Multiple sequence alignment - TraesCS3A01G271900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G271900 chr3A 100.000 7803 0 0 1 7803 500988024 500995826 0.000000e+00 14410.0
1 TraesCS3A01G271900 chr3A 89.178 499 42 5 3421 3918 38273082 38273569 5.180000e-171 612.0
2 TraesCS3A01G271900 chr3A 92.308 65 4 1 7514 7577 260068503 260068439 3.000000e-14 91.6
3 TraesCS3A01G271900 chr3A 89.041 73 6 2 7506 7577 8229056 8228985 1.080000e-13 89.8
4 TraesCS3A01G271900 chr3B 91.633 6908 377 85 715 7487 490887978 490894819 0.000000e+00 9369.0
5 TraesCS3A01G271900 chr3B 92.634 448 22 8 12 449 490887190 490887636 1.100000e-177 634.0
6 TraesCS3A01G271900 chr3B 87.375 499 47 8 3421 3918 239901099 239900616 6.840000e-155 558.0
7 TraesCS3A01G271900 chr3B 89.516 248 21 4 434 679 490887657 490887901 7.600000e-80 309.0
8 TraesCS3A01G271900 chr3B 90.411 73 6 1 7506 7577 304570238 304570166 2.320000e-15 95.3
9 TraesCS3A01G271900 chr3B 92.063 63 4 1 7516 7577 376633616 376633554 3.880000e-13 87.9
10 TraesCS3A01G271900 chr3D 95.106 3269 129 17 4329 7574 376270215 376273475 0.000000e+00 5121.0
11 TraesCS3A01G271900 chr3D 92.624 2942 118 45 727 3585 376266096 376269021 0.000000e+00 4139.0
12 TraesCS3A01G271900 chr3D 95.846 650 21 4 3588 4236 376269300 376269944 0.000000e+00 1046.0
13 TraesCS3A01G271900 chr3D 88.854 646 37 10 23 666 376265347 376265959 0.000000e+00 761.0
14 TraesCS3A01G271900 chr3D 89.372 207 19 2 3713 3918 163118472 163118268 2.790000e-64 257.0
15 TraesCS3A01G271900 chr3D 96.721 61 1 1 7743 7803 376280393 376280334 4.980000e-17 100.0
16 TraesCS3A01G271900 chr3D 95.652 46 2 0 4234 4279 376270172 376270217 3.020000e-09 75.0
17 TraesCS3A01G271900 chr5B 88.317 505 50 8 3421 3922 633310090 633310588 1.450000e-166 597.0
18 TraesCS3A01G271900 chr5B 87.897 504 47 10 3421 3922 622971068 622970577 1.460000e-161 580.0
19 TraesCS3A01G271900 chr5A 89.270 466 44 5 3421 3885 626026591 626027051 5.250000e-161 579.0
20 TraesCS3A01G271900 chr7B 88.961 462 45 5 3421 3880 709247260 709246803 4.090000e-157 566.0
21 TraesCS3A01G271900 chr7B 88.147 464 51 3 3423 3885 612313111 612313571 4.120000e-152 549.0
22 TraesCS3A01G271900 chr7A 88.441 372 28 9 3552 3918 192661594 192661233 1.200000e-117 435.0
23 TraesCS3A01G271900 chr6A 91.429 70 5 1 7506 7574 178519253 178519322 2.320000e-15 95.3
24 TraesCS3A01G271900 chr4D 91.429 70 5 1 7506 7574 351573961 351574030 2.320000e-15 95.3
25 TraesCS3A01G271900 chr4B 96.154 52 2 0 7506 7557 405376556 405376505 1.400000e-12 86.1
26 TraesCS3A01G271900 chr1B 91.803 61 5 0 7509 7569 440279890 440279950 1.400000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G271900 chr3A 500988024 500995826 7802 False 14410.000000 14410 100.0000 1 7803 1 chr3A.!!$F2 7802
1 TraesCS3A01G271900 chr3B 490887190 490894819 7629 False 3437.333333 9369 91.2610 12 7487 3 chr3B.!!$F1 7475
2 TraesCS3A01G271900 chr3D 376265347 376273475 8128 False 2228.400000 5121 93.6164 23 7574 5 chr3D.!!$F1 7551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 131 0.808755 CCAATACAACAACCGAGCCC 59.191 55.000 0.00 0.0 0.00 5.19 F
658 705 1.082104 CTTCCAAGCCAACGTTCGC 60.082 57.895 10.10 10.1 0.00 4.70 F
1068 1234 1.417890 ACTCGCTGGCCTATGCTATTT 59.582 47.619 3.32 0.0 37.74 1.40 F
1462 1667 1.455786 CACCGTAAGACTCGTTGCTTG 59.544 52.381 0.00 0.0 43.02 4.01 F
2009 2220 2.223572 CCATGAATAAAACCGCCAGAGC 60.224 50.000 0.00 0.0 0.00 4.09 F
3321 3589 2.936919 AGTTGTGGTTGATCTGCTCA 57.063 45.000 0.00 0.0 0.00 4.26 F
4695 5475 1.739035 CGTCGGTGCAATGTAGGATGT 60.739 52.381 0.00 0.0 0.00 3.06 F
6325 7173 2.432510 GTTCCTTCCATCGACTCCAGAT 59.567 50.000 0.00 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1317 1492 0.241213 TCTGCGAGAAGACCGAACTG 59.759 55.000 0.00 0.0 0.00 3.16 R
2009 2220 1.129998 CAAGTGAAAGAGAGGCATGCG 59.870 52.381 12.44 0.0 0.00 4.73 R
2065 2276 1.267806 CCTGCAAAAAGTCGCACATCT 59.732 47.619 0.00 0.0 33.75 2.90 R
3074 3331 0.825010 CATGGGGGCATAGCTTCACC 60.825 60.000 0.00 0.0 0.00 4.02 R
3520 3789 1.212195 GGCCCTAGTTAACCTCCCAAG 59.788 57.143 0.88 0.0 0.00 3.61 R
5098 5885 1.553706 CAGGGAGCCAGCAGAAAAAT 58.446 50.000 0.00 0.0 0.00 1.82 R
6397 7245 0.737219 GCATTGCTGCCTCCTTACAG 59.263 55.000 0.16 0.0 42.88 2.74 R
7626 8476 0.035056 CACATCTCCTGGGTGGTTCC 60.035 60.000 0.00 0.0 37.07 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.330080 GCAGTGACGCGTTGAATTGC 61.330 55.000 15.53 16.79 0.00 3.56
63 64 3.429085 GCTCAAACACAGCCAAATATCG 58.571 45.455 0.00 0.00 0.00 2.92
88 89 2.433436 GTTTAGCCGGACCAATCTTGT 58.567 47.619 5.05 0.00 0.00 3.16
98 103 3.191371 GGACCAATCTTGTTTACTGCCAG 59.809 47.826 0.00 0.00 0.00 4.85
115 120 2.355716 GCCAGTACAGGAGCCAATACAA 60.356 50.000 8.77 0.00 0.00 2.41
120 125 2.514803 ACAGGAGCCAATACAACAACC 58.485 47.619 0.00 0.00 0.00 3.77
126 131 0.808755 CCAATACAACAACCGAGCCC 59.191 55.000 0.00 0.00 0.00 5.19
270 275 1.415672 TTTCCACCCACGAGAAGGCT 61.416 55.000 0.00 0.00 0.00 4.58
277 282 1.364626 CCACGAGAAGGCTGATGTGC 61.365 60.000 0.00 0.00 0.00 4.57
280 285 2.806856 GAGAAGGCTGATGTGCGCG 61.807 63.158 0.00 0.00 0.00 6.86
396 407 2.358615 GCAGGGCGACACACATCA 60.359 61.111 0.00 0.00 0.00 3.07
399 410 2.358615 GGGCGACACACATCAGCA 60.359 61.111 0.00 0.00 0.00 4.41
518 565 2.943033 CGTTATGGGAGGGTGACAATTC 59.057 50.000 0.00 0.00 0.00 2.17
522 569 1.354368 TGGGAGGGTGACAATTCCTTC 59.646 52.381 0.00 0.00 0.00 3.46
529 576 3.058224 GGGTGACAATTCCTTCAGAAACG 60.058 47.826 0.00 0.00 38.21 3.60
546 593 1.538047 ACGCATGGCAACTTCTGAAT 58.462 45.000 0.00 0.00 37.61 2.57
547 594 1.200716 ACGCATGGCAACTTCTGAATG 59.799 47.619 0.00 0.00 37.61 2.67
551 598 4.309099 GCATGGCAACTTCTGAATGAAAA 58.691 39.130 0.00 0.00 33.79 2.29
553 600 5.107220 GCATGGCAACTTCTGAATGAAAAAG 60.107 40.000 0.00 0.00 33.79 2.27
560 607 8.872845 GCAACTTCTGAATGAAAAAGAAGAAAA 58.127 29.630 16.32 0.00 46.46 2.29
587 634 6.436843 TTTCTGCGATAAAGGAAGGATTTC 57.563 37.500 0.00 0.00 0.00 2.17
616 663 3.741249 TCACCACGTAAACTTGCCATAA 58.259 40.909 0.00 0.00 0.00 1.90
