Multiple sequence alignment - TraesCS3A01G272600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G272600 chr3A 100.000 5118 0 0 1 5118 501893239 501898356 0.000000e+00 9452.0
1 TraesCS3A01G272600 chr3A 93.208 265 18 0 4356 4620 22225866 22226130 1.730000e-104 390.0
2 TraesCS3A01G272600 chr3A 77.323 269 54 6 4855 5118 511680755 511681021 8.880000e-33 152.0
3 TraesCS3A01G272600 chr3D 94.344 2210 76 20 2085 4269 377192867 377190682 0.000000e+00 3343.0
4 TraesCS3A01G272600 chr3D 90.643 887 55 14 1214 2100 377193739 377192881 0.000000e+00 1153.0
5 TraesCS3A01G272600 chr3D 87.549 771 48 16 398 1159 377194470 377193739 0.000000e+00 848.0
6 TraesCS3A01G272600 chr3D 93.764 449 20 6 4672 5118 377188664 377188222 0.000000e+00 667.0
7 TraesCS3A01G272600 chr3D 81.572 407 73 2 2 407 377194899 377194494 8.210000e-88 335.0
8 TraesCS3A01G272600 chr3B 90.433 1641 84 34 398 1999 492102445 492104051 0.000000e+00 2093.0
9 TraesCS3A01G272600 chr3B 95.559 1171 36 9 3099 4269 492105167 492106321 0.000000e+00 1860.0
10 TraesCS3A01G272600 chr3B 91.465 1113 53 19 1987 3061 492104069 492105177 0.000000e+00 1491.0
11 TraesCS3A01G272600 chr3B 94.655 449 18 4 4672 5118 492199672 492200116 0.000000e+00 691.0
12 TraesCS3A01G272600 chr3B 83.085 402 62 4 3 403 492101994 492102390 1.350000e-95 361.0
13 TraesCS3A01G272600 chr3B 79.245 212 43 1 4908 5118 508527818 508528029 4.130000e-31 147.0
14 TraesCS3A01G272600 chr3B 78.512 121 20 5 2 119 598972052 598972169 1.980000e-09 75.0
15 TraesCS3A01G272600 chr6A 95.802 262 10 1 4359 4619 182314913 182315174 6.130000e-114 422.0
16 TraesCS3A01G272600 chr6A 94.697 264 12 1 4359 4620 514037585 514037322 4.770000e-110 409.0
17 TraesCS3A01G272600 chr6A 94.275 262 14 1 4357 4617 444707593 444707332 2.870000e-107 399.0
18 TraesCS3A01G272600 chr6A 92.857 42 0 1 1392 1433 7714917 7714955 1.990000e-04 58.4
19 TraesCS3A01G272600 chr2A 95.076 264 11 1 4359 4620 625011940 625011677 1.030000e-111 414.0
20 TraesCS3A01G272600 chr5A 94.656 262 12 1 4359 4618 85269504 85269765 6.170000e-109 405.0
21 TraesCS3A01G272600 chr5A 94.318 264 12 2 4359 4620 288672319 288672581 7.980000e-108 401.0
22 TraesCS3A01G272600 chr7A 93.333 270 17 1 4352 4620 618658604 618658335 1.030000e-106 398.0
23 TraesCS3A01G272600 chr1A 93.939 264 13 2 4358 4618 511704172 511704435 3.710000e-106 396.0
24 TraesCS3A01G272600 chr5D 96.471 85 3 0 318 402 91624277 91624193 1.920000e-29 141.0
25 TraesCS3A01G272600 chr4B 93.443 61 4 0 2 62 514587731 514587671 1.960000e-14 91.6
26 TraesCS3A01G272600 chr2B 81.034 116 19 2 1331 1446 780673270 780673382 7.060000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G272600 chr3A 501893239 501898356 5117 False 9452.00 9452 100.0000 1 5118 1 chr3A.!!$F2 5117
1 TraesCS3A01G272600 chr3D 377188222 377194899 6677 True 1269.20 3343 89.5744 2 5118 5 chr3D.!!$R1 5116
2 TraesCS3A01G272600 chr3B 492101994 492106321 4327 False 1451.25 2093 90.1355 3 4269 4 chr3B.!!$F4 4266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.108520 GTTATGTCCGGACCGCTTCA 60.109 55.0 31.19 12.54 0.0 3.02 F
493 556 0.242825 TCCTACTCACGAAAGGCACG 59.757 55.0 0.00 0.00 0.0 5.34 F
654 734 0.320421 CCGGTACCTGACAACTGTGG 60.320 60.0 10.90 0.00 0.0 4.17 F
1383 1492 0.031585 AGCGCTGTAAACTGTCGTGA 59.968 50.0 10.39 0.00 0.0 4.35 F
2271 2448 0.823356 TGAAGCTGTCCTGGGTTTGC 60.823 55.0 0.00 0.00 0.0 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 1152 0.040204 AAGATGGGGTGAAGCAAGGG 59.960 55.000 0.00 0.0 0.00 3.95 R
1361 1470 0.710567 CGACAGTTTACAGCGCTCAG 59.289 55.000 7.13 0.0 0.00 3.35 R
2256 2433 1.109323 ACAAGCAAACCCAGGACAGC 61.109 55.000 0.00 0.0 0.00 4.40 R
3169 3397 0.651031 TGATCTCGTACAGCTCGTCG 59.349 55.000 0.00 0.0 0.00 5.12 R
4209 4437 1.003580 AGAACGGGATGAAGTGCATGT 59.996 47.619 0.00 0.0 37.34 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.513158 CGTCCTGAGCCGACTTCAT 59.487 57.895 0.00 0.00 0.00 2.57
33 34 1.361668 CCGACTTCATTGTGGAGCGG 61.362 60.000 6.69 6.69 0.00 5.52
35 36 0.955428 GACTTCATTGTGGAGCGGCA 60.955 55.000 1.45 0.00 0.00 5.69
54 55 1.914051 CACGCTCTACAACGACATGAG 59.086 52.381 0.00 0.00 0.00 2.90
85 86 1.070786 GTGTCGGGCAGGAAGAACA 59.929 57.895 0.00 0.00 0.00 3.18
88 89 3.423154 CGGGCAGGAAGAACACGC 61.423 66.667 0.00 0.00 0.00 5.34
93 94 1.301401 CAGGAAGAACACGCGGGAA 60.301 57.895 19.19 0.00 0.00 3.97
110 111 2.375509 GGGAAGGAGGAGAGGTTTTTGA 59.624 50.000 0.00 0.00 0.00 2.69
120 121 0.486879 AGGTTTTTGATGGGCCAGGA 59.513 50.000 13.78 0.00 0.00 3.86
121 122 1.132881 AGGTTTTTGATGGGCCAGGAA 60.133 47.619 13.78 3.87 0.00 3.36
122 123 1.696884 GGTTTTTGATGGGCCAGGAAA 59.303 47.619 13.78 10.52 0.00 3.13
132 133 1.478654 GGGCCAGGAAAGTCAGAAACA 60.479 52.381 4.39 0.00 0.00 2.83
144 145 1.768275 TCAGAAACAGACTTGGGAGCA 59.232 47.619 0.00 0.00 0.00 4.26
147 148 2.173569 AGAAACAGACTTGGGAGCAGTT 59.826 45.455 0.00 0.00 0.00 3.16
157 158 2.283529 GGAGCAGTTCGGACTCCCA 61.284 63.158 0.00 0.00 43.54 4.37
160 161 1.194781 AGCAGTTCGGACTCCCACAT 61.195 55.000 0.00 0.00 32.54 3.21
168 169 3.170717 TCGGACTCCCACATACTTTTCT 58.829 45.455 0.00 0.00 0.00 2.52
171 172 4.081862 CGGACTCCCACATACTTTTCTACA 60.082 45.833 0.00 0.00 0.00 2.74
182 183 8.708742 CACATACTTTTCTACATTTGTCTTCGA 58.291 33.333 0.00 0.00 0.00 3.71
186 187 8.378172 ACTTTTCTACATTTGTCTTCGATTGA 57.622 30.769 0.00 0.00 0.00 2.57
192 193 2.363788 TTGTCTTCGATTGACGGGAG 57.636 50.000 12.38 0.00 42.82 4.30
195 196 2.094700 TGTCTTCGATTGACGGGAGAAG 60.095 50.000 12.38 0.00 42.82 2.85
196 197 2.094649 GTCTTCGATTGACGGGAGAAGT 60.095 50.000 3.82 0.00 42.82 3.01
197 198 2.561419 TCTTCGATTGACGGGAGAAGTT 59.439 45.455 3.86 0.00 42.82 2.66
204 205 1.475280 TGACGGGAGAAGTTATGTCCG 59.525 52.381 7.17 7.17 42.49 4.79
211 212 0.175073 GAAGTTATGTCCGGACCGCT 59.825 55.000 31.19 19.44 0.00 5.52
212 213 0.611714 AAGTTATGTCCGGACCGCTT 59.388 50.000 31.19 23.44 0.00 4.68
214 215 0.108520 GTTATGTCCGGACCGCTTCA 60.109 55.000 31.19 12.54 0.00 3.02
