Multiple sequence alignment - TraesCS3A01G273200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G273200 chr3A 100.000 2694 0 0 1 2694 502277677 502280370 0.000000e+00 4975
1 TraesCS3A01G273200 chr3A 99.291 282 2 0 1936 2217 22785799 22785518 6.650000e-141 510
2 TraesCS3A01G273200 chr3B 98.875 978 11 0 1 978 35471407 35472384 0.000000e+00 1746
3 TraesCS3A01G273200 chr3B 92.725 976 53 7 976 1939 492757980 492758949 0.000000e+00 1393
4 TraesCS3A01G273200 chr3B 90.873 252 14 3 2308 2559 492416241 492415999 2.000000e-86 329
5 TraesCS3A01G273200 chr3B 92.000 200 10 4 2212 2407 492758946 492759143 2.640000e-70 276
6 TraesCS3A01G273200 chr3B 88.608 158 1 1 2399 2556 492759324 492759464 2.760000e-40 176
7 TraesCS3A01G273200 chr6B 98.573 981 14 0 1 981 62590822 62591802 0.000000e+00 1735
8 TraesCS3A01G273200 chr6B 98.471 981 15 0 1 981 21328240 21327260 0.000000e+00 1729
9 TraesCS3A01G273200 chr6B 98.466 978 15 0 1 978 707835544 707836521 0.000000e+00 1724
10 TraesCS3A01G273200 chr6B 99.643 280 1 0 1935 2214 715211799 715212078 1.850000e-141 512
11 TraesCS3A01G273200 chr5A 98.569 978 14 0 1 978 344331463 344330486 0.000000e+00 1729
12 TraesCS3A01G273200 chr5A 99.647 283 1 0 1936 2218 693141130 693141412 3.980000e-143 518
13 TraesCS3A01G273200 chr2A 98.569 978 14 0 1 978 593482151 593481174 0.000000e+00 1729
14 TraesCS3A01G273200 chr2A 97.972 986 18 2 1 986 764200815 764201798 0.000000e+00 1709
15 TraesCS3A01G273200 chr1B 98.466 978 15 0 1 978 87184644 87185621 0.000000e+00 1724
16 TraesCS3A01G273200 chr4B 98.264 979 17 0 1 979 638179939 638180917 0.000000e+00 1714
17 TraesCS3A01G273200 chr4B 93.182 132 9 0 2563 2694 322033349 322033480 7.610000e-46 195
18 TraesCS3A01G273200 chr4B 93.182 132 9 0 2563 2694 551967314 551967183 7.610000e-46 195
19 TraesCS3A01G273200 chr3D 92.308 975 56 9 976 1937 378200792 378201760 0.000000e+00 1367
20 TraesCS3A01G273200 chr3D 99.242 132 1 0 2407 2538 378216415 378216546 3.470000e-59 239
21 TraesCS3A01G273200 chr3D 92.424 132 8 1 2276 2407 378213197 378213326 1.270000e-43 187
22 TraesCS3A01G273200 chr7B 99.296 284 1 1 1936 2218 491171365 491171082 1.850000e-141 512
23 TraesCS3A01G273200 chr7B 93.182 132 9 0 2563 2694 39368759 39368890 7.610000e-46 195
24 TraesCS3A01G273200 chr5B 99.643 280 1 0 1936 2215 669690976 669691255 1.850000e-141 512
25 TraesCS3A01G273200 chr5B 93.182 132 9 0 2563 2694 119997268 119997137 7.610000e-46 195
26 TraesCS3A01G273200 chr2B 99.643 280 1 0 1936 2215 481659861 481660140 1.850000e-141 512
27 TraesCS3A01G273200 chr2B 99.288 281 2 0 1935 2215 90444778 90445058 2.390000e-140 508
28 TraesCS3A01G273200 chrUn 99.642 279 1 0 1936 2214 220163438 220163716 6.650000e-141 510
29 TraesCS3A01G273200 chr4A 98.616 289 2 2 1936 2224 692757206 692756920 6.650000e-141 510
30 TraesCS3A01G273200 chr6D 92.647 136 10 0 2559 2694 289430544 289430679 2.120000e-46 196
31 TraesCS3A01G273200 chr2D 93.233 133 9 0 2562 2694 32616392 32616260 2.120000e-46 196
32 TraesCS3A01G273200 chr5D 93.182 132 9 0 2563 2694 301924393 301924262 7.610000e-46 195
33 TraesCS3A01G273200 chr4D 93.182 132 9 0 2563 2694 77811684 77811553 7.610000e-46 195
34 TraesCS3A01G273200 chr1D 93.182 132 9 0 2563 2694 60515253 60515122 7.610000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G273200 chr3A 502277677 502280370 2693 False 4975 4975 100.000 1 2694 1 chr3A.!!$F1 2693
1 TraesCS3A01G273200 chr3B 35471407 35472384 977 False 1746 1746 98.875 1 978 1 chr3B.!!$F1 977
2 TraesCS3A01G273200 chr3B 492757980 492759464 1484 False 615 1393 91.111 976 2556 3 chr3B.!!$F2 1580
3 TraesCS3A01G273200 chr6B 62590822 62591802 980 False 1735 1735 98.573 1 981 1 chr6B.!!$F1 980
4 TraesCS3A01G273200 chr6B 21327260 21328240 980 True 1729 1729 98.471 1 981 1 chr6B.!!$R1 980
5 TraesCS3A01G273200 chr6B 707835544 707836521 977 False 1724 1724 98.466 1 978 1 chr6B.!!$F2 977
6 TraesCS3A01G273200 chr5A 344330486 344331463 977 True 1729 1729 98.569 1 978 1 chr5A.!!$R1 977
7 TraesCS3A01G273200 chr2A 593481174 593482151 977 True 1729 1729 98.569 1 978 1 chr2A.!!$R1 977
8 TraesCS3A01G273200 chr2A 764200815 764201798 983 False 1709 1709 97.972 1 986 1 chr2A.!!$F1 985
9 TraesCS3A01G273200 chr1B 87184644 87185621 977 False 1724 1724 98.466 1 978 1 chr1B.!!$F1 977
10 TraesCS3A01G273200 chr4B 638179939 638180917 978 False 1714 1714 98.264 1 979 1 chr4B.!!$F2 978
11 TraesCS3A01G273200 chr3D 378200792 378201760 968 False 1367 1367 92.308 976 1937 1 chr3D.!!$F1 961
12 TraesCS3A01G273200 chr3D 378213197 378216546 3349 False 213 239 95.833 2276 2538 2 chr3D.!!$F2 262

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 646 0.465705 GATGCTCCTTGTCCCGATCA 59.534 55.0 0.0 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2204 2217 0.035725 GGGCGTTAACTAAGGCTGGT 60.036 55.0 12.42 0.0 44.09 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
339 340 1.971418 GATCCCATCGAGGAGGCTC 59.029 63.158 5.78 5.78 39.95 4.70
645 646 0.465705 GATGCTCCTTGTCCCGATCA 59.534 55.000 0.00 0.00 0.00 2.92
1031 1032 2.394563 GGAAGTGGCTTCTGCTCGC 61.395 63.158 8.52 0.00 40.07 5.03
1061 1062 1.674322 CGGCCATGGTTTCCTCGTT 60.674 57.895 14.67 0.00 0.00 3.85
1064 1065 1.595093 GCCATGGTTTCCTCGTTGGG 61.595 60.000 14.67 0.00 36.20 4.12
1205 1206 2.078392 GACCTCCTCCTCGTCGATATC 58.922 57.143 0.00 0.00 0.00 1.63
1206 1207 1.271488 ACCTCCTCCTCGTCGATATCC 60.271 57.143 0.00 0.00 0.00 2.59
1219 1220 4.732442 CGTCGATATCCTCATCATGAATCG 59.268 45.833 14.58 14.58 36.87 3.34
1423 1424 0.461548 TCTTCTTCATCAGCGGCGAT 59.538 50.000 12.98 0.00 0.00 4.58
1430 1431 2.130426 ATCAGCGGCGATGAGGACT 61.130 57.895 31.67 13.63 29.44 3.85
1573 1574 1.222936 GGACATGAGCCCTGGTGAG 59.777 63.158 0.00 0.00 0.00 3.51
1684 1685 2.160205 GTGGGGTTTTTAGGTGCTCTC 58.840 52.381 0.00 0.00 0.00 3.20
1700 1701 0.967380 TCTCGTGCTCTGAGATGGCA 60.967 55.000 9.28 0.00 37.55 4.92
1714 1715 0.319555 ATGGCATACGAATCGGACCG 60.320 55.000 7.84 7.84 0.00 4.79
1740 1741 0.105778 TGTGTTCGTGCTGTCATGGA 59.894 50.000 0.00 0.00 0.00 3.41
1741 1742 1.270785 TGTGTTCGTGCTGTCATGGAT 60.271 47.619 0.00 0.00 0.00 3.41
1742 1743 1.129251 GTGTTCGTGCTGTCATGGATG 59.871 52.381 0.00 0.00 0.00 3.51
