Multiple sequence alignment - TraesCS3A01G271200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G271200 chr3A 100.000 2333 0 0 1 2333 499239089 499241421 0.000000e+00 4309
1 TraesCS3A01G271200 chr3A 96.434 645 22 1 1 644 19399671 19400315 0.000000e+00 1062
2 TraesCS3A01G271200 chr3A 98.467 261 4 0 1520 1780 530175193 530175453 5.870000e-126 460
3 TraesCS3A01G271200 chr3A 97.744 266 6 0 1519 1784 359075231 359074966 2.110000e-125 459
4 TraesCS3A01G271200 chr3A 84.585 253 33 5 2047 2296 347908253 347908004 1.790000e-61 246
5 TraesCS3A01G271200 chr7A 96.589 645 20 2 1 643 33357461 33358105 0.000000e+00 1068
6 TraesCS3A01G271200 chr7A 96.434 645 18 5 1 643 211805656 211805015 0.000000e+00 1059
7 TraesCS3A01G271200 chr7A 95.969 645 25 1 1 644 647309835 647309191 0.000000e+00 1046
8 TraesCS3A01G271200 chr4A 96.434 645 22 1 1 644 236002773 236002129 0.000000e+00 1062
9 TraesCS3A01G271200 chr4A 96.981 265 8 0 1519 1783 127287517 127287253 1.640000e-121 446
10 TraesCS3A01G271200 chr1A 96.136 647 21 4 1 643 70693576 70694222 0.000000e+00 1053
11 TraesCS3A01G271200 chr1A 94.665 656 32 3 1 653 473039875 473040530 0.000000e+00 1014
12 TraesCS3A01G271200 chr1A 98.106 264 5 0 1520 1783 541149345 541149608 5.870000e-126 460
13 TraesCS3A01G271200 chr2A 96.130 646 21 4 1 644 71662947 71662304 0.000000e+00 1051
14 TraesCS3A01G271200 chr2A 95.849 265 10 1 1520 1784 310453111 310452848 5.960000e-116 427
15 TraesCS3A01G271200 chr5A 95.814 645 26 1 1 644 567887966 567888610 0.000000e+00 1040
16 TraesCS3A01G271200 chr6B 95.382 628 27 1 895 1522 221488921 221489546 0.000000e+00 998
17 TraesCS3A01G271200 chr6B 95.382 628 27 1 895 1522 221851892 221852517 0.000000e+00 998
18 TraesCS3A01G271200 chr6B 92.857 490 31 4 1847 2333 221852533 221853021 0.000000e+00 708
19 TraesCS3A01G271200 chr6B 91.820 489 37 3 1847 2333 221489562 221490049 0.000000e+00 678
20 TraesCS3A01G271200 chr6B 80.045 441 60 16 979 1417 418180744 418180330 3.770000e-78 302
21 TraesCS3A01G271200 chr6B 78.384 495 67 24 930 1417 418323987 418323526 3.790000e-73 285
22 TraesCS3A01G271200 chr5B 92.936 637 32 5 895 1522 240337792 240338424 0.000000e+00 915
23 TraesCS3A01G271200 chr5B 91.547 556 32 9 1781 2333 240338421 240338964 0.000000e+00 752
24 TraesCS3A01G271200 chr5B 96.935 261 8 0 1520 1780 686537326 686537586 2.750000e-119 438
25 TraesCS3A01G271200 chr4D 92.417 633 41 2 895 1522 220915033 220915663 0.000000e+00 896
26 TraesCS3A01G271200 chr4D 87.738 367 19 14 1855 2219 220915687 220916029 2.790000e-109 405
27 TraesCS3A01G271200 chr4D 78.866 388 55 16 1032 1417 87118065 87117703 1.080000e-58 237
28 TraesCS3A01G271200 chr1B 91.994 637 25 12 895 1522 338040025 338040644 0.000000e+00 870
29 TraesCS3A01G271200 chr1B 91.547 556 32 9 1781 2333 338040641 338041184 0.000000e+00 752
30 TraesCS3A01G271200 chr3D 85.391 575 65 11 954 1521 208027046 208026484 1.550000e-161 579
31 TraesCS3A01G271200 chr3D 79.747 395 69 9 1905 2296 208026371 208025985 2.280000e-70 276
32 TraesCS3A01G271200 chr3D 75.803 467 65 20 901 1356 439093024 439092595 2.370000e-45 193
33 TraesCS3A01G271200 chr7B 98.084 261 5 0 1520 1780 690910103 690909843 2.730000e-124 455
34 TraesCS3A01G271200 chr2B 95.833 264 11 0 1520 1783 150596750 150597013 5.960000e-116 427
35 TraesCS3A01G271200 chr2B 93.286 283 17 1 1498 1780 444489694 444489414 1.290000e-112 416
36 TraesCS3A01G271200 chr6D 80.118 508 80 18 901 1397 173897722 173897225 2.200000e-95 359


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G271200 chr3A 499239089 499241421 2332 False 4309.0 4309 100.0000 1 2333 1 chr3A.!!$F2 2332
1 TraesCS3A01G271200 chr3A 19399671 19400315 644 False 1062.0 1062 96.4340 1 644 1 chr3A.!!$F1 643
2 TraesCS3A01G271200 chr7A 33357461 33358105 644 False 1068.0 1068 96.5890 1 643 1 chr7A.!!$F1 642
3 TraesCS3A01G271200 chr7A 211805015 211805656 641 True 1059.0 1059 96.4340 1 643 1 chr7A.!!$R1 642
4 TraesCS3A01G271200 chr7A 647309191 647309835 644 True 1046.0 1046 95.9690 1 644 1 chr7A.!!$R2 643
5 TraesCS3A01G271200 chr4A 236002129 236002773 644 True 1062.0 1062 96.4340 1 644 1 chr4A.!!$R2 643
6 TraesCS3A01G271200 chr1A 70693576 70694222 646 False 1053.0 1053 96.1360 1 643 1 chr1A.!!$F1 642
7 TraesCS3A01G271200 chr1A 473039875 473040530 655 False 1014.0 1014 94.6650 1 653 1 chr1A.!!$F2 652
8 TraesCS3A01G271200 chr2A 71662304 71662947 643 True 1051.0 1051 96.1300 1 644 1 chr2A.!!$R1 643
9 TraesCS3A01G271200 chr5A 567887966 567888610 644 False 1040.0 1040 95.8140 1 644 1 chr5A.!!$F1 643
10 TraesCS3A01G271200 chr6B 221851892 221853021 1129 False 853.0 998 94.1195 895 2333 2 chr6B.!!$F2 1438
11 TraesCS3A01G271200 chr6B 221488921 221490049 1128 False 838.0 998 93.6010 895 2333 2 chr6B.!!$F1 1438
12 TraesCS3A01G271200 chr5B 240337792 240338964 1172 False 833.5 915 92.2415 895 2333 2 chr5B.!!$F2 1438
13 TraesCS3A01G271200 chr4D 220915033 220916029 996 False 650.5 896 90.0775 895 2219 2 chr4D.!!$F1 1324
14 TraesCS3A01G271200 chr1B 338040025 338041184 1159 False 811.0 870 91.7705 895 2333 2 chr1B.!!$F1 1438
15 TraesCS3A01G271200 chr3D 208025985 208027046 1061 True 427.5 579 82.5690 954 2296 2 chr3D.!!$R2 1342

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 821 0.032403 TGTGGACAAAAGCATGCAGC 59.968 50.0 21.98 1.75 46.19 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1768 1804 0.326264 ACACGTAGTACTCCCTCCGT 59.674 55.0 0.0 0.0 41.61 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
321 324 4.025979 CAGTTTGTAGTTTCGAACTCGCTT 60.026 41.667 0.00 0.00 41.77 4.68
356 361 3.386078 TCCAGCCAAATGTTTTTACAGCA 59.614 39.130 0.00 0.00 0.00 4.41
561 569 2.226912 GCACACCCGCACAAGTTTAATA 59.773 45.455 0.00 0.00 0.00 0.98
604 612 1.601903 GTTCGTGCACCAAACTGATCA 59.398 47.619 12.15 0.00 0.00 2.92
609 617 0.804364 GCACCAAACTGATCATCGCA 59.196 50.000 0.00 0.00 0.00 5.10
673 681 7.807977 AAATGGTGATACAATCATACAGTCC 57.192 36.000 0.00 0.00 42.04 3.85
674 682 5.948742 TGGTGATACAATCATACAGTCCA 57.051 39.130 0.00 0.00 42.04 4.02
675 683 5.917462 TGGTGATACAATCATACAGTCCAG 58.083 41.667 0.00 0.00 42.04 3.86
676 684 4.752101 GGTGATACAATCATACAGTCCAGC 59.248 45.833 0.00 0.00 42.04 4.85
677 685 5.453903 GGTGATACAATCATACAGTCCAGCT 60.454 44.000 0.00 0.00 42.04 4.24
678 686 6.051717 GTGATACAATCATACAGTCCAGCTT 58.948 40.000 0.00 0.00 42.04 3.74
679 687 6.540189 GTGATACAATCATACAGTCCAGCTTT 59.460 38.462 0.00 0.00 42.04 3.51
680 688 6.763135 TGATACAATCATACAGTCCAGCTTTC 59.237 38.462 0.00 0.00 33.59 2.62
