.667 0.00 0.00 0.00 3.16
2993 5631 6.073003 GGTGTCAAGAGAGAAGGTACAATTTG 60.073 42.308 0.00 0.00 0.00 2.32
2994 5632 5.997746 TGTCAAGAGAGAAGGTACAATTTGG 59.002 40.000 0.78 0.00 0.00 3.28
3393 6040 5.543507 TTCTAAACCAAATGTGTGCCATT 57.456 34.783 0.00 0.00 45.81 3.16
3394 6041 6.656632 TTCTAAACCAAATGTGTGCCATTA 57.343 33.333 0.00 0.00 43.04 1.90
3395 6042 6.656632 TCTAAACCAAATGTGTGCCATTAA 57.343 33.333 0.00 0.00 43.04 1.40
3414 6061 7.526359 GCCATTAAAAGTGTTTGGATCCCTTAA 60.526 37.037 9.90 0.00 0.00 1.85
3415 6062 7.817478 CCATTAAAAGTGTTTGGATCCCTTAAC 59.183 37.037 9.90 11.39 0.00 2.01
3416 6063 8.585018 CATTAAAAGTGTTTGGATCCCTTAACT 58.415 33.333 9.90 5.38 0.00 2.24
3677 6325 6.897966 AGAAGTTCTTGGAGTACATCAGGATA 59.102 38.462 0.00 0.00 0.00 2.59
4110 6760 1.910722 GCCTTCTCCTGATCTGCCA 59.089 57.895 0.00 0.00 0.00 4.92
4236 6886 2.435372 ACAATGTGACTGTTGGTGGT 57.565 45.000 6.32 0.00 0.00 4.16
4281 6931 3.005897 GGTCATCGTACTCCAGCATATGT 59.994 47.826 4.29 0.00 0.00 2.29
4284 6934 3.728076 TCGTACTCCAGCATATGTTCC 57.272 47.619 4.29 0.00 0.00 3.62
4299 6949 6.312426 GCATATGTTCCATATCTGCTCAGTAC 59.688 42.308 4.29 0.00 0.00 2.73
4353 7003 3.703052 GGAATGTTCCCTCTGCATTGAAT 59.297 43.478 0.09 0.00 41.62 2.57
4381 7031 6.951198 TGGATTCTTAACACCATGGTATGTTT 59.049 34.615 21.85 13.59 39.67 2.83
4403 7054 9.046846 TGTTTGAACTATGGGCTATAGCTATAT 57.953 33.333 23.53 16.55 42.12 0.86
4408 7059 9.968870 GAACTATGGGCTATAGCTATATTACAC 57.031 37.037 23.53 8.53 42.12 2.90
4452 7103 3.490348 CCTGGAAGTGAACTGTGGAATT 58.510 45.455 0.00 0.00 0.00 2.17
4461 7112 6.795399 AGTGAACTGTGGAATTTAACTTGTG 58.205 36.000 0.00 0.00 0.00 3.33
4501 7152 4.431809 CTCATCTGCTTAGAAGTCACAGG 58.568 47.826 0.00 0.00 0.00 4.00
4533 7185 8.560576 AATCGTCAGTTCTTTTTATGTTTGTG 57.439 30.769 0.00 0.00 0.00 3.33
4535 7187 7.925993 TCGTCAGTTCTTTTTATGTTTGTGAT 58.074 30.769 0.00 0.00 0.00 3.06
4613 7265 6.055588 TGTCCACTAGGCATAAATTCTAAGC 58.944 40.000 0.00 0.00 33.74 3.09
4646 7310 9.342308 TCAAGAATAACCATTAATCCAGTGATC 57.658 33.333 0.00 0.00 0.00 2.92
4694 7358 3.242123 GCTAGTGCTTGTTGAATAGTCGC 60.242 47.826 0.00 0.00 36.03 5.19
4700 7364 3.242543 GCTTGTTGAATAGTCGCATCCAG 60.243 47.826 0.00 0.00 0.00 3.86
4726 7390 7.377131 GCATGTGAAGTTTTGTTCTCTTCTAAC 59.623 37.037 0.00 0.00 38.52 2.34
4728 7392 7.748847 TGTGAAGTTTTGTTCTCTTCTAACAC 58.251 34.615 0.00 0.00 36.61 3.32
4729 7393 7.606456 TGTGAAGTTTTGTTCTCTTCTAACACT 59.394 33.333 0.00 0.00 36.61 3.55
4730 7394 8.451748 GTGAAGTTTTGTTCTCTTCTAACACTT 58.548 33.333 0.00 0.00 36.61 3.16
4774 7440 3.040099 CCGTGAAAGGTTGTTTTTAGCG 58.960 45.455 0.00 0.00 0.00 4.26
4879 7545 2.099431 GCGCCAGTCTCTGCTGAAG 61.099 63.158 0.00 0.00 38.70 3.02
4947 7613 3.444034 TCACGGACTCTGTAAGGAAGATG 59.556 47.826 0.00 0.00 0.00 2.90
5023 7690 7.392113 CCCCTACAATACAACACAGTTATTGAA 59.608 37.037 8.96 0.00 33.67 2.69
5274 8023 4.905429 TGTGCACAACTCCTATACAACAT 58.095 39.130 19.28 0.00 0.00 2.71
5302 8051 5.160607 TCCATCTTGTTTCAAGATACGGT 57.839 39.130 19.90 1.82 35.39 4.83
5325 8074 3.945285 ACAATTCGTATGTTAGGGCCAAG 59.055 43.478 6.18 0.00 0.00 3.61
5358 8113 1.143684 ACTCAGCATGTGGTCTGGTTT 59.856 47.619 0.00 0.00 37.40 3.27
5415 8196 3.558931 TGAGTATGAATTGGCCACGAT 57.441 42.857 3.88 0.00 0.00 3.73
5418 8199 0.943673 TATGAATTGGCCACGATGCG 59.056 50.000 3.88 0.00 0.00 4.73
5538 8319 0.674895 GTCACCCTGTCACCTGCATC 60.675 60.000 0.00 0.00 0.00 3.91
5552 8333 3.055530 ACCTGCATCAGAAACTAGGTGAG 60.056 47.826 0.00 0.00 37.17 3.51
5553 8334 3.196469 CCTGCATCAGAAACTAGGTGAGA 59.804 47.826 0.00 0.00 32.44 3.27
5554 8335 4.141756 CCTGCATCAGAAACTAGGTGAGAT 60.142 45.833 0.00 0.00 32.44 2.75
5555 8336 4.763073 TGCATCAGAAACTAGGTGAGATG 58.237 43.478 11.16 11.16 35.67 2.90
5556 8337 4.467438 TGCATCAGAAACTAGGTGAGATGA 59.533 41.667 17.00 4.74 34.79 2.92
5557 8338 5.049167 GCATCAGAAACTAGGTGAGATGAG 58.951 45.833 17.00 0.00 34.79 2.90
5558 8339 5.599732 CATCAGAAACTAGGTGAGATGAGG 58.400 45.833 10.33 0.00 34.79 3.86
5559 8340 4.678256 TCAGAAACTAGGTGAGATGAGGT 58.322 43.478 0.00 0.00 0.00 3.85