1744 1745 0.324614 TTCGTGCTGTCATGGATGGT 59.675 50.000 0.00 0.00 0.00 3.55
1746 1747 1.552792 TCGTGCTGTCATGGATGGTTA 59.447 47.619 0.00 0.00 0.00 2.85
1750 1751 4.450976 GTGCTGTCATGGATGGTTATGTA 58.549 43.478 0.00 0.00 0.00 2.29
1751 1752 4.273480 GTGCTGTCATGGATGGTTATGTAC 59.727 45.833 0.00 0.00 0.00 2.90
1752 1753 4.164030 TGCTGTCATGGATGGTTATGTACT 59.836 41.667 0.00 0.00 0.00 2.73
1754 1755 6.126911 TGCTGTCATGGATGGTTATGTACTTA 60.127 38.462 0.00 0.00 0.00 2.24
1772 1776 7.372714 TGTACTTATGTTCGTTGTGTGATACT 58.627 34.615 0.00 0.00 0.00 2.12
1785 1798 9.007252 CGTTGTGTGATACTCTAGTTGTTATAC 57.993 37.037 0.00 0.00 0.00 1.47
1814 1827 7.122948 AGTTCAAGGAGTTGAGATTCGTATACT 59.877 37.037 0.56 0.00 43.66 2.12
1856 1869 3.500299 TGTTACATGAACACGTGAATGGG 59.500 43.478 25.01 10.91 43.30 4.00
1936 1949 9.739276 TCTTGAGATATGGTTTTTGATACAGTT 57.261 29.630 0.00 0.00 0.00 3.16
1939 1952 9.613428 TGAGATATGGTTTTTGATACAGTTAGG 57.387 33.333 0.00 0.00 0.00 2.69
1940 1953 8.451908 AGATATGGTTTTTGATACAGTTAGGC 57.548 34.615 0.00 0.00 0.00 3.93
1941 1954 8.275040 AGATATGGTTTTTGATACAGTTAGGCT 58.725 33.333 0.00 0.00 0.00 4.58
1952 1965 3.185246 CAGTTAGGCTGGTCATAGTGG 57.815 52.381 0.00 0.00 41.42 4.00
1953 1966 2.119495 AGTTAGGCTGGTCATAGTGGG 58.881 52.381 0.00 0.00 0.00 4.61
1954 1967 1.141053 GTTAGGCTGGTCATAGTGGGG 59.859 57.143 0.00 0.00 0.00 4.96
1955 1968 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
1956 1969 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
1957 1970 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
1958 1971 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
1959 1972 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
1960 1973 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
1961 1974 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
1962 1975 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
1963 1976 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
1964 1977 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
1965 1978 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
1966 1979 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
1967 1980 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
1968 1981 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
1969 1982 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
1970 1983 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
1971 1984 6.649041 AGTGGGGAGTAACTTAGACTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
1972 1985 7.037342 AGTGGGGAGTAACTTAGACTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
1973 1986 6.889177 AGTGGGGAGTAACTTAGACTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
1974 1987 6.660949 GTGGGGAGTAACTTAGACTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
1975 1988 7.341512 GTGGGGAGTAACTTAGACTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
1976 1989 8.560039 TGGGGAGTAACTTAGACTAGTAACATA 58.440 37.037 0.00 0.00 0.00 2.29
1977 1990 8.845227 GGGGAGTAACTTAGACTAGTAACATAC 58.155 40.741 0.00 0.00 0.00 2.39
1978 1991 9.401058 GGGAGTAACTTAGACTAGTAACATACA 57.599 37.037 0.00 0.00 0.00 2.29
2007 2020 9.964354 TGTTACTAGTCTATGTTACTACCTTCA 57.036 33.333 0.00 0.00 0.00 3.02
2013 2026 8.466617 AGTCTATGTTACTACCTTCATAGTGG 57.533 38.462 0.00 0.00 40.01 4.00
2014 2027 7.506261 AGTCTATGTTACTACCTTCATAGTGGG 59.494 40.741 0.00 0.00 40.01 4.61
2015 2028 7.287235 GTCTATGTTACTACCTTCATAGTGGGT 59.713 40.741 0.00 0.00 40.01 4.51
2016 2029 8.505246 TCTATGTTACTACCTTCATAGTGGGTA 58.495 37.037 0.00 0.00 40.01 3.69
2021 2034 5.517322 CTACCTTCATAGTGGGTAGTGTC 57.483 47.826 9.46 0.00 44.30 3.67
2022 2035 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
2023 2036 4.362677 ACCTTCATAGTGGGTAGTGTCAT 58.637 43.478 0.00 0.00 0.00 3.06
2024 2037 5.525484 ACCTTCATAGTGGGTAGTGTCATA 58.475 41.667 0.00 0.00 0.00 2.15
2025 2038 5.598830 ACCTTCATAGTGGGTAGTGTCATAG 59.401 44.000 0.00 0.00 0.00 2.23
2026 2039 5.011125 CCTTCATAGTGGGTAGTGTCATAGG 59.989 48.000 0.00 0.00 0.00 2.57
2027 2040 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
2028 2041 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
2029 2042 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
2030 2043 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
2031 2044 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
2032 2045 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
2033 2046 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
2034 2047 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
2035 2048 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
2054 2067 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
2055 2068 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
2056 2069 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
2081 2094 9.851686 ACTTTATAGACTCATTATGCATTGGAA 57.148 29.630 3.54 0.00 0.00 3.53
2084 2097 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
2085 2098 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
2086 2099 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
2087 2100 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
2088 2101 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
2089 2102 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
2090 2103 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
2091 2104 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
2092 2105 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
2093 2106 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
2094 2107 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
2095 2108 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
2096 2109 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
2097 2110 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
2098 2111 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
2099 2112 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
2100 2113 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
2129 2142 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
2130 2143 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