681 689 4.910195 ACAATCATACAGTCCAGCTTTCA 58.090 39.130 0.00 0.00 0.00 2.69
682 690 5.316167 ACAATCATACAGTCCAGCTTTCAA 58.684 37.500 0.00 0.00 0.00 2.69
683 691 5.769662 ACAATCATACAGTCCAGCTTTCAAA 59.230 36.000 0.00 0.00 0.00 2.69
684 692 5.886960 ATCATACAGTCCAGCTTTCAAAC 57.113 39.130 0.00 0.00 0.00 2.93
685 693 4.713553 TCATACAGTCCAGCTTTCAAACA 58.286 39.130 0.00 0.00 0.00 2.83
686 694 5.129634 TCATACAGTCCAGCTTTCAAACAA 58.870 37.500 0.00 0.00 0.00 2.83
687 695 3.782889 ACAGTCCAGCTTTCAAACAAC 57.217 42.857 0.00 0.00 0.00 3.32
688 696 3.356290 ACAGTCCAGCTTTCAAACAACT 58.644 40.909 0.00 0.00 0.00 3.16
689 697 4.523083 ACAGTCCAGCTTTCAAACAACTA 58.477 39.130 0.00 0.00 0.00 2.24
690 698 4.576463 ACAGTCCAGCTTTCAAACAACTAG 59.424 41.667 0.00 0.00 0.00 2.57
691 699 4.576463 CAGTCCAGCTTTCAAACAACTAGT 59.424 41.667 0.00 0.00 0.00 2.57
692 700 4.816925 AGTCCAGCTTTCAAACAACTAGTC 59.183 41.667 0.00 0.00 0.00 2.59
693 701 4.816925 GTCCAGCTTTCAAACAACTAGTCT 59.183 41.667 0.00 0.00 0.00 3.24
694 702 4.816385 TCCAGCTTTCAAACAACTAGTCTG 59.184 41.667 0.00 0.00 0.00 3.51
695 703 4.531332 CAGCTTTCAAACAACTAGTCTGC 58.469 43.478 0.00 0.00 0.00 4.26
696 704 4.035558 CAGCTTTCAAACAACTAGTCTGCA 59.964 41.667 0.00 0.00 0.00 4.41
697 705 4.035675 AGCTTTCAAACAACTAGTCTGCAC 59.964 41.667 0.00 0.00 0.00 4.57
698 706 4.201910 GCTTTCAAACAACTAGTCTGCACA 60.202 41.667 0.00 0.00 0.00 4.57
699 707 4.875544 TTCAAACAACTAGTCTGCACAC 57.124 40.909 0.00 0.00 0.00 3.82
700 708 4.137116 TCAAACAACTAGTCTGCACACT 57.863 40.909 0.00 0.00 0.00 3.55
701 709 4.119862 TCAAACAACTAGTCTGCACACTC 58.880 43.478 0.00 0.00 0.00 3.51
702 710 4.122776 CAAACAACTAGTCTGCACACTCT 58.877 43.478 0.00 0.00 0.00 3.24
703 711 3.377346 ACAACTAGTCTGCACACTCTG 57.623 47.619 0.00 0.00 0.00 3.35
704 712 2.695666 ACAACTAGTCTGCACACTCTGT 59.304 45.455 0.00 0.00 0.00 3.41
705 713 3.133003 ACAACTAGTCTGCACACTCTGTT 59.867 43.478 0.00 3.01 0.00 3.16
706 714 3.377346 ACTAGTCTGCACACTCTGTTG 57.623 47.619 0.00 0.00 0.00 3.33
707 715 2.959030 ACTAGTCTGCACACTCTGTTGA 59.041 45.455 0.00 0.00 0.00 3.18
708 716 2.988010 AGTCTGCACACTCTGTTGAA 57.012 45.000 0.00 0.00 0.00 2.69
709 717 3.266510 AGTCTGCACACTCTGTTGAAA 57.733 42.857 0.00 0.00 0.00 2.69
710 718 3.609853 AGTCTGCACACTCTGTTGAAAA 58.390 40.909 0.00 0.00 0.00 2.29
711 719 4.009675 AGTCTGCACACTCTGTTGAAAAA 58.990 39.130 0.00 0.00 0.00 1.94
712 720 4.641989 AGTCTGCACACTCTGTTGAAAAAT 59.358 37.500 0.00 0.00 0.00 1.82
713 721 5.822519 AGTCTGCACACTCTGTTGAAAAATA 59.177 36.000 0.00 0.00 0.00 1.40
714 722 6.488006 AGTCTGCACACTCTGTTGAAAAATAT 59.512 34.615 0.00 0.00 0.00 1.28
715 723 7.013655 AGTCTGCACACTCTGTTGAAAAATATT 59.986 33.333 0.00 0.00 0.00 1.28
716 724 7.649306 GTCTGCACACTCTGTTGAAAAATATTT 59.351 33.333 0.00 0.00 0.00 1.40
717 725 8.845227 TCTGCACACTCTGTTGAAAAATATTTA 58.155 29.630 0.01 0.00 0.00 1.40
718 726 9.462174 CTGCACACTCTGTTGAAAAATATTTAA 57.538 29.630 0.01 0.00 0.00 1.52
719 727 9.809096 TGCACACTCTGTTGAAAAATATTTAAA 57.191 25.926 0.01 0.00 0.00 1.52
731 739 9.941325 TGAAAAATATTTAAATGCATGTCACCT 57.059 25.926 11.05 0.00 0.00 4.00
734 742 9.807649 AAAATATTTAAATGCATGTCACCTCTC 57.192 29.630 11.05 0.00 0.00 3.20
735 743 8.757982 AATATTTAAATGCATGTCACCTCTCT 57.242 30.769 11.05 0.00 0.00 3.10
736 744 6.690194 ATTTAAATGCATGTCACCTCTCTC 57.310 37.500 0.00 0.00 0.00 3.20
737 745 3.996921 AAATGCATGTCACCTCTCTCT 57.003 42.857 0.00 0.00 0.00 3.10
738 746 3.540314 AATGCATGTCACCTCTCTCTC 57.460 47.619 0.00 0.00 0.00 3.20
739 747 1.928868 TGCATGTCACCTCTCTCTCA 58.071 50.000 0.00 0.00 0.00 3.27
740 748 1.547820 TGCATGTCACCTCTCTCTCAC 59.452 52.381 0.00 0.00 0.00 3.51
741 749 1.824230 GCATGTCACCTCTCTCTCACT 59.176 52.381 0.00 0.00 0.00 3.41
742 750 2.417107 GCATGTCACCTCTCTCTCACTG 60.417 54.545 0.00 0.00 0.00 3.66
743 751 2.666272 TGTCACCTCTCTCTCACTGT 57.334 50.000 0.00 0.00 0.00 3.55
744 752 3.790089 TGTCACCTCTCTCTCACTGTA 57.210 47.619 0.00 0.00 0.00 2.74
745 753 3.680490 TGTCACCTCTCTCTCACTGTAG 58.320 50.000 0.00 0.00 0.00 2.74
746 754 2.422127 GTCACCTCTCTCTCACTGTAGC 59.578 54.545 0.00 0.00 0.00 3.58
747 755 2.040412 TCACCTCTCTCTCACTGTAGCA 59.960 50.000 0.00 0.00 0.00 3.49
748 756 2.163412 CACCTCTCTCTCACTGTAGCAC 59.837 54.545 0.00 0.00 0.00 4.40
749 757 2.224892 ACCTCTCTCTCACTGTAGCACA 60.225 50.000 0.00 0.00 0.00 4.57
750 758 2.822561 CCTCTCTCTCACTGTAGCACAA 59.177 50.000 0.00 0.00 0.00 3.33
751 759 3.119531 CCTCTCTCTCACTGTAGCACAAG 60.120 52.174 0.00 0.00 0.00 3.16
752 760 3.755905 CTCTCTCTCACTGTAGCACAAGA 59.244 47.826 0.00 0.00 0.00 3.02
753 761 3.504134 TCTCTCTCACTGTAGCACAAGAC 59.496 47.826 0.00 0.00 0.00 3.01
754 762 3.222603 TCTCTCACTGTAGCACAAGACA 58.777 45.455 0.00 0.00 0.00 3.41
755 763 3.254411 TCTCTCACTGTAGCACAAGACAG 59.746 47.826 0.59 0.59 46.95 3.51
756 764 3.222603 TCTCACTGTAGCACAAGACAGA 58.777 45.455 8.91 0.00 44.88 3.41
757 765 3.829026 TCTCACTGTAGCACAAGACAGAT 59.171 43.478 8.91 0.00 44.88 2.90
758 766 3.917988 TCACTGTAGCACAAGACAGATG 58.082 45.455 8.91 4.26 44.88 2.90
759 767 3.573967 TCACTGTAGCACAAGACAGATGA 59.426 43.478 8.91 6.23 44.88 2.92
760 768 4.221482 TCACTGTAGCACAAGACAGATGAT 59.779 41.667 8.91 0.00 44.88 2.45
761 769 4.329256 CACTGTAGCACAAGACAGATGATG 59.671 45.833 8.91 0.00 44.88 3.07
762 770 3.264947 TGTAGCACAAGACAGATGATGC 58.735 45.455 0.00 0.00 0.00 3.91
763 771 2.484742 AGCACAAGACAGATGATGCA 57.515 45.000 0.00 0.00 35.51 3.96
764 772 2.786777 AGCACAAGACAGATGATGCAA 58.213 42.857 0.00 0.00 35.51 4.08
765 773 2.747989 AGCACAAGACAGATGATGCAAG 59.252 45.455 0.00 0.00 35.51 4.01
766 774 2.745821 GCACAAGACAGATGATGCAAGA 59.254 45.455 0.00 0.00 33.27 3.02
767 775 3.425892 GCACAAGACAGATGATGCAAGAC 60.426 47.826 0.00 0.00 33.27 3.01
768 776 3.749609 CACAAGACAGATGATGCAAGACA 59.250 43.478 0.00 0.00 0.00 3.41
769 777 4.214758 CACAAGACAGATGATGCAAGACAA 59.785 41.667 0.00 0.00 0.00 3.18
770 778 4.823442 ACAAGACAGATGATGCAAGACAAA 59.177 37.500 0.00 0.00 0.00 2.83
771 779 5.300034 ACAAGACAGATGATGCAAGACAAAA 59.700 36.000 0.00 0.00 0.00 2.44
772 780 5.624344 AGACAGATGATGCAAGACAAAAG 57.376 39.130 0.00 0.00 0.00 2.27
773 781 4.082895 AGACAGATGATGCAAGACAAAAGC 60.083 41.667 0.00 0.00 0.00 3.51
774 782 3.825014 ACAGATGATGCAAGACAAAAGCT 59.175 39.130 0.00 0.00 0.00 3.74
775 783 4.280174 ACAGATGATGCAAGACAAAAGCTT 59.720 37.500 0.00 0.00 0.00 3.74
776 784 4.621460 CAGATGATGCAAGACAAAAGCTTG 59.379 41.667 0.00 0.00 44.22 4.01
777 785 3.374220 TGATGCAAGACAAAAGCTTGG 57.626 42.857 0.00 0.00 42.23 3.61
778 786 2.036217 TGATGCAAGACAAAAGCTTGGG 59.964 45.455 0.00 0.00 42.23 4.12