649 696 2.361737 GCCACCCTCTTCCAAGCC 60.362 66.667 0.00 0.00 0.00 4.35
658 705 1.082104 CTTCCAAGCCAACGTTCGC 60.082 57.895 10.10 10.10 0.00 4.70
661 708 2.718731 CAAGCCAACGTTCGCCAA 59.281 55.556 14.49 0.00 0.00 4.52
668 730 2.990514 GCCAACGTTCGCCAAATAAATT 59.009 40.909 6.63 0.00 0.00 1.82
671 733 4.261118 CCAACGTTCGCCAAATAAATTACG 59.739 41.667 0.00 0.00 0.00 3.18
677 744 3.880490 TCGCCAAATAAATTACGGCAGAT 59.120 39.130 13.51 0.00 37.98 2.90
683 750 7.591426 GCCAAATAAATTACGGCAGATAGAAAG 59.409 37.037 9.91 0.00 38.00 2.62
684 751 8.621286 CCAAATAAATTACGGCAGATAGAAAGT 58.379 33.333 0.00 0.00 0.00 2.66
688 755 4.794278 TTACGGCAGATAGAAAGTCACA 57.206 40.909 0.00 0.00 0.00 3.58
700 767 9.355916 AGATAGAAAGTCACAGTATATGCTACA 57.644 33.333 0.00 0.00 0.00 2.74
702 769 7.411486 AGAAAGTCACAGTATATGCTACAGT 57.589 36.000 0.00 0.00 0.00 3.55
704 771 7.340743 AGAAAGTCACAGTATATGCTACAGTCT 59.659 37.037 0.00 0.00 0.00 3.24
705 772 8.521170 AAAGTCACAGTATATGCTACAGTCTA 57.479 34.615 0.00 0.00 0.00 2.59
707 774 7.284074 AGTCACAGTATATGCTACAGTCTAGT 58.716 38.462 0.00 0.00 0.00 2.57
708 775 8.430431 AGTCACAGTATATGCTACAGTCTAGTA 58.570 37.037 0.00 0.00 0.00 1.82
709 776 8.497554 GTCACAGTATATGCTACAGTCTAGTAC 58.502 40.741 0.00 0.00 0.00 2.73
711 778 8.499967 CACAGTATATGCTACAGTCTAGTACAG 58.500 40.741 0.00 0.00 0.00 2.74
713 780 9.443323 CAGTATATGCTACAGTCTAGTACAGAT 57.557 37.037 0.00 0.00 35.17 2.90
786 921 3.117284 GTCATAAGTCTCCTCTCCTCCCT 60.117 52.174 0.00 0.00 0.00 4.20
881 1016 4.261405 CCGTGCTCCTGTTTGTTTATTCAA 60.261 41.667 0.00 0.00 0.00 2.69
908 1061 2.968156 AACGCCAACGCTAACGCA 60.968 55.556 0.00 0.00 45.53 5.24
1068 1234 1.417890 ACTCGCTGGCCTATGCTATTT 59.582 47.619 3.32 0.00 37.74 1.40
1074 1240 3.867984 GCTGGCCTATGCTATTTCTCCTC 60.868 52.174 3.32 0.00 37.74 3.71
1075 1241 2.639839 TGGCCTATGCTATTTCTCCTCC 59.360 50.000 3.32 0.00 37.74 4.30
1076 1242 2.026729 GGCCTATGCTATTTCTCCTCCC 60.027 54.545 0.00 0.00 37.74 4.30
1077 1243 2.026729 GCCTATGCTATTTCTCCTCCCC 60.027 54.545 0.00 0.00 33.53 4.81
1308 1483 2.492449 CTTCGAGCAGTTCCAGCGGA 62.492 60.000 0.00 0.00 37.01 5.54
1327 1505 3.430374 CGGATGGTAATTCAGTTCGGTCT 60.430 47.826 0.00 0.00 0.00 3.85
1369 1547 8.308931 CCATGTTACTACTACTTTGGTGACTTA 58.691 37.037 0.00 0.00 0.00 2.24
1391 1596 9.474313 ACTTATACAGTTTCTCTCTGATTCTCT 57.526 33.333 0.00 0.00 36.81 3.10
1462 1667 1.455786 CACCGTAAGACTCGTTGCTTG 59.544 52.381 0.00 0.00 43.02 4.01
1470 1675 3.643763 AGACTCGTTGCTTGTACTTCAG 58.356 45.455 0.00 0.00 0.00 3.02
1598 1803 5.235831 GGTACAATTTAATCGAGGCTGTACC 59.764 44.000 18.28 18.28 46.12 3.34
1647 1852 7.831690 TCTGATTCGATCTTAGCTCATATAGGT 59.168 37.037 0.00 0.00 39.81 3.08
1793 2004 7.436080 GTGTAGCTTGTGCCGTAAGTAATTATA 59.564 37.037 0.00 0.00 40.80 0.98
1959 2170 9.349713 TGTTAATTTCTGGACTCAACTGTTAAT 57.650 29.630 0.00 0.00 0.00 1.40
2009 2220 2.223572 CCATGAATAAAACCGCCAGAGC 60.224 50.000 0.00 0.00 0.00 4.09
2042 2253 5.904941 TCTTTCACTTGTCATGCAAACATT 58.095 33.333 6.16 0.00 36.53 2.71
2065 2276 8.729756 CATTTATCTTGTGAACTGTGATAACCA 58.270 33.333 0.00 0.00 31.81 3.67
2078 2289 3.684788 GTGATAACCAGATGTGCGACTTT 59.315 43.478 0.00 0.00 0.00 2.66
2202 2415 6.186957 TCTTATGTTTGTACCATCTTGGCAT 58.813 36.000 0.00 0.00 42.67 4.40
2207 2420 5.065859 TGTTTGTACCATCTTGGCATTATCG 59.934 40.000 0.00 0.00 42.67 2.92
2223 2436 6.422223 GCATTATCGTGTATTTCAGACCTTG 58.578 40.000 0.00 0.00 0.00 3.61
2407 2620 6.058183 GCTCCCTGAAATGATATACACAAGT 58.942 40.000 0.00 0.00 0.00 3.16
2440 2653 7.556733 TCTTTTTCCTACTTTGTCGCTTAAA 57.443 32.000 0.00 0.00 0.00 1.52
2497 2710 4.924305 ACATGCATGTCTCAAACAGTTT 57.076 36.364 26.61 0.00 42.37 2.66
2498 2711 4.613944 ACATGCATGTCTCAAACAGTTTG 58.386 39.130 26.61 18.62 42.37 2.93
2499 2712 4.098349 ACATGCATGTCTCAAACAGTTTGT 59.902 37.500 26.61 0.00 42.37 2.83
2500 2713 4.717233 TGCATGTCTCAAACAGTTTGTT 57.283 36.364 22.70 0.00 43.41 2.83
2501 2714 4.422840 TGCATGTCTCAAACAGTTTGTTG 58.577 39.130 22.70 16.98 40.14 3.33
2502 2715 4.157472 TGCATGTCTCAAACAGTTTGTTGA 59.843 37.500 22.70 18.62 40.14 3.18
2503 2716 5.101628 GCATGTCTCAAACAGTTTGTTGAA 58.898 37.500 22.70 10.27 40.14 2.69
2504 2717 5.750067 GCATGTCTCAAACAGTTTGTTGAAT 59.250 36.000 22.70 11.79 40.14 2.57
2505 2718 6.074676 GCATGTCTCAAACAGTTTGTTGAATC 60.075 38.462 22.70 12.75 40.14 2.52
2506 2719 6.507958 TGTCTCAAACAGTTTGTTGAATCA 57.492 33.333 22.70 14.56 40.14 2.57
2507 2720 6.918626 TGTCTCAAACAGTTTGTTGAATCAA 58.081 32.000 22.70 0.00 40.14 2.57
2508 2721 7.374272 TGTCTCAAACAGTTTGTTGAATCAAA 58.626 30.769 22.70 2.62 40.14 2.69
2509 2722 8.034215 TGTCTCAAACAGTTTGTTGAATCAAAT 58.966 29.630 22.70 0.00 40.14 2.32
2510 2723 8.872845 GTCTCAAACAGTTTGTTGAATCAAATT 58.127 29.630 22.70 0.00 40.14 1.82
2658 2910 4.196971 ACTAGAAACTTCCAACGTGCTTT 58.803 39.130 0.00 0.00 0.00 3.51
2717 2969 8.240682 ACTGAAAAATAATAACGCATGTGCTAA 58.759 29.630 6.08 0.00 39.32 3.09
2787 3040 5.782845 ACCTGGTTGCTTGGGAAAATAATTA 59.217 36.000 0.00 0.00 0.00 1.40
3120 3387 6.743575 ACAATATTGTTAGCACTTCCTCAC 57.256 37.500 15.47 0.00 38.47 3.51
3140 3407 3.687698 CACGGGGTTAAGTTGTGGAATAG 59.312 47.826 0.00 0.00 0.00 1.73
3321 3589 2.936919 AGTTGTGGTTGATCTGCTCA 57.063 45.000 0.00 0.00 0.00 4.26
3361 3629 8.539674 CATTGCTATTGTGTCAATGAATGATTG 58.460 33.333 8.08 0.00 45.87 2.67
3482 3751 3.201930 TGCTGAGTAGGGATTAATTGGCA 59.798 43.478 0.00 0.00 0.00 4.92
3511 3780 8.402472 TCGGCCATTTAACTTAATTTATCAGTG 58.598 33.333 2.24 0.00 0.00 3.66
3662 4211 2.786777 TGTTCTGATGATGTTGCAGCT 58.213 42.857 1.17 0.00 0.00 4.24
3710 4259 6.498651 CACATAGATAAGTAGGGAGGGAACAT 59.501 42.308 0.00 0.00 0.00 2.71
4019 4568 3.086282 TGCTGACCGTCATCTAGTACAA 58.914 45.455 0.62 0.00 0.00 2.41
4151 4700 2.258755 GCAAATGGCGTGGTATGTTTC 58.741 47.619 0.00 0.00 0.00 2.78
4271 5050 8.175069 GTGACCATTTAATATATGTGGTATGCG 58.825 37.037 10.56 0.00 42.87 4.73
4273 5052 8.263940 ACCATTTAATATATGTGGTATGCGTC 57.736 34.615 9.40 0.00 41.15 5.19
4287 5066 5.361571 TGGTATGCGTCTTTATGAGTTCCTA 59.638 40.000 0.00 0.00 0.00 2.94
4292 5071 4.446051 GCGTCTTTATGAGTTCCTATGAGC 59.554 45.833 0.00 0.00 0.00 4.26