217 218 2.029964 GTCCGGACCGCTTCACAA 59.970 61.111 24.75 0.00 0.00 3.33
227 228 1.801771 CCGCTTCACAAACCGATACAA 59.198 47.619 0.00 0.00 0.00 2.41
230 231 4.472286 CGCTTCACAAACCGATACAAAAT 58.528 39.130 0.00 0.00 0.00 1.82
231 232 4.915085 CGCTTCACAAACCGATACAAAATT 59.085 37.500 0.00 0.00 0.00 1.82
233 234 5.689961 GCTTCACAAACCGATACAAAATTGT 59.310 36.000 4.01 4.01 44.86 2.71
237 238 7.704271 TCACAAACCGATACAAAATTGTGTTA 58.296 30.769 6.57 0.00 44.74 2.41
257 258 7.433719 TGTGTTAAATGATTTTCACGGTTCAAG 59.566 33.333 15.48 0.00 32.77 3.02
264 265 0.745128 TTCACGGTTCAAGCGGTTGT 60.745 50.000 25.18 4.41 44.33 3.32
278 279 1.003118 CGGTTGTGGGAGATTTGAGGA 59.997 52.381 0.00 0.00 0.00 3.71
316 317 0.741221 TACGCAACGCATATGCCACA 60.741 50.000 21.77 0.00 40.72 4.17
359 360 2.622629 CGATGCAGCGTTCATCCG 59.377 61.111 17.73 0.00 37.60 4.18
420 481 3.982576 AACAAGAAGGCGGTAACAAAG 57.017 42.857 0.00 0.00 0.00 2.77
459 522 5.789643 TCAAAACATCCTTTTCTTGAGGG 57.210 39.130 0.00 0.00 34.93 4.30
483 546 6.478016 GGACGGTAACAAAATATCCTACTCAC 59.522 42.308 0.00 0.00 0.00 3.51
493 556 0.242825 TCCTACTCACGAAAGGCACG 59.757 55.000 0.00 0.00 0.00 5.34
588 652 1.492993 GGGGGTGAACAGAAGGAGCT 61.493 60.000 0.00 0.00 0.00 4.09
589 653 0.322008 GGGGTGAACAGAAGGAGCTG 60.322 60.000 0.00 0.00 41.63 4.24
608 674 4.331168 AGCTGACGACTGATTCTTTTATGC 59.669 41.667 0.00 0.00 0.00 3.14
634 700 2.033194 GCTTTTGCTACGCTCCGGT 61.033 57.895 0.00 0.00 43.35 5.28
637 717 3.636313 TTTGCTACGCTCCGGTCCG 62.636 63.158 3.60 3.60 0.00 4.79
654 734 0.320421 CCGGTACCTGACAACTGTGG 60.320 60.000 10.90 0.00 0.00 4.17
664 744 2.203394 AACTGTGGCCTGGCTGTG 60.203 61.111 19.68 9.05 0.00 3.66
745 825 4.826274 AGAAGAGACCGAATGGAATGAA 57.174 40.909 0.00 0.00 39.21 2.57
747 827 5.121811 AGAAGAGACCGAATGGAATGAATG 58.878 41.667 0.00 0.00 39.21 2.67
754 834 4.878397 ACCGAATGGAATGAATGAAGAGAC 59.122 41.667 0.00 0.00 39.21 3.36
760 840 9.075678 GAATGGAATGAATGAAGAGACCATAAT 57.924 33.333 0.00 0.00 36.13 1.28
761 841 9.430399 AATGGAATGAATGAAGAGACCATAATT 57.570 29.630 0.00 0.00 36.13 1.40
805 885 3.294214 GAATGCATTGGAGACCCATTCT 58.706 45.455 18.59 0.00 43.12 2.40
806 886 2.905415 TGCATTGGAGACCCATTCTT 57.095 45.000 0.00 0.00 43.12 2.52
819 899 4.583871 ACCCATTCTTCATGAGTTGAGAC 58.416 43.478 0.00 0.00 35.27 3.36
846 934 3.136345 TTGCTTGGCAACTGCACCG 62.136 57.895 13.02 0.00 43.99 4.94
848 936 3.594775 CTTGGCAACTGCACCGCA 61.595 61.111 3.76 0.00 44.36 5.69
849 937 3.829272 CTTGGCAACTGCACCGCAC 62.829 63.158 3.76 0.00 44.36 5.34
902 1001 2.493278 CCTCTTGGCCAAAATGGTACTG 59.507 50.000 20.91 4.34 40.46 2.74
910 1009 4.376340 CCAAAATGGTACTGGCTCATTC 57.624 45.455 0.00 0.00 31.35 2.67
915 1014 3.616956 TGGTACTGGCTCATTCTCTTG 57.383 47.619 0.00 0.00 0.00 3.02
936 1037 4.692228 TGCTTGTTCCAACTTCATTTTCC 58.308 39.130 0.00 0.00 0.00 3.13
939 1040 5.506649 GCTTGTTCCAACTTCATTTTCCGTA 60.507 40.000 0.00 0.00 0.00 4.02
978 1079 3.363378 CGTTCTCACTGCTGTGTGATTTC 60.363 47.826 23.42 16.79 44.66 2.17
1048 1152 6.568462 CGGCAAATTACAATCCATGGTATCTC 60.568 42.308 12.58 0.00 0.00 2.75
1054 1158 3.152341 CAATCCATGGTATCTCCCTTGC 58.848 50.000 12.58 0.00 34.77 4.01
1078 1182 2.092699 CACCCCATCTTCTCTCCTTTCC 60.093 54.545 0.00 0.00 0.00 3.13
1138 1244 6.801862 GCTTATCATGCCATATCGTAAAAACC 59.198 38.462 0.00 0.00 0.00 3.27
1289 1398 8.724229 TCAACAGATAACTGAAATTCATGTCAG 58.276 33.333 7.05 8.99 46.03 3.51
1349 1458 5.186198 TGAATTTTCTGGCTTAGCTACTCC 58.814 41.667 3.59 0.00 0.00 3.85
1350 1459 5.045578 TGAATTTTCTGGCTTAGCTACTCCT 60.046 40.000 3.59 0.00 0.00 3.69
1383 1492 0.031585 AGCGCTGTAAACTGTCGTGA 59.968 50.000 10.39 0.00 0.00 4.35
1529 1638 9.779237 GTTATGTGTTTATTTCTCATATCGACG 57.221 33.333 0.00 0.00 0.00 5.12
1574 1683 7.850935 ATTAATAGGAATACAAGGAGGACGA 57.149 36.000 0.00 0.00 0.00 4.20
1579 1688 4.225267 AGGAATACAAGGAGGACGACAAAT 59.775 41.667 0.00 0.00 0.00 2.32
1605 1714 4.742138 GCTGAAACCAATGGCAAGGTAAAA 60.742 41.667 14.37 3.84 37.07 1.52
1615 1724 7.148440 CCAATGGCAAGGTAAAATTACATGTTG 60.148 37.037 2.30 6.74 35.37 3.33
1813 1922 7.015098 TGGCAATTCTTTCTTCATTCTTGGTAA 59.985 33.333 0.00 0.00 0.00 2.85
1814 1923 7.872483 GGCAATTCTTTCTTCATTCTTGGTAAA 59.128 33.333 0.00 0.00 0.00 2.01
1815 1924 9.428097 GCAATTCTTTCTTCATTCTTGGTAAAT 57.572 29.630 0.00 0.00 0.00 1.40
1858 1970 9.148104 AGTTTCCGTTGTACATAAACTAGATTC 57.852 33.333 17.53 3.91 38.31 2.52
1861 1973 5.331309 CCGTTGTACATAAACTAGATTCGCG 60.331 44.000 0.00 0.00 0.00 5.87
1880 1992 6.340537 TCGCGTTCAGGATTTTACTATTTC 57.659 37.500 5.77 0.00 0.00 2.17
1902 2014 9.743057 ATTTCGTCAACATGTTTCTGAAATTTA 57.257 25.926 23.15 9.93 32.57 1.40
1942 2054 8.397906 TCTATGCTTGTTATTGTGCTATTGTTC 58.602 33.333 0.00 0.00 0.00 3.18
1965 2077 7.062749 TCTTAGCAACCCATACATAAGTAGG 57.937 40.000 0.00 0.00 32.86 3.18
1975 2087 6.934645 CCCATACATAAGTAGGTGGTAACATG 59.065 42.308 0.00 0.00 41.02 3.21
1976 2088 6.426937 CCATACATAAGTAGGTGGTAACATGC 59.573 42.308 0.00 0.00 41.02 4.06
1999 2143 8.145316 TGCGGTATGAAAGGTAAAATACATAC 57.855 34.615 0.00 0.00 39.18 2.39
2043 2187 7.062371 CCGGAGAAACATTTATATTCTCGCTAG 59.938 40.741 0.00 0.00 46.36 3.42
2048 2192 9.569212 GAAACATTTATATTCTCGCTAGAAACG 57.431 33.333 4.61 0.00 44.75 3.60
2049 2193 8.644318 AACATTTATATTCTCGCTAGAAACGT 57.356 30.769 4.61 0.00 44.75 3.99
2077 2221 9.289782 GCAAGGATTAGTATTTTATGACCTCAT 57.710 33.333 0.00 0.00 40.22 2.90
2129 2306 4.620982 ACCAGCAAATTAAGAAGCAACAC 58.379 39.130 0.00 0.00 0.00 3.32
2172 2349 1.265454 ACGGGCCGGAAATCTCTCTT 61.265 55.000 31.78 0.20 0.00 2.85
2219 2396 1.406180 TGCCGGAGCATGAATTCAATG 59.594 47.619 13.09 12.00 46.52 2.82
2220 2397 1.677576 GCCGGAGCATGAATTCAATGA 59.322 47.619 13.09 0.00 39.53 2.57
2240 2417 2.825861 AAATGAAGCCAACCTTGCTG 57.174 45.000 0.00 0.00 39.48 4.41
2256 2433 6.294473 ACCTTGCTGATCTGGTAATATGAAG 58.706 40.000 1.46 0.00 0.00 3.02
2271 2448 0.823356 TGAAGCTGTCCTGGGTTTGC 60.823 55.000 0.00 0.00 0.00 3.68