779 787 1.774110 TGCAAGACAAAAGCTTGGGA 58.226 45.000 0.00 0.00 42.23 4.37
780 788 1.682854 TGCAAGACAAAAGCTTGGGAG 59.317 47.619 0.00 0.00 42.23 4.30
781 789 1.000171 GCAAGACAAAAGCTTGGGAGG 60.000 52.381 0.00 0.00 42.23 4.30
782 790 1.000171 CAAGACAAAAGCTTGGGAGGC 60.000 52.381 0.00 0.00 39.18 4.70
783 791 0.480252 AGACAAAAGCTTGGGAGGCT 59.520 50.000 0.00 0.00 42.31 4.58
784 792 0.600057 GACAAAAGCTTGGGAGGCTG 59.400 55.000 0.00 0.00 40.19 4.85
785 793 0.106015 ACAAAAGCTTGGGAGGCTGT 60.106 50.000 0.00 0.00 40.19 4.40
786 794 0.316204 CAAAAGCTTGGGAGGCTGTG 59.684 55.000 0.00 0.00 40.19 3.66
787 795 1.466851 AAAAGCTTGGGAGGCTGTGC 61.467 55.000 0.00 0.00 40.19 4.57
788 796 4.711949 AGCTTGGGAGGCTGTGCG 62.712 66.667 0.00 0.00 38.73 5.34
790 798 2.281761 CTTGGGAGGCTGTGCGTT 60.282 61.111 0.00 0.00 0.00 4.84
791 799 2.594303 TTGGGAGGCTGTGCGTTG 60.594 61.111 0.00 0.00 0.00 4.10
794 802 2.980233 GGAGGCTGTGCGTTGCTT 60.980 61.111 0.00 0.00 0.00 3.91
795 803 2.253452 GAGGCTGTGCGTTGCTTG 59.747 61.111 0.00 0.00 0.00 4.01
796 804 2.516930 AGGCTGTGCGTTGCTTGT 60.517 55.556 0.00 0.00 0.00 3.16
797 805 2.353839 GGCTGTGCGTTGCTTGTG 60.354 61.111 0.00 0.00 0.00 3.33
798 806 2.353839 GCTGTGCGTTGCTTGTGG 60.354 61.111 0.00 0.00 0.00 4.17
799 807 2.833533 GCTGTGCGTTGCTTGTGGA 61.834 57.895 0.00 0.00 0.00 4.02
800 808 1.009675 CTGTGCGTTGCTTGTGGAC 60.010 57.895 0.00 0.00 0.00 4.02
801 809 1.713937 CTGTGCGTTGCTTGTGGACA 61.714 55.000 0.00 0.00 32.86 4.02
802 810 1.308783 TGTGCGTTGCTTGTGGACAA 61.309 50.000 0.00 0.00 30.76 3.18
803 811 0.179150 GTGCGTTGCTTGTGGACAAA 60.179 50.000 0.00 0.00 35.15 2.83
804 812 0.528017 TGCGTTGCTTGTGGACAAAA 59.472 45.000 0.00 0.00 35.15 2.44
805 813 1.199624 GCGTTGCTTGTGGACAAAAG 58.800 50.000 0.00 0.00 35.15 2.27
810 818 1.142474 GCTTGTGGACAAAAGCATGC 58.858 50.000 19.55 10.51 46.45 4.06
811 819 1.538634 GCTTGTGGACAAAAGCATGCA 60.539 47.619 21.98 0.00 46.45 3.96
812 820 2.400399 CTTGTGGACAAAAGCATGCAG 58.600 47.619 21.98 9.13 35.15 4.41
813 821 0.032403 TGTGGACAAAAGCATGCAGC 59.968 50.000 21.98 1.75 46.19 5.25
814 822 4.111644 TTGTGGACAAAAGCATGCAGCA 62.112 45.455 21.98 0.00 38.20 4.41
815 823 5.894015 TTGTGGACAAAAGCATGCAGCAG 62.894 47.826 21.98 9.51 38.20 4.24
826 834 3.985877 GCAGCAGCACATGGTACA 58.014 55.556 0.00 0.00 42.35 2.90
827 835 2.485677 GCAGCAGCACATGGTACAT 58.514 52.632 0.00 0.00 42.32 2.29
828 836 0.379669 GCAGCAGCACATGGTACATC 59.620 55.000 0.00 0.00 42.32 3.06
829 837 2.282807 GCAGCAGCACATGGTACATCA 61.283 52.381 0.00 0.00 42.32 3.07
830 838 3.583840 GCAGCAGCACATGGTACATCAT 61.584 50.000 0.00 0.00 42.32 2.45
846 854 5.023533 ACATCATGTCATGTACAGTACCC 57.976 43.478 12.54 0.00 42.70 3.69
847 855 4.716784 ACATCATGTCATGTACAGTACCCT 59.283 41.667 12.54 0.00 42.70 4.34
848 856 4.736126 TCATGTCATGTACAGTACCCTG 57.264 45.455 12.54 6.21 42.70 4.45
849 857 3.450817 TCATGTCATGTACAGTACCCTGG 59.549 47.826 12.54 0.00 42.70 4.45
850 858 2.897350 TGTCATGTACAGTACCCTGGT 58.103 47.619 8.30 0.00 43.36 4.00
851 859 4.050315 TGTCATGTACAGTACCCTGGTA 57.950 45.455 8.30 0.00 43.36 3.25
852 860 4.616553 TGTCATGTACAGTACCCTGGTAT 58.383 43.478 8.30 0.00 43.36 2.73
853 861 5.768752 TGTCATGTACAGTACCCTGGTATA 58.231 41.667 8.30 0.00 43.36 1.47
854 862 5.831525 TGTCATGTACAGTACCCTGGTATAG 59.168 44.000 8.30 0.00 43.36 1.31
855 863 5.243283 GTCATGTACAGTACCCTGGTATAGG 59.757 48.000 8.30 0.00 46.88 2.57
856 864 3.569491 TGTACAGTACCCTGGTATAGGC 58.431 50.000 8.30 0.00 45.89 3.93
857 865 1.700955 ACAGTACCCTGGTATAGGCG 58.299 55.000 0.00 0.00 45.89 5.52
858 866 1.063417 ACAGTACCCTGGTATAGGCGT 60.063 52.381 0.00 0.00 45.89 5.68
859 867 1.612463 CAGTACCCTGGTATAGGCGTC 59.388 57.143 0.00 0.00 45.89 5.19
860 868 1.216175 AGTACCCTGGTATAGGCGTCA 59.784 52.381 0.00 0.00 45.89 4.35
861 869 1.612463 GTACCCTGGTATAGGCGTCAG 59.388 57.143 0.00 0.00 45.89 3.51
862 870 0.260816 ACCCTGGTATAGGCGTCAGA 59.739 55.000 0.00 0.00 45.89 3.27
863 871 0.962489 CCCTGGTATAGGCGTCAGAG 59.038 60.000 0.00 0.00 45.89 3.35
864 872 1.693627 CCTGGTATAGGCGTCAGAGT 58.306 55.000 0.00 0.00 40.38 3.24
865 873 2.488528 CCCTGGTATAGGCGTCAGAGTA 60.489 54.545 0.00 0.00 45.89 2.59
866 874 3.422796 CCTGGTATAGGCGTCAGAGTAT 58.577 50.000 0.00 0.00 40.38 2.12
867 875 3.827302 CCTGGTATAGGCGTCAGAGTATT 59.173 47.826 0.00 0.00 40.38 1.89
868 876 5.008331 CCTGGTATAGGCGTCAGAGTATTA 58.992 45.833 0.00 0.00 40.38 0.98
869 877 5.475909 CCTGGTATAGGCGTCAGAGTATTAA 59.524 44.000 0.00 0.00 40.38 1.40
870 878 6.349445 CCTGGTATAGGCGTCAGAGTATTAAG 60.349 46.154 0.00 0.00 40.38 1.85
871 879 5.048224 TGGTATAGGCGTCAGAGTATTAAGC 60.048 44.000 0.00 0.00 0.00 3.09
872 880 2.493713 AGGCGTCAGAGTATTAAGCG 57.506 50.000 0.00 0.00 0.00 4.68
873 881 1.067212 AGGCGTCAGAGTATTAAGCGG 59.933 52.381 0.00 0.00 0.00 5.52
874 882 0.853419 GCGTCAGAGTATTAAGCGGC 59.147 55.000 0.00 0.00 0.00 6.53
875 883 1.801395 GCGTCAGAGTATTAAGCGGCA 60.801 52.381 1.45 0.00 0.00 5.69
876 884 2.536365 CGTCAGAGTATTAAGCGGCAA 58.464 47.619 1.45 0.00 0.00 4.52
877 885 2.535984 CGTCAGAGTATTAAGCGGCAAG 59.464 50.000 1.45 0.00 0.00 4.01
898 906 1.378514 CCTGGTGCGGTGGCTTATT 60.379 57.895 0.00 0.00 40.82 1.40
901 909 1.272212 CTGGTGCGGTGGCTTATTTTT 59.728 47.619 0.00 0.00 40.82 1.94
976 989 6.958767 TGAGAAAGATAGGAAAAGGGTAAGG 58.041 40.000 0.00 0.00 0.00 2.69
977 990 6.069615 TGAGAAAGATAGGAAAAGGGTAAGGG 60.070 42.308 0.00 0.00 0.00 3.95
1247 1260 1.269517 GCTTCTCATCGAGCCCTACTG 60.270 57.143 0.00 0.00 0.00 2.74
1258 1271 2.042843 CCTACTGCCCCTCCGTCT 60.043 66.667 0.00 0.00 0.00 4.18
1342 1355 2.601666 ACCAGTGAGCCGAGCTGA 60.602 61.111 2.98 0.00 39.88 4.26
1397 1410 1.683319 GGCAAGGAATCAAGAGGGGAC 60.683 57.143 0.00 0.00 0.00 4.46
1467 1500 2.979649 GAGGGGACGGAAGGACAC 59.020 66.667 0.00 0.00 0.00 3.67
1468 1501 1.609794 GAGGGGACGGAAGGACACT 60.610 63.158 0.00 0.00 0.00 3.55
1506 1542 5.353123 TCAAGAGCTACGTTTTTGTTTCAGT 59.647 36.000 0.00 0.00 0.00 3.41
1518 1554 8.840867 CGTTTTTGTTTCAGTATATTCAAGAGC 58.159 33.333 0.00 0.00 0.00 4.09
1519 1555 9.899226 GTTTTTGTTTCAGTATATTCAAGAGCT 57.101 29.630 0.00 0.00 0.00 4.09
1522 1558 9.944376 TTTGTTTCAGTATATTCAAGAGCTACT 57.056 29.630 0.00 0.00 0.00 2.57
1523 1559 9.587772 TTGTTTCAGTATATTCAAGAGCTACTC 57.412 33.333 0.00 0.00 0.00 2.59
1524 1560 8.198109 TGTTTCAGTATATTCAAGAGCTACTCC 58.802 37.037 0.00 0.00 0.00 3.85
1525 1561 6.902771 TCAGTATATTCAAGAGCTACTCCC 57.097 41.667 0.00 0.00 0.00 4.30
1526 1562 6.615617 TCAGTATATTCAAGAGCTACTCCCT 58.384 40.000 0.00 0.00 0.00 4.20
1527 1563 6.717540 TCAGTATATTCAAGAGCTACTCCCTC 59.282 42.308 0.00 0.00 0.00 4.30