5560 8341 4.464244 TCAGAAACTAGGTGAGATGAGGTG 59.536 45.833 0.00 0.00 0.00 4.00
5561 8342 4.464244 CAGAAACTAGGTGAGATGAGGTGA 59.536 45.833 0.00 0.00 0.00 4.02
5572 8353 4.224594 TGAGATGAGGTGATTTCTTCTGCT 59.775 41.667 0.00 0.00 31.50 4.24
5576 8357 2.675348 GAGGTGATTTCTTCTGCTTCCG 59.325 50.000 0.00 0.00 0.00 4.30
5588 8369 2.009774 CTGCTTCCGTTCCCAGTTATG 58.990 52.381 0.00 0.00 0.00 1.90
5606 8408 2.489938 TGGTACATGCTTCCCACTTC 57.510 50.000 0.00 0.00 0.00 3.01
5619 8421 5.712446 GCTTCCCACTTCTCTTCCTTTATTT 59.288 40.000 0.00 0.00 0.00 1.40
5638 8440 4.320608 TTTGCAACTGGATTTCCTTGTC 57.679 40.909 0.00 0.00 36.82 3.18
5659 8461 4.022849 GTCACTTAAGCCATGTTTTCTGCT 60.023 41.667 1.29 0.00 35.08 4.24
5662 8464 4.829492 ACTTAAGCCATGTTTTCTGCTCTT 59.171 37.500 1.29 0.00 32.62 2.85
5664 8466 4.677673 AAGCCATGTTTTCTGCTCTTTT 57.322 36.364 0.00 0.00 32.62 2.27
5667 8469 6.350629 AGCCATGTTTTCTGCTCTTTTAAT 57.649 33.333 0.00 0.00 0.00 1.40
5671 8473 8.987890 GCCATGTTTTCTGCTCTTTTAATAAAA 58.012 29.630 0.00 0.00 0.00 1.52
5734 8537 1.691976 TGTCGAGGAATTGGGCGATAT 59.308 47.619 0.00 0.00 35.08 1.63
5768 8571 6.568653 GCTTTCTAGTTCATTTTGGACAGACC 60.569 42.308 0.00 0.00 39.54 3.85
5771 8574 2.887152 AGTTCATTTTGGACAGACCTGC 59.113 45.455 0.00 0.00 39.86 4.85
5836 8639 4.484236 TGGCTCGCTAAAATTGTTTGATG 58.516 39.130 0.00 0.00 0.00 3.07
5905 8712 4.097741 TGACTTGGTTTGTTCATGGTTGAG 59.902 41.667 0.00 0.00 32.27 3.02
5906 8713 4.277476 ACTTGGTTTGTTCATGGTTGAGA 58.723 39.130 0.00 0.00 32.27 3.27
5912 8719 6.095377 GGTTTGTTCATGGTTGAGATTGATC 58.905 40.000 0.00 0.00 32.27 2.92
5936 8743 4.084013 TCTCTTTCGCGTCAATCTTTTTCC 60.084 41.667 5.77 0.00 0.00 3.13
5937 8744 2.981400 TTCGCGTCAATCTTTTTCCC 57.019 45.000 5.77 0.00 0.00 3.97
5938 8745 2.178912 TCGCGTCAATCTTTTTCCCT 57.821 45.000 5.77 0.00 0.00 4.20
5939 8746 2.500229 TCGCGTCAATCTTTTTCCCTT 58.500 42.857 5.77 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.759489 TTTTTCTGGCTAATAACACATGACT 57.241 32.000 0.00 0.00 0.00 3.41
107 108 2.484287 AATTCAGGTCCAGGCCACGG 62.484 60.000 5.01 4.90 0.00 4.94
115 116 4.671831 TGCCAAGATAAAATTCAGGTCCA 58.328 39.130 0.00 0.00 0.00 4.02
131 132 4.508461 TCAACAATTCAGACATGCCAAG 57.492 40.909 0.00 0.00 0.00 3.61
233 237 6.217487 CCTCATATCTAAACCCCCAATCCATA 59.783 42.308 0.00 0.00 0.00 2.74
430 434 1.261480 CCCACAGAGCACTACACTCT 58.739 55.000 0.00 0.00 45.39 3.24
443 3062 1.377725 CAAGCCCAGTAGCCCACAG 60.378 63.158 0.00 0.00 0.00 3.66
471 3090 1.808945 CTCACAACTGTTGGAGATGCC 59.191 52.381 23.15 0.00 32.90 4.40
472 3091 2.771089 TCTCACAACTGTTGGAGATGC 58.229 47.619 24.88 0.00 34.36 3.91
475 3094 4.021104 CACCTATCTCACAACTGTTGGAGA 60.021 45.833 27.94 27.94 39.53 3.71
476 3095 4.248859 CACCTATCTCACAACTGTTGGAG 58.751 47.826 23.15 22.69 34.12 3.86
477 3096 3.646162 ACACCTATCTCACAACTGTTGGA 59.354 43.478 23.15 15.87 34.12 3.53
478 3097 4.008074 ACACCTATCTCACAACTGTTGG 57.992 45.455 23.15 12.79 34.12 3.77
479 3098 4.214119 CCAACACCTATCTCACAACTGTTG 59.786 45.833 18.44 18.44 37.71 3.33
480 3099 4.141482 ACCAACACCTATCTCACAACTGTT 60.141 41.667 0.00 0.00 0.00 3.16
481 3100 3.391296 ACCAACACCTATCTCACAACTGT 59.609 43.478 0.00 0.00 0.00 3.55
482 3101 4.008074 ACCAACACCTATCTCACAACTG 57.992 45.455 0.00 0.00 0.00 3.16
483 3102 5.818678 TTACCAACACCTATCTCACAACT 57.181 39.130 0.00 0.00 0.00 3.16
484 3103 7.448748 AATTTACCAACACCTATCTCACAAC 57.551 36.000 0.00 0.00 0.00 3.32
485 3104 7.523052 GCAAATTTACCAACACCTATCTCACAA 60.523 37.037 0.00 0.00 0.00 3.33
486 3105 6.072175 GCAAATTTACCAACACCTATCTCACA 60.072 38.462 0.00 0.00 0.00 3.58
487 3106 6.322491 GCAAATTTACCAACACCTATCTCAC 58.678 40.000 0.00 0.00 0.00 3.51
488 3107 5.417580 GGCAAATTTACCAACACCTATCTCA 59.582 40.000 2.30 0.00 0.00 3.27
489 3108 5.417580 TGGCAAATTTACCAACACCTATCTC 59.582 40.000 7.73 0.00 31.46 2.75
490 3109 5.185056 GTGGCAAATTTACCAACACCTATCT 59.815 40.000 11.84 0.00 37.79 1.98
491 3110 5.407502 GTGGCAAATTTACCAACACCTATC 58.592 41.667 11.84 0.00 37.79 2.08