2131 2144 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
2132 2145 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
2133 2146 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
2134 2147 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
2135 2148 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
2136 2149 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
2137 2150 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
2138 2151 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
2139 2152 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
2140 2153 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
2141 2154 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
2142 2155 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
2143 2156 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
2144 2157 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
2145 2158 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
2146 2159 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
2147 2160 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
2148 2161 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
2149 2162 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
2150 2163 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
2151 2164 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
2152 2165 5.824624 CCTCATTAACTACTTGCCACATCAT 59.175 40.000 0.00 0.00 0.00 2.45
2153 2166 6.017605 CCTCATTAACTACTTGCCACATCATC 60.018 42.308 0.00 0.00 0.00 2.92
2154 2167 6.413892 TCATTAACTACTTGCCACATCATCA 58.586 36.000 0.00 0.00 0.00 3.07
2155 2168 7.056006 TCATTAACTACTTGCCACATCATCAT 58.944 34.615 0.00 0.00 0.00 2.45
2156 2169 7.557358 TCATTAACTACTTGCCACATCATCATT 59.443 33.333 0.00 0.00 0.00 2.57
2157 2170 7.701539 TTAACTACTTGCCACATCATCATTT 57.298 32.000 0.00 0.00 0.00 2.32
2158 2171 6.594788 AACTACTTGCCACATCATCATTTT 57.405 33.333 0.00 0.00 0.00 1.82
2159 2172 6.594788 ACTACTTGCCACATCATCATTTTT 57.405 33.333 0.00 0.00 0.00 1.94
2160 2173 6.392354 ACTACTTGCCACATCATCATTTTTG 58.608 36.000 0.00 0.00 0.00 2.44
2161 2174 3.998341 ACTTGCCACATCATCATTTTTGC 59.002 39.130 0.00 0.00 0.00 3.68
2162 2175 3.965379 TGCCACATCATCATTTTTGCT 57.035 38.095 0.00 0.00 0.00 3.91
2163 2176 4.274602 TGCCACATCATCATTTTTGCTT 57.725 36.364 0.00 0.00 0.00 3.91
2164 2177 5.402997 TGCCACATCATCATTTTTGCTTA 57.597 34.783 0.00 0.00 0.00 3.09
2165 2178 5.979993 TGCCACATCATCATTTTTGCTTAT 58.020 33.333 0.00 0.00 0.00 1.73
2166 2179 5.813157 TGCCACATCATCATTTTTGCTTATG 59.187 36.000 0.00 0.00 0.00 1.90
2167 2180 5.813672 GCCACATCATCATTTTTGCTTATGT 59.186 36.000 0.00 0.00 0.00 2.29
2168 2181 6.237996 GCCACATCATCATTTTTGCTTATGTG 60.238 38.462 0.00 0.00 41.50 3.21
2169 2182 7.229228 CACATCATCATTTTTGCTTATGTGG 57.771 36.000 0.00 0.00 39.34 4.17
2170 2183 5.813672 ACATCATCATTTTTGCTTATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
2171 2184 5.402997 TCATCATTTTTGCTTATGTGGCA 57.597 34.783 0.00 0.00 37.97 4.92
2172 2185 5.979993 TCATCATTTTTGCTTATGTGGCAT 58.020 33.333 0.00 0.00 39.54 4.40
2173 2186 6.044046 TCATCATTTTTGCTTATGTGGCATC 58.956 36.000 0.00 0.00 39.54 3.91
2174 2187 5.664294 TCATTTTTGCTTATGTGGCATCT 57.336 34.783 0.00 0.00 39.54 2.90
2175 2188 6.772360 TCATTTTTGCTTATGTGGCATCTA 57.228 33.333 0.00 0.00 39.54 1.98
2176 2189 7.350744 TCATTTTTGCTTATGTGGCATCTAT 57.649 32.000 0.00 0.00 39.54 1.98
2177 2190 7.204604 TCATTTTTGCTTATGTGGCATCTATG 58.795 34.615 0.00 0.00 39.54 2.23
2178 2191 6.528537 TTTTTGCTTATGTGGCATCTATGT 57.471 33.333 0.00 0.00 39.54 2.29
2179 2192 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
2180 2193 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
2181 2194 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
2182 2195 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
2183 2196 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
2184 2197 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
2185 2198 6.369065 GCTTATGTGGCATCTATGTTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
2186 2199 7.612065 TTATGTGGCATCTATGTTACTACCT 57.388 36.000 0.00 0.00 0.00 3.08
2187 2200 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
2188 2201 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
2189 2202 6.993079 TGTGGCATCTATGTTACTACCTATG 58.007 40.000 0.00 0.00 0.00 2.23
2190 2203 6.553476 TGTGGCATCTATGTTACTACCTATGT 59.447 38.462 0.00 0.00 0.00 2.29
2191 2204 7.070696 TGTGGCATCTATGTTACTACCTATGTT 59.929 37.037 0.00 0.00 0.00 2.71
2192 2205 8.582437 GTGGCATCTATGTTACTACCTATGTTA 58.418 37.037 0.00 0.00 0.00 2.41
2193 2206 8.582437 TGGCATCTATGTTACTACCTATGTTAC 58.418 37.037 0.00 0.00 0.00 2.50
2194 2207 8.804204 GGCATCTATGTTACTACCTATGTTACT 58.196 37.037 0.00 0.00 0.00 2.24
2195 2208 9.843334 GCATCTATGTTACTACCTATGTTACTC 57.157 37.037 0.00 0.00 0.00 2.59
2197 2210 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
2198 2211 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
2199 2212 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
2200 2213 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
2201 2214 7.642186 TGTTACTACCTATGTTACTCCCACTA 58.358 38.462 0.00 0.00 0.00 2.74
2202 2215 8.284435 TGTTACTACCTATGTTACTCCCACTAT 58.716 37.037 0.00 0.00 0.00 2.12
2203 2216 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
2204 2217 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
2205 2218 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
2206 2219 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
2207 2220 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
2208 2221 5.011125 CCTATGTTACTCCCACTATGACCAG 59.989 48.000 0.00 0.00 0.00 4.00
2209 2222 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
2210 2223 1.789523 TACTCCCACTATGACCAGCC 58.210 55.000 0.00 0.00 0.00 4.85
2220 2233 4.804139 CACTATGACCAGCCTTAGTTAACG 59.196 45.833 0.00 0.00 0.00 3.18
2224 2237 0.746923 CCAGCCTTAGTTAACGCCCC 60.747 60.000 0.00 0.00 0.00 5.80
2225 2238 1.087771 CAGCCTTAGTTAACGCCCCG 61.088 60.000 0.00 0.00 0.00 5.73
2234 2247 2.093128 AGTTAACGCCCCGAATTCTGAT 60.093 45.455 3.52 0.00 0.00 2.90
2250 2263 7.871973 CGAATTCTGATCCATCTTCACTTAGAT 59.128 37.037 3.52 0.00 35.26 1.98