1528 1564 6.014012 AGTATATTCAAGAGCTACTCCCTCC 58.986 44.000 0.00 0.00 0.00 4.30
1529 1565 2.623418 TTCAAGAGCTACTCCCTCCA 57.377 50.000 0.00 0.00 0.00 3.86
1530 1566 2.856760 TCAAGAGCTACTCCCTCCAT 57.143 50.000 0.00 0.00 0.00 3.41
1531 1567 3.121929 TCAAGAGCTACTCCCTCCATT 57.878 47.619 0.00 0.00 0.00 3.16
1532 1568 3.034635 TCAAGAGCTACTCCCTCCATTC 58.965 50.000 0.00 0.00 0.00 2.67
1533 1569 2.095604 AGAGCTACTCCCTCCATTCC 57.904 55.000 0.00 0.00 0.00 3.01
1534 1570 1.292242 AGAGCTACTCCCTCCATTCCA 59.708 52.381 0.00 0.00 0.00 3.53
1535 1571 1.414550 GAGCTACTCCCTCCATTCCAC 59.585 57.143 0.00 0.00 0.00 4.02
1536 1572 1.204146 GCTACTCCCTCCATTCCACA 58.796 55.000 0.00 0.00 0.00 4.17
1537 1573 1.559682 GCTACTCCCTCCATTCCACAA 59.440 52.381 0.00 0.00 0.00 3.33
1538 1574 2.173569 GCTACTCCCTCCATTCCACAAT 59.826 50.000 0.00 0.00 0.00 2.71
1539 1575 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
1540 1576 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
1541 1577 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
1542 1578 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
1543 1579 2.092429 TCCCTCCATTCCACAATGTAGC 60.092 50.000 0.00 0.00 38.22 3.58
1544 1580 1.942657 CCTCCATTCCACAATGTAGCG 59.057 52.381 0.00 0.00 38.22 4.26
1545 1581 1.331756 CTCCATTCCACAATGTAGCGC 59.668 52.381 0.00 0.00 38.22 5.92
1546 1582 1.093972 CCATTCCACAATGTAGCGCA 58.906 50.000 11.47 0.00 38.22 6.09
1547 1583 1.677576 CCATTCCACAATGTAGCGCAT 59.322 47.619 11.47 0.00 38.22 4.73
1548 1584 2.877786 CCATTCCACAATGTAGCGCATA 59.122 45.455 11.47 0.00 38.22 3.14
1549 1585 3.503363 CCATTCCACAATGTAGCGCATAT 59.497 43.478 11.47 0.00 38.22 1.78
1550 1586 4.694982 CCATTCCACAATGTAGCGCATATA 59.305 41.667 11.47 0.00 38.22 0.86
1551 1587 5.163824 CCATTCCACAATGTAGCGCATATAG 60.164 44.000 11.47 0.00 38.22 1.31
1552 1588 4.864704 TCCACAATGTAGCGCATATAGA 57.135 40.909 11.47 0.00 36.67 1.98
1553 1589 5.405935 TCCACAATGTAGCGCATATAGAT 57.594 39.130 11.47 0.00 36.67 1.98
1554 1590 5.793817 TCCACAATGTAGCGCATATAGATT 58.206 37.500 11.47 0.41 36.67 2.40
1555 1591 6.230472 TCCACAATGTAGCGCATATAGATTT 58.770 36.000 11.47 0.00 36.67 2.17
1556 1592 6.710295 TCCACAATGTAGCGCATATAGATTTT 59.290 34.615 11.47 0.00 36.67 1.82
1557 1593 7.228507 TCCACAATGTAGCGCATATAGATTTTT 59.771 33.333 11.47 0.00 36.67 1.94
1558 1594 7.535258 CCACAATGTAGCGCATATAGATTTTTC 59.465 37.037 11.47 0.00 36.67 2.29
1559 1595 8.285394 CACAATGTAGCGCATATAGATTTTTCT 58.715 33.333 11.47 0.00 36.67 2.52
1560 1596 9.489084 ACAATGTAGCGCATATAGATTTTTCTA 57.511 29.630 11.47 0.00 36.67 2.10
1567 1603 9.109393 AGCGCATATAGATTTTTCTAAAAGTCA 57.891 29.630 11.47 1.42 37.17 3.41
1568 1604 9.716507 GCGCATATAGATTTTTCTAAAAGTCAA 57.283 29.630 0.30 0.46 37.17 3.18
1600 1636 6.405278 AACTTTGACCAAATTTGTAGAGGG 57.595 37.500 16.73 3.08 0.00 4.30
1601 1637 5.701224 ACTTTGACCAAATTTGTAGAGGGA 58.299 37.500 16.73 0.00 0.00 4.20
1602 1638 6.133356 ACTTTGACCAAATTTGTAGAGGGAA 58.867 36.000 16.73 2.42 0.00 3.97
1603 1639 6.782494 ACTTTGACCAAATTTGTAGAGGGAAT 59.218 34.615 16.73 0.00 0.00 3.01
1604 1640 6.834168 TTGACCAAATTTGTAGAGGGAATC 57.166 37.500 16.73 1.84 0.00 2.52
1605 1641 5.886609 TGACCAAATTTGTAGAGGGAATCA 58.113 37.500 16.73 4.05 0.00 2.57
1606 1642 6.493166 TGACCAAATTTGTAGAGGGAATCAT 58.507 36.000 16.73 0.00 0.00 2.45
1607 1643 7.638444 TGACCAAATTTGTAGAGGGAATCATA 58.362 34.615 16.73 0.00 0.00 2.15
1608 1644 8.281531 TGACCAAATTTGTAGAGGGAATCATAT 58.718 33.333 16.73 0.00 0.00 1.78
1609 1645 9.793259 GACCAAATTTGTAGAGGGAATCATATA 57.207 33.333 16.73 0.00 0.00 0.86
1610 1646 9.574516 ACCAAATTTGTAGAGGGAATCATATAC 57.425 33.333 16.73 0.00 0.00 1.47
1611 1647 9.573166 CCAAATTTGTAGAGGGAATCATATACA 57.427 33.333 16.73 0.00 0.00 2.29
1634 1670 8.383318 ACATCTAGAATACCAAATACATGTGC 57.617 34.615 9.11 0.00 0.00 4.57
1635 1671 8.213679 ACATCTAGAATACCAAATACATGTGCT 58.786 33.333 9.11 0.00 0.00 4.40
1636 1672 9.060347 CATCTAGAATACCAAATACATGTGCTT 57.940 33.333 9.11 0.00 0.00 3.91
1638 1674 9.764363 TCTAGAATACCAAATACATGTGCTTAG 57.236 33.333 9.11 0.00 0.00 2.18
1639 1675 9.764363 CTAGAATACCAAATACATGTGCTTAGA 57.236 33.333 9.11 0.00 0.00 2.10
1643 1679 9.845740 AATACCAAATACATGTGCTTAGATACA 57.154 29.630 9.11 0.00 0.00 2.29
1645 1681 8.383318 ACCAAATACATGTGCTTAGATACATC 57.617 34.615 9.11 0.00 35.46 3.06
1646 1682 7.992608 ACCAAATACATGTGCTTAGATACATCA 59.007 33.333 9.11 0.00 35.46 3.07
1647 1683 8.285394 CCAAATACATGTGCTTAGATACATCAC 58.715 37.037 9.11 0.00 35.46 3.06
1648 1684 8.829612 CAAATACATGTGCTTAGATACATCACA 58.170 33.333 9.11 0.00 41.18 3.58
1649 1685 8.962884 AATACATGTGCTTAGATACATCACAA 57.037 30.769 9.11 0.00 40.46 3.33
1650 1686 6.915544 ACATGTGCTTAGATACATCACAAG 57.084 37.500 0.00 0.00 40.46 3.16
1651 1687 6.643388 ACATGTGCTTAGATACATCACAAGA 58.357 36.000 0.00 0.00 40.46 3.02
1652 1688 6.536582 ACATGTGCTTAGATACATCACAAGAC 59.463 38.462 0.00 4.73 40.46 3.01
1653 1689 6.036577 TGTGCTTAGATACATCACAAGACA 57.963 37.500 7.43 6.40 35.08 3.41
1654 1690 6.643388 TGTGCTTAGATACATCACAAGACAT 58.357 36.000 7.43 0.00 35.08 3.06
1655 1691 7.781056 TGTGCTTAGATACATCACAAGACATA 58.219 34.615 7.43 2.88 35.08 2.29
1656 1692 7.706607 TGTGCTTAGATACATCACAAGACATAC 59.293 37.037 7.43 0.00 35.08 2.39
1657 1693 7.923344 GTGCTTAGATACATCACAAGACATACT 59.077 37.037 7.43 0.00 0.00 2.12
1658 1694 8.478066 TGCTTAGATACATCACAAGACATACTT 58.522 33.333 7.43 0.00 39.70 2.24
1659 1695 9.319143 GCTTAGATACATCACAAGACATACTTT 57.681 33.333 7.43 0.00 36.61 2.66
1757 1793 9.489084 TGACTTTATAAACAATCTATATGCGCT 57.511 29.630 9.73 0.00 0.00 5.92
1766 1802 7.776933 ACAATCTATATGCGCTACATTATGG 57.223 36.000 9.73 0.89 40.38 2.74
1767 1803 7.555965 ACAATCTATATGCGCTACATTATGGA 58.444 34.615 9.73 6.23 40.38 3.41
1768 1804 8.040727 ACAATCTATATGCGCTACATTATGGAA 58.959 33.333 9.73 0.00 40.38 3.53
1769 1805 8.331022 CAATCTATATGCGCTACATTATGGAAC 58.669 37.037 9.73 0.00 40.38 3.62
1770 1806 6.033966 TCTATATGCGCTACATTATGGAACG 58.966 40.000 9.73 0.00 40.38 3.95
1771 1807 1.577468 TGCGCTACATTATGGAACGG 58.423 50.000 9.73 0.00 0.00 4.44
1772 1808 1.137282 TGCGCTACATTATGGAACGGA 59.863 47.619 9.73 0.00 0.00 4.69
1773 1809 1.792949 GCGCTACATTATGGAACGGAG 59.207 52.381 0.00 0.00 0.00 4.63
1774 1810 2.404215 CGCTACATTATGGAACGGAGG 58.596 52.381 0.00 0.00 0.00 4.30
1775 1811 2.767505 GCTACATTATGGAACGGAGGG 58.232 52.381 0.00 0.00 0.00 4.30
1776 1812 2.367567 GCTACATTATGGAACGGAGGGA 59.632 50.000 0.00 0.00 0.00 4.20
1777 1813 3.555168 GCTACATTATGGAACGGAGGGAG 60.555 52.174 0.00 0.00 0.00 4.30
1778 1814 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