492 3111 4.221924 GGTGGCAAATTTACCAACACCTAT 59.778 41.667 18.95 0.00 43.52 2.57
493 3112 3.574826 GGTGGCAAATTTACCAACACCTA 59.425 43.478 18.95 0.00 43.52 3.08
494 3113 2.367241 GGTGGCAAATTTACCAACACCT 59.633 45.455 18.95 0.00 43.52 4.00
495 3114 2.367241 AGGTGGCAAATTTACCAACACC 59.633 45.455 24.37 19.29 46.66 4.16
496 3115 3.744238 AGGTGGCAAATTTACCAACAC 57.256 42.857 24.37 12.47 46.66 3.32
497 3116 3.829601 CCTAGGTGGCAAATTTACCAACA 59.170 43.478 24.37 11.46 46.66 3.33
498 3117 4.082408 GTCCTAGGTGGCAAATTTACCAAC 60.082 45.833 16.58 16.58 44.45 3.77
499 3118 4.083565 GTCCTAGGTGGCAAATTTACCAA 58.916 43.478 11.84 0.00 37.79 3.67
500 3119 3.074687 TGTCCTAGGTGGCAAATTTACCA 59.925 43.478 9.08 6.00 36.94 3.25
501 3120 3.692690 TGTCCTAGGTGGCAAATTTACC 58.307 45.455 9.08 0.00 35.26 2.85
502 3121 7.284489 TCATTATGTCCTAGGTGGCAAATTTAC 59.716 37.037 9.08 0.00 35.26 2.01
503 3122 7.350382 TCATTATGTCCTAGGTGGCAAATTTA 58.650 34.615 9.08 0.00 35.26 1.40
504 3123 6.194235 TCATTATGTCCTAGGTGGCAAATTT 58.806 36.000 9.08 0.00 35.26 1.82
505 3124 5.765510 TCATTATGTCCTAGGTGGCAAATT 58.234 37.500 9.08 0.00 35.26 1.82
506 3125 5.387113 TCATTATGTCCTAGGTGGCAAAT 57.613 39.130 9.08 1.39 35.26 2.32
507 3126 4.853468 TCATTATGTCCTAGGTGGCAAA 57.147 40.909 9.08 0.00 35.26 3.68
508 3127 4.411869 TCATCATTATGTCCTAGGTGGCAA 59.588 41.667 9.08 0.00 34.50 4.52
509 3128 3.973305 TCATCATTATGTCCTAGGTGGCA 59.027 43.478 9.08 7.25 34.50 4.92
510 3129 4.623932 TCATCATTATGTCCTAGGTGGC 57.376 45.455 9.08 1.27 34.50 5.01
511 3130 5.936372 CACATCATCATTATGTCCTAGGTGG 59.064 44.000 9.08 0.00 35.39 4.61
512 3131 5.936372 CCACATCATCATTATGTCCTAGGTG 59.064 44.000 9.08 0.00 35.39 4.00
513 3132 5.608437 ACCACATCATCATTATGTCCTAGGT 59.392 40.000 9.08 0.00 35.39 3.08
514 3133 6.119240 ACCACATCATCATTATGTCCTAGG 57.881 41.667 0.82 0.82 35.39 3.02
515 3134 8.316946 ACATACCACATCATCATTATGTCCTAG 58.683 37.037 0.00 0.00 35.39 3.02
516 3135 8.206126 ACATACCACATCATCATTATGTCCTA 57.794 34.615 0.00 0.00 35.39 2.94
517 3136 7.083062 ACATACCACATCATCATTATGTCCT 57.917 36.000 0.00 0.00 35.39 3.85
518 3137 9.453572 AATACATACCACATCATCATTATGTCC 57.546 33.333 0.00 0.00 35.39 4.02
526 3145 9.844257 TCACATTTAATACATACCACATCATCA 57.156 29.630 0.00 0.00 0.00 3.07
529 3148 9.898152 TCTTCACATTTAATACATACCACATCA 57.102 29.630 0.00 0.00 0.00 3.07
532 3151 9.599866 CTCTCTTCACATTTAATACATACCACA 57.400 33.333 0.00 0.00 0.00 4.17
533 3152 9.817809 TCTCTCTTCACATTTAATACATACCAC 57.182 33.333 0.00 0.00 0.00 4.16
535 3154 8.983724 GCTCTCTCTTCACATTTAATACATACC 58.016 37.037 0.00 0.00 0.00 2.73
536 3155 9.534565 TGCTCTCTCTTCACATTTAATACATAC 57.465 33.333 0.00 0.00 0.00 2.39
538 3157 9.453572 TTTGCTCTCTCTTCACATTTAATACAT 57.546 29.630 0.00 0.00 0.00 2.29
539 3158 8.846943 TTTGCTCTCTCTTCACATTTAATACA 57.153 30.769 0.00 0.00 0.00 2.29
540 3159 8.940952 ACTTTGCTCTCTCTTCACATTTAATAC 58.059 33.333 0.00 0.00 0.00 1.89
541 3160 9.507329 AACTTTGCTCTCTCTTCACATTTAATA 57.493 29.630 0.00 0.00 0.00 0.98
542 3161 7.992754 ACTTTGCTCTCTCTTCACATTTAAT 57.007 32.000 0.00 0.00 0.00 1.40
543 3162 7.283127 ACAACTTTGCTCTCTCTTCACATTTAA 59.717 33.333 0.00 0.00 0.00 1.52
544 3163 6.767902 ACAACTTTGCTCTCTCTTCACATTTA 59.232 34.615 0.00 0.00 0.00 1.40
545 3164 5.591877 ACAACTTTGCTCTCTCTTCACATTT 59.408 36.000 0.00 0.00 0.00 2.32
546 3165 5.128919 ACAACTTTGCTCTCTCTTCACATT 58.871 37.500 0.00 0.00 0.00 2.71
547 3166 4.712476 ACAACTTTGCTCTCTCTTCACAT 58.288 39.130 0.00 0.00 0.00 3.21
548 3167 4.142609 ACAACTTTGCTCTCTCTTCACA 57.857 40.909 0.00 0.00 0.00 3.58
549 3168 5.698545 ACATACAACTTTGCTCTCTCTTCAC 59.301 40.000 0.00 0.00 0.00 3.18
550 3169 5.858381 ACATACAACTTTGCTCTCTCTTCA 58.142 37.500 0.00 0.00 0.00 3.02
551 3170 7.316640 TCTACATACAACTTTGCTCTCTCTTC 58.683 38.462 0.00 0.00 0.00 2.87
552 3171 7.233389 TCTACATACAACTTTGCTCTCTCTT 57.767 36.000 0.00 0.00 0.00 2.85
553 3172 6.842437 TCTACATACAACTTTGCTCTCTCT 57.158 37.500 0.00 0.00 0.00 3.10
554 3173 9.587772 TTAATCTACATACAACTTTGCTCTCTC 57.412 33.333 0.00 0.00 0.00 3.20