2562 2739 1.227002 GTCGTTGATCCTCTCCGGC 60.227 63.158 0.00 0.00 0.00 6.13
2564 2741 2.506472 GTTGATCCTCTCCGGCCC 59.494 66.667 0.00 0.00 0.00 5.80
2617 2826 2.435586 CACTCCCCGAAGCTGCTG 60.436 66.667 1.35 0.00 0.00 4.41
3005 3214 3.621394 GCGCGCTTCTCGACATCC 61.621 66.667 26.67 0.00 41.67 3.51
3095 3323 1.447945 TGCATACATGGACGTGGTTG 58.552 50.000 0.00 0.00 0.00 3.77
3097 3325 1.948611 GCATACATGGACGTGGTTGGT 60.949 52.381 0.00 0.00 0.00 3.67
3143 3371 4.301505 TTGCTGCGATCAGGAACC 57.698 55.556 0.00 0.00 44.16 3.62
3169 3397 2.993853 CAGCTCCCTGAGAACCCC 59.006 66.667 0.00 0.00 41.77 4.95
3171 3399 2.683933 GCTCCCTGAGAACCCCGA 60.684 66.667 0.00 0.00 0.00 5.14
3176 3404 2.182030 CTGAGAACCCCGACGAGC 59.818 66.667 0.00 0.00 0.00 5.03
3178 3406 2.182030 GAGAACCCCGACGAGCTG 59.818 66.667 0.00 0.00 0.00 4.24
3490 3718 3.643978 GCGACGCTGCCCATCATC 61.644 66.667 13.73 0.00 0.00 2.92
3904 4132 1.718757 GCACCATCATCGTCAAGGCC 61.719 60.000 0.00 0.00 0.00 5.19
4089 4317 2.122167 AGGACGAGGAGGACGATGC 61.122 63.158 0.00 0.00 34.70 3.91
4128 4356 1.000607 GCAAGTGTGACCAGTACTCGA 60.001 52.381 0.00 0.00 0.00 4.04
4129 4357 2.352814 GCAAGTGTGACCAGTACTCGAT 60.353 50.000 0.00 0.00 0.00 3.59
4130 4358 3.502920 CAAGTGTGACCAGTACTCGATC 58.497 50.000 0.00 0.00 0.00 3.69
4131 4359 1.738350 AGTGTGACCAGTACTCGATCG 59.262 52.381 9.36 9.36 0.00 3.69
4139 4367 3.812053 ACCAGTACTCGATCGTATACCAC 59.188 47.826 15.94 6.04 0.00 4.16
4142 4370 5.333952 CCAGTACTCGATCGTATACCACTTC 60.334 48.000 15.94 0.00 0.00 3.01
4143 4371 5.466058 CAGTACTCGATCGTATACCACTTCT 59.534 44.000 15.94 0.00 0.00 2.85
4160 4388 5.811613 CCACTTCTTTCTTTCAACATGCAAA 59.188 36.000 0.00 0.00 0.00 3.68
4162 4390 6.019318 CACTTCTTTCTTTCAACATGCAAAGG 60.019 38.462 10.81 0.00 31.55 3.11
4163 4391 5.596836 TCTTTCTTTCAACATGCAAAGGT 57.403 34.783 10.81 0.00 31.55 3.50
4164 4392 5.976458 TCTTTCTTTCAACATGCAAAGGTT 58.024 33.333 10.81 0.00 31.55 3.50
4165 4393 5.811613 TCTTTCTTTCAACATGCAAAGGTTG 59.188 36.000 18.03 18.03 44.35 3.77
4184 4412 3.348647 TGATGTGATGGTTGTGTAGGG 57.651 47.619 0.00 0.00 0.00 3.53
4209 4437 1.225855 GGTCGTGAAGTTGTCATGCA 58.774 50.000 0.00 0.00 42.24 3.96
4210 4438 1.069906 GGTCGTGAAGTTGTCATGCAC 60.070 52.381 0.00 0.00 42.24 4.57
4211 4439 1.597195 GTCGTGAAGTTGTCATGCACA 59.403 47.619 0.00 0.00 42.24 4.57
4212 4440 2.224079 GTCGTGAAGTTGTCATGCACAT 59.776 45.455 0.00 0.00 42.24 3.21
4213 4441 2.223845 TCGTGAAGTTGTCATGCACATG 59.776 45.455 4.18 4.18 42.24 3.21
4214 4442 2.322161 GTGAAGTTGTCATGCACATGC 58.678 47.619 5.73 0.00 38.90 4.06
4225 4453 1.430632 GCACATGCACTTCATCCCG 59.569 57.895 0.00 0.00 41.59 5.14
4264 4492 3.199071 ACCTCGTCATTAAGTATTGCCCA 59.801 43.478 0.00 0.00 0.00 5.36
4269 4497 4.634004 CGTCATTAAGTATTGCCCAGTTCA 59.366 41.667 0.00 0.00 0.00 3.18
4270 4498 5.296780 CGTCATTAAGTATTGCCCAGTTCAT 59.703 40.000 0.00 0.00 0.00 2.57
4271 4499 6.498304 GTCATTAAGTATTGCCCAGTTCATG 58.502 40.000 0.00 0.00 0.00 3.07
4273 4501 6.663093 TCATTAAGTATTGCCCAGTTCATGTT 59.337 34.615 0.00 0.00 0.00 2.71
4274 4502 4.789012 AAGTATTGCCCAGTTCATGTTG 57.211 40.909 0.00 0.00 0.00 3.33
4275 4503 3.766545 AGTATTGCCCAGTTCATGTTGT 58.233 40.909 0.00 0.00 0.00 3.32
4280 4522 2.499289 TGCCCAGTTCATGTTGTGTTTT 59.501 40.909 0.00 0.00 0.00 2.43
4288 4530 4.462508 TCATGTTGTGTTTTCTGGCAAA 57.537 36.364 0.00 0.00 0.00 3.68
4290 4532 4.159321 TCATGTTGTGTTTTCTGGCAAAGA 59.841 37.500 0.00 0.00 0.00 2.52
4291 4533 4.734398 TGTTGTGTTTTCTGGCAAAGAT 57.266 36.364 0.00 0.00 33.93 2.40
4292 4534 5.083533 TGTTGTGTTTTCTGGCAAAGATT 57.916 34.783 0.00 0.00 33.93 2.40
4294 4536 5.936956 TGTTGTGTTTTCTGGCAAAGATTTT 59.063 32.000 0.00 0.00 33.93 1.82
4295 4537 6.128336 TGTTGTGTTTTCTGGCAAAGATTTTG 60.128 34.615 0.00 0.00 33.93 2.44
4296 4538 4.874966 TGTGTTTTCTGGCAAAGATTTTGG 59.125 37.500 3.97 0.00 33.93 3.28
4297 4539 3.876320 TGTTTTCTGGCAAAGATTTTGGC 59.124 39.130 17.88 17.88 44.16 4.52
4298 4540 2.437200 TTCTGGCAAAGATTTTGGCG 57.563 45.000 18.95 14.64 46.47 5.69
4299 4541 0.038343 TCTGGCAAAGATTTTGGCGC 60.038 50.000 18.95 0.00 46.47 6.53
4300 4542 0.037975 CTGGCAAAGATTTTGGCGCT 60.038 50.000 18.95 0.00 46.47 5.92
4307 4549 3.831715 AAGATTTTGGCGCTACAAGTC 57.168 42.857 7.64 6.56 0.00 3.01
4310 4552 3.821033 AGATTTTGGCGCTACAAGTCTTT 59.179 39.130 7.64 0.00 0.00 2.52
4311 4553 3.619233 TTTTGGCGCTACAAGTCTTTC 57.381 42.857 7.64 0.00 0.00 2.62
4315 4557 1.415374 GCGCTACAAGTCTTTCGTCA 58.585 50.000 0.00 0.00 0.00 4.35
4317 4559 2.028165 GCGCTACAAGTCTTTCGTCATC 59.972 50.000 0.00 0.00 0.00 2.92
4318 4560 3.502920 CGCTACAAGTCTTTCGTCATCT 58.497 45.455 0.00 0.00 0.00 2.90
4320 4562 4.201532 CGCTACAAGTCTTTCGTCATCTTG 60.202 45.833 0.00 0.00 40.54 3.02
4323 4565 5.659048 ACAAGTCTTTCGTCATCTTGTTC 57.341 39.130 0.00 0.00 43.68 3.18
4324 4566 5.360591 ACAAGTCTTTCGTCATCTTGTTCT 58.639 37.500 0.00 0.00 43.68 3.01
4325 4567 5.463724 ACAAGTCTTTCGTCATCTTGTTCTC 59.536 40.000 0.00 0.00 43.68 2.87
4326 4568 4.561105 AGTCTTTCGTCATCTTGTTCTCC 58.439 43.478 0.00 0.00 0.00 3.71
4327 4569 4.282195 AGTCTTTCGTCATCTTGTTCTCCT 59.718 41.667 0.00 0.00 0.00 3.69
4328 4570 5.477291 AGTCTTTCGTCATCTTGTTCTCCTA 59.523 40.000 0.00 0.00 0.00 2.94
4330 4572 6.254589 GTCTTTCGTCATCTTGTTCTCCTATG 59.745 42.308 0.00 0.00 0.00 2.23
4332 4574 6.471233 TTCGTCATCTTGTTCTCCTATGAT 57.529 37.500 0.00 0.00 0.00 2.45
4333 4575 6.471233 TCGTCATCTTGTTCTCCTATGATT 57.529 37.500 0.00 0.00 0.00 2.57
4334 4576 6.878317 TCGTCATCTTGTTCTCCTATGATTT 58.122 36.000 0.00 0.00 0.00 2.17
4335 4577 6.980978 TCGTCATCTTGTTCTCCTATGATTTC 59.019 38.462 0.00 0.00 0.00 2.17
4336 4578 6.983307 CGTCATCTTGTTCTCCTATGATTTCT 59.017 38.462 0.00 0.00 0.00 2.52
4338 4580 9.171877 GTCATCTTGTTCTCCTATGATTTCTTT 57.828 33.333 0.00 0.00 0.00 2.52
4339 4581 9.745018 TCATCTTGTTCTCCTATGATTTCTTTT 57.255 29.630 0.00 0.00 0.00 2.27
4341 4583 8.567285 TCTTGTTCTCCTATGATTTCTTTTCC 57.433 34.615 0.00 0.00 0.00 3.13
4343 4585 8.567285 TTGTTCTCCTATGATTTCTTTTCCTC 57.433 34.615 0.00 0.00 0.00 3.71