1779 1815 3.649843 ACATTATGGAACGGAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
1802 1838 2.205074 ACGTGTGAGTGAGCTTCAAAG 58.795 47.619 0.00 0.00 0.00 2.77
1804 1840 2.474359 CGTGTGAGTGAGCTTCAAAGAG 59.526 50.000 0.00 0.00 0.00 2.85
1806 1842 3.740321 GTGTGAGTGAGCTTCAAAGAGAG 59.260 47.826 0.00 0.00 0.00 3.20
1807 1843 3.638627 TGTGAGTGAGCTTCAAAGAGAGA 59.361 43.478 0.00 0.00 0.00 3.10
1808 1844 4.236935 GTGAGTGAGCTTCAAAGAGAGAG 58.763 47.826 0.00 0.00 0.00 3.20
1809 1845 4.022416 GTGAGTGAGCTTCAAAGAGAGAGA 60.022 45.833 0.00 0.00 0.00 3.10
1810 1846 4.218200 TGAGTGAGCTTCAAAGAGAGAGAG 59.782 45.833 0.00 0.00 0.00 3.20
1816 1852 4.946157 AGCTTCAAAGAGAGAGAGAGAGAG 59.054 45.833 0.00 0.00 0.00 3.20
1838 1874 1.739035 CGTGTGAGTGTGTGAAGGTGT 60.739 52.381 0.00 0.00 0.00 4.16
1840 1876 1.299541 GTGAGTGTGTGAAGGTGTGG 58.700 55.000 0.00 0.00 0.00 4.17
1886 1923 3.552890 GGCTTCCACCAGAAAAATGTGTC 60.553 47.826 0.00 0.00 32.88 3.67
1915 1954 0.753479 ATCTCCGTGATCCTGCTCGT 60.753 55.000 0.00 0.00 0.00 4.18
1919 1958 0.108615 CCGTGATCCTGCTCGTCTTT 60.109 55.000 0.00 0.00 0.00 2.52
2055 2124 9.630098 CCTATAATGCTTTATGCTGTAAAATGG 57.370 33.333 13.61 0.00 43.37 3.16
2169 2244 5.239306 CACCATCACAACTATCAACACAGTT 59.761 40.000 0.00 0.00 35.38 3.16
2195 2270 1.376166 CGTATCCGGCAAACCCACA 60.376 57.895 0.00 0.00 0.00 4.17
2203 2278 0.537371 GGCAAACCCACAGCTACAGT 60.537 55.000 0.00 0.00 0.00 3.55
2239 2314 9.918630 CCAAAGAATTCAGTGATAAAGTTTGAT 57.081 29.630 8.44 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 243 2.357323 TCGTGCTTGCTGTTTCATTTGA 59.643 40.909 0.00 0.00 0.00 2.69
356 361 0.252197 GGTCCCAGCCGTCAGTATTT 59.748 55.000 0.00 0.00 0.00 1.40
454 461 0.323360 GGCCCATTGTCAGTGCCTAA 60.323 55.000 0.00 0.00 39.05 2.69
561 569 4.640789 TGCAAAATACGTGTTTCTGGTT 57.359 36.364 10.88 0.00 0.00 3.67
604 612 1.459592 GTCTTACAACTTGCGTGCGAT 59.540 47.619 0.00 0.00 0.00 4.58
609 617 5.989777 ACATTAGAAGTCTTACAACTTGCGT 59.010 36.000 0.00 0.00 39.55 5.24
649 657 7.345691 TGGACTGTATGATTGTATCACCATTT 58.654 34.615 0.00 0.00 43.01 2.32
652 660 5.684813 GCTGGACTGTATGATTGTATCACCA 60.685 44.000 0.00 0.00 43.01 4.17
653 661 4.752101 GCTGGACTGTATGATTGTATCACC 59.248 45.833 0.00 0.00 43.01 4.02
654 662 5.605534 AGCTGGACTGTATGATTGTATCAC 58.394 41.667 0.00 0.00 43.01 3.06
655 663 5.876651 AGCTGGACTGTATGATTGTATCA 57.123 39.130 0.00 0.00 44.55 2.15
656 664 6.763135 TGAAAGCTGGACTGTATGATTGTATC 59.237 38.462 0.00 0.00 0.00 2.24
657 665 6.653020 TGAAAGCTGGACTGTATGATTGTAT 58.347 36.000 0.00 0.00 0.00 2.29
658 666 6.048732 TGAAAGCTGGACTGTATGATTGTA 57.951 37.500 0.00 0.00 0.00 2.41
659 667 4.910195 TGAAAGCTGGACTGTATGATTGT 58.090 39.130 0.00 0.00 0.00 2.71
660 668 5.885230 TTGAAAGCTGGACTGTATGATTG 57.115 39.130 0.00 0.00 0.00 2.67
661 669 5.769662 TGTTTGAAAGCTGGACTGTATGATT 59.230 36.000 0.00 0.00 0.00 2.57
662 670 5.316167 TGTTTGAAAGCTGGACTGTATGAT 58.684 37.500 0.00 0.00 0.00 2.45
663 671 4.713553 TGTTTGAAAGCTGGACTGTATGA 58.286 39.130 0.00 0.00 0.00 2.15
664 672 5.009010 AGTTGTTTGAAAGCTGGACTGTATG 59.991 40.000 0.00 0.00 0.00 2.39
665 673 5.133221 AGTTGTTTGAAAGCTGGACTGTAT 58.867 37.500 0.00 0.00 0.00 2.29
666 674 4.523083 AGTTGTTTGAAAGCTGGACTGTA 58.477 39.130 0.00 0.00 0.00 2.74
667 675 3.356290 AGTTGTTTGAAAGCTGGACTGT 58.644 40.909 0.00 0.00 0.00 3.55
668 676 4.576463 ACTAGTTGTTTGAAAGCTGGACTG 59.424 41.667 0.00 0.00 0.00 3.51
669 677 4.781934 ACTAGTTGTTTGAAAGCTGGACT 58.218 39.130 0.00 0.00 0.00 3.85
670 678 4.816925 AGACTAGTTGTTTGAAAGCTGGAC 59.183 41.667 0.00 0.00 0.00 4.02
671 679 4.816385 CAGACTAGTTGTTTGAAAGCTGGA 59.184 41.667 0.00 0.00 33.11 3.86
672 680 4.555511 GCAGACTAGTTGTTTGAAAGCTGG 60.556 45.833 0.00 0.00 33.11 4.85
673 681 4.035558 TGCAGACTAGTTGTTTGAAAGCTG 59.964 41.667 0.00 0.00 33.11 4.24
674 682 4.035675 GTGCAGACTAGTTGTTTGAAAGCT 59.964 41.667 0.00 0.00 33.11 3.74
675 683 4.201910 TGTGCAGACTAGTTGTTTGAAAGC 60.202 41.667 0.00 0.00 33.11 3.51
676 684 5.065218 AGTGTGCAGACTAGTTGTTTGAAAG 59.935 40.000 15.99 0.00 33.11 2.62
677 685 4.941263 AGTGTGCAGACTAGTTGTTTGAAA 59.059 37.500 15.99 0.00 33.11 2.69
678 686 4.513442 AGTGTGCAGACTAGTTGTTTGAA 58.487 39.130 15.99 0.00 33.11 2.69
679 687 4.119862 GAGTGTGCAGACTAGTTGTTTGA 58.880 43.478 17.62 0.00 33.11 2.69
680 688 4.025396 CAGAGTGTGCAGACTAGTTGTTTG 60.025 45.833 17.62 3.65 34.30 2.93
681 689 4.122776 CAGAGTGTGCAGACTAGTTGTTT 58.877 43.478 17.62 0.00 0.00 2.83
682 690 3.133003 ACAGAGTGTGCAGACTAGTTGTT 59.867 43.478 17.62 4.67 0.00 2.83
683 691 2.695666 ACAGAGTGTGCAGACTAGTTGT 59.304 45.455 17.62 17.41 0.00 3.32
684 692 3.377346 ACAGAGTGTGCAGACTAGTTG 57.623 47.619 17.62 16.80 0.00 3.16
685 693 3.384789 TCAACAGAGTGTGCAGACTAGTT 59.615 43.478 17.62 19.97 0.00 2.24
686 694 2.959030 TCAACAGAGTGTGCAGACTAGT 59.041 45.455 17.62 15.32 0.00 2.57
687 695 3.650070 TCAACAGAGTGTGCAGACTAG 57.350 47.619 17.62 14.67 0.00 2.57
688 696 4.400529 TTTCAACAGAGTGTGCAGACTA 57.599 40.909 17.62 0.00 0.00 2.59
689 697 2.988010 TTCAACAGAGTGTGCAGACT 57.012 45.000 17.63 17.63 0.00 3.24
690 698 4.355543 TTTTTCAACAGAGTGTGCAGAC 57.644 40.909 5.72 5.72 0.00 3.51
691 699 6.882610 ATATTTTTCAACAGAGTGTGCAGA 57.117 33.333 0.00 0.00 0.00 4.26
692 700 7.935338 AAATATTTTTCAACAGAGTGTGCAG 57.065 32.000 0.00 0.00 0.00 4.41
693 701 9.809096 TTTAAATATTTTTCAACAGAGTGTGCA 57.191 25.926 5.91 0.00 0.00 4.57
705 713 9.941325 AGGTGACATGCATTTAAATATTTTTCA 57.059 25.926 5.91 0.00 0.00 2.69
708 716 9.807649 GAGAGGTGACATGCATTTAAATATTTT 57.192 29.630 5.91 0.00 0.00 1.82
709 717 9.193806 AGAGAGGTGACATGCATTTAAATATTT 57.806 29.630 5.89 5.89 0.00 1.40
710 718 8.757982 AGAGAGGTGACATGCATTTAAATATT 57.242 30.769 0.00 0.00 0.00 1.28
711 719 8.216423 AGAGAGAGGTGACATGCATTTAAATAT 58.784 33.333 0.00 0.00 0.00 1.28
712 720 7.568349 AGAGAGAGGTGACATGCATTTAAATA 58.432 34.615 0.00 0.00 0.00 1.40
713 721 6.421485 AGAGAGAGGTGACATGCATTTAAAT 58.579 36.000 0.00 0.00 0.00 1.40
714 722 5.809001 AGAGAGAGGTGACATGCATTTAAA 58.191 37.500 0.00 0.00 0.00 1.52
715 723 5.046376 TGAGAGAGAGGTGACATGCATTTAA 60.046 40.000 0.00 0.00 0.00 1.52
716 724 4.467438 TGAGAGAGAGGTGACATGCATTTA 59.533 41.667 0.00 0.00 0.00 1.40
717 725 3.262660 TGAGAGAGAGGTGACATGCATTT 59.737 43.478 0.00 0.00 0.00 2.32
718 726 2.836372 TGAGAGAGAGGTGACATGCATT 59.164 45.455 0.00 0.00 0.00 3.56
719 727 2.168106 GTGAGAGAGAGGTGACATGCAT 59.832 50.000 0.00 0.00 0.00 3.96
720 728 1.547820 GTGAGAGAGAGGTGACATGCA 59.452 52.381 0.00 0.00 0.00 3.96
721 729 1.824230 AGTGAGAGAGAGGTGACATGC 59.176 52.381 0.00 0.00 0.00 4.06