555 3174 9.372369 GTTAATCTACATACAACTTTGCTCTCT 57.628 33.333 0.00 0.00 0.00 3.10
556 3175 8.604890 GGTTAATCTACATACAACTTTGCTCTC 58.395 37.037 0.00 0.00 0.00 3.20
557 3176 8.100791 TGGTTAATCTACATACAACTTTGCTCT 58.899 33.333 0.00 0.00 0.00 4.09
558 3177 8.263940 TGGTTAATCTACATACAACTTTGCTC 57.736 34.615 0.00 0.00 0.00 4.26
559 3178 8.512138 GTTGGTTAATCTACATACAACTTTGCT 58.488 33.333 0.00 0.00 35.24 3.91
560 3179 8.293867 TGTTGGTTAATCTACATACAACTTTGC 58.706 33.333 0.00 0.00 37.99 3.68
563 3182 8.789762 GGTTGTTGGTTAATCTACATACAACTT 58.210 33.333 3.82 0.00 40.21 2.66
564 3183 8.161425 AGGTTGTTGGTTAATCTACATACAACT 58.839 33.333 3.82 0.00 40.21 3.16
565 3184 8.331730 AGGTTGTTGGTTAATCTACATACAAC 57.668 34.615 3.82 0.00 39.95 3.32
566 3185 8.927675 AAGGTTGTTGGTTAATCTACATACAA 57.072 30.769 3.82 0.00 0.00 2.41
567 3186 8.788806 CAAAGGTTGTTGGTTAATCTACATACA 58.211 33.333 3.82 0.00 0.00 2.29
568 3187 7.753580 GCAAAGGTTGTTGGTTAATCTACATAC 59.246 37.037 3.82 5.72 0.00 2.39
569 3188 7.448777 TGCAAAGGTTGTTGGTTAATCTACATA 59.551 33.333 3.82 0.00 0.00 2.29
570 3189 6.266558 TGCAAAGGTTGTTGGTTAATCTACAT 59.733 34.615 3.82 0.00 0.00 2.29
571 3190 5.594725 TGCAAAGGTTGTTGGTTAATCTACA 59.405 36.000 0.00 0.00 0.00 2.74
572 3191 5.918576 GTGCAAAGGTTGTTGGTTAATCTAC 59.081 40.000 0.00 0.00 0.00 2.59
573 3192 5.594725 TGTGCAAAGGTTGTTGGTTAATCTA 59.405 36.000 0.00 0.00 0.00 1.98
574 3193 4.404073 TGTGCAAAGGTTGTTGGTTAATCT 59.596 37.500 0.00 0.00 0.00 2.40
575 3194 4.688021 TGTGCAAAGGTTGTTGGTTAATC 58.312 39.130 0.00 0.00 0.00 1.75
576 3195 4.744795 TGTGCAAAGGTTGTTGGTTAAT 57.255 36.364 0.00 0.00 0.00 1.40
577 3196 4.499183 CTTGTGCAAAGGTTGTTGGTTAA 58.501 39.130 0.00 0.00 0.00 2.01
578 3197 3.677424 GCTTGTGCAAAGGTTGTTGGTTA 60.677 43.478 9.63 0.00 39.41 2.85
579 3198 2.934801 GCTTGTGCAAAGGTTGTTGGTT 60.935 45.455 9.63 0.00 39.41 3.67
580 3199 1.405391 GCTTGTGCAAAGGTTGTTGGT 60.405 47.619 9.63 0.00 39.41 3.67
581 3200 1.134729 AGCTTGTGCAAAGGTTGTTGG 60.135 47.619 7.29 0.00 42.74 3.77
582 3201 2.195922 GAGCTTGTGCAAAGGTTGTTG 58.804 47.619 12.42 0.00 42.74 3.33
583 3202 1.136891 GGAGCTTGTGCAAAGGTTGTT 59.863 47.619 12.42 0.00 42.74 2.83
584 3203 0.746659 GGAGCTTGTGCAAAGGTTGT 59.253 50.000 12.42 0.00 42.74 3.32
585 3204 0.746063 TGGAGCTTGTGCAAAGGTTG 59.254 50.000 12.42 0.00 42.74 3.77
586 3205 1.410153 CTTGGAGCTTGTGCAAAGGTT 59.590 47.619 12.42 0.00 42.74 3.50
587 3206 1.035139 CTTGGAGCTTGTGCAAAGGT 58.965 50.000 11.42 11.42 42.74 3.50
588 3207 0.316204 CCTTGGAGCTTGTGCAAAGG 59.684 55.000 9.63 3.57 42.74 3.11
589 3208 1.035139 ACCTTGGAGCTTGTGCAAAG 58.965 50.000 0.00 0.00 42.74 2.77
590 3209 0.746063 CACCTTGGAGCTTGTGCAAA 59.254 50.000 0.00 0.00 42.74 3.68
591 3210 0.106769 TCACCTTGGAGCTTGTGCAA 60.107 50.000 0.00 0.00 42.74 4.08
592 3211 0.106769 TTCACCTTGGAGCTTGTGCA 60.107 50.000 0.00 0.00 42.74 4.57
593 3212 1.032014 TTTCACCTTGGAGCTTGTGC 58.968 50.000 0.00 0.00 40.05 4.57
594 3213 4.326826 TCTATTTCACCTTGGAGCTTGTG 58.673 43.478 0.00 0.00 0.00 3.33
595 3214 4.287067 TCTCTATTTCACCTTGGAGCTTGT 59.713 41.667 0.00 0.00 0.00 3.16
596 3215 4.836825 TCTCTATTTCACCTTGGAGCTTG 58.163 43.478 0.00 0.00 0.00 4.01
597 3216 4.780021 TCTCTCTATTTCACCTTGGAGCTT 59.220 41.667 0.00 0.00 0.00 3.74
598 3217 4.357325 TCTCTCTATTTCACCTTGGAGCT 58.643 43.478 0.00 0.00 0.00 4.09
599 3218 4.744795 TCTCTCTATTTCACCTTGGAGC 57.255 45.455 0.00 0.00 0.00 4.70
600 3219 7.279758 GTGATTTCTCTCTATTTCACCTTGGAG 59.720 40.741 0.00 0.00 0.00 3.86
601 3220 7.106239 GTGATTTCTCTCTATTTCACCTTGGA 58.894 38.462 0.00 0.00 0.00 3.53
602 3221 6.881065 TGTGATTTCTCTCTATTTCACCTTGG 59.119 38.462 0.00 0.00 34.11 3.61
603 3222 7.912056 TGTGATTTCTCTCTATTTCACCTTG 57.088 36.000 0.00 0.00 34.11 3.61
604 3223 9.525826 AAATGTGATTTCTCTCTATTTCACCTT 57.474 29.630 0.00 0.00 34.11 3.50
650 3269 9.920946 ACTCCAATGGATTGTATGTAAACTATT 57.079 29.630 0.87 0.00 36.06 1.73
653 3272 8.548877 ACTACTCCAATGGATTGTATGTAAACT 58.451 33.333 0.87 0.00 36.06 2.66
654 3273 8.732746 ACTACTCCAATGGATTGTATGTAAAC 57.267 34.615 0.87 0.00 36.06 2.01