4344 4586 7.112779 TGTTCTCCTATGATTTCTTTTCCTCC 58.887 38.462 0.00 0.00 0.00 4.30
4345 4587 6.891306 TCTCCTATGATTTCTTTTCCTCCA 57.109 37.500 0.00 0.00 0.00 3.86
4346 4588 7.457380 TCTCCTATGATTTCTTTTCCTCCAT 57.543 36.000 0.00 0.00 0.00 3.41
4347 4589 7.512992 TCTCCTATGATTTCTTTTCCTCCATC 58.487 38.462 0.00 0.00 0.00 3.51
4349 4591 7.056635 TCCTATGATTTCTTTTCCTCCATCAC 58.943 38.462 0.00 0.00 0.00 3.06
4350 4592 6.264067 CCTATGATTTCTTTTCCTCCATCACC 59.736 42.308 0.00 0.00 0.00 4.02
4351 4593 4.009675 TGATTTCTTTTCCTCCATCACCG 58.990 43.478 0.00 0.00 0.00 4.94
4352 4594 2.489938 TTCTTTTCCTCCATCACCGG 57.510 50.000 0.00 0.00 0.00 5.28
4354 4596 1.003118 TCTTTTCCTCCATCACCGGTG 59.997 52.381 29.26 29.26 0.00 4.94
4355 4597 0.768622 TTTTCCTCCATCACCGGTGT 59.231 50.000 32.74 18.15 0.00 4.16
4356 4598 1.646912 TTTCCTCCATCACCGGTGTA 58.353 50.000 32.74 20.21 0.00 2.90
4357 4599 1.191535 TTCCTCCATCACCGGTGTAG 58.808 55.000 32.74 24.58 0.00 2.74
4358 4600 0.040646 TCCTCCATCACCGGTGTAGT 59.959 55.000 32.74 17.87 0.00 2.73
4360 4602 1.407979 CCTCCATCACCGGTGTAGTAC 59.592 57.143 32.74 0.00 0.00 2.73
4361 4603 2.376109 CTCCATCACCGGTGTAGTACT 58.624 52.381 32.74 10.11 0.00 2.73
4362 4604 2.358267 CTCCATCACCGGTGTAGTACTC 59.642 54.545 32.74 0.00 0.00 2.59
4363 4605 1.407979 CCATCACCGGTGTAGTACTCC 59.592 57.143 32.74 10.79 0.00 3.85
4364 4606 1.407979 CATCACCGGTGTAGTACTCCC 59.592 57.143 32.74 7.48 0.00 4.30
4365 4607 0.700564 TCACCGGTGTAGTACTCCCT 59.299 55.000 32.74 0.00 0.00 4.20
4366 4608 1.101331 CACCGGTGTAGTACTCCCTC 58.899 60.000 26.95 0.00 0.00 4.30
4367 4609 0.033699 ACCGGTGTAGTACTCCCTCC 60.034 60.000 6.12 1.05 0.00 4.30
4368 4610 1.099879 CCGGTGTAGTACTCCCTCCG 61.100 65.000 20.62 20.62 36.85 4.63
4369 4611 1.099879 CGGTGTAGTACTCCCTCCGG 61.100 65.000 20.14 0.00 34.05 5.14
4370 4612 0.033699 GGTGTAGTACTCCCTCCGGT 60.034 60.000 9.84 0.00 0.00 5.28
4372 4614 0.257039 TGTAGTACTCCCTCCGGTCC 59.743 60.000 0.00 0.00 0.00 4.46
4373 4615 0.550432 GTAGTACTCCCTCCGGTCCT 59.450 60.000 0.00 0.00 0.00 3.85
4374 4616 1.064091 GTAGTACTCCCTCCGGTCCTT 60.064 57.143 0.00 0.00 0.00 3.36
4376 4618 1.203275 AGTACTCCCTCCGGTCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
4377 4619 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
4378 4620 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
4381 4623 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
4382 4624 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
4385 4627 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
4386 4628 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
4389 4631 5.364446 TCCGGTCCTTTTTACTCTGCATATA 59.636 40.000 0.00 0.00 0.00 0.86
4390 4632 6.053005 CCGGTCCTTTTTACTCTGCATATAA 58.947 40.000 0.00 0.00 0.00 0.98
4391 4633 6.202954 CCGGTCCTTTTTACTCTGCATATAAG 59.797 42.308 0.00 0.00 0.00 1.73
4392 4634 6.202954 CGGTCCTTTTTACTCTGCATATAAGG 59.797 42.308 0.00 0.00 33.79 2.69
4393 4635 7.280356 GGTCCTTTTTACTCTGCATATAAGGA 58.720 38.462 0.00 0.00 38.00 3.36
4394 4636 7.939588 GGTCCTTTTTACTCTGCATATAAGGAT 59.060 37.037 0.00 0.00 41.18 3.24
4395 4637 9.343539 GTCCTTTTTACTCTGCATATAAGGATT 57.656 33.333 0.00 0.00 41.18 3.01
4396 4638 9.342308 TCCTTTTTACTCTGCATATAAGGATTG 57.658 33.333 0.00 0.00 36.05 2.67
4397 4639 9.125026 CCTTTTTACTCTGCATATAAGGATTGT 57.875 33.333 0.00 0.00 34.26 2.71
4400 4642 8.893219 TTTACTCTGCATATAAGGATTGTCTG 57.107 34.615 0.00 0.00 0.00 3.51
4404 4646 7.129457 TCTGCATATAAGGATTGTCTGAAGT 57.871 36.000 0.00 0.00 0.00 3.01
4405 4647 7.212976 TCTGCATATAAGGATTGTCTGAAGTC 58.787 38.462 0.00 0.00 0.00 3.01
4406 4648 6.888105 TGCATATAAGGATTGTCTGAAGTCA 58.112 36.000 0.00 0.00 0.00 3.41
4407 4649 7.337938 TGCATATAAGGATTGTCTGAAGTCAA 58.662 34.615 0.00 0.00 0.00 3.18
4408 4650 7.828717 TGCATATAAGGATTGTCTGAAGTCAAA 59.171 33.333 0.00 0.00 0.00 2.69
4409 4651 8.125448 GCATATAAGGATTGTCTGAAGTCAAAC 58.875 37.037 0.00 0.00 0.00 2.93
4410 4652 9.388506 CATATAAGGATTGTCTGAAGTCAAACT 57.611 33.333 0.00 0.00 0.00 2.66
4496 5753 7.962918 ACAATATGAAAAGTAAAGTCATGACGC 59.037 33.333 19.85 11.51 34.01 5.19
4498 5755 5.940192 TGAAAAGTAAAGTCATGACGCAT 57.060 34.783 19.85 12.36 36.20 4.73
4499 5756 6.312399 TGAAAAGTAAAGTCATGACGCATT 57.688 33.333 19.85 17.32 36.20 3.56
4501 5758 7.866729 TGAAAAGTAAAGTCATGACGCATTTA 58.133 30.769 19.85 15.53 36.20 1.40
4502 5759 8.346300 TGAAAAGTAAAGTCATGACGCATTTAA 58.654 29.630 19.85 7.93 36.20 1.52
4503 5760 9.341899 GAAAAGTAAAGTCATGACGCATTTAAT 57.658 29.630 19.85 14.78 36.20 1.40
4504 5761 8.673626 AAAGTAAAGTCATGACGCATTTAATG 57.326 30.769 19.85 0.00 36.20 1.90
4505 5762 7.377766 AGTAAAGTCATGACGCATTTAATGT 57.622 32.000 19.85 5.84 36.20 2.71
4506 5763 7.816640 AGTAAAGTCATGACGCATTTAATGTT 58.183 30.769 19.85 2.19 36.20 2.71
4507 5764 6.932901 AAAGTCATGACGCATTTAATGTTG 57.067 33.333 19.85 2.71 36.20 3.33
4508 5765 5.627499 AGTCATGACGCATTTAATGTTGT 57.373 34.783 19.85 5.83 36.20 3.32
4509 5766 6.012658 AGTCATGACGCATTTAATGTTGTT 57.987 33.333 19.85 0.00 36.20 2.83
4510 5767 5.858049 AGTCATGACGCATTTAATGTTGTTG 59.142 36.000 19.85 3.20 36.20 3.33
4511 5768 5.855925 GTCATGACGCATTTAATGTTGTTGA 59.144 36.000 10.69 5.18 0.00 3.18
4512 5769 6.527722 GTCATGACGCATTTAATGTTGTTGAT 59.472 34.615 10.69 1.09 0.00 2.57
4514 5771 7.598118 TCATGACGCATTTAATGTTGTTGATTT 59.402 29.630 6.81 0.00 0.00 2.17
4516 5773 6.920210 TGACGCATTTAATGTTGTTGATTTCA 59.080 30.769 6.81 0.00 0.00 2.69
4517 5774 7.096271 TGACGCATTTAATGTTGTTGATTTCAC 60.096 33.333 6.81 0.00 0.00 3.18
4520 5777 8.222433 CGCATTTAATGTTGTTGATTTCACATT 58.778 29.630 6.81 0.00 0.00 2.71
4521 5778 9.532697 GCATTTAATGTTGTTGATTTCACATTC 57.467 29.630 6.81 0.00 0.00 2.67
4528 5785 9.985730 ATGTTGTTGATTTCACATTCTAAATGT 57.014 25.926 0.00 0.00 0.00 2.71
4529 5786 9.814899 TGTTGTTGATTTCACATTCTAAATGTT 57.185 25.926 2.65 0.00 0.00 2.71
4532 5789 9.814899 TGTTGATTTCACATTCTAAATGTTTGT 57.185 25.926 2.65 0.00 0.00 2.83