4372 5152 3.050089 TGGGAACTCCAAACCTGTTCTA 58.950 45.455 0.00 0.00 43.84 2.10
4524 5304 2.035321 ACCAAATTGCGGTTACCAAGTG 59.965 45.455 1.13 0.00 30.53 3.16
4673 5453 6.244275 CGCTCTTTCTTATTAGCTTTGTGAC 58.756 40.000 0.00 0.00 32.73 3.67
4695 5475 1.739035 CGTCGGTGCAATGTAGGATGT 60.739 52.381 0.00 0.00 0.00 3.06
4742 5522 9.125026 CAGTGCTCCTAATTACCATATTTTCTT 57.875 33.333 0.00 0.00 0.00 2.52
4972 5757 4.621747 GCAGTACTTGTAGCTCTTCCATGT 60.622 45.833 0.00 0.00 0.00 3.21
5049 5835 4.016444 GCAATCCATCTTCTGTTACCCAA 58.984 43.478 0.00 0.00 0.00 4.12
5050 5836 4.142381 GCAATCCATCTTCTGTTACCCAAC 60.142 45.833 0.00 0.00 35.06 3.77
5146 5936 4.343814 ACCAAACCGATCTTTGTGGAATTT 59.656 37.500 6.64 0.00 30.33 1.82
5245 6056 8.932945 TGCAATTGAATACTTCTGTCTACTAG 57.067 34.615 10.34 0.00 0.00 2.57
5571 6407 3.648339 AAAATGCGTCAATGCTCACTT 57.352 38.095 0.00 0.00 35.36 3.16
5620 6456 6.240894 AGAGTGAACATTGCTTTATGGAAGA 58.759 36.000 0.00 0.00 37.57 2.87
5652 6488 4.021016 TGGAGAACAAGCCTTTAGACTCTC 60.021 45.833 0.00 0.00 0.00 3.20
5780 6616 5.716228 TCAATAATGGGCTGTTTTGACTCAT 59.284 36.000 0.00 0.00 0.00 2.90
5822 6658 3.284617 CATTTCACTGCAGATGGATGGA 58.715 45.455 23.35 0.00 0.00 3.41
5885 6721 6.072119 CCACAAATTTACCTTGGGAACTAGAC 60.072 42.308 0.00 0.00 34.95 2.59
5951 6790 8.680903 CCTGAAAATAGTAATTCTGAGTGCAAT 58.319 33.333 0.00 0.00 0.00 3.56
6005 6844 3.091545 CTGTTATGGATGCCACCAGTTT 58.908 45.455 5.29 0.00 43.49 2.66
6226 7074 7.857885 CACTTGATTTCTGTACCTGAAGAAAAC 59.142 37.037 9.41 7.96 43.57 2.43
6325 7173 2.432510 GTTCCTTCCATCGACTCCAGAT 59.567 50.000 0.00 0.00 0.00 2.90
6397 7245 2.678324 GGCTCTGATATACGCCTTGTC 58.322 52.381 0.00 0.00 39.42 3.18
6518 7366 6.483307 TCACAAGTGATTGTCTACCTTTTCTG 59.517 38.462 0.00 0.00 34.14 3.02
6819 7667 3.311966 GCTAAAGGTGAGCAGCAAAAAG 58.688 45.455 0.00 0.00 39.84 2.27
6841 7689 1.952133 CGACGCTTTTGACCGACCA 60.952 57.895 0.00 0.00 0.00 4.02
6846 7694 0.310854 GCTTTTGACCGACCACCTTG 59.689 55.000 0.00 0.00 0.00 3.61
6861 7709 3.691609 CCACCTTGGATTTCTCTAAGCAC 59.308 47.826 0.00 0.00 40.96 4.40
6902 7751 4.458397 CAGGAGCATGTTGATATGACCTT 58.542 43.478 0.00 0.00 35.66 3.50
7053 7902 5.205056 TCACAAACAATAAGTCCTTTGGGT 58.795 37.500 0.00 0.00 30.48 4.51
7067 7916 4.783227 TCCTTTGGGTATTCAAGCTCTACT 59.217 41.667 0.00 0.00 0.00 2.57
7151 8000 0.884514 GCTTGAAGCTTTGGTCCTCC 59.115 55.000 10.44 0.00 38.45 4.30
7169 8019 3.490526 CCTCCGTTTGTTTTCAAGCAATG 59.509 43.478 0.00 0.00 40.26 2.82
7183 8033 1.089920 GCAATGTGCTCACTCCGATT 58.910 50.000 1.47 0.00 40.96 3.34
7209 8059 0.169009 GCTTCTCGTTTGGACATGGC 59.831 55.000 0.00 0.00 0.00 4.40
7459 8309 9.162793 CATGACGAGCTTTAATGATTTGATAAC 57.837 33.333 0.00 0.00 0.00 1.89
7512 8362 4.047883 AGAGCTAGGGGGATTACAACAAT 58.952 43.478 0.00 0.00 0.00 2.71
7523 8373 6.367695 GGGGATTACAACAATAACAACAAAGC 59.632 38.462 0.00 0.00 0.00 3.51
7528 8378 8.779354 TTACAACAATAACAACAAAGCCTTTT 57.221 26.923 0.00 0.00 0.00 2.27
7540 8390 4.198530 CAAAGCCTTTTGTCCCAAACAAT 58.801 39.130 0.00 0.00 46.94 2.71
7557 8407 3.460825 ACAATTTGGGGTAGGCTAGAGA 58.539 45.455 0.00 0.00 0.00 3.10
7560 8410 2.103153 TTGGGGTAGGCTAGAGATGG 57.897 55.000 0.00 0.00 0.00 3.51
7564 8414 2.426561 GGGGTAGGCTAGAGATGGAACT 60.427 54.545 0.00 0.00 0.00 3.01
7569 8419 5.417580 GGTAGGCTAGAGATGGAACTCATAG 59.582 48.000 0.00 0.00 39.14 2.23
7570 8420 5.332106 AGGCTAGAGATGGAACTCATAGA 57.668 43.478 0.00 0.00 39.14 1.98
7571 8421 5.902760 AGGCTAGAGATGGAACTCATAGAT 58.097 41.667 0.00 0.00 39.14 1.98
7572 8422 5.951747 AGGCTAGAGATGGAACTCATAGATC 59.048 44.000 0.00 0.00 39.14 2.75
7573 8423 5.951747 GGCTAGAGATGGAACTCATAGATCT 59.048 44.000 0.00 0.00 39.14 2.75
7574 8424 6.127647 GGCTAGAGATGGAACTCATAGATCTG 60.128 46.154 5.18 0.00 39.14 2.90
7575 8425 6.127647 GCTAGAGATGGAACTCATAGATCTGG 60.128 46.154 5.18 0.00 39.14 3.86
7576 8426 4.527816 AGAGATGGAACTCATAGATCTGGC 59.472 45.833 5.18 0.00 39.14 4.85
7577 8427 3.582208 AGATGGAACTCATAGATCTGGCC 59.418 47.826 5.18 0.00 35.97 5.36
7578 8428 1.688735 TGGAACTCATAGATCTGGCCG 59.311 52.381 5.18 0.00 0.00 6.13
7579 8429 1.606737 GGAACTCATAGATCTGGCCGC 60.607 57.143 5.18 0.00 0.00 6.53
7580 8430 1.069204 GAACTCATAGATCTGGCCGCA 59.931 52.381 5.18 0.00 0.00 5.69
7581 8431 1.346062 ACTCATAGATCTGGCCGCAT 58.654 50.000 5.18 0.00 0.00 4.73
7582 8432 1.274728 ACTCATAGATCTGGCCGCATC 59.725 52.381 5.18 1.33 0.00 3.91
7583 8433 0.610174 TCATAGATCTGGCCGCATCC 59.390 55.000 5.18 0.00 0.00 3.51
7584 8434 0.322648 CATAGATCTGGCCGCATCCA 59.677 55.000 5.18 0.00 34.42 3.41
7585 8435 0.322975 ATAGATCTGGCCGCATCCAC 59.677 55.000 5.18 0.00 31.74 4.02
7586 8436 1.758440 TAGATCTGGCCGCATCCACC 61.758 60.000 5.18 0.00 31.74 4.61
7587 8437 4.552365 ATCTGGCCGCATCCACCG 62.552 66.667 0.00 0.00 31.74 4.94
7589 8439 4.155733 CTGGCCGCATCCACCGTA 62.156 66.667 0.00 0.00 31.74 4.02
7590 8440 3.460672 CTGGCCGCATCCACCGTAT 62.461 63.158 0.00 0.00 31.74 3.06
7591 8441 2.972505 GGCCGCATCCACCGTATG 60.973 66.667 0.00 0.00 0.00 2.39
7592 8442 3.649986 GCCGCATCCACCGTATGC 61.650 66.667 0.00 0.00 45.03 3.14
7597 8447 3.778619 CATCCACCGTATGCAGGAA 57.221 52.632 0.00 0.00 33.17 3.36
7598 8448 1.299541 CATCCACCGTATGCAGGAAC 58.700 55.000 0.00 0.00 33.17 3.62
7599 8449 0.908910 ATCCACCGTATGCAGGAACA 59.091 50.000 0.00 0.00 33.17 3.18
7600 8450 0.036765 TCCACCGTATGCAGGAACAC 60.037 55.000 0.00 0.00 0.00 3.32
7601 8451 1.024579 CCACCGTATGCAGGAACACC 61.025 60.000 0.00 0.00 0.00 4.16
7602 8452 0.321210 CACCGTATGCAGGAACACCA 60.321 55.000 0.00 0.00 0.00 4.17
7603 8453 0.321298 ACCGTATGCAGGAACACCAC 60.321 55.000 0.00 0.00 0.00 4.16
7604 8454 1.024579 CCGTATGCAGGAACACCACC 61.025 60.000 0.00 0.00 0.00 4.61
7605 8455 0.036388 CGTATGCAGGAACACCACCT 60.036 55.000 0.00 0.00 38.40 4.00
7606 8456 1.739067 GTATGCAGGAACACCACCTC 58.261 55.000 0.00 0.00 35.35 3.85
7607 8457 1.279271 GTATGCAGGAACACCACCTCT 59.721 52.381 0.00 0.00 35.35 3.69
7608 8458 0.773644 ATGCAGGAACACCACCTCTT 59.226 50.000 0.00 0.00 35.35 2.85
7609 8459 0.550914 TGCAGGAACACCACCTCTTT 59.449 50.000 0.00 0.00 35.35 2.52