655 3274 9.173021 CAACTACTCCAATGGATTGTATGTAAA 57.827 33.333 0.87 0.00 36.06 2.01
656 3275 8.325787 ACAACTACTCCAATGGATTGTATGTAA 58.674 33.333 15.13 0.00 31.84 2.41
657 3276 7.857456 ACAACTACTCCAATGGATTGTATGTA 58.143 34.615 15.13 6.86 31.84 2.29
658 3277 6.721318 ACAACTACTCCAATGGATTGTATGT 58.279 36.000 15.13 9.85 31.84 2.29
659 3278 8.777413 CATACAACTACTCCAATGGATTGTATG 58.223 37.037 31.10 31.10 45.18 2.39
660 3279 8.713971 TCATACAACTACTCCAATGGATTGTAT 58.286 33.333 23.20 23.20 41.16 2.29
661 3280 8.084985 TCATACAACTACTCCAATGGATTGTA 57.915 34.615 21.44 21.44 37.64 2.41
662 3281 6.957631 TCATACAACTACTCCAATGGATTGT 58.042 36.000 19.14 19.14 35.94 2.71
663 3282 9.212641 CTATCATACAACTACTCCAATGGATTG 57.787 37.037 0.87 7.12 37.52 2.67
664 3283 7.880195 GCTATCATACAACTACTCCAATGGATT 59.120 37.037 0.87 0.00 0.00 3.01
665 3284 7.236432 AGCTATCATACAACTACTCCAATGGAT 59.764 37.037 0.87 0.00 0.00 3.41
666 3285 6.554982 AGCTATCATACAACTACTCCAATGGA 59.445 38.462 0.48 0.48 0.00 3.41
667 3286 6.763355 AGCTATCATACAACTACTCCAATGG 58.237 40.000 0.00 0.00 0.00 3.16
668 3287 7.712639 ACAAGCTATCATACAACTACTCCAATG 59.287 37.037 0.00 0.00 0.00 2.82
669 3288 7.796054 ACAAGCTATCATACAACTACTCCAAT 58.204 34.615 0.00 0.00 0.00 3.16
670 3289 7.182817 ACAAGCTATCATACAACTACTCCAA 57.817 36.000 0.00 0.00 0.00 3.53
671 3290 6.791867 ACAAGCTATCATACAACTACTCCA 57.208 37.500 0.00 0.00 0.00 3.86
672 3291 6.480320 CCAACAAGCTATCATACAACTACTCC 59.520 42.308 0.00 0.00 0.00 3.85
673 3292 7.042335 ACCAACAAGCTATCATACAACTACTC 58.958 38.462 0.00 0.00 0.00 2.59
674 3293 6.947464 ACCAACAAGCTATCATACAACTACT 58.053 36.000 0.00 0.00 0.00 2.57
675 3294 7.333423 TCAACCAACAAGCTATCATACAACTAC 59.667 37.037 0.00 0.00 0.00 2.73
676 3295 7.390823 TCAACCAACAAGCTATCATACAACTA 58.609 34.615 0.00 0.00 0.00 2.24
677 3296 6.237901 TCAACCAACAAGCTATCATACAACT 58.762 36.000 0.00 0.00 0.00 3.16
678 3297 6.494893 TCAACCAACAAGCTATCATACAAC 57.505 37.500 0.00 0.00 0.00 3.32
679 3298 6.883756 TCATCAACCAACAAGCTATCATACAA 59.116 34.615 0.00 0.00 0.00 2.41
680 3299 6.413892 TCATCAACCAACAAGCTATCATACA 58.586 36.000 0.00 0.00 0.00 2.29
681 3300 6.925610 TCATCAACCAACAAGCTATCATAC 57.074 37.500 0.00 0.00 0.00 2.39
682 3301 9.223099 CATATCATCAACCAACAAGCTATCATA 57.777 33.333 0.00 0.00 0.00 2.15
683 3302 7.940688 TCATATCATCAACCAACAAGCTATCAT 59.059 33.333 0.00 0.00 0.00 2.45
684 3303 7.281841 TCATATCATCAACCAACAAGCTATCA 58.718 34.615 0.00 0.00 0.00 2.15
685 3304 7.734924 TCATATCATCAACCAACAAGCTATC 57.265 36.000 0.00 0.00 0.00 2.08
686 3305 7.557358 TGTTCATATCATCAACCAACAAGCTAT 59.443 33.333 0.00 0.00 0.00 2.97
687 3306 6.883756 TGTTCATATCATCAACCAACAAGCTA 59.116 34.615 0.00 0.00 0.00 3.32
688 3307 5.711506 TGTTCATATCATCAACCAACAAGCT 59.288 36.000 0.00 0.00 0.00 3.74
689 3308 5.953183 TGTTCATATCATCAACCAACAAGC 58.047 37.500 0.00 0.00 0.00 4.01
690 3309 8.991243 AAATGTTCATATCATCAACCAACAAG 57.009 30.769 0.00 0.00 0.00 3.16
692 3311 9.853555 GTAAAATGTTCATATCATCAACCAACA 57.146 29.630 0.00 0.00 0.00 3.33
693 3312 9.301153 GGTAAAATGTTCATATCATCAACCAAC 57.699 33.333 0.00 0.00 0.00 3.77
694 3313 9.029368 TGGTAAAATGTTCATATCATCAACCAA 57.971 29.630 0.00 0.00 33.05 3.67
695 3314 8.586879 TGGTAAAATGTTCATATCATCAACCA 57.413 30.769 0.00 0.00 33.29 3.67
696 3315 9.301153 GTTGGTAAAATGTTCATATCATCAACC 57.699 33.333 0.00 0.00 0.00 3.77
697 3316 9.853555 TGTTGGTAAAATGTTCATATCATCAAC 57.146 29.630 0.00 0.00 31.65 3.18
715 3334 9.751542 CAGGTTGTATGTTATTTTTGTTGGTAA 57.248 29.630 0.00 0.00 0.00 2.85
716 3335 8.915036 ACAGGTTGTATGTTATTTTTGTTGGTA 58.085 29.630 0.00 0.00 0.00 3.25
717 3336 7.787028 ACAGGTTGTATGTTATTTTTGTTGGT 58.213 30.769 0.00 0.00 0.00 3.67
718 3337 8.547069 CAACAGGTTGTATGTTATTTTTGTTGG 58.453 33.333 4.02 0.00 38.80 3.77
719 3338 9.307121 TCAACAGGTTGTATGTTATTTTTGTTG 57.693 29.630 11.55 0.00 38.80 3.33
720 3339 9.877178 TTCAACAGGTTGTATGTTATTTTTGTT 57.123 25.926 11.55 0.00 38.80 2.83
721 3340 9.528018 CTTCAACAGGTTGTATGTTATTTTTGT 57.472 29.630 11.55 0.00 38.80 2.83