4578 5835 9.604626 CAAAGTTTATGAGATTTGACTTCAGAC 57.395 33.333 0.00 0.00 35.19 3.51
4581 6209 9.342308 AGTTTATGAGATTTGACTTCAGACAAA 57.658 29.630 6.87 6.87 41.98 2.83
4594 6222 8.726068 TGACTTCAGACAAATTTTATATGCGAA 58.274 29.630 0.00 0.00 0.00 4.70
4595 6223 9.214953 GACTTCAGACAAATTTTATATGCGAAG 57.785 33.333 0.00 0.00 0.00 3.79
4630 6258 5.481473 CGGAGGGAGTACTAGACTACTAGAT 59.519 48.000 10.60 0.00 46.34 1.98
4631 6259 6.014327 CGGAGGGAGTACTAGACTACTAGATT 60.014 46.154 10.60 0.00 46.34 2.40
4632 6260 7.178274 CGGAGGGAGTACTAGACTACTAGATTA 59.822 44.444 10.60 0.00 46.34 1.75
4635 6263 9.093458 AGGGAGTACTAGACTACTAGATTACTC 57.907 40.741 17.27 17.27 46.34 2.59
4643 6477 4.644498 ACTACTAGATTACTCCGAGCCTC 58.356 47.826 0.00 0.00 0.00 4.70
4656 6490 3.267860 GCCTCGAATGCTCAGGCG 61.268 66.667 0.00 0.00 43.35 5.52
4683 6526 2.963854 CCAGTCGCAGCCGCATAG 60.964 66.667 0.00 0.00 38.40 2.23
4695 6538 2.635899 GCATAGCGCATCTGCCAC 59.364 61.111 11.47 0.00 41.79 5.01
4702 6545 1.447838 CGCATCTGCCACCTACGTT 60.448 57.895 0.00 0.00 37.91 3.99
4789 6632 0.110373 GTGCCGCCACGACTTAAAAG 60.110 55.000 0.00 0.00 31.34 2.27
4792 6635 1.500396 CGCCACGACTTAAAAGCCC 59.500 57.895 0.00 0.00 0.00 5.19
4793 6636 1.231958 CGCCACGACTTAAAAGCCCA 61.232 55.000 0.00 0.00 0.00 5.36
4796 6639 0.879090 CACGACTTAAAAGCCCACCC 59.121 55.000 0.00 0.00 0.00 4.61
4797 6640 0.604511 ACGACTTAAAAGCCCACCCG 60.605 55.000 0.00 0.00 0.00 5.28
4799 6642 1.878948 CGACTTAAAAGCCCACCCGAA 60.879 52.381 0.00 0.00 0.00 4.30
4813 6657 2.049156 CGAAGCGCACTCCTCACA 60.049 61.111 11.47 0.00 0.00 3.58
4821 6665 0.948141 GCACTCCTCACACAGCAGTC 60.948 60.000 0.00 0.00 0.00 3.51
4822 6666 0.390492 CACTCCTCACACAGCAGTCA 59.610 55.000 0.00 0.00 0.00 3.41
4823 6667 0.678395 ACTCCTCACACAGCAGTCAG 59.322 55.000 0.00 0.00 0.00 3.51
4824 6668 0.678395 CTCCTCACACAGCAGTCAGT 59.322 55.000 0.00 0.00 0.00 3.41
4825 6669 1.889170 CTCCTCACACAGCAGTCAGTA 59.111 52.381 0.00 0.00 0.00 2.74
4826 6670 1.613925 TCCTCACACAGCAGTCAGTAC 59.386 52.381 0.00 0.00 0.00 2.73
4882 6726 1.373497 CAGCGACGAGAAGCCTGTT 60.373 57.895 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.366871 CATGTCGTTGTAGAGCGTGC 59.633 55.000 0.00 0.00 0.00 5.34
35 36 1.732732 GCTCATGTCGTTGTAGAGCGT 60.733 52.381 0.00 0.00 41.75 5.07
37 38 0.917259 CGCTCATGTCGTTGTAGAGC 59.083 55.000 0.00 0.00 46.07 4.09
76 77 1.004918 CTTCCCGCGTGTTCTTCCT 60.005 57.895 4.92 0.00 0.00 3.36
85 86 2.756283 CTCTCCTCCTTCCCGCGT 60.756 66.667 4.92 0.00 0.00 6.01
88 89 0.984995 AAAACCTCTCCTCCTTCCCG 59.015 55.000 0.00 0.00 0.00 5.14
93 94 2.310052 CCCATCAAAAACCTCTCCTCCT 59.690 50.000 0.00 0.00 0.00 3.69
110 111 1.075601 TTCTGACTTTCCTGGCCCAT 58.924 50.000 0.00 0.00 0.00 4.00
120 121 4.455606 CTCCCAAGTCTGTTTCTGACTTT 58.544 43.478 15.60 3.78 45.59 2.66
122 123 2.224402 GCTCCCAAGTCTGTTTCTGACT 60.224 50.000 4.01 4.01 42.82 3.41
132 133 0.832135 TCCGAACTGCTCCCAAGTCT 60.832 55.000 0.00 0.00 0.00 3.24
144 145 2.233305 AGTATGTGGGAGTCCGAACT 57.767 50.000 13.21 3.66 38.88 3.01
147 148 3.170717 AGAAAAGTATGTGGGAGTCCGA 58.829 45.455 2.26 0.00 35.24 4.55
157 158 8.827177 TCGAAGACAAATGTAGAAAAGTATGT 57.173 30.769 0.00 0.00 0.00 2.29
160 161 9.483916 TCAATCGAAGACAAATGTAGAAAAGTA 57.516 29.630 0.00 0.00 42.51 2.24
168 169 3.930229 CCCGTCAATCGAAGACAAATGTA 59.070 43.478 17.92 0.00 42.51 2.29
171 172 3.056107 TCTCCCGTCAATCGAAGACAAAT 60.056 43.478 17.92 0.00 42.51 2.32
182 183 3.430374 CGGACATAACTTCTCCCGTCAAT 60.430 47.826 0.00 0.00 33.02 2.57
185 186 1.202382 CCGGACATAACTTCTCCCGTC 60.202 57.143 0.00 0.00 35.61 4.79
186 187 0.822164 CCGGACATAACTTCTCCCGT 59.178 55.000 0.00 0.00 35.61 5.28
192 193 0.175073 AGCGGTCCGGACATAACTTC 59.825 55.000 34.40 15.14 0.00 3.01
195 196 0.108520 TGAAGCGGTCCGGACATAAC 60.109 55.000 34.40 19.98 0.00 1.89
196 197 0.108520 GTGAAGCGGTCCGGACATAA 60.109 55.000 34.40 11.76 0.00 1.90
197 198 1.252215 TGTGAAGCGGTCCGGACATA 61.252 55.000 34.40 9.84 0.00 2.29
204 205 0.953960 ATCGGTTTGTGAAGCGGTCC 60.954 55.000 10.29 0.00 46.13 4.46
211 212 6.565234 ACACAATTTTGTATCGGTTTGTGAA 58.435 32.000 13.97 0.00 44.01 3.18
212 213 6.137794 ACACAATTTTGTATCGGTTTGTGA 57.862 33.333 13.97 0.00 44.01 3.58
214 215 8.928270 TTTAACACAATTTTGTATCGGTTTGT 57.072 26.923 0.00 0.00 39.91 2.83
217 218 9.921637 ATCATTTAACACAATTTTGTATCGGTT 57.078 25.926 0.00 0.00 39.91 4.44
227 228 8.655651 ACCGTGAAAATCATTTAACACAATTT 57.344 26.923 15.79 0.00 30.29 1.82
230 231 7.258441 TGAACCGTGAAAATCATTTAACACAA 58.742 30.769 15.79 0.40 30.29 3.33
231 232 6.796426 TGAACCGTGAAAATCATTTAACACA 58.204 32.000 15.79 0.38 30.29 3.72
233 234 6.419413 GCTTGAACCGTGAAAATCATTTAACA 59.581 34.615 0.00 0.00 30.29 2.41
237 238 3.980775 CGCTTGAACCGTGAAAATCATTT 59.019 39.130 0.00 0.00 0.00 2.32
257 258 0.804989 CTCAAATCTCCCACAACCGC 59.195 55.000 0.00 0.00 0.00 5.68
264 265 2.187958 ACGTGATCCTCAAATCTCCCA 58.812 47.619 0.00 0.00 0.00 4.37
278 279 3.869246 CGTAAGGGCATTTCTAACGTGAT 59.131 43.478 0.00 0.00 0.00 3.06
281 282 2.004733 GCGTAAGGGCATTTCTAACGT 58.995 47.619 6.76 0.00 38.28 3.99
436 499 5.896678 TCCCTCAAGAAAAGGATGTTTTGAA 59.103 36.000 0.00 0.00 35.83 2.69
443 506 2.290323 ACCGTCCCTCAAGAAAAGGATG 60.290 50.000 0.00 0.00 35.83 3.51
459 522 6.197842 CGTGAGTAGGATATTTTGTTACCGTC 59.802 42.308 0.00 0.00 0.00 4.79
588 652 4.490743 TCGCATAAAAGAATCAGTCGTCA 58.509 39.130 0.00 0.00 0.00 4.35
589 653 5.460419 AGATCGCATAAAAGAATCAGTCGTC 59.540 40.000 0.00 0.00 0.00 4.20
634 700 0.677288 CACAGTTGTCAGGTACCGGA 59.323 55.000 9.46 11.03 0.00 5.14
637 717 0.605589 GGCCACAGTTGTCAGGTACC 60.606 60.000 2.73 2.73 0.00 3.34
654 734 0.607489 ACTCATTGACACAGCCAGGC 60.607 55.000 1.84 1.84 0.00 4.85
664 744 4.009675 TGGGCATCTTGTAACTCATTGAC 58.990 43.478 0.00 0.00 0.00 3.18
771 851 9.100197 TCTCCAATGCATTCCTATATACTGTAA 57.900 33.333 9.53 0.00 0.00 2.41
772 852 8.531982 GTCTCCAATGCATTCCTATATACTGTA 58.468 37.037 9.53 0.00 0.00 2.74
773 853 7.390027 GTCTCCAATGCATTCCTATATACTGT 58.610 38.462 9.53 0.00 0.00 3.55