722 730 2.824936 ACAGTGAGAGAGAGGTGACATG 59.175 50.000 0.00 0.00 0.00 3.21
723 731 3.168035 ACAGTGAGAGAGAGGTGACAT 57.832 47.619 0.00 0.00 0.00 3.06
724 732 2.666272 ACAGTGAGAGAGAGGTGACA 57.334 50.000 0.00 0.00 0.00 3.58
725 733 2.422127 GCTACAGTGAGAGAGAGGTGAC 59.578 54.545 0.00 0.00 0.00 3.67
726 734 2.040412 TGCTACAGTGAGAGAGAGGTGA 59.960 50.000 0.00 0.00 0.00 4.02
727 735 2.163412 GTGCTACAGTGAGAGAGAGGTG 59.837 54.545 0.00 0.00 0.00 4.00
728 736 2.224892 TGTGCTACAGTGAGAGAGAGGT 60.225 50.000 0.00 0.00 0.00 3.85
729 737 2.441410 TGTGCTACAGTGAGAGAGAGG 58.559 52.381 0.00 0.00 0.00 3.69
730 738 3.755905 TCTTGTGCTACAGTGAGAGAGAG 59.244 47.826 0.00 0.00 0.00 3.20
731 739 3.504134 GTCTTGTGCTACAGTGAGAGAGA 59.496 47.826 0.00 0.00 0.00 3.10
732 740 3.254411 TGTCTTGTGCTACAGTGAGAGAG 59.746 47.826 0.00 0.00 0.00 3.20
733 741 3.222603 TGTCTTGTGCTACAGTGAGAGA 58.777 45.455 0.00 0.00 0.00 3.10
734 742 3.254411 TCTGTCTTGTGCTACAGTGAGAG 59.746 47.826 0.00 0.00 42.96 3.20
735 743 3.222603 TCTGTCTTGTGCTACAGTGAGA 58.777 45.455 0.00 0.00 42.96 3.27
736 744 3.650070 TCTGTCTTGTGCTACAGTGAG 57.350 47.619 0.00 0.00 42.96 3.51
737 745 3.573967 TCATCTGTCTTGTGCTACAGTGA 59.426 43.478 0.00 0.00 42.96 3.41
738 746 3.917988 TCATCTGTCTTGTGCTACAGTG 58.082 45.455 0.00 0.00 42.96 3.66
739 747 4.502016 CATCATCTGTCTTGTGCTACAGT 58.498 43.478 0.00 0.00 42.96 3.55
740 748 3.309138 GCATCATCTGTCTTGTGCTACAG 59.691 47.826 0.00 0.00 43.63 2.74
741 749 3.264947 GCATCATCTGTCTTGTGCTACA 58.735 45.455 0.00 0.00 0.00 2.74
742 750 3.264947 TGCATCATCTGTCTTGTGCTAC 58.735 45.455 0.00 0.00 33.95 3.58
743 751 3.615224 TGCATCATCTGTCTTGTGCTA 57.385 42.857 0.00 0.00 33.95 3.49
744 752 2.484742 TGCATCATCTGTCTTGTGCT 57.515 45.000 0.00 0.00 33.95 4.40
745 753 2.745821 TCTTGCATCATCTGTCTTGTGC 59.254 45.455 0.00 0.00 0.00 4.57
746 754 3.749609 TGTCTTGCATCATCTGTCTTGTG 59.250 43.478 0.00 0.00 0.00 3.33
747 755 4.011966 TGTCTTGCATCATCTGTCTTGT 57.988 40.909 0.00 0.00 0.00 3.16
748 756 5.366829 TTTGTCTTGCATCATCTGTCTTG 57.633 39.130 0.00 0.00 0.00 3.02
749 757 5.564259 GCTTTTGTCTTGCATCATCTGTCTT 60.564 40.000 0.00 0.00 0.00 3.01
750 758 4.082895 GCTTTTGTCTTGCATCATCTGTCT 60.083 41.667 0.00 0.00 0.00 3.41
751 759 4.082895 AGCTTTTGTCTTGCATCATCTGTC 60.083 41.667 0.00 0.00 0.00 3.51
752 760 3.825014 AGCTTTTGTCTTGCATCATCTGT 59.175 39.130 0.00 0.00 0.00 3.41
753 761 4.436242 AGCTTTTGTCTTGCATCATCTG 57.564 40.909 0.00 0.00 0.00 2.90
754 762 4.321750 CCAAGCTTTTGTCTTGCATCATCT 60.322 41.667 0.00 0.00 39.54 2.90
755 763 3.924686 CCAAGCTTTTGTCTTGCATCATC 59.075 43.478 0.00 0.00 39.54 2.92
756 764 3.306502 CCCAAGCTTTTGTCTTGCATCAT 60.307 43.478 0.00 0.00 39.54 2.45
757 765 2.036217 CCCAAGCTTTTGTCTTGCATCA 59.964 45.455 0.00 0.00 39.54 3.07
758 766 2.297033 TCCCAAGCTTTTGTCTTGCATC 59.703 45.455 0.00 0.00 39.54 3.91
759 767 2.298163 CTCCCAAGCTTTTGTCTTGCAT 59.702 45.455 0.00 0.00 39.54 3.96
760 768 1.682854 CTCCCAAGCTTTTGTCTTGCA 59.317 47.619 0.00 0.00 39.54 4.08
761 769 1.000171 CCTCCCAAGCTTTTGTCTTGC 60.000 52.381 0.00 0.00 39.54 4.01
762 770 1.000171 GCCTCCCAAGCTTTTGTCTTG 60.000 52.381 0.00 0.00 40.31 3.02
763 771 1.133356 AGCCTCCCAAGCTTTTGTCTT 60.133 47.619 0.00 0.00 37.24 3.01
764 772 0.480252 AGCCTCCCAAGCTTTTGTCT 59.520 50.000 0.00 0.00 37.24 3.41
765 773 0.600057 CAGCCTCCCAAGCTTTTGTC 59.400 55.000 0.00 0.00 38.95 3.18
766 774 0.106015 ACAGCCTCCCAAGCTTTTGT 60.106 50.000 0.00 0.00 38.95 2.83
767 775 0.316204 CACAGCCTCCCAAGCTTTTG 59.684 55.000 0.00 0.00 38.95 2.44
768 776 1.466851 GCACAGCCTCCCAAGCTTTT 61.467 55.000 0.00 0.00 38.95 2.27
769 777 1.905354 GCACAGCCTCCCAAGCTTT 60.905 57.895 0.00 0.00 38.95 3.51
770 778 2.282745 GCACAGCCTCCCAAGCTT 60.283 61.111 0.00 0.00 38.95 3.74
771 779 4.711949 CGCACAGCCTCCCAAGCT 62.712 66.667 0.00 0.00 42.70 3.74
773 781 2.281761 AACGCACAGCCTCCCAAG 60.282 61.111 0.00 0.00 0.00 3.61
774 782 2.594303 CAACGCACAGCCTCCCAA 60.594 61.111 0.00 0.00 0.00 4.12
777 785 2.980233 AAGCAACGCACAGCCTCC 60.980 61.111 0.00 0.00 0.00 4.30
778 786 2.253452 CAAGCAACGCACAGCCTC 59.747 61.111 0.00 0.00 0.00 4.70
779 787 2.516930 ACAAGCAACGCACAGCCT 60.517 55.556 0.00 0.00 0.00 4.58
780 788 2.353839 CACAAGCAACGCACAGCC 60.354 61.111 0.00 0.00 0.00 4.85
781 789 2.353839 CCACAAGCAACGCACAGC 60.354 61.111 0.00 0.00 0.00 4.40
782 790 1.009675 GTCCACAAGCAACGCACAG 60.010 57.895 0.00 0.00 0.00 3.66
783 791 1.308783 TTGTCCACAAGCAACGCACA 61.309 50.000 0.00 0.00 0.00 4.57
784 792 0.179150 TTTGTCCACAAGCAACGCAC 60.179 50.000 0.00 0.00 37.15 5.34
785 793 0.528017 TTTTGTCCACAAGCAACGCA 59.472 45.000 0.00 0.00 37.15 5.24
786 794 1.199624 CTTTTGTCCACAAGCAACGC 58.800 50.000 0.00 0.00 37.15 4.84
787 795 1.199624 GCTTTTGTCCACAAGCAACG 58.800 50.000 12.08 0.00 44.18 4.10
791 799 1.142474 GCATGCTTTTGTCCACAAGC 58.858 50.000 11.37 10.46 44.87 4.01
792 800 2.400399 CTGCATGCTTTTGTCCACAAG 58.600 47.619 20.33 0.00 37.15 3.16
793 801 1.538634 GCTGCATGCTTTTGTCCACAA 60.539 47.619 20.33 0.00 38.95 3.33
794 802 0.032403 GCTGCATGCTTTTGTCCACA 59.968 50.000 20.33 0.00 38.95 4.17
795 803 0.032403 TGCTGCATGCTTTTGTCCAC 59.968 50.000 20.33 0.00 43.37 4.02
796 804 0.315886 CTGCTGCATGCTTTTGTCCA 59.684 50.000 20.33 4.54 43.37 4.02
797 805 1.012486 GCTGCTGCATGCTTTTGTCC 61.012 55.000 20.33 0.00 43.37 4.02
798 806 0.319211 TGCTGCTGCATGCTTTTGTC 60.319 50.000 20.33 4.49 45.31 3.18
799 807 1.743391 TGCTGCTGCATGCTTTTGT 59.257 47.368 20.33 0.00 45.31 2.83
800 808 4.665431 TGCTGCTGCATGCTTTTG 57.335 50.000 20.33 8.01 45.31 2.44
809 817 0.379669 GATGTACCATGTGCTGCTGC 59.620 55.000 8.89 8.89 40.20 5.25
810 818 1.741528 TGATGTACCATGTGCTGCTG 58.258 50.000 0.00 0.00 0.00 4.41
811 819 2.294979 CATGATGTACCATGTGCTGCT 58.705 47.619 0.00 0.00 39.16 4.24
812 820 2.768833 CATGATGTACCATGTGCTGC 57.231 50.000 4.45 0.00 39.16 5.25
823 831 5.897250 AGGGTACTGTACATGACATGATGTA 59.103 40.000 22.19 14.04 37.45 2.29
824 832 4.716784 AGGGTACTGTACATGACATGATGT 59.283 41.667 22.19 14.89 37.45 3.06
825 833 5.052481 CAGGGTACTGTACATGACATGATG 58.948 45.833 22.19 10.41 39.92 3.07
826 834 4.101585 CCAGGGTACTGTACATGACATGAT 59.898 45.833 22.19 8.80 43.36 2.45
827 835 3.450817 CCAGGGTACTGTACATGACATGA 59.549 47.826 22.19 3.13 43.36 3.07
828 836 3.197766 ACCAGGGTACTGTACATGACATG 59.802 47.826 18.79 14.02 43.36 3.21
829 837 3.450904 ACCAGGGTACTGTACATGACAT 58.549 45.455 18.79 0.00 43.36 3.06
830 838 2.897350 ACCAGGGTACTGTACATGACA 58.103 47.619 18.79 0.00 43.36 3.58
831 839 5.243283 CCTATACCAGGGTACTGTACATGAC 59.757 48.000 18.79 6.67 43.36 3.06
832 840 5.391256 CCTATACCAGGGTACTGTACATGA 58.609 45.833 18.79 3.92 43.36 3.07