2274 2287 0.037975 GGCTGTTACGGTTCGAGGAA 60.038 55.000 0.00 0.00 0.00 3.36
2278 2291 4.117685 GCTGTTACGGTTCGAGGAATAAT 58.882 43.478 0.00 0.00 0.00 1.28
2332 2346 0.545309 TCCCTGGAGAAGTGGTGGAG 60.545 60.000 0.00 0.00 0.00 3.86
2333 2347 0.545309 CCCTGGAGAAGTGGTGGAGA 60.545 60.000 0.00 0.00 0.00 3.71
2387 2401 4.929211 GGCGAAATATTTCCAGCAAAGTTT 59.071 37.500 21.87 0.00 33.68 2.66
2388 2402 5.408299 GGCGAAATATTTCCAGCAAAGTTTT 59.592 36.000 21.87 0.00 33.68 2.43
2545 5840 3.059166 GGCCTTTGCATGTAGTGTTTTG 58.941 45.455 0.00 0.00 40.13 2.44
2556 5851 6.017440 GCATGTAGTGTTTTGTTCCTTGTAGA 60.017 38.462 0.00 0.00 0.00 2.59
2557 5852 7.308589 GCATGTAGTGTTTTGTTCCTTGTAGAT 60.309 37.037 0.00 0.00 0.00 1.98
2558 5853 8.567948 CATGTAGTGTTTTGTTCCTTGTAGATT 58.432 33.333 0.00 0.00 0.00 2.40
2559 5854 8.514330 TGTAGTGTTTTGTTCCTTGTAGATTT 57.486 30.769 0.00 0.00 0.00 2.17
2560 5855 8.617809 TGTAGTGTTTTGTTCCTTGTAGATTTC 58.382 33.333 0.00 0.00 0.00 2.17
2561 5856 7.639113 AGTGTTTTGTTCCTTGTAGATTTCA 57.361 32.000 0.00 0.00 0.00 2.69
2562 5857 7.707104 AGTGTTTTGTTCCTTGTAGATTTCAG 58.293 34.615 0.00 0.00 0.00 3.02
2563 5858 6.918022 GTGTTTTGTTCCTTGTAGATTTCAGG 59.082 38.462 0.00 0.00 0.00 3.86
2564 5859 6.040391 TGTTTTGTTCCTTGTAGATTTCAGGG 59.960 38.462 0.00 0.00 34.08 4.45
2565 5860 4.993705 TGTTCCTTGTAGATTTCAGGGT 57.006 40.909 0.00 0.00 34.37 4.34
2566 5861 5.319043 TGTTCCTTGTAGATTTCAGGGTT 57.681 39.130 0.00 0.00 34.37 4.11
2567 5862 6.442541 TGTTCCTTGTAGATTTCAGGGTTA 57.557 37.500 0.00 0.00 34.37 2.85
2568 5863 6.843752 TGTTCCTTGTAGATTTCAGGGTTAA 58.156 36.000 0.00 0.00 34.37 2.01
2569 5864 7.466804 TGTTCCTTGTAGATTTCAGGGTTAAT 58.533 34.615 0.00 0.00 34.37 1.40
2570 5865 7.947890 TGTTCCTTGTAGATTTCAGGGTTAATT 59.052 33.333 0.00 0.00 34.37 1.40
2571 5866 8.803235 GTTCCTTGTAGATTTCAGGGTTAATTT 58.197 33.333 0.00 0.00 34.37 1.82
2572 5867 8.348285 TCCTTGTAGATTTCAGGGTTAATTTG 57.652 34.615 0.00 0.00 34.37 2.32
2573 5868 8.167392 TCCTTGTAGATTTCAGGGTTAATTTGA 58.833 33.333 0.00 0.00 34.37 2.69
2574 5869 8.971073 CCTTGTAGATTTCAGGGTTAATTTGAT 58.029 33.333 0.00 0.00 0.00 2.57
2580 5875 9.822185 AGATTTCAGGGTTAATTTGATAAATGC 57.178 29.630 0.00 0.00 0.00 3.56
2581 5876 8.962884 ATTTCAGGGTTAATTTGATAAATGCC 57.037 30.769 0.00 0.00 0.00 4.40
2582 5877 7.487822 TTCAGGGTTAATTTGATAAATGCCA 57.512 32.000 0.00 0.00 0.00 4.92
2583 5878 6.872920 TCAGGGTTAATTTGATAAATGCCAC 58.127 36.000 0.00 0.00 0.00 5.01
2584 5879 6.667414 TCAGGGTTAATTTGATAAATGCCACT 59.333 34.615 0.00 0.00 0.00 4.00
2585 5880 6.980397 CAGGGTTAATTTGATAAATGCCACTC 59.020 38.462 0.00 0.00 0.00 3.51
2586 5881 6.098266 AGGGTTAATTTGATAAATGCCACTCC 59.902 38.462 0.00 0.00 0.00 3.85
2587 5882 6.127196 GGGTTAATTTGATAAATGCCACTCCA 60.127 38.462 0.00 0.00 0.00 3.86
2588 5883 7.327214 GGTTAATTTGATAAATGCCACTCCAA 58.673 34.615 0.00 0.00 0.00 3.53
2589 5884 7.821846 GGTTAATTTGATAAATGCCACTCCAAA 59.178 33.333 0.00 0.00 0.00 3.28
2590 5885 9.382275 GTTAATTTGATAAATGCCACTCCAAAT 57.618 29.630 0.00 0.00 35.18 2.32
2591 5886 9.598517 TTAATTTGATAAATGCCACTCCAAATC 57.401 29.630 0.00 0.00 33.33 2.17
2592 5887 6.855763 TTTGATAAATGCCACTCCAAATCT 57.144 33.333 0.00 0.00 0.00 2.40
2593 5888 7.953005 TTTGATAAATGCCACTCCAAATCTA 57.047 32.000 0.00 0.00 0.00 1.98
2594 5889 7.953005 TTGATAAATGCCACTCCAAATCTAA 57.047 32.000 0.00 0.00 0.00 2.10
2595 5890 7.333528 TGATAAATGCCACTCCAAATCTAAC 57.666 36.000 0.00 0.00 0.00 2.34
2596 5891 4.701956 AAATGCCACTCCAAATCTAACG 57.298 40.909 0.00 0.00 0.00 3.18
2597 5892 3.627395 ATGCCACTCCAAATCTAACGA 57.373 42.857 0.00 0.00 0.00 3.85
2598 5893 3.627395 TGCCACTCCAAATCTAACGAT 57.373 42.857 0.00 0.00 0.00 3.73
2599 5894 3.950397 TGCCACTCCAAATCTAACGATT 58.050 40.909 0.00 0.00 41.53 3.34
2601 5896 4.394920 TGCCACTCCAAATCTAACGATTTC 59.605 41.667 0.00 0.00 45.57 2.17
2602 5897 4.494199 GCCACTCCAAATCTAACGATTTCG 60.494 45.833 0.00 0.00 45.57 3.46
2603 5898 4.868171 CCACTCCAAATCTAACGATTTCGA 59.132 41.667 7.01 0.00 45.57 3.71
2608 5903 7.843490 TCCAAATCTAACGATTTCGAGAAAT 57.157 32.000 10.48 10.48 45.57 2.17
2609 5904 7.684670 TCCAAATCTAACGATTTCGAGAAATG 58.315 34.615 14.91 9.98 45.57 2.32
2610 5905 7.333423 TCCAAATCTAACGATTTCGAGAAATGT 59.667 33.333 14.91 10.50 45.57 2.71
2611 5906 7.636359 CCAAATCTAACGATTTCGAGAAATGTC 59.364 37.037 14.91 3.01 45.57 3.06
2612 5907 7.827819 AATCTAACGATTTCGAGAAATGTCA 57.172 32.000 14.91 1.26 40.77 3.58
2613 5908 6.627690 TCTAACGATTTCGAGAAATGTCAC 57.372 37.500 14.91 1.31 40.77 3.67
2614 5909 6.387465 TCTAACGATTTCGAGAAATGTCACT 58.613 36.000 14.91 3.63 40.77 3.41
2615 5910 4.910746 ACGATTTCGAGAAATGTCACTG 57.089 40.909 14.91 2.27 40.77 3.66
2616 5911 4.307432 ACGATTTCGAGAAATGTCACTGT 58.693 39.130 14.91 2.78 40.77 3.55
2617 5912 5.466819 ACGATTTCGAGAAATGTCACTGTA 58.533 37.500 14.91 0.00 40.77 2.74
2618 5913 5.924254 ACGATTTCGAGAAATGTCACTGTAA 59.076 36.000 14.91 0.00 40.77 2.41
2619 5914 6.590292 ACGATTTCGAGAAATGTCACTGTAAT 59.410 34.615 14.91 0.00 40.77 1.89
2620 5915 7.117812 ACGATTTCGAGAAATGTCACTGTAATT 59.882 33.333 14.91 0.00 40.77 1.40
2621 5916 7.957484 CGATTTCGAGAAATGTCACTGTAATTT 59.043 33.333 14.91 0.00 40.77 1.82
2622 5917 9.612620 GATTTCGAGAAATGTCACTGTAATTTT 57.387 29.630 14.91 0.00 40.77 1.82
2623 5918 9.612620 ATTTCGAGAAATGTCACTGTAATTTTC 57.387 29.630 9.96 0.00 39.36 2.29
2624 5919 7.722795 TCGAGAAATGTCACTGTAATTTTCA 57.277 32.000 0.00 0.00 0.00 2.69
2625 5920 8.148807 TCGAGAAATGTCACTGTAATTTTCAA 57.851 30.769 0.00 0.00 0.00 2.69
2626 5921 8.616942 TCGAGAAATGTCACTGTAATTTTCAAA 58.383 29.630 0.00 0.00 0.00 2.69
2627 5922 9.398170 CGAGAAATGTCACTGTAATTTTCAAAT 57.602 29.630 0.00 0.00 0.00 2.32
2648 5943 9.464714 TCAAATTTTGAAAAATGCCATTTCATG 57.535 25.926 9.36 0.00 43.94 3.07
2649 5944 7.876896 AATTTTGAAAAATGCCATTTCATGC 57.123 28.000 2.61 0.00 43.94 4.06
2650 5945 5.373981 TTTGAAAAATGCCATTTCATGCC 57.626 34.783 2.61 0.00 43.94 4.40
2651 5946 4.017177 TGAAAAATGCCATTTCATGCCA 57.983 36.364 2.61 0.00 40.75 4.92
2652 5947 4.590918 TGAAAAATGCCATTTCATGCCAT 58.409 34.783 2.61 0.00 40.75 4.40
2653 5948 5.010933 TGAAAAATGCCATTTCATGCCATT 58.989 33.333 2.61 0.00 40.75 3.16