722 3341 9.743057 TCTTCAACAGGTTGTATGTTATTTTTG 57.257 29.630 11.55 0.00 38.80 2.44
724 3343 9.912634 CATCTTCAACAGGTTGTATGTTATTTT 57.087 29.630 11.55 0.00 38.80 1.82
725 3344 8.028938 GCATCTTCAACAGGTTGTATGTTATTT 58.971 33.333 11.55 0.00 38.80 1.40
726 3345 7.362920 GGCATCTTCAACAGGTTGTATGTTATT 60.363 37.037 11.55 0.00 38.80 1.40
727 3346 6.095440 GGCATCTTCAACAGGTTGTATGTTAT 59.905 38.462 11.55 0.00 38.80 1.89
728 3347 5.414454 GGCATCTTCAACAGGTTGTATGTTA 59.586 40.000 11.55 0.00 38.80 2.41
729 3348 4.218417 GGCATCTTCAACAGGTTGTATGTT 59.782 41.667 11.55 0.00 41.47 2.71
730 3349 3.758554 GGCATCTTCAACAGGTTGTATGT 59.241 43.478 11.55 0.00 41.16 2.29
731 3350 3.129287 GGGCATCTTCAACAGGTTGTATG 59.871 47.826 11.55 13.41 41.16 2.39
732 3351 3.010584 AGGGCATCTTCAACAGGTTGTAT 59.989 43.478 11.55 2.74 41.16 2.29
733 3352 2.375174 AGGGCATCTTCAACAGGTTGTA 59.625 45.455 11.55 2.00 41.16 2.41
734 3353 1.145738 AGGGCATCTTCAACAGGTTGT 59.854 47.619 11.55 0.00 41.16 3.32
735 3354 1.542915 CAGGGCATCTTCAACAGGTTG 59.457 52.381 5.81 5.81 41.71 3.77
736 3355 1.425066 TCAGGGCATCTTCAACAGGTT 59.575 47.619 0.00 0.00 0.00 3.50
737 3356 1.004044 CTCAGGGCATCTTCAACAGGT 59.996 52.381 0.00 0.00 0.00 4.00
738 3357 1.280133 TCTCAGGGCATCTTCAACAGG 59.720 52.381 0.00 0.00 0.00 4.00
739 3358 2.746362 GTTCTCAGGGCATCTTCAACAG 59.254 50.000 0.00 0.00 0.00 3.16
740 3359 2.106338 TGTTCTCAGGGCATCTTCAACA 59.894 45.455 0.00 0.00 0.00 3.33
741 3360 2.485814 GTGTTCTCAGGGCATCTTCAAC 59.514 50.000 0.00 0.00 0.00 3.18
742 3361 2.106338 TGTGTTCTCAGGGCATCTTCAA 59.894 45.455 0.00 0.00 0.00 2.69
743 3362 1.699083 TGTGTTCTCAGGGCATCTTCA 59.301 47.619 0.00 0.00 0.00 3.02
744 3363 2.479566 TGTGTTCTCAGGGCATCTTC 57.520 50.000 0.00 0.00 0.00 2.87
745 3364 2.957402 TTGTGTTCTCAGGGCATCTT 57.043 45.000 0.00 0.00 0.00 2.40
746 3365 2.107204 ACTTTGTGTTCTCAGGGCATCT 59.893 45.455 0.00 0.00 0.00 2.90
747 3366 2.485814 GACTTTGTGTTCTCAGGGCATC 59.514 50.000 0.00 0.00 0.00 3.91
748 3367 2.508526 GACTTTGTGTTCTCAGGGCAT 58.491 47.619 0.00 0.00 0.00 4.40
749 3368 1.476833 GGACTTTGTGTTCTCAGGGCA 60.477 52.381 0.00 0.00 0.00 5.36
750 3369 1.239347 GGACTTTGTGTTCTCAGGGC 58.761 55.000 0.00 0.00 0.00 5.19
751 3370 2.158755 AGTGGACTTTGTGTTCTCAGGG 60.159 50.000 0.00 0.00 0.00 4.45
752 3371 3.199880 AGTGGACTTTGTGTTCTCAGG 57.800 47.619 0.00 0.00 0.00 3.86
753 3372 4.623167 CGATAGTGGACTTTGTGTTCTCAG 59.377 45.833 0.00 0.00 0.00 3.35
754 3373 4.279922 TCGATAGTGGACTTTGTGTTCTCA 59.720 41.667 0.00 0.00 37.40 3.27
755 3374 4.621886 GTCGATAGTGGACTTTGTGTTCTC 59.378 45.833 0.00 0.00 37.40 2.87
756 3375 4.557205 GTCGATAGTGGACTTTGTGTTCT 58.443 43.478 0.00 0.00 37.40 3.01
757 3376 3.364023 CGTCGATAGTGGACTTTGTGTTC 59.636 47.826 0.00 0.00 32.24 3.18
758 3377 3.314553 CGTCGATAGTGGACTTTGTGTT 58.685 45.455 0.00 0.00 32.24 3.32
759 3378 2.352421 CCGTCGATAGTGGACTTTGTGT 60.352 50.000 0.00 0.00 35.24 3.72
760 3379 2.259618 CCGTCGATAGTGGACTTTGTG 58.740 52.381 0.00 0.00 35.24 3.33
761 3380 1.403780 GCCGTCGATAGTGGACTTTGT 60.404 52.381 0.00 0.00 35.24 2.83
762 3381 1.135083 AGCCGTCGATAGTGGACTTTG 60.135 52.381 0.00 0.00 35.24 2.77
763 3382 1.135083 CAGCCGTCGATAGTGGACTTT 60.135 52.381 0.00 0.00 35.24 2.66
791 3410 1.946156 CATCGAGGTCATGCGTCCG 60.946 63.158 0.00 0.00 0.00 4.79
798 3417 0.752658 TTGGATCGCATCGAGGTCAT 59.247 50.000 0.00 0.00 39.91 3.06
812 3431 1.000896 CCACGCCTCCCTTTTGGAT 60.001 57.895 0.00 0.00 44.07 3.41
813 3432 1.710996 TTCCACGCCTCCCTTTTGGA 61.711 55.000 0.00 0.00 44.07 3.53
814 3433 1.228429 TTCCACGCCTCCCTTTTGG 60.228 57.895 0.00 0.00 39.97 3.28
816 3435 0.250770 GTCTTCCACGCCTCCCTTTT 60.251 55.000 0.00 0.00 0.00 2.27
817 3436 1.375326 GTCTTCCACGCCTCCCTTT 59.625 57.895 0.00 0.00 0.00 3.11
818 3437 1.841556 TGTCTTCCACGCCTCCCTT 60.842 57.895 0.00 0.00 0.00 3.95
819 3438 2.203788 TGTCTTCCACGCCTCCCT 60.204 61.111 0.00 0.00 0.00 4.20
909 3540 2.427506 GAAAGGGTTGCAGAGTACAGG 58.572 52.381 0.00 0.00 0.00 4.00
936 3568 0.035439 TTGAAATGCGGGAGAGGTCC 60.035 55.000 0.00 0.00 43.05 4.46