833 841 4.021368 GCCTATACCAGGGTACTGTACATG 60.021 50.000 18.79 15.43 45.66 3.21
834 842 4.158015 GCCTATACCAGGGTACTGTACAT 58.842 47.826 18.79 4.86 45.66 2.29
835 843 3.569491 GCCTATACCAGGGTACTGTACA 58.431 50.000 18.79 0.00 45.66 2.90
836 844 2.555757 CGCCTATACCAGGGTACTGTAC 59.444 54.545 9.46 9.46 45.66 2.90
837 845 2.175499 ACGCCTATACCAGGGTACTGTA 59.825 50.000 0.00 0.00 45.66 2.74
838 846 1.063417 ACGCCTATACCAGGGTACTGT 60.063 52.381 0.00 0.00 45.66 3.55
839 847 1.612463 GACGCCTATACCAGGGTACTG 59.388 57.143 0.00 0.00 45.66 2.74
840 848 1.216175 TGACGCCTATACCAGGGTACT 59.784 52.381 0.00 0.00 45.66 2.73
841 849 1.612463 CTGACGCCTATACCAGGGTAC 59.388 57.143 0.00 0.00 45.66 3.34
842 850 1.496001 TCTGACGCCTATACCAGGGTA 59.504 52.381 0.00 0.00 45.66 3.69
843 851 0.260816 TCTGACGCCTATACCAGGGT 59.739 55.000 0.00 0.00 45.66 4.34
844 852 0.962489 CTCTGACGCCTATACCAGGG 59.038 60.000 0.00 0.00 45.66 4.45
846 854 6.570672 TTAATACTCTGACGCCTATACCAG 57.429 41.667 0.00 0.00 0.00 4.00
847 855 5.048224 GCTTAATACTCTGACGCCTATACCA 60.048 44.000 0.00 0.00 0.00 3.25
848 856 5.400703 GCTTAATACTCTGACGCCTATACC 58.599 45.833 0.00 0.00 0.00 2.73
849 857 5.087397 CGCTTAATACTCTGACGCCTATAC 58.913 45.833 0.00 0.00 0.00 1.47
850 858 4.155462 CCGCTTAATACTCTGACGCCTATA 59.845 45.833 0.00 0.00 0.00 1.31
851 859 3.057456 CCGCTTAATACTCTGACGCCTAT 60.057 47.826 0.00 0.00 0.00 2.57
852 860 2.292569 CCGCTTAATACTCTGACGCCTA 59.707 50.000 0.00 0.00 0.00 3.93
853 861 1.067212 CCGCTTAATACTCTGACGCCT 59.933 52.381 0.00 0.00 0.00 5.52
854 862 1.488527 CCGCTTAATACTCTGACGCC 58.511 55.000 0.00 0.00 0.00 5.68
855 863 0.853419 GCCGCTTAATACTCTGACGC 59.147 55.000 0.00 0.00 0.00 5.19
856 864 2.203800 TGCCGCTTAATACTCTGACG 57.796 50.000 0.00 0.00 0.00 4.35
857 865 2.285488 GCTTGCCGCTTAATACTCTGAC 59.715 50.000 0.00 0.00 35.14 3.51
858 866 2.550978 GCTTGCCGCTTAATACTCTGA 58.449 47.619 0.00 0.00 35.14 3.27
859 867 1.599542 GGCTTGCCGCTTAATACTCTG 59.400 52.381 0.00 0.00 39.13 3.35
860 868 1.475213 GGGCTTGCCGCTTAATACTCT 60.475 52.381 5.49 0.00 39.13 3.24
861 869 0.945099 GGGCTTGCCGCTTAATACTC 59.055 55.000 5.49 0.00 39.13 2.59
862 870 0.465642 GGGGCTTGCCGCTTAATACT 60.466 55.000 19.46 0.00 39.13 2.12
863 871 0.465642 AGGGGCTTGCCGCTTAATAC 60.466 55.000 22.90 0.00 39.13 1.89
864 872 0.465460 CAGGGGCTTGCCGCTTAATA 60.465 55.000 25.41 0.00 39.13 0.98
865 873 1.754234 CAGGGGCTTGCCGCTTAAT 60.754 57.895 25.41 5.51 39.13 1.40
866 874 2.361104 CAGGGGCTTGCCGCTTAA 60.361 61.111 25.41 0.00 39.13 1.85
867 875 4.424711 CCAGGGGCTTGCCGCTTA 62.425 66.667 25.41 0.00 39.13 3.09
879 887 2.837031 AATAAGCCACCGCACCAGGG 62.837 60.000 0.00 0.00 37.52 4.45
880 888 0.965363 AAATAAGCCACCGCACCAGG 60.965 55.000 0.00 0.00 37.52 4.45
881 889 0.887933 AAAATAAGCCACCGCACCAG 59.112 50.000 0.00 0.00 37.52 4.00
882 890 1.000283 CAAAAATAAGCCACCGCACCA 60.000 47.619 0.00 0.00 37.52 4.17
883 891 1.000394 ACAAAAATAAGCCACCGCACC 60.000 47.619 0.00 0.00 37.52 5.01
884 892 2.432206 ACAAAAATAAGCCACCGCAC 57.568 45.000 0.00 0.00 37.52 5.34
885 893 3.460857 AAACAAAAATAAGCCACCGCA 57.539 38.095 0.00 0.00 37.52 5.69
886 894 3.366724 GCTAAACAAAAATAAGCCACCGC 59.633 43.478 0.00 0.00 0.00 5.68
892 900 8.594687 CATGTGTATGGCTAAACAAAAATAAGC 58.405 33.333 0.00 0.00 28.88 3.09
893 901 8.594687 GCATGTGTATGGCTAAACAAAAATAAG 58.405 33.333 0.00 0.00 34.79 1.73
898 906 5.242615 TCTGCATGTGTATGGCTAAACAAAA 59.757 36.000 0.00 0.00 34.79 2.44
901 909 3.940852 CTCTGCATGTGTATGGCTAAACA 59.059 43.478 0.00 0.00 34.79 2.83
996 1009 3.490933 CCTGAATTCGGCGACTCATTCTA 60.491 47.826 24.77 14.78 31.20 2.10
1226 1239 0.032815 GTAGGGCTCGATGAGAAGCC 59.967 60.000 4.81 4.81 40.28 4.35
1247 1260 2.266055 CAACAGAGACGGAGGGGC 59.734 66.667 0.00 0.00 0.00 5.80
1258 1271 1.533033 TCTCAGGCCGGTCAACAGA 60.533 57.895 9.71 2.69 0.00 3.41
1397 1410 3.490348 AGATTCCCAACAACACCTCAAG 58.510 45.455 0.00 0.00 0.00 3.02
1467 1500 5.995446 AGCTCTTGACTAATCCCCTTTTAG 58.005 41.667 0.00 0.00 33.73 1.85
1468 1501 6.406624 CGTAGCTCTTGACTAATCCCCTTTTA 60.407 42.308 0.00 0.00 0.00 1.52
1506 1542 5.965486 TGGAGGGAGTAGCTCTTGAATATA 58.035 41.667 0.00 0.00 0.00 0.86
1518 1554 3.200825 ACATTGTGGAATGGAGGGAGTAG 59.799 47.826 0.00 0.00 43.00 2.57
1519 1555 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
1520 1556 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
1521 1557 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
1522 1558 2.092429 GCTACATTGTGGAATGGAGGGA 60.092 50.000 4.11 0.00 46.97 4.20
1523 1559 2.301346 GCTACATTGTGGAATGGAGGG 58.699 52.381 4.11 0.00 46.97 4.30
1524 1560 1.942657 CGCTACATTGTGGAATGGAGG 59.057 52.381 4.11 0.00 46.97 4.30
1526 1562 1.339535 TGCGCTACATTGTGGAATGGA 60.340 47.619 9.73 0.00 43.00 3.41
1527 1563 1.093972 TGCGCTACATTGTGGAATGG 58.906 50.000 9.73 0.00 43.00 3.16
1528 1564 4.754372 ATATGCGCTACATTGTGGAATG 57.246 40.909 9.73 0.00 44.11 2.67
1529 1565 5.793817 TCTATATGCGCTACATTGTGGAAT 58.206 37.500 9.73 0.00 40.38 3.01
1530 1566 5.208463 TCTATATGCGCTACATTGTGGAA 57.792 39.130 9.73 0.00 40.38 3.53
1531 1567 4.864704 TCTATATGCGCTACATTGTGGA 57.135 40.909 9.73 0.00 40.38 4.02
1532 1568 6.486253 AAATCTATATGCGCTACATTGTGG 57.514 37.500 9.73 0.00 40.38 4.17
1533 1569 8.285394 AGAAAAATCTATATGCGCTACATTGTG 58.715 33.333 9.73 0.00 40.38 3.33
1534 1570 8.383318 AGAAAAATCTATATGCGCTACATTGT 57.617 30.769 9.73 0.00 40.38 2.71
1541 1577 9.109393 TGACTTTTAGAAAAATCTATATGCGCT 57.891 29.630 9.73 0.00 0.00 5.92
1542 1578 9.716507 TTGACTTTTAGAAAAATCTATATGCGC 57.283 29.630 0.00 0.00 0.00 6.09
1574 1610 8.585018 CCCTCTACAAATTTGGTCAAAGTTTAT 58.415 33.333 21.74 0.00 36.60 1.40
1575 1611 7.780745 TCCCTCTACAAATTTGGTCAAAGTTTA 59.219 33.333 21.74 1.75 36.60 2.01
1576 1612 6.609616 TCCCTCTACAAATTTGGTCAAAGTTT 59.390 34.615 21.74 0.60 36.60 2.66
1577 1613 6.133356 TCCCTCTACAAATTTGGTCAAAGTT 58.867 36.000 21.74 3.69 38.88 2.66
1578 1614 5.701224 TCCCTCTACAAATTTGGTCAAAGT 58.299 37.500 21.74 2.02 33.32 2.66
1579 1615 6.648879 TTCCCTCTACAAATTTGGTCAAAG 57.351 37.500 21.74 11.03 33.32 2.77
1580 1616 6.780031 TGATTCCCTCTACAAATTTGGTCAAA 59.220 34.615 21.74 7.40 34.46 2.69
1581 1617 6.310941 TGATTCCCTCTACAAATTTGGTCAA 58.689 36.000 21.74 5.51 0.00 3.18
1582 1618 5.886609 TGATTCCCTCTACAAATTTGGTCA 58.113 37.500 21.74 6.23 0.00 4.02
1583 1619 8.697507 ATATGATTCCCTCTACAAATTTGGTC 57.302 34.615 21.74 6.52 0.00 4.02
1584 1620 9.574516 GTATATGATTCCCTCTACAAATTTGGT 57.425 33.333 21.74 10.18 0.00 3.67
1585 1621 9.573166 TGTATATGATTCCCTCTACAAATTTGG 57.427 33.333 21.74 5.67 0.00 3.28