2654 5949 5.477291 TGAAAAATGCCATTTCATGCCATTT 59.523 32.000 2.61 0.91 40.75 2.32
2655 5950 5.986501 AAAATGCCATTTCATGCCATTTT 57.013 30.435 10.94 10.94 0.00 1.82
2656 5951 5.986501 AAATGCCATTTCATGCCATTTTT 57.013 30.435 0.00 0.00 0.00 1.94
2657 5952 7.463961 AAAATGCCATTTCATGCCATTTTTA 57.536 28.000 10.94 0.00 30.94 1.52
2658 5953 6.687081 AATGCCATTTCATGCCATTTTTAG 57.313 33.333 0.00 0.00 0.00 1.85
2659 5954 5.163281 TGCCATTTCATGCCATTTTTAGT 57.837 34.783 0.00 0.00 0.00 2.24
2660 5955 4.936411 TGCCATTTCATGCCATTTTTAGTG 59.064 37.500 0.00 0.00 0.00 2.74
2661 5956 4.333372 GCCATTTCATGCCATTTTTAGTGG 59.667 41.667 0.00 0.00 39.80 4.00
2672 5967 6.777526 CCATTTTTAGTGGCATTTTTCGAA 57.222 33.333 0.00 0.00 0.00 3.71
2673 5968 6.820459 CCATTTTTAGTGGCATTTTTCGAAG 58.180 36.000 0.00 0.00 0.00 3.79
2674 5969 6.423604 CCATTTTTAGTGGCATTTTTCGAAGT 59.576 34.615 0.00 0.00 0.00 3.01
2675 5970 7.359181 CCATTTTTAGTGGCATTTTTCGAAGTC 60.359 37.037 0.00 0.00 0.00 3.01
2676 5971 6.385649 TTTTAGTGGCATTTTTCGAAGTCT 57.614 33.333 0.00 0.00 0.00 3.24
2677 5972 3.904136 AGTGGCATTTTTCGAAGTCTG 57.096 42.857 0.00 0.00 0.00 3.51
2678 5973 2.554032 AGTGGCATTTTTCGAAGTCTGG 59.446 45.455 0.00 0.00 0.00 3.86
2679 5974 2.552315 GTGGCATTTTTCGAAGTCTGGA 59.448 45.455 0.00 0.00 0.00 3.86
2680 5975 2.813754 TGGCATTTTTCGAAGTCTGGAG 59.186 45.455 0.00 0.00 0.00 3.86
2681 5976 2.814336 GGCATTTTTCGAAGTCTGGAGT 59.186 45.455 0.00 0.00 0.00 3.85
2682 5977 3.365364 GGCATTTTTCGAAGTCTGGAGTG 60.365 47.826 0.00 0.00 0.00 3.51
2683 5978 3.365364 GCATTTTTCGAAGTCTGGAGTGG 60.365 47.826 0.00 0.00 0.00 4.00
2684 5979 1.878953 TTTTCGAAGTCTGGAGTGGC 58.121 50.000 0.00 0.00 0.00 5.01
2685 5980 0.319555 TTTCGAAGTCTGGAGTGGCG 60.320 55.000 0.00 0.00 0.00 5.69
2686 5981 1.461091 TTCGAAGTCTGGAGTGGCGT 61.461 55.000 0.00 0.00 0.00 5.68
2687 5982 1.006102 CGAAGTCTGGAGTGGCGTT 60.006 57.895 0.00 0.00 0.00 4.84
2688 5983 0.600255 CGAAGTCTGGAGTGGCGTTT 60.600 55.000 0.00 0.00 0.00 3.60
2689 5984 1.594331 GAAGTCTGGAGTGGCGTTTT 58.406 50.000 0.00 0.00 0.00 2.43
2690 5985 1.947456 GAAGTCTGGAGTGGCGTTTTT 59.053 47.619 0.00 0.00 0.00 1.94
2691 5986 1.594331 AGTCTGGAGTGGCGTTTTTC 58.406 50.000 0.00 0.00 0.00 2.29
2692 5987 1.134220 AGTCTGGAGTGGCGTTTTTCA 60.134 47.619 0.00 0.00 0.00 2.69
2693 5988 1.673920 GTCTGGAGTGGCGTTTTTCAA 59.326 47.619 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
357 358 3.851128 GCCTCCGGCTACCTCCAC 61.851 72.222 0.00 0.00 46.69 4.02
718 719 2.886134 GCCACCACCGGTTCCACTA 61.886 63.158 2.97 0.00 31.02 2.74
986 987 2.020131 GCCATGGCGTTGATCTCAG 58.980 57.895 23.48 0.00 0.00 3.35
997 998 2.203070 CCTACAGTCCGCCATGGC 60.203 66.667 27.67 27.67 37.80 4.40
1005 1006 1.903183 AGAAGCCACTTCCTACAGTCC 59.097 52.381 3.77 0.00 40.98 3.85
1006 1007 2.933056 GCAGAAGCCACTTCCTACAGTC 60.933 54.545 3.77 0.00 40.98 3.51
1013 1014 2.394563 GCGAGCAGAAGCCACTTCC 61.395 63.158 3.77 0.00 40.98 3.46
1061 1062 1.001020 TAGAAGACGTACGCCCCCA 60.001 57.895 16.72 0.00 0.00 4.96
1064 1065 4.678396 CGTAGAAGACGTACGCCC 57.322 61.111 16.72 7.71 46.86 6.13
1179 1180 1.744522 GACGAGGAGGAGGTCTTGTAC 59.255 57.143 0.00 0.00 0.00 2.90
1180 1181 1.678123 CGACGAGGAGGAGGTCTTGTA 60.678 57.143 0.00 0.00 0.00 2.41
1184 1185 1.129917 TATCGACGAGGAGGAGGTCT 58.870 55.000 3.01 0.00 0.00 3.85
1205 1206 6.908870 TTTACACTTCGATTCATGATGAGG 57.091 37.500 0.00 0.00 0.00 3.86
1206 1207 7.043125 ACGATTTACACTTCGATTCATGATGAG 60.043 37.037 0.00 0.00 38.67 2.90
1219 1220 6.106877 ACATGCATGTACGATTTACACTTC 57.893 37.500 30.50 0.00 39.68 3.01
1423 1424 1.483595 CCTTCTGGCACCAGTCCTCA 61.484 60.000 16.12 0.00 43.96 3.86
1573 1574 4.899239 CTGCGCGACATCCCCTCC 62.899 72.222 12.10 0.00 0.00 4.30
1670 1671 2.037251 AGAGCACGAGAGCACCTAAAAA 59.963 45.455 0.00 0.00 36.85 1.94
1684 1685 1.495878 GTATGCCATCTCAGAGCACG 58.504 55.000 0.00 0.00 39.77 5.34
1700 1701 1.789078 CGTCCCGGTCCGATTCGTAT 61.789 60.000 14.39 0.00 0.00 3.06
1714 1715 1.885850 AGCACGAACACAACGTCCC 60.886 57.895 0.00 0.00 42.07 4.46
1740 1741 7.604927 ACACAACGAACATAAGTACATAACCAT 59.395 33.333 0.00 0.00 0.00 3.55
1741 1742 6.930164 ACACAACGAACATAAGTACATAACCA 59.070 34.615 0.00 0.00 0.00 3.67
1742 1743 7.116662 TCACACAACGAACATAAGTACATAACC 59.883 37.037 0.00 0.00 0.00 2.85
1744 1745 8.766000 ATCACACAACGAACATAAGTACATAA 57.234 30.769 0.00 0.00 0.00 1.90
1746 1747 8.033038 AGTATCACACAACGAACATAAGTACAT 58.967 33.333 0.00 0.00 0.00 2.29
1750 1751 6.688578 AGAGTATCACACAACGAACATAAGT 58.311 36.000 0.00 0.00 37.82 2.24
1751 1752 7.968956 ACTAGAGTATCACACAACGAACATAAG 59.031 37.037 0.00 0.00 37.82 1.73
1752 1753 7.823665 ACTAGAGTATCACACAACGAACATAA 58.176 34.615 0.00 0.00 37.82 1.90
1754 1755 6.268825 ACTAGAGTATCACACAACGAACAT 57.731 37.500 0.00 0.00 37.82 2.71
1772 1776 8.565896 TCCTTGAACTACGTATAACAACTAGA 57.434 34.615 0.00 0.00 0.00 2.43
1785 1798 4.559251 CGAATCTCAACTCCTTGAACTACG 59.441 45.833 0.00 0.00 35.92 3.51
1856 1869 4.946784 ATCATGAAAACGGCTTCAGTAC 57.053 40.909 0.00 0.00 38.66 2.73
1927 1940 5.069119 CACTATGACCAGCCTAACTGTATCA 59.931 44.000 0.00 0.00 45.68 2.15
1930 1943 3.704566 CCACTATGACCAGCCTAACTGTA 59.295 47.826 0.00 0.00 45.68 2.74
1932 1945 2.158900 CCCACTATGACCAGCCTAACTG 60.159 54.545 0.00 0.00 46.77 3.16
1933 1946 2.119495 CCCACTATGACCAGCCTAACT 58.881 52.381 0.00 0.00 0.00 2.24
1934 1947 1.141053 CCCCACTATGACCAGCCTAAC 59.859 57.143 0.00 0.00 0.00 2.34
1936 1949 0.639943 TCCCCACTATGACCAGCCTA 59.360 55.000 0.00 0.00 0.00 3.93
1937 1950 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
1938 1951 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
1939 1952 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
1940 1953 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
1941 1954 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
1942 1955 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
1943 1956 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
1944 1957 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
1945 1958 7.061688 ACTAGTCTAAGTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
1946 1959 7.223472 ACTAGTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
1947 1960 6.649041 ACTAGTCTAAGTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