774 854 6.820656 GGTCTCCAATGCATTCCTATATACTG 59.179 42.308 9.53 0.00 0.00 2.74
775 855 6.069963 GGGTCTCCAATGCATTCCTATATACT 60.070 42.308 9.53 0.00 0.00 2.12
776 856 6.116126 GGGTCTCCAATGCATTCCTATATAC 58.884 44.000 9.53 2.00 0.00 1.47
780 860 2.785269 TGGGTCTCCAATGCATTCCTAT 59.215 45.455 9.53 0.00 40.73 2.57
805 885 7.465916 GCAATATAAAGCGTCTCAACTCATGAA 60.466 37.037 0.00 0.00 37.67 2.57
806 886 6.018751 GCAATATAAAGCGTCTCAACTCATGA 60.019 38.462 0.00 0.00 36.38 3.07
846 934 2.997897 ACGAGAGACAGGGGGTGC 60.998 66.667 0.00 0.00 0.00 5.01
847 935 2.352032 GGACGAGAGACAGGGGGTG 61.352 68.421 0.00 0.00 0.00 4.61
848 936 2.037527 GGACGAGAGACAGGGGGT 59.962 66.667 0.00 0.00 0.00 4.95
849 937 2.037367 TGGACGAGAGACAGGGGG 59.963 66.667 0.00 0.00 0.00 5.40
850 938 2.352032 GGTGGACGAGAGACAGGGG 61.352 68.421 0.00 0.00 0.00 4.79
902 1001 2.163211 GGAACAAGCAAGAGAATGAGCC 59.837 50.000 0.00 0.00 0.00 4.70
978 1079 5.584253 TCTCCTCGTTTTCCTATCAAGAG 57.416 43.478 0.00 0.00 0.00 2.85
1033 1137 3.152341 GCAAGGGAGATACCATGGATTG 58.848 50.000 21.47 10.30 41.20 2.67
1048 1152 0.040204 AAGATGGGGTGAAGCAAGGG 59.960 55.000 0.00 0.00 0.00 3.95
1054 1158 2.476199 AGGAGAGAAGATGGGGTGAAG 58.524 52.381 0.00 0.00 0.00 3.02
1138 1244 7.915508 TGAAATAAAACGGTCACTATATGCAG 58.084 34.615 0.00 0.00 0.00 4.41
1327 1436 5.295540 CAGGAGTAGCTAAGCCAGAAAATTC 59.704 44.000 13.83 0.00 0.00 2.17
1359 1468 0.951040 ACAGTTTACAGCGCTCAGGC 60.951 55.000 7.13 0.00 0.00 4.85
1360 1469 1.071605 GACAGTTTACAGCGCTCAGG 58.928 55.000 7.13 0.00 0.00 3.86
1361 1470 0.710567 CGACAGTTTACAGCGCTCAG 59.289 55.000 7.13 0.00 0.00 3.35
1367 1476 3.303132 CCAAAGTCACGACAGTTTACAGC 60.303 47.826 0.00 0.00 0.00 4.40
1383 1492 4.722361 TTAAAACGGAGCAAACCAAAGT 57.278 36.364 0.00 0.00 0.00 2.66
1484 1593 3.933861 ACTTCAGAACAAAGTGGGAGT 57.066 42.857 0.00 0.00 35.68 3.85
1572 1681 3.624326 TTGGTTTCAGCTGATTTGTCG 57.376 42.857 19.04 0.00 0.00 4.35
1574 1683 3.555586 GCCATTGGTTTCAGCTGATTTGT 60.556 43.478 19.04 0.00 0.00 2.83
1579 1688 1.614903 CTTGCCATTGGTTTCAGCTGA 59.385 47.619 13.74 13.74 0.00 4.26
1615 1724 4.918583 GCACGGAGTAGTAGCTATTTGATC 59.081 45.833 0.00 0.00 41.61 2.92
1677 1786 4.260985 TCATGTGTTTCCGACTATGCATT 58.739 39.130 3.54 0.00 0.00 3.56
1837 1949 5.331309 CGCGAATCTAGTTTATGTACAACGG 60.331 44.000 0.00 0.00 0.00 4.44
1858 1970 5.188194 CGAAATAGTAAAATCCTGAACGCG 58.812 41.667 3.53 3.53 0.00 6.01
1861 1973 8.500773 TGTTGACGAAATAGTAAAATCCTGAAC 58.499 33.333 0.00 0.00 0.00 3.18
1916 2028 7.864108 ACAATAGCACAATAACAAGCATAGA 57.136 32.000 0.00 0.00 0.00 1.98
1942 2054 6.706270 CACCTACTTATGTATGGGTTGCTAAG 59.294 42.308 0.00 0.00 28.42 2.18
1965 2077 3.064820 CCTTTCATACCGCATGTTACCAC 59.935 47.826 0.00 0.00 35.96 4.16
1975 2087 8.145316 TGTATGTATTTTACCTTTCATACCGC 57.855 34.615 0.00 0.00 37.72 5.68
1976 2088 9.537192 TCTGTATGTATTTTACCTTTCATACCG 57.463 33.333 0.00 0.00 37.72 4.02
2017 2161 5.696724 AGCGAGAATATAAATGTTTCTCCGG 59.303 40.000 0.00 0.00 41.38 5.14
2043 2187 9.783256 ATAAAATACTAATCCTTGCAACGTTTC 57.217 29.630 0.00 0.00 0.00 2.78
2048 2192 8.903820 AGGTCATAAAATACTAATCCTTGCAAC 58.096 33.333 0.00 0.00 0.00 4.17
2049 2193 9.120538 GAGGTCATAAAATACTAATCCTTGCAA 57.879 33.333 0.00 0.00 0.00 4.08
2096 2270 3.896648 ATTTGCTGGTCAAGTACAACG 57.103 42.857 0.00 0.00 35.84 4.10
2129 2306 9.205916 CGTGTTCATTAGATTATTAAAACACCG 57.794 33.333 8.85 2.48 41.15 4.94
2172 2349 2.559698 TCAAAAGCCCGAACTGATGA 57.440 45.000 0.00 0.00 0.00 2.92
2219 2396 3.062042 CAGCAAGGTTGGCTTCATTTTC 58.938 45.455 0.00 0.00 40.23 2.29
2220 2397 2.699846 TCAGCAAGGTTGGCTTCATTTT 59.300 40.909 0.00 0.00 40.23 1.82
2240 2417 5.931146 CAGGACAGCTTCATATTACCAGATC 59.069 44.000 0.00 0.00 0.00 2.75
2256 2433 1.109323 ACAAGCAAACCCAGGACAGC 61.109 55.000 0.00 0.00 0.00 4.40
2271 2448 3.613737 CCAAAGTTCACTGCAACAACAAG 59.386 43.478 5.22 0.00 0.00 3.16
2441 2618 3.353836 CCCACAAAGGTGTCGGCG 61.354 66.667 0.00 0.00 43.71 6.46
2515 2692 4.260334 GCAATGCAACCAAGTGAAAGAAAC 60.260 41.667 0.00 0.00 0.00 2.78
2562 2739 4.828296 GGAGCCCCTGCATGTGGG 62.828 72.222 16.09 16.09 45.22 4.61
2617 2826 3.451894 CATTTGCACCCCTCCGGC 61.452 66.667 0.00 0.00 33.26 6.13
2923 3132 3.798954 GAAGGCGATGAGGGCGAGG 62.799 68.421 0.00 0.00 37.59 4.63
3077 3305 0.732571 CCAACCACGTCCATGTATGC 59.267 55.000 0.00 0.00 0.00 3.14
3081 3309 2.871096 ATAACCAACCACGTCCATGT 57.129 45.000 0.00 0.00 0.00 3.21
3082 3310 4.481463 GAAAATAACCAACCACGTCCATG 58.519 43.478 0.00 0.00 0.00 3.66
3084 3312 2.885894 GGAAAATAACCAACCACGTCCA 59.114 45.455 0.00 0.00 0.00 4.02
3086 3314 2.549329 ACGGAAAATAACCAACCACGTC 59.451 45.455 0.00 0.00 0.00 4.34
3087 3315 2.291190 CACGGAAAATAACCAACCACGT 59.709 45.455 0.00 0.00 0.00 4.49
3088 3316 2.918968 GCACGGAAAATAACCAACCACG 60.919 50.000 0.00 0.00 0.00 4.94
3089 3317 2.295070 AGCACGGAAAATAACCAACCAC 59.705 45.455 0.00 0.00 0.00 4.16
3090 3318 2.294791 CAGCACGGAAAATAACCAACCA 59.705 45.455 0.00 0.00 0.00 3.67
3095 3323 4.612943 TGAAAACAGCACGGAAAATAACC 58.387 39.130 0.00 0.00 0.00 2.85
3097 3325 4.339814 ACCTGAAAACAGCACGGAAAATAA 59.660 37.500 0.00 0.00 0.00 1.40
3143 3371 1.523258 CAGGGAGCTGCAGATTCCG 60.523 63.158 23.51 14.46 31.59 4.30
3169 3397 0.651031 TGATCTCGTACAGCTCGTCG 59.349 55.000 0.00 0.00 0.00 5.12
3176 3404 2.159324 TGCTTCTGCTGATCTCGTACAG 60.159 50.000 0.00 0.00 40.48 2.74
3178 3406 2.568696 TGCTTCTGCTGATCTCGTAC 57.431 50.000 0.00 0.00 40.48 3.67
3454 3682 1.817099 CGGCTGCATCTGGAAGTCC 60.817 63.158 0.50 0.00 33.76 3.85
3490 3718 1.890979 GATGAGCATGGTCAGCGGG 60.891 63.158 29.35 0.00 37.01 6.13
3949 4177 1.486439 GGTTGATGTTGTTGCCGTTG 58.514 50.000 0.00 0.00 0.00 4.10
4096 4324 3.560251 ACTTGCTGCTCCACCGGT 61.560 61.111 0.00 0.00 0.00 5.28
4099 4327 1.227943 TCACACTTGCTGCTCCACC 60.228 57.895 0.00 0.00 0.00 4.61
4128 4356 7.876068 TGTTGAAAGAAAGAAGTGGTATACGAT 59.124 33.333 0.00 0.00 0.00 3.73
4129 4357 7.211573 TGTTGAAAGAAAGAAGTGGTATACGA 58.788 34.615 0.00 0.00 0.00 3.43