1608 1644 9.489084 GCACATGTATTTGGTATTCTAGATGTA 57.511 33.333 0.00 0.00 29.88 2.29
1609 1645 8.213679 AGCACATGTATTTGGTATTCTAGATGT 58.786 33.333 0.00 0.00 30.73 3.06
1610 1646 8.613060 AGCACATGTATTTGGTATTCTAGATG 57.387 34.615 0.00 0.00 0.00 2.90
1612 1648 9.764363 CTAAGCACATGTATTTGGTATTCTAGA 57.236 33.333 0.00 0.00 0.00 2.43
1613 1649 9.764363 TCTAAGCACATGTATTTGGTATTCTAG 57.236 33.333 0.00 0.00 0.00 2.43
1617 1653 9.845740 TGTATCTAAGCACATGTATTTGGTATT 57.154 29.630 0.00 0.00 0.00 1.89
1619 1655 9.489084 GATGTATCTAAGCACATGTATTTGGTA 57.511 33.333 0.00 0.00 35.55 3.25
1620 1656 7.992608 TGATGTATCTAAGCACATGTATTTGGT 59.007 33.333 0.00 0.00 35.55 3.67
1621 1657 8.285394 GTGATGTATCTAAGCACATGTATTTGG 58.715 37.037 0.00 0.00 35.55 3.28
1622 1658 8.829612 TGTGATGTATCTAAGCACATGTATTTG 58.170 33.333 0.00 0.00 35.55 2.32
1623 1659 8.962884 TGTGATGTATCTAAGCACATGTATTT 57.037 30.769 0.00 0.00 35.55 1.40
1624 1660 8.962884 TTGTGATGTATCTAAGCACATGTATT 57.037 30.769 0.00 0.00 39.00 1.89
1625 1661 8.424133 TCTTGTGATGTATCTAAGCACATGTAT 58.576 33.333 0.00 0.00 39.00 2.29
1626 1662 7.706607 GTCTTGTGATGTATCTAAGCACATGTA 59.293 37.037 0.00 0.00 39.00 2.29
1627 1663 6.536582 GTCTTGTGATGTATCTAAGCACATGT 59.463 38.462 0.00 0.00 39.00 3.21
1628 1664 6.536224 TGTCTTGTGATGTATCTAAGCACATG 59.464 38.462 0.00 0.00 39.00 3.21
1629 1665 6.643388 TGTCTTGTGATGTATCTAAGCACAT 58.357 36.000 0.00 0.00 39.00 3.21
1630 1666 6.036577 TGTCTTGTGATGTATCTAAGCACA 57.963 37.500 0.00 0.00 37.66 4.57
1631 1667 7.923344 AGTATGTCTTGTGATGTATCTAAGCAC 59.077 37.037 0.00 0.00 0.00 4.40
1632 1668 8.011844 AGTATGTCTTGTGATGTATCTAAGCA 57.988 34.615 0.00 0.00 0.00 3.91
1633 1669 8.879342 AAGTATGTCTTGTGATGTATCTAAGC 57.121 34.615 0.00 0.00 34.77 3.09
1694 1730 9.628500 ACTTTGACCAAGTTTATAGAGAAAACT 57.372 29.630 0.00 0.00 43.89 2.66
1731 1767 9.489084 AGCGCATATAGATTGTTTATAAAGTCA 57.511 29.630 11.47 0.00 0.00 3.41
1740 1776 8.668353 CCATAATGTAGCGCATATAGATTGTTT 58.332 33.333 11.47 0.00 36.67 2.83
1741 1777 8.040727 TCCATAATGTAGCGCATATAGATTGTT 58.959 33.333 11.47 0.00 36.67 2.83
1742 1778 7.555965 TCCATAATGTAGCGCATATAGATTGT 58.444 34.615 11.47 0.00 36.67 2.71
1743 1779 8.331022 GTTCCATAATGTAGCGCATATAGATTG 58.669 37.037 11.47 0.00 36.67 2.67
1744 1780 7.222805 CGTTCCATAATGTAGCGCATATAGATT 59.777 37.037 11.47 6.47 36.67 2.40
1745 1781 6.697455 CGTTCCATAATGTAGCGCATATAGAT 59.303 38.462 11.47 0.00 36.67 1.98
1746 1782 6.033966 CGTTCCATAATGTAGCGCATATAGA 58.966 40.000 11.47 0.00 36.67 1.98
1747 1783 5.232202 CCGTTCCATAATGTAGCGCATATAG 59.768 44.000 11.47 0.00 36.67 1.31
1748 1784 5.105675 TCCGTTCCATAATGTAGCGCATATA 60.106 40.000 11.47 0.00 36.67 0.86
1749 1785 3.932710 CCGTTCCATAATGTAGCGCATAT 59.067 43.478 11.47 0.00 36.67 1.78
1750 1786 3.006003 TCCGTTCCATAATGTAGCGCATA 59.994 43.478 11.47 0.00 36.67 3.14
1751 1787 2.143122 CCGTTCCATAATGTAGCGCAT 58.857 47.619 11.47 0.00 40.03 4.73
1752 1788 1.137282 TCCGTTCCATAATGTAGCGCA 59.863 47.619 11.47 0.00 0.00 6.09
1753 1789 1.792949 CTCCGTTCCATAATGTAGCGC 59.207 52.381 0.00 0.00 0.00 5.92
1754 1790 2.404215 CCTCCGTTCCATAATGTAGCG 58.596 52.381 0.00 0.00 0.00 4.26
1755 1791 2.367567 TCCCTCCGTTCCATAATGTAGC 59.632 50.000 0.00 0.00 0.00 3.58
1756 1792 3.641906 ACTCCCTCCGTTCCATAATGTAG 59.358 47.826 0.00 0.00 0.00 2.74
1757 1793 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
1758 1794 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
1759 1795 3.641906 AGTACTCCCTCCGTTCCATAATG 59.358 47.826 0.00 0.00 0.00 1.90
1760 1796 3.924922 AGTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
1761 1797 3.393426 AGTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
1762 1798 3.745480 CGTAGTACTCCCTCCGTTCCATA 60.745 52.174 0.00 0.00 0.00 2.74
1763 1799 2.664015 GTAGTACTCCCTCCGTTCCAT 58.336 52.381 0.00 0.00 0.00 3.41
1764 1800 1.679944 CGTAGTACTCCCTCCGTTCCA 60.680 57.143 0.00 0.00 0.00 3.53
1765 1801 1.020437 CGTAGTACTCCCTCCGTTCC 58.980 60.000 0.00 0.00 0.00 3.62
1766 1802 1.399791 CACGTAGTACTCCCTCCGTTC 59.600 57.143 0.00 0.00 41.61 3.95
1767 1803 1.271597 ACACGTAGTACTCCCTCCGTT 60.272 52.381 0.00 0.00 41.61 4.44
1768 1804 0.326264 ACACGTAGTACTCCCTCCGT 59.674 55.000 0.00 0.00 41.61 4.69
1769 1805 0.731417 CACACGTAGTACTCCCTCCG 59.269 60.000 0.00 0.00 41.61 4.63
1770 1806 2.015587 CTCACACGTAGTACTCCCTCC 58.984 57.143 0.00 0.00 41.61 4.30
1771 1807 2.419324 CACTCACACGTAGTACTCCCTC 59.581 54.545 0.00 0.00 41.61 4.30
1772 1808 2.039480 TCACTCACACGTAGTACTCCCT 59.961 50.000 0.00 0.00 41.61 4.20
1773 1809 2.419324 CTCACTCACACGTAGTACTCCC 59.581 54.545 0.00 0.00 41.61 4.30
1774 1810 2.159544 GCTCACTCACACGTAGTACTCC 60.160 54.545 0.00 0.00 41.61 3.85
1775 1811 2.743126 AGCTCACTCACACGTAGTACTC 59.257 50.000 0.00 0.00 41.61 2.59
1776 1812 2.780714 AGCTCACTCACACGTAGTACT 58.219 47.619 0.00 0.00 41.61 2.73
1777 1813 3.058432 TGAAGCTCACTCACACGTAGTAC 60.058 47.826 0.00 0.00 41.61 2.73
1778 1814 3.143728 TGAAGCTCACTCACACGTAGTA 58.856 45.455 0.00 0.00 41.61 1.82
1802 1838 2.930040 CACACGTCTCTCTCTCTCTCTC 59.070 54.545 0.00 0.00 0.00 3.20
1804 1840 2.930040 CTCACACGTCTCTCTCTCTCTC 59.070 54.545 0.00 0.00 0.00 3.20
1806 1842 2.415168 CACTCACACGTCTCTCTCTCTC 59.585 54.545 0.00 0.00 0.00 3.20
1807 1843 2.224426 ACACTCACACGTCTCTCTCTCT 60.224 50.000 0.00 0.00 0.00 3.10
1808 1844 2.095969 CACACTCACACGTCTCTCTCTC 60.096 54.545 0.00 0.00 0.00 3.20
1809 1845 1.876799 CACACTCACACGTCTCTCTCT 59.123 52.381 0.00 0.00 0.00 3.10
1810 1846 1.604755 ACACACTCACACGTCTCTCTC 59.395 52.381 0.00 0.00 0.00 3.20
1816 1852 1.209128 CCTTCACACACTCACACGTC 58.791 55.000 0.00 0.00 0.00 4.34
1838 1874 0.532573 GATCACTTCTCTCGCACCCA 59.467 55.000 0.00 0.00 0.00 4.51
1840 1876 0.820871 AGGATCACTTCTCTCGCACC 59.179 55.000 0.00 0.00 0.00 5.01
1886 1923 3.448686 GATCACGGAGATGTACAACTGG 58.551 50.000 10.76 4.96 37.00 4.00
1969 2038 5.104941 TCCACCTGTACACAATCTGATTAGG 60.105 44.000 11.35 11.35 0.00 2.69
2003 2072 7.735917 AGTATATAATTTAGGCTGAGCACACA 58.264 34.615 6.82 0.00 0.00 3.72
2054 2123 6.978338 TCTATGGTCGTGTAATATTCAGACC 58.022 40.000 17.52 17.52 45.95 3.85
2055 2124 8.867112 TTTCTATGGTCGTGTAATATTCAGAC 57.133 34.615 0.00 0.00 0.00 3.51
2089 2160 6.844097 AATAACAATGATGGTTACCGGTTT 57.156 33.333 15.04 0.00 33.89 3.27
2195 2270 3.775654 GGGCGCCTCACTGTAGCT 61.776 66.667 28.56 0.00 0.00 3.32
2203 2278 2.439553 AATTCTTTGGGGGCGCCTCA 62.440 55.000 31.11 22.85 28.50 3.86
2313 2388 2.912624 GCTGGTCAAGTGCTGGTGC 61.913 63.158 0.00 0.00 40.20 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.