1948 1961 5.533333 ACTAGTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
1949 1962 6.660949 TGTTACTAGTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
1950 1963 6.793478 TGTTACTAGTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
1951 1964 7.894753 ATGTTACTAGTCTAAGTTACTCCCC 57.105 40.000 0.00 0.00 31.82 4.81
1952 1965 9.401058 TGTATGTTACTAGTCTAAGTTACTCCC 57.599 37.037 0.00 0.00 31.82 4.30
1981 1994 9.964354 TGAAGGTAGTAACATAGACTAGTAACA 57.036 33.333 0.00 0.00 30.08 2.41
1987 2000 9.570468 CCACTATGAAGGTAGTAACATAGACTA 57.430 37.037 16.37 0.00 42.41 2.59
1988 2001 7.506261 CCCACTATGAAGGTAGTAACATAGACT 59.494 40.741 16.37 0.00 42.41 3.24
1989 2002 7.287235 ACCCACTATGAAGGTAGTAACATAGAC 59.713 40.741 16.37 0.00 42.41 2.59
1990 2003 7.359849 ACCCACTATGAAGGTAGTAACATAGA 58.640 38.462 16.37 0.00 42.41 1.98
1991 2004 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
1992 2005 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
1993 2006 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
2000 2013 4.938028 TGACACTACCCACTATGAAGGTA 58.062 43.478 0.00 0.00 35.02 3.08
2001 2014 3.786553 TGACACTACCCACTATGAAGGT 58.213 45.455 0.00 0.00 37.69 3.50
2002 2015 5.011125 CCTATGACACTACCCACTATGAAGG 59.989 48.000 0.00 0.00 0.00 3.46
2003 2016 5.598830 ACCTATGACACTACCCACTATGAAG 59.401 44.000 0.00 0.00 0.00 3.02
2004 2017 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
2005 2018 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
2006 2019 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
2007 2020 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
2008 2021 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
2009 2022 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
2010 2023 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
2011 2024 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
2012 2025 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
2013 2026 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
2014 2027 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
2015 2028 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
2016 2029 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
2017 2030 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
2018 2031 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
2019 2032 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
2020 2033 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
2021 2034 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
2022 2035 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
2023 2036 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
2024 2037 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
2055 2068 9.851686 TTCCAATGCATAATGAGTCTATAAAGT 57.148 29.630 0.00 0.00 0.00 2.66
2058 2071 9.066892 GGTTTCCAATGCATAATGAGTCTATAA 57.933 33.333 0.00 0.00 0.00 0.98
2059 2072 7.387673 CGGTTTCCAATGCATAATGAGTCTATA 59.612 37.037 0.00 0.00 0.00 1.31
2060 2073 6.205464 CGGTTTCCAATGCATAATGAGTCTAT 59.795 38.462 0.00 0.00 0.00 1.98
2061 2074 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
2062 2075 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
2063 2076 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
2064 2077 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
2065 2078 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
2066 2079 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
2067 2080 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
2068 2081 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
2069 2082 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
2070 2083 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
2071 2084 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
2072 2085 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
2073 2086 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
2074 2087 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
2075 2088 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
2076 2089 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
2077 2090 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
2078 2091 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
2079 2092 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
2080 2093 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
2081 2094 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
2082 2095 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
2083 2096 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
2084 2097 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
2103 2116 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
2104 2117 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
2105 2118 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
2106 2119 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
2107 2120 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
2108 2121 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
2109 2122 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
2110 2123 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
2111 2124 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
2112 2125 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
2113 2126 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
2114 2127 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
2115 2128 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
2116 2129 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
2117 2130 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
2118 2131 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
2119 2132 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
2120 2133 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
2121 2134 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
2122 2135 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
2123 2136 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
2124 2137 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
2125 2138 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