4130 4358 7.416154 TGTTGAAAGAAAGAAGTGGTATACG 57.584 36.000 0.00 0.00 0.00 3.06
4131 4359 7.750903 GCATGTTGAAAGAAAGAAGTGGTATAC 59.249 37.037 0.00 0.00 0.00 1.47
4139 4367 6.044682 ACCTTTGCATGTTGAAAGAAAGAAG 58.955 36.000 12.77 0.00 31.89 2.85
4142 4370 5.811613 TCAACCTTTGCATGTTGAAAGAAAG 59.188 36.000 18.89 3.21 45.64 2.62
4143 4371 5.728471 TCAACCTTTGCATGTTGAAAGAAA 58.272 33.333 18.89 2.35 45.64 2.52
4160 4388 3.228188 ACACAACCATCACATCAACCT 57.772 42.857 0.00 0.00 0.00 3.50
4162 4390 3.440173 CCCTACACAACCATCACATCAAC 59.560 47.826 0.00 0.00 0.00 3.18
4163 4391 3.073798 ACCCTACACAACCATCACATCAA 59.926 43.478 0.00 0.00 0.00 2.57
4164 4392 2.642311 ACCCTACACAACCATCACATCA 59.358 45.455 0.00 0.00 0.00 3.07
4165 4393 3.350219 ACCCTACACAACCATCACATC 57.650 47.619 0.00 0.00 0.00 3.06
4166 4394 3.806949 AACCCTACACAACCATCACAT 57.193 42.857 0.00 0.00 0.00 3.21
4167 4395 3.586470 AAACCCTACACAACCATCACA 57.414 42.857 0.00 0.00 0.00 3.58
4168 4396 4.500716 CCAAAAACCCTACACAACCATCAC 60.501 45.833 0.00 0.00 0.00 3.06
4184 4412 4.086199 TGACAACTTCACGACCAAAAAC 57.914 40.909 0.00 0.00 0.00 2.43
4209 4437 1.003580 AGAACGGGATGAAGTGCATGT 59.996 47.619 0.00 0.00 37.34 3.21
4210 4438 1.742761 AGAACGGGATGAAGTGCATG 58.257 50.000 0.00 0.00 37.34 4.06
4211 4439 2.496899 AAGAACGGGATGAAGTGCAT 57.503 45.000 0.00 0.00 40.77 3.96
4212 4440 2.151202 GAAAGAACGGGATGAAGTGCA 58.849 47.619 0.00 0.00 0.00 4.57
4213 4441 2.160417 CAGAAAGAACGGGATGAAGTGC 59.840 50.000 0.00 0.00 0.00 4.40
4214 4442 3.403038 ACAGAAAGAACGGGATGAAGTG 58.597 45.455 0.00 0.00 0.00 3.16
4224 4452 2.864343 AGGTTCGTCAACAGAAAGAACG 59.136 45.455 0.00 0.00 41.28 3.95
4225 4453 3.060473 CGAGGTTCGTCAACAGAAAGAAC 60.060 47.826 0.00 0.00 40.09 3.01
4260 4488 2.888834 AAACACAACATGAACTGGGC 57.111 45.000 0.00 0.00 0.00 5.36
4264 4492 3.446873 TGCCAGAAAACACAACATGAACT 59.553 39.130 0.00 0.00 0.00 3.01
4269 4497 4.734398 TCTTTGCCAGAAAACACAACAT 57.266 36.364 0.00 0.00 0.00 2.71
4270 4498 4.734398 ATCTTTGCCAGAAAACACAACA 57.266 36.364 0.00 0.00 34.16 3.33
4271 4499 6.250089 CAAAATCTTTGCCAGAAAACACAAC 58.750 36.000 0.00 0.00 34.16 3.32
4273 4501 4.874966 CCAAAATCTTTGCCAGAAAACACA 59.125 37.500 0.00 0.00 34.16 3.72
4274 4502 4.260743 GCCAAAATCTTTGCCAGAAAACAC 60.261 41.667 0.00 0.00 34.16 3.32
4275 4503 3.876320 GCCAAAATCTTTGCCAGAAAACA 59.124 39.130 0.00 0.00 34.16 2.83
4280 4522 0.038343 GCGCCAAAATCTTTGCCAGA 60.038 50.000 0.00 0.00 35.33 3.86
4288 4530 3.059352 AGACTTGTAGCGCCAAAATCT 57.941 42.857 2.29 5.47 0.00 2.40
4290 4532 3.364964 CGAAAGACTTGTAGCGCCAAAAT 60.365 43.478 2.29 0.00 0.00 1.82
4291 4533 2.032377 CGAAAGACTTGTAGCGCCAAAA 60.032 45.455 2.29 0.00 0.00 2.44
4292 4534 1.529438 CGAAAGACTTGTAGCGCCAAA 59.471 47.619 2.29 0.00 0.00 3.28
4294 4536 0.032952 ACGAAAGACTTGTAGCGCCA 59.967 50.000 2.29 0.00 0.00 5.69
4295 4537 0.714439 GACGAAAGACTTGTAGCGCC 59.286 55.000 2.29 0.00 0.00 6.53
4296 4538 1.415374 TGACGAAAGACTTGTAGCGC 58.585 50.000 0.00 0.00 0.00 5.92
4297 4539 3.502920 AGATGACGAAAGACTTGTAGCG 58.497 45.455 0.00 0.00 0.00 4.26
4298 4540 4.686554 ACAAGATGACGAAAGACTTGTAGC 59.313 41.667 0.00 0.00 45.64 3.58
4299 4541 6.642950 AGAACAAGATGACGAAAGACTTGTAG 59.357 38.462 0.00 0.00 46.37 2.74
4300 4542 6.513180 AGAACAAGATGACGAAAGACTTGTA 58.487 36.000 0.00 0.00 46.37 2.41
4307 4549 6.333416 TCATAGGAGAACAAGATGACGAAAG 58.667 40.000 0.00 0.00 0.00 2.62
4310 4552 6.471233 AATCATAGGAGAACAAGATGACGA 57.529 37.500 0.00 0.00 29.75 4.20
4311 4553 6.983307 AGAAATCATAGGAGAACAAGATGACG 59.017 38.462 0.00 0.00 29.75 4.35
4315 4557 9.183368 GGAAAAGAAATCATAGGAGAACAAGAT 57.817 33.333 0.00 0.00 0.00 2.40
4317 4559 8.572855 AGGAAAAGAAATCATAGGAGAACAAG 57.427 34.615 0.00 0.00 0.00 3.16
4318 4560 7.611855 GGAGGAAAAGAAATCATAGGAGAACAA 59.388 37.037 0.00 0.00 0.00 2.83
4320 4562 7.112779 TGGAGGAAAAGAAATCATAGGAGAAC 58.887 38.462 0.00 0.00 0.00 3.01
4323 4565 7.228308 GTGATGGAGGAAAAGAAATCATAGGAG 59.772 40.741 0.00 0.00 0.00 3.69
4324 4566 7.056635 GTGATGGAGGAAAAGAAATCATAGGA 58.943 38.462 0.00 0.00 0.00 2.94
4325 4567 6.264067 GGTGATGGAGGAAAAGAAATCATAGG 59.736 42.308 0.00 0.00 0.00 2.57
4326 4568 6.017605 CGGTGATGGAGGAAAAGAAATCATAG 60.018 42.308 0.00 0.00 0.00 2.23
4327 4569 5.822519 CGGTGATGGAGGAAAAGAAATCATA 59.177 40.000 0.00 0.00 0.00 2.15
4328 4570 4.641989 CGGTGATGGAGGAAAAGAAATCAT 59.358 41.667 0.00 0.00 0.00 2.45
4330 4572 3.378427 CCGGTGATGGAGGAAAAGAAATC 59.622 47.826 0.00 0.00 0.00 2.17
4332 4574 2.107552 ACCGGTGATGGAGGAAAAGAAA 59.892 45.455 6.12 0.00 0.00 2.52
4333 4575 1.702957 ACCGGTGATGGAGGAAAAGAA 59.297 47.619 6.12 0.00 0.00 2.52
4334 4576 1.003118 CACCGGTGATGGAGGAAAAGA 59.997 52.381 31.31 0.00 0.00 2.52
4335 4577 1.271379 ACACCGGTGATGGAGGAAAAG 60.271 52.381 40.21 10.02 0.00 2.27
4336 4578 0.768622 ACACCGGTGATGGAGGAAAA 59.231 50.000 40.21 0.00 0.00 2.29
4338 4580 1.191535 CTACACCGGTGATGGAGGAA 58.808 55.000 40.21 13.22 0.00 3.36
4339 4581 0.040646 ACTACACCGGTGATGGAGGA 59.959 55.000 40.21 6.87 0.00 3.71
4340 4582 1.407979 GTACTACACCGGTGATGGAGG 59.592 57.143 40.21 22.20 0.00 4.30
4341 4583 2.358267 GAGTACTACACCGGTGATGGAG 59.642 54.545 40.21 28.66 0.00 3.86
4343 4585 1.407979 GGAGTACTACACCGGTGATGG 59.592 57.143 40.21 27.65 0.00 3.51
4344 4586 1.407979 GGGAGTACTACACCGGTGATG 59.592 57.143 40.21 30.10 28.89 3.07
4345 4587 1.287146 AGGGAGTACTACACCGGTGAT 59.713 52.381 40.21 25.27 28.89 3.06
4346 4588 0.700564 AGGGAGTACTACACCGGTGA 59.299 55.000 40.21 22.07 28.89 4.02
4347 4589 1.101331 GAGGGAGTACTACACCGGTG 58.899 60.000 32.83 32.83 28.89 4.94
4349 4591 1.099879 CGGAGGGAGTACTACACCGG 61.100 65.000 25.58 0.00 33.53 5.28
4350 4592 2.401967 CGGAGGGAGTACTACACCG 58.598 63.158 22.24 22.24 28.89 4.94
4364 4606 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
4365 4607 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
4366 4608 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