7610 8460 0.954452 GCAGGAACACCACCTCTTTG 59.046 55.000 0.00 0.00 35.35 2.77
7611 8461 0.954452 CAGGAACACCACCTCTTTGC 59.046 55.000 0.00 0.00 35.35 3.68
7612 8462 0.550914 AGGAACACCACCTCTTTGCA 59.449 50.000 0.00 0.00 31.43 4.08
7613 8463 1.064017 AGGAACACCACCTCTTTGCAA 60.064 47.619 0.00 0.00 31.43 4.08
7614 8464 1.067060 GGAACACCACCTCTTTGCAAC 59.933 52.381 0.00 0.00 0.00 4.17
7615 8465 1.748493 GAACACCACCTCTTTGCAACA 59.252 47.619 0.00 0.00 0.00 3.33
7616 8466 1.102978 ACACCACCTCTTTGCAACAC 58.897 50.000 0.00 0.00 0.00 3.32
7617 8467 0.385390 CACCACCTCTTTGCAACACC 59.615 55.000 0.00 0.00 0.00 4.16
7618 8468 0.755327 ACCACCTCTTTGCAACACCC 60.755 55.000 0.00 0.00 0.00 4.61
7619 8469 1.463553 CCACCTCTTTGCAACACCCC 61.464 60.000 0.00 0.00 0.00 4.95
7620 8470 0.468029 CACCTCTTTGCAACACCCCT 60.468 55.000 0.00 0.00 0.00 4.79
7621 8471 0.468029 ACCTCTTTGCAACACCCCTG 60.468 55.000 0.00 0.00 0.00 4.45
7622 8472 1.181098 CCTCTTTGCAACACCCCTGG 61.181 60.000 0.00 0.00 0.00 4.45
7623 8473 0.178992 CTCTTTGCAACACCCCTGGA 60.179 55.000 0.00 0.00 0.00 3.86
7624 8474 0.260230 TCTTTGCAACACCCCTGGAA 59.740 50.000 0.00 0.00 0.00 3.53
7625 8475 0.675633 CTTTGCAACACCCCTGGAAG 59.324 55.000 0.00 0.00 0.00 3.46
7644 8494 2.387952 GGAACCACCCAGGAGATGT 58.612 57.895 0.00 0.00 41.22 3.06
7645 8495 0.035056 GGAACCACCCAGGAGATGTG 60.035 60.000 0.00 0.00 41.22 3.21
7646 8496 0.678048 GAACCACCCAGGAGATGTGC 60.678 60.000 0.00 0.00 41.22 4.57
7647 8497 2.124983 CCACCCAGGAGATGTGCG 60.125 66.667 0.00 0.00 41.22 5.34
7648 8498 2.659063 CCACCCAGGAGATGTGCGA 61.659 63.158 0.00 0.00 41.22 5.10
7649 8499 1.448540 CACCCAGGAGATGTGCGAC 60.449 63.158 0.00 0.00 0.00 5.19
7650 8500 1.913262 ACCCAGGAGATGTGCGACA 60.913 57.895 0.00 0.00 0.00 4.35
7651 8501 1.296392 CCCAGGAGATGTGCGACAA 59.704 57.895 0.00 0.00 0.00 3.18
7652 8502 0.321564 CCCAGGAGATGTGCGACAAA 60.322 55.000 0.00 0.00 0.00 2.83
7653 8503 1.081892 CCAGGAGATGTGCGACAAAG 58.918 55.000 0.00 0.00 0.00 2.77
7654 8504 1.081892 CAGGAGATGTGCGACAAAGG 58.918 55.000 0.00 0.00 0.00 3.11
7655 8505 0.976641 AGGAGATGTGCGACAAAGGA 59.023 50.000 0.00 0.00 0.00 3.36
7656 8506 1.066573 AGGAGATGTGCGACAAAGGAG 60.067 52.381 0.00 0.00 0.00 3.69
7657 8507 0.723981 GAGATGTGCGACAAAGGAGC 59.276 55.000 0.00 0.00 0.00 4.70
7658 8508 1.016130 AGATGTGCGACAAAGGAGCG 61.016 55.000 0.00 0.00 0.00 5.03
7663 8513 2.668212 CGACAAAGGAGCGCCCAA 60.668 61.111 15.92 0.00 37.41 4.12
7664 8514 2.258013 CGACAAAGGAGCGCCCAAA 61.258 57.895 15.92 0.00 37.41 3.28
7665 8515 1.285950 GACAAAGGAGCGCCCAAAC 59.714 57.895 15.92 0.00 37.41 2.93
7666 8516 2.142357 GACAAAGGAGCGCCCAAACC 62.142 60.000 15.92 7.26 37.41 3.27
7667 8517 2.600470 AAAGGAGCGCCCAAACCC 60.600 61.111 15.92 3.52 37.41 4.11
7668 8518 3.444818 AAAGGAGCGCCCAAACCCA 62.445 57.895 15.92 0.00 37.41 4.51
7669 8519 2.937959 AAAGGAGCGCCCAAACCCAA 62.938 55.000 15.92 0.00 37.41 4.12
7670 8520 3.373565 GGAGCGCCCAAACCCAAG 61.374 66.667 2.29 0.00 34.14 3.61
7671 8521 3.373565 GAGCGCCCAAACCCAAGG 61.374 66.667 2.29 0.00 0.00 3.61
7672 8522 3.860930 GAGCGCCCAAACCCAAGGA 62.861 63.158 2.29 0.00 0.00 3.36
7673 8523 2.679996 GCGCCCAAACCCAAGGAT 60.680 61.111 0.00 0.00 0.00 3.24
7674 8524 3.005540 GCGCCCAAACCCAAGGATG 62.006 63.158 0.00 0.00 0.00 3.51
7675 8525 1.606313 CGCCCAAACCCAAGGATGT 60.606 57.895 0.00 0.00 0.00 3.06
7676 8526 1.595093 CGCCCAAACCCAAGGATGTC 61.595 60.000 0.00 0.00 0.00 3.06
7677 8527 1.257750 GCCCAAACCCAAGGATGTCC 61.258 60.000 0.00 0.00 0.00 4.02
7678 8528 0.965363 CCCAAACCCAAGGATGTCCG 60.965 60.000 0.00 0.00 42.08 4.79
7679 8529 0.965363 CCAAACCCAAGGATGTCCGG 60.965 60.000 0.00 0.00 42.08 5.14
7680 8530 0.037590 CAAACCCAAGGATGTCCGGA 59.962 55.000 0.00 0.00 42.08 5.14
7681 8531 0.774908 AAACCCAAGGATGTCCGGAA 59.225 50.000 5.23 0.00 42.08 4.30
7682 8532 0.328258 AACCCAAGGATGTCCGGAAG 59.672 55.000 5.23 0.00 42.08 3.46
7695 8545 3.768633 CGGAAGGAGTCATGGAAGG 57.231 57.895 0.00 0.00 0.00 3.46
7696 8546 0.179000 CGGAAGGAGTCATGGAAGGG 59.821 60.000 0.00 0.00 0.00 3.95
7697 8547 0.548510 GGAAGGAGTCATGGAAGGGG 59.451 60.000 0.00 0.00 0.00 4.79
7698 8548 1.584724 GAAGGAGTCATGGAAGGGGA 58.415 55.000 0.00 0.00 0.00 4.81
7699 8549 2.131023 GAAGGAGTCATGGAAGGGGAT 58.869 52.381 0.00 0.00 0.00 3.85
7700 8550 1.813102 AGGAGTCATGGAAGGGGATC 58.187 55.000 0.00 0.00 0.00 3.36
7701 8551 0.394565 GGAGTCATGGAAGGGGATCG 59.605 60.000 0.00 0.00 0.00 3.69
7702 8552 0.250081 GAGTCATGGAAGGGGATCGC 60.250 60.000 0.06 0.06 0.00 4.58
7703 8553 1.227973 GTCATGGAAGGGGATCGCC 60.228 63.158 20.86 20.86 0.00 5.54
7704 8554 1.692395 TCATGGAAGGGGATCGCCA 60.692 57.895 28.74 10.17 35.15 5.69
7705 8555 1.526917 CATGGAAGGGGATCGCCAC 60.527 63.158 28.74 20.90 38.12 5.01
7706 8556 2.757124 ATGGAAGGGGATCGCCACC 61.757 63.158 28.74 27.48 38.89 4.61
7707 8557 3.407967 GGAAGGGGATCGCCACCA 61.408 66.667 28.74 0.00 38.89 4.17
7708 8558 2.190578 GAAGGGGATCGCCACCAG 59.809 66.667 28.74 0.00 38.89 4.00
7709 8559 4.115199 AAGGGGATCGCCACCAGC 62.115 66.667 28.74 2.55 38.89 4.85
7718 8568 3.490890 GCCACCAGCGTCATCTTC 58.509 61.111 0.00 0.00 0.00 2.87
7719 8569 2.109126 GCCACCAGCGTCATCTTCC 61.109 63.158 0.00 0.00 0.00 3.46
7720 8570 1.599047 CCACCAGCGTCATCTTCCT 59.401 57.895 0.00 0.00 0.00 3.36
7721 8571 0.460987 CCACCAGCGTCATCTTCCTC 60.461 60.000 0.00 0.00 0.00 3.71
7722 8572 0.803768 CACCAGCGTCATCTTCCTCG 60.804 60.000 0.00 0.00 0.00 4.63
7723 8573 1.251527 ACCAGCGTCATCTTCCTCGT 61.252 55.000 0.00 0.00 0.00 4.18
7724 8574 0.803768 CCAGCGTCATCTTCCTCGTG 60.804 60.000 0.00 0.00 0.00 4.35
7725 8575 0.109086 CAGCGTCATCTTCCTCGTGT 60.109 55.000 0.00 0.00 0.00 4.49
7726 8576 0.603569 AGCGTCATCTTCCTCGTGTT 59.396 50.000 0.00 0.00 0.00 3.32
7727 8577 1.000955 AGCGTCATCTTCCTCGTGTTT 59.999 47.619 0.00 0.00 0.00 2.83
7728 8578 1.798813 GCGTCATCTTCCTCGTGTTTT 59.201 47.619 0.00 0.00 0.00 2.43
7729 8579 2.223377 GCGTCATCTTCCTCGTGTTTTT 59.777 45.455 0.00 0.00 0.00 1.94
7753 8603 3.699779 TTCGAGACATCATCTTCCTCG 57.300 47.619 0.00 0.00 45.50 4.63