2126 2139 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
2127 2140 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
2128 2141 5.185454 TGATGTGGCAAGTAGTTAATGAGG 58.815 41.667 0.00 0.00 0.00 3.86
2129 2142 6.539826 TGATGATGTGGCAAGTAGTTAATGAG 59.460 38.462 0.00 0.00 0.00 2.90
2130 2143 6.413892 TGATGATGTGGCAAGTAGTTAATGA 58.586 36.000 0.00 0.00 0.00 2.57
2131 2144 6.682423 TGATGATGTGGCAAGTAGTTAATG 57.318 37.500 0.00 0.00 0.00 1.90
2132 2145 7.886629 AATGATGATGTGGCAAGTAGTTAAT 57.113 32.000 0.00 0.00 0.00 1.40
2133 2146 7.701539 AAATGATGATGTGGCAAGTAGTTAA 57.298 32.000 0.00 0.00 0.00 2.01
2134 2147 7.701539 AAAATGATGATGTGGCAAGTAGTTA 57.298 32.000 0.00 0.00 0.00 2.24
2135 2148 6.594788 AAAATGATGATGTGGCAAGTAGTT 57.405 33.333 0.00 0.00 0.00 2.24
2136 2149 6.392354 CAAAAATGATGATGTGGCAAGTAGT 58.608 36.000 0.00 0.00 0.00 2.73
2137 2150 5.290158 GCAAAAATGATGATGTGGCAAGTAG 59.710 40.000 0.00 0.00 0.00 2.57
2138 2151 5.047164 AGCAAAAATGATGATGTGGCAAGTA 60.047 36.000 0.00 0.00 0.00 2.24
2139 2152 3.998341 GCAAAAATGATGATGTGGCAAGT 59.002 39.130 0.00 0.00 0.00 3.16
2140 2153 4.250464 AGCAAAAATGATGATGTGGCAAG 58.750 39.130 0.00 0.00 0.00 4.01
2141 2154 4.274602 AGCAAAAATGATGATGTGGCAA 57.725 36.364 0.00 0.00 0.00 4.52
2142 2155 3.965379 AGCAAAAATGATGATGTGGCA 57.035 38.095 0.00 0.00 0.00 4.92
2143 2156 5.813672 ACATAAGCAAAAATGATGATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
2144 2157 7.229228 CACATAAGCAAAAATGATGATGTGG 57.771 36.000 14.08 0.34 39.34 4.17
2145 2158 6.237996 GCCACATAAGCAAAAATGATGATGTG 60.238 38.462 14.69 14.69 41.53 3.21
2146 2159 5.813672 GCCACATAAGCAAAAATGATGATGT 59.186 36.000 0.00 0.00 0.00 3.06
2147 2160 5.813157 TGCCACATAAGCAAAAATGATGATG 59.187 36.000 0.00 0.00 37.28 3.07
2148 2161 5.979993 TGCCACATAAGCAAAAATGATGAT 58.020 33.333 0.00 0.00 37.28 2.45
2149 2162 5.402997 TGCCACATAAGCAAAAATGATGA 57.597 34.783 0.00 0.00 37.28 2.92
2150 2163 6.046593 AGATGCCACATAAGCAAAAATGATG 58.953 36.000 0.00 0.00 44.83 3.07
2151 2164 6.229936 AGATGCCACATAAGCAAAAATGAT 57.770 33.333 0.00 0.00 44.83 2.45
2152 2165 5.664294 AGATGCCACATAAGCAAAAATGA 57.336 34.783 0.00 0.00 44.83 2.57
2153 2166 6.982141 ACATAGATGCCACATAAGCAAAAATG 59.018 34.615 0.00 0.00 44.83 2.32
2154 2167 7.116075 ACATAGATGCCACATAAGCAAAAAT 57.884 32.000 0.00 0.00 44.83 1.82
2155 2168 6.528537 ACATAGATGCCACATAAGCAAAAA 57.471 33.333 0.00 0.00 44.83 1.94
2156 2169 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
2157 2170 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
2158 2171 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
2159 2172 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
2160 2173 6.369065 GGTAGTAACATAGATGCCACATAAGC 59.631 42.308 0.00 0.00 0.00 3.09
2161 2174 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
2162 2175 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
2163 2176 8.749354 CATAGGTAGTAACATAGATGCCACATA 58.251 37.037 0.00 0.00 0.00 2.29
2164 2177 7.235606 ACATAGGTAGTAACATAGATGCCACAT 59.764 37.037 0.00 0.00 0.00 3.21
2165 2178 6.553476 ACATAGGTAGTAACATAGATGCCACA 59.447 38.462 0.00 0.00 0.00 4.17
2166 2179 6.994221 ACATAGGTAGTAACATAGATGCCAC 58.006 40.000 0.00 0.00 0.00 5.01
2167 2180 7.612065 AACATAGGTAGTAACATAGATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
2168 2181 8.804204 AGTAACATAGGTAGTAACATAGATGCC 58.196 37.037 0.00 0.00 0.00 4.40
2169 2182 9.843334 GAGTAACATAGGTAGTAACATAGATGC 57.157 37.037 0.00 0.00 0.00 3.91
2171 2184 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
2172 2185 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
2173 2186 8.574737 GTGGGAGTAACATAGGTAGTAACATAG 58.425 40.741 0.00 0.00 0.00 2.23
2174 2187 8.284435 AGTGGGAGTAACATAGGTAGTAACATA 58.716 37.037 0.00 0.00 0.00 2.29
2175 2188 7.130775 AGTGGGAGTAACATAGGTAGTAACAT 58.869 38.462 0.00 0.00 0.00 2.71
2176 2189 6.496743 AGTGGGAGTAACATAGGTAGTAACA 58.503 40.000 0.00 0.00 0.00 2.41
2177 2190 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
2178 2191 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
2179 2192 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
2180 2193 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
2181 2194 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
2182 2195 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
2183 2196 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
2184 2197 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
2185 2198 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
2186 2199 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
2187 2200 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
2188 2201 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
2189 2202 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
2190 2203 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
2191 2204 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
2192 2205 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
2193 2206 1.207791 AAGGCTGGTCATAGTGGGAG 58.792 55.000 0.00 0.00 0.00 4.30
2194 2207 2.292918 ACTAAGGCTGGTCATAGTGGGA 60.293 50.000 0.00 0.00 0.00 4.37
2195 2208 2.119495 ACTAAGGCTGGTCATAGTGGG 58.881 52.381 0.00 0.00 0.00 4.61
2196 2209 3.914426 AACTAAGGCTGGTCATAGTGG 57.086 47.619 0.00 0.00 0.00 4.00
2197 2210 4.804139 CGTTAACTAAGGCTGGTCATAGTG 59.196 45.833 3.71 0.00 0.00 2.74
2198 2211 4.679905 GCGTTAACTAAGGCTGGTCATAGT 60.680 45.833 3.71 0.00 42.10 2.12
2199 2212 3.802685 GCGTTAACTAAGGCTGGTCATAG 59.197 47.826 3.71 0.00 42.10 2.23
2200 2213 3.431207 GGCGTTAACTAAGGCTGGTCATA 60.431 47.826 12.42 0.00 44.09 2.15
2201 2214 2.629051 GCGTTAACTAAGGCTGGTCAT 58.371 47.619 3.71 0.00 42.10 3.06
2202 2215 1.338389 GGCGTTAACTAAGGCTGGTCA 60.338 52.381 12.42 0.00 44.09 4.02
2203 2216 1.366679 GGCGTTAACTAAGGCTGGTC 58.633 55.000 12.42 0.00 44.09 4.02
2204 2217 0.035725 GGGCGTTAACTAAGGCTGGT 60.036 55.000 12.42 0.00 44.09 4.00
2205 2218 0.746923 GGGGCGTTAACTAAGGCTGG 60.747 60.000 12.42 0.00 44.09 4.85
2206 2219 1.087771 CGGGGCGTTAACTAAGGCTG 61.088 60.000 12.42 2.23 44.09 4.85
2207 2220 1.219935 CGGGGCGTTAACTAAGGCT 59.780 57.895 12.42 0.00 44.09 4.58
2208 2221 0.391528 TTCGGGGCGTTAACTAAGGC 60.392 55.000 3.71 5.75 43.96 4.35