4367 4609 6.202954 CCTTATATGCAGAGTAAAAAGGACCG 59.797 42.308 0.00 0.00 35.34 4.79
4368 4610 7.280356 TCCTTATATGCAGAGTAAAAAGGACC 58.720 38.462 0.00 0.00 37.05 4.46
4369 4611 8.910351 ATCCTTATATGCAGAGTAAAAAGGAC 57.090 34.615 11.63 0.00 42.83 3.85
4370 4612 9.342308 CAATCCTTATATGCAGAGTAAAAAGGA 57.658 33.333 11.73 11.73 43.82 3.36
4373 4615 9.905713 AGACAATCCTTATATGCAGAGTAAAAA 57.094 29.630 0.00 0.00 0.00 1.94
4374 4616 9.330063 CAGACAATCCTTATATGCAGAGTAAAA 57.670 33.333 0.00 0.00 0.00 1.52
4376 4618 8.250143 TCAGACAATCCTTATATGCAGAGTAA 57.750 34.615 0.00 0.00 0.00 2.24
4377 4619 7.839680 TCAGACAATCCTTATATGCAGAGTA 57.160 36.000 0.00 0.00 0.00 2.59
4378 4620 6.737720 TCAGACAATCCTTATATGCAGAGT 57.262 37.500 0.00 0.00 0.00 3.24
4381 4623 6.988580 TGACTTCAGACAATCCTTATATGCAG 59.011 38.462 0.00 0.00 0.00 4.41
4382 4624 6.888105 TGACTTCAGACAATCCTTATATGCA 58.112 36.000 0.00 0.00 0.00 3.96
4385 4627 9.965902 AAGTTTGACTTCAGACAATCCTTATAT 57.034 29.630 3.03 0.00 31.77 0.86
4471 5728 7.962373 TGCGTCATGACTTTACTTTTCATATTG 59.038 33.333 22.95 3.02 0.00 1.90
4478 5735 9.128107 CATTAAATGCGTCATGACTTTACTTTT 57.872 29.630 22.95 18.52 0.00 2.27
4481 5738 7.377766 ACATTAAATGCGTCATGACTTTACT 57.622 32.000 22.95 12.19 0.00 2.24
4482 5739 7.537306 ACAACATTAAATGCGTCATGACTTTAC 59.463 33.333 22.95 10.52 0.00 2.01
4483 5740 7.589395 ACAACATTAAATGCGTCATGACTTTA 58.411 30.769 22.95 16.98 0.00 1.85
4484 5741 6.446318 ACAACATTAAATGCGTCATGACTTT 58.554 32.000 22.95 17.91 0.00 2.66
4487 5744 5.855925 TCAACAACATTAAATGCGTCATGAC 59.144 36.000 16.21 16.21 0.00 3.06
4488 5745 6.006759 TCAACAACATTAAATGCGTCATGA 57.993 33.333 0.00 0.00 0.00 3.07
4489 5746 6.874297 ATCAACAACATTAAATGCGTCATG 57.126 33.333 0.00 0.00 0.00 3.07
4490 5747 7.598118 TGAAATCAACAACATTAAATGCGTCAT 59.402 29.630 0.00 0.00 0.00 3.06
4491 5748 6.920210 TGAAATCAACAACATTAAATGCGTCA 59.080 30.769 0.00 0.00 0.00 4.35
4492 5749 7.096271 TGTGAAATCAACAACATTAAATGCGTC 60.096 33.333 0.00 0.00 0.00 5.19
4493 5750 6.699204 TGTGAAATCAACAACATTAAATGCGT 59.301 30.769 0.00 0.00 0.00 5.24
4494 5751 7.103159 TGTGAAATCAACAACATTAAATGCG 57.897 32.000 0.00 0.00 0.00 4.73
4502 5759 9.985730 ACATTTAGAATGTGAAATCAACAACAT 57.014 25.926 5.57 0.00 0.00 2.71
4503 5760 9.814899 AACATTTAGAATGTGAAATCAACAACA 57.185 25.926 7.03 0.00 31.80 3.33
4506 5763 9.814899 ACAAACATTTAGAATGTGAAATCAACA 57.185 25.926 7.03 0.00 31.80 3.33
4551 5808 9.559732 TCTGAAGTCAAATCTCATAAACTTTGA 57.440 29.630 0.00 0.00 35.78 2.69
4552 5809 9.604626 GTCTGAAGTCAAATCTCATAAACTTTG 57.395 33.333 0.00 0.00 0.00 2.77
4553 5810 9.342308 TGTCTGAAGTCAAATCTCATAAACTTT 57.658 29.630 0.00 0.00 0.00 2.66
4554 5811 8.908786 TGTCTGAAGTCAAATCTCATAAACTT 57.091 30.769 0.00 0.00 0.00 2.66
4566 5823 9.340695 CGCATATAAAATTTGTCTGAAGTCAAA 57.659 29.630 5.43 5.43 37.44 2.69
4569 5826 9.214953 CTTCGCATATAAAATTTGTCTGAAGTC 57.785 33.333 0.00 0.00 0.00 3.01
4600 6228 2.579860 TCTAGTACTCCCTCCGGTCTTT 59.420 50.000 0.00 0.00 0.00 2.52
4603 6231 1.490069 AGTCTAGTACTCCCTCCGGTC 59.510 57.143 0.00 0.00 30.33 4.79
4604 6232 1.594129 AGTCTAGTACTCCCTCCGGT 58.406 55.000 0.00 0.00 30.33 5.28
4605 6233 2.705127 AGTAGTCTAGTACTCCCTCCGG 59.295 54.545 0.00 0.00 39.80 5.14
4606 6234 4.832266 TCTAGTAGTCTAGTACTCCCTCCG 59.168 50.000 0.00 0.00 42.88 4.63
4607 6235 6.940430 ATCTAGTAGTCTAGTACTCCCTCC 57.060 45.833 0.00 0.00 42.88 4.30
4608 6236 9.093458 AGTAATCTAGTAGTCTAGTACTCCCTC 57.907 40.741 0.00 0.00 42.88 4.30
4612 6240 8.792633 TCGGAGTAATCTAGTAGTCTAGTACTC 58.207 40.741 12.91 12.91 43.26 2.59
4613 6241 8.704849 TCGGAGTAATCTAGTAGTCTAGTACT 57.295 38.462 0.00 0.00 42.88 2.73
4614 6242 7.542130 GCTCGGAGTAATCTAGTAGTCTAGTAC 59.458 44.444 6.90 0.00 42.88 2.73
4617 6245 5.870978 GGCTCGGAGTAATCTAGTAGTCTAG 59.129 48.000 6.90 0.00 43.48 2.43
4618 6246 5.543405 AGGCTCGGAGTAATCTAGTAGTCTA 59.457 44.000 6.90 0.00 0.00 2.59
4619 6247 4.348754 AGGCTCGGAGTAATCTAGTAGTCT 59.651 45.833 6.90 0.00 0.00 3.24
4620 6248 4.644498 AGGCTCGGAGTAATCTAGTAGTC 58.356 47.826 6.90 0.00 0.00 2.59
4621 6249 4.644498 GAGGCTCGGAGTAATCTAGTAGT 58.356 47.826 6.90 0.00 0.00 2.73
4623 6251 3.323115 TCGAGGCTCGGAGTAATCTAGTA 59.677 47.826 33.93 9.46 40.88 1.82
4624 6252 2.104451 TCGAGGCTCGGAGTAATCTAGT 59.896 50.000 33.93 0.00 40.88 2.57
4625 6253 2.768698 TCGAGGCTCGGAGTAATCTAG 58.231 52.381 33.93 4.21 40.88 2.43
4626 6254 2.924757 TCGAGGCTCGGAGTAATCTA 57.075 50.000 33.93 10.97 40.88 1.98
4628 6256 2.667137 CATTCGAGGCTCGGAGTAATC 58.333 52.381 33.93 2.01 40.88 1.75
4630 6258 0.102481 GCATTCGAGGCTCGGAGTAA 59.898 55.000 33.93 22.02 40.88 2.24
4631 6259 0.752009 AGCATTCGAGGCTCGGAGTA 60.752 55.000 33.93 18.39 40.88 2.59
4632 6260 2.055042 AGCATTCGAGGCTCGGAGT 61.055 57.895 33.93 18.51 40.88 3.85
4643 6477 2.898840 ATGGCGCCTGAGCATTCG 60.899 61.111 29.70 0.00 39.83 3.34
4681 6524 1.441729 GTAGGTGGCAGATGCGCTA 59.558 57.895 9.73 0.00 43.26 4.26
4683 6526 3.264897 CGTAGGTGGCAGATGCGC 61.265 66.667 0.00 0.00 43.26 6.09
4685 6528 1.982073 GCAACGTAGGTGGCAGATGC 61.982 60.000 10.07 1.18 42.99 3.91
4693 6536 1.966493 GACGGCATGCAACGTAGGTG 61.966 60.000 21.36 0.00 44.24 4.00
4694 6537 1.740296 GACGGCATGCAACGTAGGT 60.740 57.895 21.36 4.90 44.24 3.08
4695 6538 1.447838 AGACGGCATGCAACGTAGG 60.448 57.895 21.36 1.58 44.24 3.18
4758 6601 2.671070 CGGCACTGGGACTTGGAT 59.329 61.111 0.00 0.00 0.00 3.41
4792 6635 4.379243 AGGAGTGCGCTTCGGGTG 62.379 66.667 9.73 0.00 0.00 4.61
4793 6636 4.070552 GAGGAGTGCGCTTCGGGT 62.071 66.667 9.73 0.00 0.00 5.28
4796 6639 2.049156 TGTGAGGAGTGCGCTTCG 60.049 61.111 9.73 0.00 0.00 3.79
4797 6640 1.287730 CTGTGTGAGGAGTGCGCTTC 61.288 60.000 9.73 0.00 0.00 3.86
4799 6642 2.341543 CTGTGTGAGGAGTGCGCT 59.658 61.111 9.73 0.00 0.00 5.92
4813 6657 1.121407 TGGCCTGTACTGACTGCTGT 61.121 55.000 3.32 0.00 0.00 4.40
4821 6665 3.876300 GCTCGTTGGCCTGTACTG 58.124 61.111 3.32 0.00 0.00 2.74
4864 6708 1.347817 GAACAGGCTTCTCGTCGCTG 61.348 60.000 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.