7754 8604 2.644676 TCGAGACATCATCTTCCTCGT 58.355 47.619 0.00 0.00 44.73 4.18
7755 8605 2.356069 TCGAGACATCATCTTCCTCGTG 59.644 50.000 0.00 0.00 44.73 4.35
7756 8606 2.098280 CGAGACATCATCTTCCTCGTGT 59.902 50.000 0.00 0.00 41.02 4.49
7757 8607 3.428180 CGAGACATCATCTTCCTCGTGTT 60.428 47.826 0.00 0.00 41.02 3.32
7758 8608 4.201920 CGAGACATCATCTTCCTCGTGTTA 60.202 45.833 0.00 0.00 41.02 2.41
7759 8609 5.506483 CGAGACATCATCTTCCTCGTGTTAT 60.506 44.000 0.00 0.00 41.02 1.89
7760 8610 6.227298 AGACATCATCTTCCTCGTGTTATT 57.773 37.500 0.00 0.00 31.62 1.40
7761 8611 6.045318 AGACATCATCTTCCTCGTGTTATTG 58.955 40.000 0.00 0.00 31.62 1.90
7762 8612 5.977635 ACATCATCTTCCTCGTGTTATTGA 58.022 37.500 0.00 0.00 0.00 2.57
7763 8613 6.586344 ACATCATCTTCCTCGTGTTATTGAT 58.414 36.000 0.00 0.00 0.00 2.57
7764 8614 6.481313 ACATCATCTTCCTCGTGTTATTGATG 59.519 38.462 0.00 0.00 42.11 3.07
7765 8615 4.811024 TCATCTTCCTCGTGTTATTGATGC 59.189 41.667 0.00 0.00 32.62 3.91
7766 8616 3.186909 TCTTCCTCGTGTTATTGATGCG 58.813 45.455 0.00 0.00 0.00 4.73
7767 8617 1.934589 TCCTCGTGTTATTGATGCGG 58.065 50.000 0.00 0.00 0.00 5.69
7768 8618 0.304705 CCTCGTGTTATTGATGCGGC 59.695 55.000 0.00 0.00 0.00 6.53
7769 8619 1.290203 CTCGTGTTATTGATGCGGCT 58.710 50.000 0.00 0.00 0.00 5.52
7770 8620 2.469826 CTCGTGTTATTGATGCGGCTA 58.530 47.619 0.00 0.00 0.00 3.93
7771 8621 3.059884 CTCGTGTTATTGATGCGGCTAT 58.940 45.455 0.00 0.00 0.00 2.97
7772 8622 2.799978 TCGTGTTATTGATGCGGCTATG 59.200 45.455 0.00 0.00 0.00 2.23
7773 8623 2.662791 CGTGTTATTGATGCGGCTATGC 60.663 50.000 0.00 0.00 0.00 3.14
7774 8624 1.879380 TGTTATTGATGCGGCTATGCC 59.121 47.619 0.00 0.00 46.75 4.40
7786 8636 1.900237 GCTATGCCACGAAGCTTTTG 58.100 50.000 0.00 0.79 33.40 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.724623 CGCGTCACTGCTAGCTAAAAA 59.275 47.619 17.23 0.00 0.00 1.94
2 3 1.336517 ACGCGTCACTGCTAGCTAAAA 60.337 47.619 17.23 0.00 0.00 1.52
3 4 0.242825 ACGCGTCACTGCTAGCTAAA 59.757 50.000 17.23 0.00 0.00 1.85
4 5 0.242825 AACGCGTCACTGCTAGCTAA 59.757 50.000 14.44 0.00 0.00 3.09
5 6 0.456142 CAACGCGTCACTGCTAGCTA 60.456 55.000 14.44 1.31 0.00 3.32
6 7 1.734477 CAACGCGTCACTGCTAGCT 60.734 57.895 14.44 0.00 0.00 3.32
7 8 1.282248 TTCAACGCGTCACTGCTAGC 61.282 55.000 14.44 8.10 0.00 3.42
8 9 1.350193 ATTCAACGCGTCACTGCTAG 58.650 50.000 14.44 0.00 0.00 3.42
9 10 1.459209 CAATTCAACGCGTCACTGCTA 59.541 47.619 14.44 0.00 0.00 3.49
10 11 0.235665 CAATTCAACGCGTCACTGCT 59.764 50.000 14.44 0.00 0.00 4.24
63 64 0.034863 TTGGTCCGGCTAAACCATCC 60.035 55.000 13.13 0.00 44.72 3.51
88 89 1.278127 GGCTCCTGTACTGGCAGTAAA 59.722 52.381 27.75 22.01 31.62 2.01
98 103 3.439129 GGTTGTTGTATTGGCTCCTGTAC 59.561 47.826 0.00 0.00 0.00 2.90
126 131 3.117171 GCCACACTCGAGCAGCAG 61.117 66.667 13.61 1.84 0.00 4.24
211 216 1.665169 CAAGCAGGTTTTGTTGCAACC 59.335 47.619 26.14 11.85 43.73 3.77
289 294 2.047844 CCGTCTGTGACAGGGCAG 60.048 66.667 13.33 2.01 32.09 4.85
388 393 0.870393 GTCCTGTGTGCTGATGTGTG 59.130 55.000 0.00 0.00 0.00 3.82
396 407 0.392193 GCATGCTAGTCCTGTGTGCT 60.392 55.000 11.37 0.00 0.00 4.40
399 410 0.979665 ACTGCATGCTAGTCCTGTGT 59.020 50.000 20.33 1.26 0.00 3.72
436 447 4.028131 TCGCAAGATAAGAGGGTCCTTTA 58.972 43.478 0.00 0.00 45.01 1.85
518 565 0.597568 TTGCCATGCGTTTCTGAAGG 59.402 50.000 0.00 0.00 0.00 3.46
522 569 1.267806 AGAAGTTGCCATGCGTTTCTG 59.732 47.619 0.00 0.00 0.00 3.02
529 576 3.581024 TTCATTCAGAAGTTGCCATGC 57.419 42.857 0.00 0.00 0.00 4.06
556 603 7.433425 CCTTCCTTTATCGCAGAAATCATTTTC 59.567 37.037 0.00 0.00 43.58 2.29
560 607 5.684704 TCCTTCCTTTATCGCAGAAATCAT 58.315 37.500 0.00 0.00 43.58 2.45
561 608 5.097742 TCCTTCCTTTATCGCAGAAATCA 57.902 39.130 0.00 0.00 43.58 2.57
562 609 6.625873 AATCCTTCCTTTATCGCAGAAATC 57.374 37.500 0.00 0.00 43.58 2.17
563 610 6.039829 GGAAATCCTTCCTTTATCGCAGAAAT 59.960 38.462 0.00 0.00 46.80 2.17
566 613 4.451900 GGAAATCCTTCCTTTATCGCAGA 58.548 43.478 0.00 0.00 46.80 4.26
587 634 3.408634 AGTTTACGTGGTGAAAGATGGG 58.591 45.455 0.00 0.00 0.00 4.00
595 642 2.264005 ATGGCAAGTTTACGTGGTGA 57.736 45.000 0.00 0.00 0.00 4.02
631 678 2.436109 GCTTGGAAGAGGGTGGCA 59.564 61.111 0.00 0.00 0.00 4.92
649 696 4.261118 CCGTAATTTATTTGGCGAACGTTG 59.739 41.667 5.00 0.00 0.00 4.10
658 705 8.621286 ACTTTCTATCTGCCGTAATTTATTTGG 58.379 33.333 0.00 0.00 0.00 3.28
661 708 8.827677 GTGACTTTCTATCTGCCGTAATTTATT 58.172 33.333 0.00 0.00 0.00 1.40
668 730 3.762288 ACTGTGACTTTCTATCTGCCGTA 59.238 43.478 0.00 0.00 0.00 4.02
671 733 6.367422 GCATATACTGTGACTTTCTATCTGCC 59.633 42.308 0.00 0.00 0.00 4.85
677 744 8.521170 ACTGTAGCATATACTGTGACTTTCTA 57.479 34.615 0.00 0.00 0.00 2.10
683 750 7.499321 ACTAGACTGTAGCATATACTGTGAC 57.501 40.000 0.00 0.00 31.30 3.67
684 751 8.208903 TGTACTAGACTGTAGCATATACTGTGA 58.791 37.037 0.00 0.00 31.30 3.58
700 767 3.140519 CCCCAGGGTATCTGTACTAGACT 59.859 52.174 4.22 0.00 41.83 3.24
702 769 2.449730 CCCCCAGGGTATCTGTACTAGA 59.550 54.545 4.22 0.00 41.83 2.43
704 771 1.132945 GCCCCCAGGGTATCTGTACTA 60.133 57.143 4.22 0.00 46.51 1.82
705 772 0.400093 GCCCCCAGGGTATCTGTACT 60.400 60.000 4.22 0.00 46.51 2.73
707 774 0.693092 GTGCCCCCAGGGTATCTGTA 60.693 60.000 4.22 0.00 46.51 2.74
708 775 2.001269 GTGCCCCCAGGGTATCTGT 61.001 63.158 4.22 0.00 46.51 3.41
709 776 2.757124 GGTGCCCCCAGGGTATCTG 61.757 68.421 4.22 0.00 46.51 2.90
733 866 4.373116 GTCCCGCGGCTTGACTGA 62.373 66.667 22.85 6.79 0.00 3.41
746 881 2.747460 GGGTTTTACCGGCGTCCC 60.747 66.667 6.01 2.87 39.83 4.46
764 899 3.117284 AGGGAGGAGAGGAGACTTATGAC 60.117 52.174 0.00 0.00 44.43 3.06
881 1016 3.134792 TTGGCGTTGGCGTTGTGT 61.135 55.556 0.00 0.00 41.24 3.72
908 1061 1.736586 CCGAAGTAGCTGAGGCGAT 59.263 57.895 0.00 0.00 44.37 4.58
1077 1243 1.228510 GGGAGAGCATGAAAGGGGG 59.771 63.158 0.00 0.00 0.00 5.40
1142 1308 1.874466 GTAGCGCTCGAAGTCCTGC 60.874 63.158 16.34 0.00 0.00 4.85
1308 1483 5.420409 GAGAAGACCGAACTGAATTACCAT 58.580 41.667 0.00 0.00 0.00 3.55
1317 1492 0.241213 TCTGCGAGAAGACCGAACTG 59.759 55.000 0.00 0.00 0.00 3.16
1318 1493 0.959553 TTCTGCGAGAAGACCGAACT 59.040 50.000 0.00 0.00 29.50 3.01