2209 2222 2.320745 ATTCGGGGCGTTAACTAAGG 57.679 50.000 3.71 0.00 0.00 2.69
2210 2223 3.308866 CAGAATTCGGGGCGTTAACTAAG 59.691 47.826 3.71 0.00 0.00 2.18
2220 2233 1.072965 AGATGGATCAGAATTCGGGGC 59.927 52.381 5.73 0.00 0.00 5.80
2224 2237 7.205992 TCTAAGTGAAGATGGATCAGAATTCG 58.794 38.462 0.00 0.00 0.00 3.34
2225 2238 8.991026 CATCTAAGTGAAGATGGATCAGAATTC 58.009 37.037 0.00 0.00 46.07 2.17
2332 2346 6.654793 ACGAGATGCTCTTTGTTCTTATTC 57.345 37.500 0.00 0.00 0.00 1.75
2333 2347 7.440523 AAACGAGATGCTCTTTGTTCTTATT 57.559 32.000 0.00 0.00 29.19 1.40
2387 2401 7.866898 CCACACATTTCAAAGAACATACATGAA 59.133 33.333 0.00 0.00 0.00 2.57
2388 2402 7.230309 TCCACACATTTCAAAGAACATACATGA 59.770 33.333 0.00 0.00 0.00 3.07
2545 5840 7.939784 ATTAACCCTGAAATCTACAAGGAAC 57.060 36.000 0.00 0.00 0.00 3.62
2556 5851 8.547173 TGGCATTTATCAAATTAACCCTGAAAT 58.453 29.630 0.00 0.00 0.00 2.17
2557 5852 7.821846 GTGGCATTTATCAAATTAACCCTGAAA 59.178 33.333 0.00 0.00 0.00 2.69
2558 5853 7.180051 AGTGGCATTTATCAAATTAACCCTGAA 59.820 33.333 0.00 0.00 0.00 3.02
2559 5854 6.667414 AGTGGCATTTATCAAATTAACCCTGA 59.333 34.615 0.00 0.00 0.00 3.86
2560 5855 6.877236 AGTGGCATTTATCAAATTAACCCTG 58.123 36.000 0.00 0.00 0.00 4.45
2561 5856 6.098266 GGAGTGGCATTTATCAAATTAACCCT 59.902 38.462 0.00 0.00 0.00 4.34
2562 5857 6.127196 TGGAGTGGCATTTATCAAATTAACCC 60.127 38.462 0.00 0.00 0.00 4.11
2563 5858 6.872920 TGGAGTGGCATTTATCAAATTAACC 58.127 36.000 0.00 0.00 0.00 2.85
2564 5859 8.770438 TTTGGAGTGGCATTTATCAAATTAAC 57.230 30.769 0.00 0.00 0.00 2.01
2565 5860 9.598517 GATTTGGAGTGGCATTTATCAAATTAA 57.401 29.630 15.25 0.00 34.71 1.40
2566 5861 8.980596 AGATTTGGAGTGGCATTTATCAAATTA 58.019 29.630 15.25 0.00 34.71 1.40
2567 5862 7.854337 AGATTTGGAGTGGCATTTATCAAATT 58.146 30.769 15.25 7.82 34.71 1.82
2568 5863 7.427989 AGATTTGGAGTGGCATTTATCAAAT 57.572 32.000 14.55 14.55 36.46 2.32
2569 5864 6.855763 AGATTTGGAGTGGCATTTATCAAA 57.144 33.333 0.00 0.16 0.00 2.69
2570 5865 7.415095 CGTTAGATTTGGAGTGGCATTTATCAA 60.415 37.037 0.00 0.00 0.00 2.57
2571 5866 6.038161 CGTTAGATTTGGAGTGGCATTTATCA 59.962 38.462 0.00 0.00 0.00 2.15
2572 5867 6.260050 TCGTTAGATTTGGAGTGGCATTTATC 59.740 38.462 0.00 0.00 0.00 1.75
2573 5868 6.119536 TCGTTAGATTTGGAGTGGCATTTAT 58.880 36.000 0.00 0.00 0.00 1.40
2574 5869 5.492895 TCGTTAGATTTGGAGTGGCATTTA 58.507 37.500 0.00 0.00 0.00 1.40
2575 5870 4.331968 TCGTTAGATTTGGAGTGGCATTT 58.668 39.130 0.00 0.00 0.00 2.32
2576 5871 3.950397 TCGTTAGATTTGGAGTGGCATT 58.050 40.909 0.00 0.00 0.00 3.56
2577 5872 3.627395 TCGTTAGATTTGGAGTGGCAT 57.373 42.857 0.00 0.00 0.00 4.40
2578 5873 3.627395 ATCGTTAGATTTGGAGTGGCA 57.373 42.857 0.00 0.00 32.03 4.92
2589 5884 7.009631 CAGTGACATTTCTCGAAATCGTTAGAT 59.990 37.037 2.41 0.00 38.84 1.98
2590 5885 6.308041 CAGTGACATTTCTCGAAATCGTTAGA 59.692 38.462 2.41 0.00 38.84 2.10
2591 5886 6.089551 ACAGTGACATTTCTCGAAATCGTTAG 59.910 38.462 0.00 0.00 38.84 2.34
2592 5887 5.924254 ACAGTGACATTTCTCGAAATCGTTA 59.076 36.000 0.00 0.51 38.84 3.18
2593 5888 4.750098 ACAGTGACATTTCTCGAAATCGTT 59.250 37.500 0.00 0.00 38.84 3.85
2594 5889 4.307432 ACAGTGACATTTCTCGAAATCGT 58.693 39.130 0.00 5.00 38.84 3.73
2595 5890 4.910746 ACAGTGACATTTCTCGAAATCG 57.089 40.909 0.00 0.00 38.84 3.34
2596 5891 9.612620 AAAATTACAGTGACATTTCTCGAAATC 57.387 29.630 0.00 0.00 38.84 2.17
2597 5892 9.612620 GAAAATTACAGTGACATTTCTCGAAAT 57.387 29.630 0.00 0.00 41.33 2.17
2598 5893 8.616942 TGAAAATTACAGTGACATTTCTCGAAA 58.383 29.630 0.00 0.00 34.46 3.46
2599 5894 8.148807 TGAAAATTACAGTGACATTTCTCGAA 57.851 30.769 0.00 0.00 0.00 3.71
2600 5895 7.722795 TGAAAATTACAGTGACATTTCTCGA 57.277 32.000 0.00 0.00 0.00 4.04
2601 5896 8.781067 TTTGAAAATTACAGTGACATTTCTCG 57.219 30.769 0.00 0.00 0.00 4.04
2622 5917 9.464714 CATGAAATGGCATTTTTCAAAATTTGA 57.535 25.926 25.02 4.03 43.94 2.69
2623 5918 8.217778 GCATGAAATGGCATTTTTCAAAATTTG 58.782 29.630 25.02 15.43 46.86 2.32
2624 5919 8.300495 GCATGAAATGGCATTTTTCAAAATTT 57.700 26.923 25.02 4.19 46.86 1.82
2625 5920 7.876896 GCATGAAATGGCATTTTTCAAAATT 57.123 28.000 25.02 4.53 46.86 1.82
2649 5944 6.423604 ACTTCGAAAAATGCCACTAAAAATGG 59.576 34.615 0.00 0.00 40.50 3.16
2650 5945 7.382218 AGACTTCGAAAAATGCCACTAAAAATG 59.618 33.333 0.00 0.00 0.00 2.32
2651 5946 7.382218 CAGACTTCGAAAAATGCCACTAAAAAT 59.618 33.333 0.00 0.00 0.00 1.82
2652 5947 6.695278 CAGACTTCGAAAAATGCCACTAAAAA 59.305 34.615 0.00 0.00 0.00 1.94
2653 5948 6.205784 CAGACTTCGAAAAATGCCACTAAAA 58.794 36.000 0.00 0.00 0.00 1.52
2654 5949 5.278266 CCAGACTTCGAAAAATGCCACTAAA 60.278 40.000 0.00 0.00 0.00 1.85
2655 5950 4.215399 CCAGACTTCGAAAAATGCCACTAA 59.785 41.667 0.00 0.00 0.00 2.24
2656 5951 3.751175 CCAGACTTCGAAAAATGCCACTA 59.249 43.478 0.00 0.00 0.00 2.74
2657 5952 2.554032 CCAGACTTCGAAAAATGCCACT 59.446 45.455 0.00 0.00 0.00 4.00
2658 5953 2.552315 TCCAGACTTCGAAAAATGCCAC 59.448 45.455 0.00 0.00 0.00 5.01
2659 5954 2.813754 CTCCAGACTTCGAAAAATGCCA 59.186 45.455 0.00 0.00 0.00 4.92
2660 5955 2.814336 ACTCCAGACTTCGAAAAATGCC 59.186 45.455 0.00 0.00 0.00 4.40
2661 5956 3.365364 CCACTCCAGACTTCGAAAAATGC 60.365 47.826 0.00 0.00 0.00 3.56
2662 5957 3.365364 GCCACTCCAGACTTCGAAAAATG 60.365 47.826 0.00 0.00 0.00 2.32
2663 5958 2.814336 GCCACTCCAGACTTCGAAAAAT 59.186 45.455 0.00 0.00 0.00 1.82
2664 5959 2.218603 GCCACTCCAGACTTCGAAAAA 58.781 47.619 0.00 0.00 0.00 1.94
2665 5960 1.872237 CGCCACTCCAGACTTCGAAAA 60.872 52.381 0.00 0.00 0.00 2.29
2666 5961 0.319555 CGCCACTCCAGACTTCGAAA 60.320 55.000 0.00 0.00 0.00 3.46
2667 5962 1.289066 CGCCACTCCAGACTTCGAA 59.711 57.895 0.00 0.00 0.00 3.71
2668 5963 1.461091 AACGCCACTCCAGACTTCGA 61.461 55.000 0.00 0.00 0.00 3.71
2669 5964 0.600255 AAACGCCACTCCAGACTTCG 60.600 55.000 0.00 0.00 0.00 3.79
2670 5965 1.594331 AAAACGCCACTCCAGACTTC 58.406 50.000 0.00 0.00 0.00 3.01
2671 5966 1.947456 GAAAAACGCCACTCCAGACTT 59.053 47.619 0.00 0.00 0.00 3.01
2672 5967 1.134220 TGAAAAACGCCACTCCAGACT 60.134 47.619 0.00 0.00 0.00 3.24
2673 5968 1.305201 TGAAAAACGCCACTCCAGAC 58.695 50.000 0.00 0.00 0.00 3.51
2674 5969 2.045561 TTGAAAAACGCCACTCCAGA 57.954 45.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.