937 3569 1.821216 TTTGAAATGCGGGAGAGGTC 58.179 50.000 0.00 0.00 0.00 3.85
1170 3808 4.436998 AGCTTCTCCCCGAACGCG 62.437 66.667 3.53 3.53 33.69 6.01
1481 4119 1.304952 CTCCGAGTCCTCCTCCTGT 59.695 63.158 0.00 0.00 36.82 4.00
1589 4227 2.047274 ATGGGCTTGGACGACACG 60.047 61.111 0.00 0.00 0.00 4.49
1683 4321 1.143305 CACTGAACTGAAGTGCCTCG 58.857 55.000 0.00 0.00 38.72 4.63
1791 4429 4.670992 CGAATTCCATCAAACAGCTGACAG 60.671 45.833 23.35 9.20 0.00 3.51
1949 4587 2.432146 TCTAATTGCATCGAGCCAGAGT 59.568 45.455 0.00 0.00 44.83 3.24
2118 4756 4.148871 CAGGCGACAATATCATAAGACACG 59.851 45.833 0.00 0.00 0.00 4.49
2168 4806 7.276218 CCATATGACACAACACCAAATTCATTC 59.724 37.037 3.65 0.00 0.00 2.67
2175 4813 6.491745 ACAATACCATATGACACAACACCAAA 59.508 34.615 3.65 0.00 0.00 3.28
2181 4819 5.125417 AGGCAACAATACCATATGACACAAC 59.875 40.000 3.65 0.00 41.41 3.32
2183 4821 4.639755 CAGGCAACAATACCATATGACACA 59.360 41.667 3.65 0.00 41.41 3.72
2189 4827 6.849085 TCAAAACAGGCAACAATACCATAT 57.151 33.333 0.00 0.00 41.41 1.78
2191 4829 5.245751 TGATCAAAACAGGCAACAATACCAT 59.754 36.000 0.00 0.00 41.41 3.55
2194 4832 7.599998 AGAAATGATCAAAACAGGCAACAATAC 59.400 33.333 0.00 0.00 41.41 1.89
2201 4839 5.569355 TCCTAGAAATGATCAAAACAGGCA 58.431 37.500 0.00 0.00 0.00 4.75
2220 4858 2.093553 CCCACCGTTCGGTAAATTCCTA 60.094 50.000 16.51 0.00 36.64 2.94
2235 4873 0.536687 TAGCTATCGACCTCCCACCG 60.537 60.000 0.00 0.00 0.00 4.94
2256 4894 2.740714 GGTAACCGCTTGCGCTCAG 61.741 63.158 9.73 5.81 0.00 3.35
2319 4957 3.515502 TCGTCATTGGAGATTGTTCCTCT 59.484 43.478 0.00 0.00 38.12 3.69
2665 5303 3.191162 TGTTATGCAAGGACAGATTGTGC 59.809 43.478 0.00 0.00 39.13 4.57
2709 5347 5.491982 CCAGTTAGCTCCAGTACAAGAAAT 58.508 41.667 0.00 0.00 0.00 2.17
2713 5351 2.028112 TGCCAGTTAGCTCCAGTACAAG 60.028 50.000 0.00 0.00 0.00 3.16
2803 5441 6.515696 GCATTTGCTCCTCTTCAGTAGTTTTT 60.516 38.462 0.00 0.00 38.21 1.94
2860 5498 3.955524 TTGGGAGGTTTTACAGGAACA 57.044 42.857 0.00 0.00 0.00 3.18
2993 5631 5.183969 GGAGTACCTACAACTTTCCAATCC 58.816 45.833 0.00 0.00 0.00 3.01
2994 5632 4.868734 CGGAGTACCTACAACTTTCCAATC 59.131 45.833 0.00 0.00 0.00 2.67
3393 6040 8.442374 AGTAGTTAAGGGATCCAAACACTTTTA 58.558 33.333 15.23 0.78 32.94 1.52
3394 6041 7.295340 AGTAGTTAAGGGATCCAAACACTTTT 58.705 34.615 15.23 1.66 32.94 2.27
3395 6042 6.849151 AGTAGTTAAGGGATCCAAACACTTT 58.151 36.000 15.23 2.00 32.94 2.66
3414 6061 5.937111 AGGGAAAACATGTGTGTAAGTAGT 58.063 37.500 0.00 0.00 37.67 2.73
3415 6062 8.561738 AATAGGGAAAACATGTGTGTAAGTAG 57.438 34.615 0.00 0.00 37.67 2.57
3416 6063 9.439500 GTAATAGGGAAAACATGTGTGTAAGTA 57.561 33.333 0.00 0.00 37.67 2.24
3617 6265 2.504175 GCCCCTAGTTGTATTCCAGTGA 59.496 50.000 0.00 0.00 0.00 3.41
4110 6760 6.554982 TCTTCTTACCACCATGTATATCAGCT 59.445 38.462 0.00 0.00 0.00 4.24
4158 6808 1.228429 TCTTTTCCTTGCCCCACCG 60.228 57.895 0.00 0.00 0.00 4.94
4207 6857 4.072131 ACAGTCACATTGTTATGGTGACC 58.928 43.478 17.56 0.00 40.16 4.02
4236 6886 3.444029 TGACCTTGAGACCAGATCATCA 58.556 45.455 0.00 0.00 0.00 3.07
4281 6931 5.118990 GCAAAGTACTGAGCAGATATGGAA 58.881 41.667 13.29 0.00 0.00 3.53
4284 6934 4.445453 TGGCAAAGTACTGAGCAGATATG 58.555 43.478 18.22 0.00 0.00 1.78
4299 6949 2.982470 GACTTCTCGCATTTTGGCAAAG 59.018 45.455 13.04 3.81 0.00 2.77
4353 7003 5.255397 ACCATGGTGTTAAGAATCCAGAA 57.745 39.130 18.99 0.00 33.33 3.02
4381 7031 9.709387 TGTAATATAGCTATAGCCCATAGTTCA 57.291 33.333 21.17 16.85 43.38 3.18
4403 7054 4.873827 ACAAGCAGAAAGAGAAACGTGTAA 59.126 37.500 0.00 0.00 0.00 2.41
4452 7103 7.759489 AACTTAGGCATGAATCACAAGTTAA 57.241 32.000 0.00 0.00 34.07 2.01
4461 7112 6.147492 CAGATGAGCTAACTTAGGCATGAATC 59.853 42.308 0.00 0.00 0.00 2.52
4511 7163 8.560576 AATCACAAACATAAAAAGAACTGACG 57.439 30.769 0.00 0.00 0.00 4.35
4533 7185 7.117241 TCGTTGAGTTTGTGTTCATCTAATC 57.883 36.000 0.00 0.00 0.00 1.75
4535 7187 5.050363 GCTCGTTGAGTTTGTGTTCATCTAA 60.050 40.000 0.00 0.00 31.39 2.10
4543 7195 3.206150 AGATTGCTCGTTGAGTTTGTGT 58.794 40.909 0.00 0.00 31.39 3.72