1319 1494 1.656095 CATTCTGCGAGAAGACCGAAC 59.344 52.381 0.00 0.00 37.69 3.95
1369 1547 7.716799 ACAGAGAATCAGAGAGAAACTGTAT 57.283 36.000 0.00 0.00 37.82 2.29
1373 1551 5.221601 TGCAACAGAGAATCAGAGAGAAACT 60.222 40.000 0.00 0.00 37.82 2.66
1391 1596 4.183865 CTCGACATTTCTATCCTGCAACA 58.816 43.478 0.00 0.00 0.00 3.33
1462 1667 5.235516 TGGCAAGTAAACTAGCTGAAGTAC 58.764 41.667 0.00 0.00 0.00 2.73
1470 1675 3.891056 AACGTTGGCAAGTAAACTAGC 57.109 42.857 0.00 0.00 0.00 3.42
1514 1719 8.430801 AATTAGCTTATCTCTGCACTTTACAG 57.569 34.615 0.00 0.00 36.44 2.74
1598 1803 1.588082 AAGCGGATGGCAAAGCTTG 59.412 52.632 20.99 0.00 46.64 4.01
1647 1852 4.036144 TCAATTGAAGTGCGTGATTTGACA 59.964 37.500 5.45 0.00 0.00 3.58
1793 2004 5.530915 TGAGTTGTTGTTTAGTAGCAAGCAT 59.469 36.000 0.00 0.00 0.00 3.79
1893 2104 1.272769 AGGTCGCTAACTTCCACTGAC 59.727 52.381 0.00 0.00 0.00 3.51
1969 2180 4.274602 TGGACCGAACAGTATAGCAAAA 57.725 40.909 0.00 0.00 0.00 2.44
1970 2181 3.965379 TGGACCGAACAGTATAGCAAA 57.035 42.857 0.00 0.00 0.00 3.68
1976 2187 6.317893 GGTTTTATTCATGGACCGAACAGTAT 59.682 38.462 0.00 0.00 0.00 2.12
2009 2220 1.129998 CAAGTGAAAGAGAGGCATGCG 59.870 52.381 12.44 0.00 0.00 4.73
2042 2253 7.676004 TCTGGTTATCACAGTTCACAAGATAA 58.324 34.615 0.00 0.00 37.25 1.75
2065 2276 1.267806 CCTGCAAAAAGTCGCACATCT 59.732 47.619 0.00 0.00 33.75 2.90
2078 2289 3.772096 AGGGATTTCTGCCTGCAAA 57.228 47.368 0.00 0.00 42.52 3.68
2202 2415 6.588756 GTGTCAAGGTCTGAAATACACGATAA 59.411 38.462 0.00 0.00 35.22 1.75
2207 2420 4.385825 TGGTGTCAAGGTCTGAAATACAC 58.614 43.478 0.00 0.00 35.22 2.90
2407 2620 6.661805 ACAAAGTAGGAAAAAGAAGTGTCCAA 59.338 34.615 0.00 0.00 32.19 3.53
2440 2653 6.936279 ACTCTATACAACTGTGTAGCACATT 58.064 36.000 8.35 0.00 43.71 2.71
2565 2778 9.730420 GTGAACATGTTAACATTAAGTTGAACT 57.270 29.630 21.10 0.00 41.50 3.01
2566 2779 8.678510 CGTGAACATGTTAACATTAAGTTGAAC 58.321 33.333 23.14 17.57 41.50 3.18
2568 2781 8.144155 TCGTGAACATGTTAACATTAAGTTGA 57.856 30.769 23.14 13.66 41.50 3.18
2580 2832 4.457257 TGAAATGGCATCGTGAACATGTTA 59.543 37.500 11.95 0.00 0.00 2.41
2658 2910 5.381184 TGGCTATAAAGACATTGGCCTTA 57.619 39.130 3.32 0.00 35.10 2.69
2707 2959 6.389906 ACAAAGGTTCTAAATTAGCACATGC 58.610 36.000 5.28 0.00 42.49 4.06
2844 3100 8.750515 TCAGCATCTATCATAATTCAAAACCA 57.249 30.769 0.00 0.00 0.00 3.67
3074 3331 0.825010 CATGGGGGCATAGCTTCACC 60.825 60.000 0.00 0.00 0.00 4.02
3120 3387 3.946606 ACTATTCCACAACTTAACCCCG 58.053 45.455 0.00 0.00 0.00 5.73
3321 3589 1.276421 AGCAATGTTGAGACGGTAGCT 59.724 47.619 0.00 0.00 0.00 3.32
3499 3768 8.292444 CCAAGAAATGGGTCACTGATAAATTA 57.708 34.615 0.00 0.00 46.27 1.40
3520 3789 1.212195 GGCCCTAGTTAACCTCCCAAG 59.788 57.143 0.88 0.00 0.00 3.61
3566 3837 4.526262 ACTTGGTAAATTGCATGTTGGCTA 59.474 37.500 0.00 0.00 34.04 3.93
3567 3838 3.324556 ACTTGGTAAATTGCATGTTGGCT 59.675 39.130 0.00 0.00 34.04 4.75
3568 3839 3.432933 CACTTGGTAAATTGCATGTTGGC 59.567 43.478 0.00 0.00 0.00 4.52
3569 3840 4.630111 ACACTTGGTAAATTGCATGTTGG 58.370 39.130 0.00 0.00 0.00 3.77
3585 3857 7.308229 GCCTAGGATTGCATATTTAGACACTTG 60.308 40.741 14.75 0.00 0.00 3.16
3732 4281 4.010349 GCTGGACCAATTAACTGCTAGTT 58.990 43.478 0.00 6.74 41.97 2.24
3855 4404 5.854010 ATGGTCAGCTAACTTCTATTCGA 57.146 39.130 0.00 0.00 0.00 3.71
4209 4758 2.355716 GCAGTAAAGCATGACCCCAGTA 60.356 50.000 0.00 0.00 0.00 2.74
4224 4773 6.373216 GTCACACTTAAATGGTATGGCAGTAA 59.627 38.462 0.00 0.00 0.00 2.24
4271 5050 8.499403 AAAAGCTCATAGGAACTCATAAAGAC 57.501 34.615 0.00 0.00 41.75 3.01
4320 5099 9.177304 CAACAGCATGCATCTAATACTAATTTG 57.823 33.333 21.98 5.67 42.53 2.32
4327 5106 7.592533 CCAAATACAACAGCATGCATCTAATAC 59.407 37.037 21.98 0.00 42.53 1.89
4372 5152 7.761249 GCCAATCTGCAAATAGTTAGTTTTGAT 59.239 33.333 0.00 0.00 35.34 2.57
4673 5453 2.695055 CTACATTGCACCGACGCG 59.305 61.111 3.53 3.53 33.35 6.01
4991 5777 4.258206 CTGTGGTGCAAACAGGGT 57.742 55.556 18.76 0.00 41.13 4.34
5098 5885 1.553706 CAGGGAGCCAGCAGAAAAAT 58.446 50.000 0.00 0.00 0.00 1.82
5100 5887 1.604593 GCAGGGAGCCAGCAGAAAA 60.605 57.895 0.00 0.00 36.03 2.29
5146 5936 1.872388 TGTTGATGTCCGAAAGCGAA 58.128 45.000 0.00 0.00 40.82 4.70
5174 5964 6.725246 ACAGATTAAGGTGAAGTTCAAAACG 58.275 36.000 7.25 0.00 36.23 3.60
5245 6056 2.680339 GCAGATAAGACTTCCAACAGGC 59.320 50.000 0.00 0.00 0.00 4.85
5551 6387 3.648339 AAGTGAGCATTGACGCATTTT 57.352 38.095 0.00 0.00 0.00 1.82
5620 6456 6.731292 AAGGCTTGTTCTCCACTTAATTTT 57.269 33.333 0.00 0.00 0.00 1.82
5652 6488 3.488678 CAGTCTCATGTATGCAAGCTACG 59.511 47.826 0.00 0.00 0.00 3.51
5761 6597 3.499338 TGATGAGTCAAAACAGCCCATT 58.501 40.909 0.00 0.00 0.00 3.16
5762 6598 3.159213 TGATGAGTCAAAACAGCCCAT 57.841 42.857 0.00 0.00 0.00 4.00
5822 6658 6.047511 ACAAGCTCATCTGTCTTAGTCAAT 57.952 37.500 0.00 0.00 0.00 2.57
5885 6721 2.035617 ATCGGCGTAACATTGCTGCG 62.036 55.000 6.85 0.00 37.40 5.18
6005 6844 7.230849 AGATAAATTCATTGTTGCCAACTGA 57.769 32.000 9.30 2.25 32.26 3.41
6226 7074 8.020819 TGATTGGACAAGTTAAGCGAAAAATAG 58.979 33.333 0.00 0.00 0.00 1.73
6397 7245 0.737219 GCATTGCTGCCTCCTTACAG 59.263 55.000 0.16 0.00 42.88 2.74
6573 7421 6.433716 TCATTTCATCAACTTGCTGACCATTA 59.566 34.615 0.00 0.00 0.00 1.90
6576 7424 4.143543 TCATTTCATCAACTTGCTGACCA 58.856 39.130 0.00 0.00 0.00 4.02
6841 7689 3.600388 CGTGCTTAGAGAAATCCAAGGT 58.400 45.455 0.00 0.00 0.00 3.50
6846 7694 2.317530 AGGCGTGCTTAGAGAAATCC 57.682 50.000 0.00 0.00 0.00 3.01
6861 7709 3.426695 CCTGCAAAAAGATGTTCTAGGCG 60.427 47.826 0.00 0.00 0.00 5.52
6902 7751 1.886222 GCTCCATACAGGGTGCAAACA 60.886 52.381 2.35 0.00 44.70 2.83
7028 7877 6.158598 CCCAAAGGACTTATTGTTTGTGATG 58.841 40.000 0.00 0.00 33.47 3.07
7036 7885 6.152831 GCTTGAATACCCAAAGGACTTATTGT 59.847 38.462 0.00 0.00 36.73 2.71
7044 7893 4.783227 AGTAGAGCTTGAATACCCAAAGGA 59.217 41.667 0.00 0.00 36.73 3.36
7053 7902 5.643777 GCCAAAAGTCAGTAGAGCTTGAATA 59.356 40.000 0.00 0.00 0.00 1.75
7151 8000 3.596319 GCACATTGCTTGAAAACAAACG 58.404 40.909 0.00 0.00 40.96 3.60
7169 8019 1.476891 TGTAGGAATCGGAGTGAGCAC 59.523 52.381 0.00 0.00 0.00 4.40
7183 8033 2.029290 GTCCAAACGAGAAGCTGTAGGA 60.029 50.000 0.00 0.00 0.00 2.94
7331 8181 2.737252 GTTGCTACTGAACACTGCTACC 59.263 50.000 0.00 0.00 0.00 3.18
7459 8309 8.229811 TCGAGTCTTGTGAACAATGAAATTATG 58.770 33.333 0.00 0.00 32.46 1.90
7470 8320 5.405571 GCTCTATTTTCGAGTCTTGTGAACA 59.594 40.000 0.00 0.00 0.00 3.18
7471 8321 5.635700 AGCTCTATTTTCGAGTCTTGTGAAC 59.364 40.000 0.00 0.00 0.00 3.18
7535 8385 3.850173 TCTCTAGCCTACCCCAAATTGTT 59.150 43.478 0.00 0.00 0.00 2.83
7540 8390 2.022428 TCCATCTCTAGCCTACCCCAAA 60.022 50.000 0.00 0.00 0.00 3.28
7551 8401 6.127647 GCCAGATCTATGAGTTCCATCTCTAG 60.128 46.154 0.00 0.00 36.71 2.43
7557 8407 2.301296 CGGCCAGATCTATGAGTTCCAT 59.699 50.000 2.24 0.00 39.25 3.41
7560 8410 1.069204 TGCGGCCAGATCTATGAGTTC 59.931 52.381 2.24 0.00 0.00 3.01
7564 8414 0.610174 GGATGCGGCCAGATCTATGA 59.390 55.000 2.24 0.00 0.00 2.15
7569 8419 2.592861 GGTGGATGCGGCCAGATC 60.593 66.667 2.24 2.59 38.95 2.75
7570 8420 4.552365 CGGTGGATGCGGCCAGAT 62.552 66.667 2.24 0.00 38.95 2.90
7572 8422 3.460672 ATACGGTGGATGCGGCCAG 62.461 63.158 2.24 0.00 38.95 4.85
7573 8423 3.475494 ATACGGTGGATGCGGCCA 61.475 61.111 2.24 0.00 35.02 5.36
7574 8424 2.972505 CATACGGTGGATGCGGCC 60.973 66.667 0.00 0.00 0.00 6.13
7575 8425 3.649986 GCATACGGTGGATGCGGC 61.650 66.667 0.00 0.00 40.29 6.53
7579 8429 1.299541 GTTCCTGCATACGGTGGATG 58.700 55.000 0.00 0.00 0.00 3.51
7580 8430 0.908910 TGTTCCTGCATACGGTGGAT 59.091 50.000 0.00 0.00 0.00 3.41
7581 8431 0.036765 GTGTTCCTGCATACGGTGGA 60.037 55.000 0.00 0.00 0.00 4.02
7582 8432 1.024579 GGTGTTCCTGCATACGGTGG 61.025 60.000 0.00 0.00 0.00 4.61
7583 8433 0.321210 TGGTGTTCCTGCATACGGTG 60.321 55.000 0.00 0.00 34.23 4.94
7584 8434 0.321298 GTGGTGTTCCTGCATACGGT 60.321 55.000 0.00 0.00 34.23 4.83
7585 8435 1.024579 GGTGGTGTTCCTGCATACGG 61.025 60.000 0.00 0.00 34.23 4.02
7586 8436 0.036388 AGGTGGTGTTCCTGCATACG 60.036 55.000 0.00 0.00 33.62 3.06
7587 8437 1.279271 AGAGGTGGTGTTCCTGCATAC 59.721 52.381 0.00 0.00 35.20 2.39
7588 8438 1.656587 AGAGGTGGTGTTCCTGCATA 58.343 50.000 0.00 0.00 35.20 3.14
7589 8439 0.773644 AAGAGGTGGTGTTCCTGCAT 59.226 50.000 0.00 0.00 35.20 3.96
7590 8440 0.550914 AAAGAGGTGGTGTTCCTGCA 59.449 50.000 0.00 0.00 35.20 4.41
7591 8441 0.954452 CAAAGAGGTGGTGTTCCTGC 59.046 55.000 0.00 0.00 35.20 4.85
7592 8442 0.954452 GCAAAGAGGTGGTGTTCCTG 59.046 55.000 0.00 0.00 35.20 3.86
7593 8443 0.550914 TGCAAAGAGGTGGTGTTCCT 59.449 50.000 0.00 0.00 38.09 3.36
7594 8444 1.067060 GTTGCAAAGAGGTGGTGTTCC 59.933 52.381 0.00 0.00 0.00 3.62
7595 8445 1.748493 TGTTGCAAAGAGGTGGTGTTC 59.252 47.619 0.00 0.00 0.00 3.18
7596 8446 1.476488 GTGTTGCAAAGAGGTGGTGTT 59.524 47.619 0.00 0.00 0.00 3.32
7597 8447 1.102978 GTGTTGCAAAGAGGTGGTGT 58.897 50.000 0.00 0.00 0.00 4.16
7598 8448 0.385390 GGTGTTGCAAAGAGGTGGTG 59.615 55.000 0.00 0.00 0.00 4.17
7599 8449 0.755327 GGGTGTTGCAAAGAGGTGGT 60.755 55.000 0.00 0.00 0.00 4.16
7600 8450 1.463553 GGGGTGTTGCAAAGAGGTGG 61.464 60.000 0.00 0.00 0.00 4.61
7601 8451 0.468029 AGGGGTGTTGCAAAGAGGTG 60.468 55.000 0.00 0.00 0.00 4.00
7602 8452 0.468029 CAGGGGTGTTGCAAAGAGGT 60.468 55.000 0.00 0.00 0.00 3.85
7603 8453 1.181098 CCAGGGGTGTTGCAAAGAGG 61.181 60.000 0.00 0.00 0.00 3.69
7604 8454 0.178992 TCCAGGGGTGTTGCAAAGAG 60.179 55.000 0.00 0.00 0.00 2.85
7605 8455 0.260230 TTCCAGGGGTGTTGCAAAGA 59.740 50.000 0.00 0.00 0.00 2.52
7606 8456 0.675633 CTTCCAGGGGTGTTGCAAAG 59.324 55.000 0.00 0.00 0.00 2.77
7607 8457 0.758685 CCTTCCAGGGGTGTTGCAAA 60.759 55.000 0.00 0.00 0.00 3.68
7608 8458 1.152567 CCTTCCAGGGGTGTTGCAA 60.153 57.895 0.00 0.00 0.00 4.08
7609 8459 2.520458 CCTTCCAGGGGTGTTGCA 59.480 61.111 0.00 0.00 0.00 4.08
7626 8476 0.035056 CACATCTCCTGGGTGGTTCC 60.035 60.000 0.00 0.00 37.07 3.62
7627 8477 0.678048 GCACATCTCCTGGGTGGTTC 60.678 60.000 0.00 0.00 37.07 3.62
7628 8478 1.380302 GCACATCTCCTGGGTGGTT 59.620 57.895 0.00 0.00 37.07 3.67
7629 8479 2.959484 CGCACATCTCCTGGGTGGT 61.959 63.158 0.00 0.00 35.00 4.16
7630 8480 2.124983 CGCACATCTCCTGGGTGG 60.125 66.667 0.00 0.00 35.00 4.61
7631 8481 1.448540 GTCGCACATCTCCTGGGTG 60.449 63.158 0.00 0.00 40.30 4.61
7632 8482 1.480212 TTGTCGCACATCTCCTGGGT 61.480 55.000 0.00 0.00 0.00 4.51
7633 8483 0.321564 TTTGTCGCACATCTCCTGGG 60.322 55.000 0.00 0.00 0.00 4.45
7634 8484 1.081892 CTTTGTCGCACATCTCCTGG 58.918 55.000 0.00 0.00 0.00 4.45
7635 8485 1.081892 CCTTTGTCGCACATCTCCTG 58.918 55.000 0.00 0.00 0.00 3.86
7636 8486 0.976641 TCCTTTGTCGCACATCTCCT 59.023 50.000 0.00 0.00 0.00 3.69
7637 8487 1.363744 CTCCTTTGTCGCACATCTCC 58.636 55.000 0.00 0.00 0.00 3.71
7638 8488 0.723981 GCTCCTTTGTCGCACATCTC 59.276 55.000 0.00 0.00 0.00 2.75
7639 8489 1.016130 CGCTCCTTTGTCGCACATCT 61.016 55.000 0.00 0.00 0.00 2.90
7640 8490 1.421485 CGCTCCTTTGTCGCACATC 59.579 57.895 0.00 0.00 0.00 3.06
7641 8491 3.566261 CGCTCCTTTGTCGCACAT 58.434 55.556 0.00 0.00 0.00 3.21
7646 8496 2.258013 TTTGGGCGCTCCTTTGTCG 61.258 57.895 3.94 0.00 36.20 4.35
7647 8497 1.285950 GTTTGGGCGCTCCTTTGTC 59.714 57.895 3.94 0.00 36.20 3.18
7648 8498 2.200337 GGTTTGGGCGCTCCTTTGT 61.200 57.895 3.94 0.00 36.20 2.83
7649 8499 2.650778 GGTTTGGGCGCTCCTTTG 59.349 61.111 3.94 0.00 36.20 2.77
7650 8500 2.600470 GGGTTTGGGCGCTCCTTT 60.600 61.111 3.94 0.00 36.20 3.11
7651 8501 3.444818 TTGGGTTTGGGCGCTCCTT 62.445 57.895 3.94 0.00 36.20 3.36
7652 8502 3.868200 CTTGGGTTTGGGCGCTCCT 62.868 63.158 3.94 0.00 36.20 3.69
7653 8503 3.373565 CTTGGGTTTGGGCGCTCC 61.374 66.667 3.94 6.36 0.00 4.70
7654 8504 3.373565 CCTTGGGTTTGGGCGCTC 61.374 66.667 7.64 2.47 0.00 5.03
7655 8505 3.224007 ATCCTTGGGTTTGGGCGCT 62.224 57.895 7.64 0.00 0.00 5.92
7656 8506 2.679996 ATCCTTGGGTTTGGGCGC 60.680 61.111 0.00 0.00 0.00 6.53
7657 8507 1.595093 GACATCCTTGGGTTTGGGCG 61.595 60.000 0.00 0.00 0.00 6.13
7658 8508 1.257750 GGACATCCTTGGGTTTGGGC 61.258 60.000 0.00 0.00 0.00 5.36
7659 8509 0.965363 CGGACATCCTTGGGTTTGGG 60.965 60.000 0.00 0.00 0.00 4.12
7660 8510 0.965363 CCGGACATCCTTGGGTTTGG 60.965 60.000 0.00 0.00 0.00 3.28