4552 7204 4.388773 TGTGCTAACTTAGATTGCTCGTTG 59.611 41.667 0.00 0.00 0.00 4.10
4589 7241 6.055588 GCTTAGAATTTATGCCTAGTGGACA 58.944 40.000 0.00 0.00 34.57 4.02
4590 7242 6.292150 AGCTTAGAATTTATGCCTAGTGGAC 58.708 40.000 0.00 0.00 34.57 4.02
4646 7310 6.110543 TCAAAGCACATTCAGTTCATATCG 57.889 37.500 0.00 0.00 0.00 2.92
4694 7358 4.247267 ACAAAACTTCACATGCTGGATG 57.753 40.909 7.67 7.67 38.15 3.51
4700 7364 5.825507 AGAAGAGAACAAAACTTCACATGC 58.174 37.500 0.00 0.00 41.37 4.06
4726 7390 5.798934 GCATTGCATCAGTAGAGAAAAAGTG 59.201 40.000 3.15 0.00 0.00 3.16
4728 7392 5.946298 TGCATTGCATCAGTAGAGAAAAAG 58.054 37.500 7.38 0.00 31.71 2.27
4729 7393 5.620654 GCTGCATTGCATCAGTAGAGAAAAA 60.621 40.000 12.53 0.00 38.13 1.94
4730 7394 4.142534 GCTGCATTGCATCAGTAGAGAAAA 60.143 41.667 12.53 0.00 38.13 2.29
4774 7440 1.730446 GCAAACAGCTCGAATCCAAGC 60.730 52.381 0.00 0.00 41.15 4.01
4879 7545 2.413371 GGACAGCAGAATCTTTTGACGC 60.413 50.000 0.00 0.00 0.00 5.19
4947 7613 0.238553 GTGGAAGAAGCGCCAGAAAC 59.761 55.000 2.29 0.00 34.22 2.78
5220 7888 8.253810 TGAGATTCGAGATCACAAAATCTAGTT 58.746 33.333 13.91 0.00 36.94 2.24
5285 8034 6.953743 CGAATTGTACCGTATCTTGAAACAAG 59.046 38.462 5.29 5.29 0.00 3.16
5302 8051 4.757019 TGGCCCTAACATACGAATTGTA 57.243 40.909 0.00 0.00 37.49 2.41
5325 8074 7.495934 ACCACATGCTGAGTATAAAATACAGAC 59.504 37.037 0.00 0.00 0.00 3.51
5358 8113 5.379732 AAAACCAAAACGAGAAACAGTCA 57.620 34.783 0.00 0.00 0.00 3.41
5415 8196 2.875317 TGCACATCTAAACACTTTCGCA 59.125 40.909 0.00 0.00 0.00 5.10
5418 8199 6.554334 TTAGGTGCACATCTAAACACTTTC 57.446 37.500 20.43 0.00 31.55 2.62
5538 8319 4.464244 TCACCTCATCTCACCTAGTTTCTG 59.536 45.833 0.00 0.00 0.00 3.02
5552 8333 4.335037 GGAAGCAGAAGAAATCACCTCATC 59.665 45.833 0.00 0.00 0.00 2.92
5553 8334 4.268359 GGAAGCAGAAGAAATCACCTCAT 58.732 43.478 0.00 0.00 0.00 2.90
5554 8335 3.679389 GGAAGCAGAAGAAATCACCTCA 58.321 45.455 0.00 0.00 0.00 3.86
5555 8336 2.675348 CGGAAGCAGAAGAAATCACCTC 59.325 50.000 0.00 0.00 0.00 3.85
5556 8337 2.039084 ACGGAAGCAGAAGAAATCACCT 59.961 45.455 0.00 0.00 0.00 4.00
5557 8338 2.427506 ACGGAAGCAGAAGAAATCACC 58.572 47.619 0.00 0.00 0.00 4.02
5558 8339 3.120165 GGAACGGAAGCAGAAGAAATCAC 60.120 47.826 0.00 0.00 0.00 3.06
5559 8340 3.074412 GGAACGGAAGCAGAAGAAATCA 58.926 45.455 0.00 0.00 0.00 2.57
5560 8341 2.420372 GGGAACGGAAGCAGAAGAAATC 59.580 50.000 0.00 0.00 0.00 2.17
5561 8342 2.224769 TGGGAACGGAAGCAGAAGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
5588 8369 2.237392 AGAGAAGTGGGAAGCATGTACC 59.763 50.000 0.00 0.00 0.00 3.34
5597 8399 5.476945 GCAAATAAAGGAAGAGAAGTGGGAA 59.523 40.000 0.00 0.00 0.00 3.97
5606 8408 5.964958 TCCAGTTGCAAATAAAGGAAGAG 57.035 39.130 0.00 0.00 0.00 2.85
5619 8421 2.622942 GTGACAAGGAAATCCAGTTGCA 59.377 45.455 1.67 0.00 38.89 4.08
5638 8440 4.217118 AGAGCAGAAAACATGGCTTAAGTG 59.783 41.667 4.02 0.00 36.59 3.16
5667 8469 9.796120 AAAACATCGTTTCATCAACTCTTTTTA 57.204 25.926 0.00 0.00 32.53 1.52
5671 8473 7.134815 CAGAAAACATCGTTTCATCAACTCTT 58.865 34.615 0.97 0.00 39.52 2.85
5672 8474 6.662616 CAGAAAACATCGTTTCATCAACTCT 58.337 36.000 0.97 0.00 39.52 3.24
5673 8475 5.340667 GCAGAAAACATCGTTTCATCAACTC 59.659 40.000 0.97 0.00 39.52 3.01
5674 8476 5.215160 GCAGAAAACATCGTTTCATCAACT 58.785 37.500 0.97 0.00 39.52 3.16
5675 8477 4.382754 GGCAGAAAACATCGTTTCATCAAC 59.617 41.667 0.97 0.00 39.52 3.18
5676 8478 4.545610 GGCAGAAAACATCGTTTCATCAA 58.454 39.130 0.97 0.00 39.52 2.57
5734 8537 3.799366 TGAACTAGAAAGCGAAACCACA 58.201 40.909 0.00 0.00 0.00 4.17
5768 8571 4.824289 AGGCAACCAGAATAATTTTGCAG 58.176 39.130 10.09 0.00 43.54 4.41
5771 8574 5.997129 ACCAAAGGCAACCAGAATAATTTTG 59.003 36.000 0.00 0.00 37.17 2.44
5879 8686 4.947645 ACCATGAACAAACCAAGTCATTG 58.052 39.130 0.00 0.00 36.09 2.82
5905 8712 3.439293 TGACGCGAAAGAGAGATCAATC 58.561 45.455 15.93 0.00 33.96 2.67
5906 8713 3.510388 TGACGCGAAAGAGAGATCAAT 57.490 42.857 15.93 0.00 33.96 2.57
5912 8719 4.653806 AAAAGATTGACGCGAAAGAGAG 57.346 40.909 15.93 0.00 33.96 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.