7661 8511 0.037590 TCCGGACATCCTTGGGTTTG 59.962 55.000 0.00 0.00 0.00 2.93
7662 8512 0.774908 TTCCGGACATCCTTGGGTTT 59.225 50.000 1.83 0.00 0.00 3.27
7663 8513 0.328258 CTTCCGGACATCCTTGGGTT 59.672 55.000 1.83 0.00 0.00 4.11
7664 8514 1.562672 CCTTCCGGACATCCTTGGGT 61.563 60.000 1.83 0.00 0.00 4.51
7665 8515 1.224592 CCTTCCGGACATCCTTGGG 59.775 63.158 1.83 0.00 0.00 4.12
7666 8516 0.179000 CTCCTTCCGGACATCCTTGG 59.821 60.000 1.83 0.00 34.92 3.61
7667 8517 0.905357 ACTCCTTCCGGACATCCTTG 59.095 55.000 1.83 0.00 34.92 3.61
7668 8518 1.196012 GACTCCTTCCGGACATCCTT 58.804 55.000 1.83 0.00 34.92 3.36
7669 8519 0.041238 TGACTCCTTCCGGACATCCT 59.959 55.000 1.83 0.00 34.92 3.24
7670 8520 1.123928 ATGACTCCTTCCGGACATCC 58.876 55.000 1.83 0.00 34.92 3.51
7671 8521 1.202580 CCATGACTCCTTCCGGACATC 60.203 57.143 1.83 0.00 34.92 3.06
7672 8522 0.833287 CCATGACTCCTTCCGGACAT 59.167 55.000 1.83 0.00 34.92 3.06
7673 8523 0.252057 TCCATGACTCCTTCCGGACA 60.252 55.000 1.83 0.00 34.92 4.02
7674 8524 0.902531 TTCCATGACTCCTTCCGGAC 59.097 55.000 1.83 0.00 34.92 4.79
7675 8525 1.195115 CTTCCATGACTCCTTCCGGA 58.805 55.000 0.00 0.00 37.82 5.14
7676 8526 0.179000 CCTTCCATGACTCCTTCCGG 59.821 60.000 0.00 0.00 0.00 5.14
7677 8527 0.179000 CCCTTCCATGACTCCTTCCG 59.821 60.000 0.00 0.00 0.00 4.30
7678 8528 0.548510 CCCCTTCCATGACTCCTTCC 59.451 60.000 0.00 0.00 0.00 3.46
7679 8529 1.584724 TCCCCTTCCATGACTCCTTC 58.415 55.000 0.00 0.00 0.00 3.46
7680 8530 2.131023 GATCCCCTTCCATGACTCCTT 58.869 52.381 0.00 0.00 0.00 3.36
7681 8531 1.813102 GATCCCCTTCCATGACTCCT 58.187 55.000 0.00 0.00 0.00 3.69
7682 8532 0.394565 CGATCCCCTTCCATGACTCC 59.605 60.000 0.00 0.00 0.00 3.85
7683 8533 0.250081 GCGATCCCCTTCCATGACTC 60.250 60.000 0.00 0.00 0.00 3.36
7684 8534 1.700042 GGCGATCCCCTTCCATGACT 61.700 60.000 0.00 0.00 0.00 3.41
7685 8535 1.227973 GGCGATCCCCTTCCATGAC 60.228 63.158 0.00 0.00 0.00 3.06
7686 8536 1.692395 TGGCGATCCCCTTCCATGA 60.692 57.895 0.00 0.00 0.00 3.07
7687 8537 1.526917 GTGGCGATCCCCTTCCATG 60.527 63.158 0.00 0.00 0.00 3.66
7688 8538 2.757124 GGTGGCGATCCCCTTCCAT 61.757 63.158 0.00 0.00 0.00 3.41
7689 8539 3.407967 GGTGGCGATCCCCTTCCA 61.408 66.667 0.00 0.00 0.00 3.53
7690 8540 3.406595 CTGGTGGCGATCCCCTTCC 62.407 68.421 0.00 1.64 0.00 3.46
7691 8541 2.190578 CTGGTGGCGATCCCCTTC 59.809 66.667 0.00 0.00 0.00 3.46
7692 8542 4.115199 GCTGGTGGCGATCCCCTT 62.115 66.667 0.00 0.00 0.00 3.95
7701 8551 2.109126 GGAAGATGACGCTGGTGGC 61.109 63.158 0.00 0.00 37.64 5.01
7702 8552 0.460987 GAGGAAGATGACGCTGGTGG 60.461 60.000 0.00 0.00 0.00 4.61
7703 8553 0.803768 CGAGGAAGATGACGCTGGTG 60.804 60.000 0.00 0.00 0.00 4.17
7704 8554 1.251527 ACGAGGAAGATGACGCTGGT 61.252 55.000 0.00 0.00 0.00 4.00
7705 8555 0.803768 CACGAGGAAGATGACGCTGG 60.804 60.000 0.00 0.00 0.00 4.85
7706 8556 0.109086 ACACGAGGAAGATGACGCTG 60.109 55.000 0.00 0.00 0.00 5.18
7707 8557 0.603569 AACACGAGGAAGATGACGCT 59.396 50.000 0.00 0.00 0.00 5.07
7708 8558 1.429463 AAACACGAGGAAGATGACGC 58.571 50.000 0.00 0.00 0.00 5.19
7730 8580 4.864806 CGAGGAAGATGATGTCTCGAAAAA 59.135 41.667 5.26 0.00 46.89 1.94
7731 8581 4.082190 ACGAGGAAGATGATGTCTCGAAAA 60.082 41.667 16.23 0.00 46.89 2.29
7732 8582 3.444034 ACGAGGAAGATGATGTCTCGAAA 59.556 43.478 16.23 0.00 46.89 3.46
7733 8583 3.017442 ACGAGGAAGATGATGTCTCGAA 58.983 45.455 16.23 0.00 46.89 3.71
7734 8584 2.356069 CACGAGGAAGATGATGTCTCGA 59.644 50.000 16.23 0.00 46.89 4.04
7736 8586 3.791973 ACACGAGGAAGATGATGTCTC 57.208 47.619 0.00 0.00 35.67 3.36
7737 8587 5.860941 ATAACACGAGGAAGATGATGTCT 57.139 39.130 0.00 0.00 39.43 3.41
7738 8588 6.042777 TCAATAACACGAGGAAGATGATGTC 58.957 40.000 0.00 0.00 0.00 3.06
7739 8589 5.977635 TCAATAACACGAGGAAGATGATGT 58.022 37.500 0.00 0.00 0.00 3.06
7740 8590 6.565435 GCATCAATAACACGAGGAAGATGATG 60.565 42.308 0.00 0.00 42.64 3.07
7741 8591 5.468072 GCATCAATAACACGAGGAAGATGAT 59.532 40.000 0.00 0.00 34.97 2.45
7742 8592 4.811024 GCATCAATAACACGAGGAAGATGA 59.189 41.667 0.00 0.00 34.97 2.92
7743 8593 4.318333 CGCATCAATAACACGAGGAAGATG 60.318 45.833 0.00 0.00 35.84 2.90
7744 8594 3.804325 CGCATCAATAACACGAGGAAGAT 59.196 43.478 0.00 0.00 0.00 2.40
7745 8595 3.186909 CGCATCAATAACACGAGGAAGA 58.813 45.455 0.00 0.00 0.00 2.87
7746 8596 2.285220 CCGCATCAATAACACGAGGAAG 59.715 50.000 0.00 0.00 0.00 3.46
7747 8597 2.276201 CCGCATCAATAACACGAGGAA 58.724 47.619 0.00 0.00 0.00 3.36
7748 8598 1.934589 CCGCATCAATAACACGAGGA 58.065 50.000 0.00 0.00 0.00 3.71
7749 8599 0.304705 GCCGCATCAATAACACGAGG 59.695 55.000 0.00 0.00 0.00 4.63
7750 8600 1.290203 AGCCGCATCAATAACACGAG 58.710 50.000 0.00 0.00 0.00 4.18
7751 8601 2.588027 TAGCCGCATCAATAACACGA 57.412 45.000 0.00 0.00 0.00 4.35
7752 8602 2.662791 GCATAGCCGCATCAATAACACG 60.663 50.000 0.00 0.00 0.00 4.49
7753 8603 2.350772 GGCATAGCCGCATCAATAACAC 60.351 50.000 0.00 0.00 39.62 3.32
7754 8604 1.879380 GGCATAGCCGCATCAATAACA 59.121 47.619 0.00 0.00 39.62 2.41
7755 8605 2.619013 GGCATAGCCGCATCAATAAC 57.381 50.000 0.00 0.00 39.62 1.89
7767 8617 1.900237 CAAAAGCTTCGTGGCATAGC 58.100 50.000 0.00 10.16 35.16 2.97
7768 8618 1.199789 TGCAAAAGCTTCGTGGCATAG 59.800 47.619 0.00 0.00 34.17 2.23
7769 8619 1.068610 GTGCAAAAGCTTCGTGGCATA 60.069 47.619 14.58 0.00 33.43 3.14
7770 8620 0.318955 GTGCAAAAGCTTCGTGGCAT 60.319 50.000 14.58 0.00 33.43 4.40
7771 8621 1.065600 GTGCAAAAGCTTCGTGGCA 59.934 52.632 0.00 4.77 34.17 4.92
7772 8622 0.591170 TAGTGCAAAAGCTTCGTGGC 59.409 50.000 0.00 1.88 0.00 5.01
7773 8623 2.350772 CCTTAGTGCAAAAGCTTCGTGG 60.351 50.000 0.00 0.00 0.00 4.94
7774 8624 2.548057 TCCTTAGTGCAAAAGCTTCGTG 59.452 45.455 0.00 2.22 0.00 4.35
7775 8625 2.846193 TCCTTAGTGCAAAAGCTTCGT 58.154 42.857 0.00 0.00 0.00 3.85
7776 8626 3.896648 TTCCTTAGTGCAAAAGCTTCG 57.103 42.857 0.00 0.00 0.00 3.79
7777 8627 5.635417 AGATTCCTTAGTGCAAAAGCTTC 57.365 39.130 0.00 0.00 0.00 3.86
7778 8628 6.410942 AAAGATTCCTTAGTGCAAAAGCTT 57.589 33.333 0.00 0.00 31.15 3.74
7779 8629 6.018589 GAAAGATTCCTTAGTGCAAAAGCT 57.981 37.500 4.82 0.00 31.15 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.